Citrus Sinensis ID: 037857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
MLNNNNNNNNNNIIRDQKAKVSSGSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQQEEQWLRLNSRGGASKKSN
cccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccc
ccccccccccHHHHEcccccccccccccEEEEEcccccHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mlnnnnnnnnnniirdqkakvssgsprgevgeidtrapfQSVKAAVSLFGevklannknkplfrrtrlssenvLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLkkeydpqlTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGElnvlsikpdsasnitisKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQQEEQWLRLnsrggaskksn
mlnnnnnnnnnniirdqkakvssgSPRGevgeidtrapfQSVKAAVSlfgevklannknkplfrrtrlssenvldketqLLLARKEIErtkkllessestraralgdleraKRTMLElttklkavkdsKESAIAAAEHVRKQAKQLeeaksqkniggiaverkqqVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERkalgelnvlsikpdsasnitiSKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQQEEqwlrlnsrggaskksn
MLnnnnnnnnnnIIRDQKAKVSSGSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSalqqaaeaqrlaKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQkecaelkekeaemeVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLkqaaeaarmlakeaekNLQLALSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNkaveesvavaekklaeaeaqllvINARKNEADKKLEANLTDVEEIKNateaalksaetataaQSMVEAelrrwrqqeeqwlrlNSRGGASKKSN
*****************************************VKAAVSLFGEVKLA******************************************************************************************************IAVE**QQVDIAREHYAITASKID*******************************************************************************************************************************************************************NLVASLKLEL*********************************************************************************************************************************************************QLLVI**********************************************************************
**********************************TRAPFQSVKAA*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MLNNNNNNNNNNIIRDQ************VGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAA****************QKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKH********************ADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIK**************DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAA*****************LRRWRQQEEQWLRL***********
**************************RGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQQEEQWLRLNSR********
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MLNNNNNNNNNNIIRDQKAKVSSGSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSQKNIGGIAVERKQQVDIAREHxxxxxxxxxxxxxxxxxxxxxxxxxxxxKHSALQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQARIVSEKDTLxxxxxxxxxxxxxxxxxxxxxYDPQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxEMDSxxxxxxxxxxxxxxxxxxxxxECSLRNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGALMESIAKESxxxxxxxxxxxxxxxxxxxxxxxxxxxxEAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERKALGELNVLSIKPDSASNITISKEEFDSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEANxxxxxxxxxxxxxxxxxxxxxTAAQSMVEAELRRWRQQEEQWLRLNSRGGASKKSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query582 2.2.26 [Sep-21-2011]
Q9FWW5548 WEB family protein At1g12 yes no 0.910 0.967 0.498 1e-121
Q9LVQ4649 WEB family protein At5g55 no no 0.922 0.827 0.414 8e-81
O23564527 Putative WEB family prote no no 0.855 0.944 0.328 4e-54
O48724807 Protein WEAK CHLOROPLAST no no 0.948 0.684 0.247 3e-17
Q9SZB6779 Protein WEAK CHLOROPLAST no no 0.883 0.659 0.266 2e-11
Q9FMN1751 Protein WEAK CHLOROPLAST no no 0.865 0.671 0.256 1e-05
>sp|Q9FWW5|Y1215_ARATH WEB family protein At1g12150 OS=Arabidopsis thaliana GN=At1g12150 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 280/562 (49%), Positives = 389/562 (69%), Gaps = 32/562 (5%)

Query: 14  IRDQKAKVSSGSPRG-EVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSEN 72
           IR QKA     SPR  EVGEIDTRAPFQSVKAAVSLFGEV ++  ++ P  RR+RLSSE+
Sbjct: 4   IRVQKA---PESPRTMEVGEIDTRAPFQSVKAAVSLFGEVAVSKQRSTP--RRSRLSSES 58

Query: 73  VLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESA 132
           V DKETQL+L  KE  + K+ L+++ESTR+RAL DL +AK+TM +L+ KL+ V  SK+SA
Sbjct: 59  VCDKETQLMLVHKEFMKIKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLETVNKSKQSA 118

Query: 133 IAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQ 192
           I   E V+++ +QLE  K     G        ++D+ARE Y  T  ++DAAKQ+LN+IRQ
Sbjct: 119 IDTKETVQQREEQLEHDKCH---GSPP--HHHELDVAREQYISTTVELDAAKQQLNKIRQ 173

Query: 193 DFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQAR 252
            FD+A++ K +AL QAAEAQR  +V+S +V +L K++S MK+ I Q+KLAA +   E A 
Sbjct: 174 SFDSAMDFKATALNQAAEAQRALQVNSAKVNELSKEISDMKDAIHQLKLAAAQNLQEHAN 233

Query: 253 IVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAH 312
           IV EKD L + Y+ A E AE KL  L+KEY+P+L+  LE +L +TT EI+VL+++MK+AH
Sbjct: 234 IVKEKDDLRECYRTAVEEAEKKLLVLRKEYEPELSRTLEAKLLETTSEIEVLREEMKKAH 293

Query: 313 AAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAE-M 371
            +EM++++ +T ELN+AT  LQEAAD+ECSLR+LV SL++ELED+++E  EL++KEAE +
Sbjct: 294 ESEMNTVKIITNELNEATMRLQEAADDECSLRSLVNSLRMELEDLRREREELQQKEAERL 353

Query: 372 EVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEA 431
           E+ +   +E++ +ES            L+LE++  E   A  E A +  + E LK+  EA
Sbjct: 354 EIEETKKLEALKQES------------LKLEQMKTEAIEARNEAANMNRKIESLKKETEA 401

Query: 432 ARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPD--------SASNITISKEE 483
           A + A+EAEK L+L + EVE+AK++E K   E+ ++S K +        S S I I+ +E
Sbjct: 402 AMIAAEEAEKRLELVIREVEEAKSAEEKVREEMKMISQKQESKKQDEESSGSKIKITIQE 461

Query: 484 FDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKS 543
           F+SL +   E+ A  EKKLA   A+L  IN R+ EAD KLEANL  +EE+K ATE A KS
Sbjct: 462 FESLKRGAGETEAAIEKKLATIAAELEEINKRRAEADNKLEANLKAIEEMKQATELAQKS 521

Query: 544 AETATAAQSMVEAELRRWRQQE 565
           AE+A AA+ MVE+EL+RWRQQE
Sbjct: 522 AESAEAAKRMVESELQRWRQQE 543

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVQ4|Y5586_ARATH WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1 Back     alignment and function description
>sp|O23564|Y4721_ARATH Putative WEB family protein At4g17210 OS=Arabidopsis thaliana GN=At4g17210 PE=3 SV=1 Back     alignment and function description
>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
255563752550 DNA double-strand break repair rad50 ATP 0.898 0.950 0.489 1e-120
15221217548 uncharacterized protein [Arabidopsis tha 0.910 0.967 0.498 1e-119
356532374577 PREDICTED: uncharacterized protein LOC10 0.934 0.942 0.5 1e-119
224089555535 predicted protein [Populus trichocarpa] 0.891 0.970 0.493 1e-118
356557997576 PREDICTED: uncharacterized protein LOC10 0.934 0.944 0.490 1e-117
297849592548 predicted protein [Arabidopsis lyrata su 0.910 0.967 0.487 1e-116
449443668560 PREDICTED: WEB family protein At1g12150- 0.919 0.955 0.496 1e-115
224139444540 predicted protein [Populus trichocarpa] 0.902 0.972 0.496 1e-115
87162792584 Prefoldin [Medicago truncatula] 0.941 0.938 0.465 1e-109
357448071651 hypothetical protein MTR_2g027130 [Medic 0.941 0.841 0.465 1e-109
>gi|255563752|ref|XP_002522877.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223537862|gb|EEF39477.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/549 (48%), Positives = 381/549 (69%), Gaps = 26/549 (4%)

Query: 24  GSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLA 83
           GSP+ EVGEIDTRAPFQSVKAAVSLFGEV  + +K+K   R++RLSSENVLDKETQLLLA
Sbjct: 14  GSPKVEVGEIDTRAPFQSVKAAVSLFGEVATSKDKDKATTRKSRLSSENVLDKETQLLLA 73

Query: 84  RKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQA 143
           ++E+E+ K  L+++E+  ARA  +LE+AK  +  LTTKL +   SK SAI  AE V+KQA
Sbjct: 74  QRELEKYKLQLQTAETVNARANSELEKAKIALNALTTKLNSANGSKLSAIEVAEAVKKQA 133

Query: 144 KQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHS 203
           KQLE     +++G  A  RKQ++D  RE Y    +++D AKQEL ++RQDFDAAL+AK +
Sbjct: 134 KQLE----VEHLGNAA--RKQELDQEREQYTKIVTELDLAKQELTKVRQDFDAALDAKSA 187

Query: 204 ALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQS 263
           + QQAAEAQRLA ++++RV +L K++ AM+E  +Q+KL + +A ++ A IV+ K+  +Q+
Sbjct: 188 SFQQAAEAQRLANMNAQRVTELAKEIRAMQESNQQLKLISAQAQEQIASIVAGKEGRIQA 247

Query: 264 YKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVT 323
            K A+E  +  L SL+++YDP++T NLE++L +TT  I+ LQ++M++AHA EM +++ +T
Sbjct: 248 CKIAKEEVDKNLESLRQDYDPEMTRNLEVKLVETTVGIEALQEEMRKAHAFEMSAVKFIT 307

Query: 324 AELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIA 383
            ELN+ATK+LQE  ++E  LRN+V SLK ELEDV+KE  EL+ KE          ++ + 
Sbjct: 308 TELNEATKTLQEVVEQEALLRNIVTSLKNELEDVKKEKGELQMKE----------VKELV 357

Query: 384 KESAVECEDSL-NEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKN 442
           KE   +  D L +E +  LEKLS ETE A +E   I + +E LKQ A   R++ +E ++ 
Sbjct: 358 KER--KDPDGLSDEQRSMLEKLSTETEIARREAEEINKNSEKLKQEAVKGRLVVEEGKRK 415

Query: 443 LQLALSEVEQAKASERKALGELNVLS-------IKPDSASNITISKEEFDSLNKAVEESV 495
           L++ L+ VEQAK  ER+A  E+ VLS       I  D+ + I +S ++F+ L K VEE  
Sbjct: 416 LEIVLAMVEQAKERERRAHDEMKVLSEKQKSENIDSDNHNTIKMSLQDFELLKKKVEECD 475

Query: 496 AVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVE 555
            +AE K  +A  ++   N RK  A++K+E NL  +EEIK ATE ALKSAE A AAQ++VE
Sbjct: 476 NIAEAKEIDAITEVEASNERKIAAERKMEENLKSIEEIKEATEIALKSAEMAEAAQNVVE 535

Query: 556 AELRRWRQQ 564
            ELRRWRQ+
Sbjct: 536 GELRRWRQK 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15221217|ref|NP_172679.1| uncharacterized protein [Arabidopsis thaliana] gi|75172923|sp|Q9FWW5.1|Y1215_ARATH RecName: Full=WEB family protein At1g12150 gi|10086518|gb|AAG12578.1|AC022522_11 Hypothetical protein [Arabidopsis thaliana] gi|332190722|gb|AEE28843.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356532374|ref|XP_003534748.1| PREDICTED: uncharacterized protein LOC100776481 [Glycine max] Back     alignment and taxonomy information
>gi|224089555|ref|XP_002308754.1| predicted protein [Populus trichocarpa] gi|222854730|gb|EEE92277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557997|ref|XP_003547296.1| PREDICTED: uncharacterized protein LOC100818297 [Glycine max] Back     alignment and taxonomy information
>gi|297849592|ref|XP_002892677.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338519|gb|EFH68936.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449443668|ref|XP_004139599.1| PREDICTED: WEB family protein At1g12150-like [Cucumis sativus] gi|449531259|ref|XP_004172605.1| PREDICTED: WEB family protein At1g12150-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224139444|ref|XP_002323115.1| predicted protein [Populus trichocarpa] gi|222867745|gb|EEF04876.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|87162792|gb|ABD28587.1| Prefoldin [Medicago truncatula] Back     alignment and taxonomy information
>gi|357448071|ref|XP_003594311.1| hypothetical protein MTR_2g027130 [Medicago truncatula] gi|355483359|gb|AES64562.1| hypothetical protein MTR_2g027130 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
TAIR|locus:2201961548 AT1G12150 "AT1G12150" [Arabido 0.896 0.952 0.414 3.3e-95
TAIR|locus:2176625649 AT5G55860 "AT5G55860" [Arabido 0.785 0.704 0.387 3.7e-71
TAIR|locus:2130729527 AT4G17210 "AT4G17210" [Arabido 0.527 0.582 0.316 1.3e-38
TAIR|locus:2119206779 AT4G33390 "AT4G33390" [Arabido 0.694 0.518 0.246 9e-20
TAIR|locus:2066301807 WEB1 "WEAK CHLOROPLAST MOVEMEN 0.718 0.517 0.218 2.1e-16
TAIR|locus:2160046751 AT5G42880 "AT5G42880" [Arabido 0.719 0.557 0.233 8.7e-16
TAIR|locus:2825751752 AT1G45545 "AT1G45545" [Arabido 0.761 0.589 0.204 2.4e-14
DICTYBASE|DDB_G0270864 963 DDB_G0270864 "unknown" [Dictyo 0.589 0.356 0.254 7.3e-13
UNIPROTKB|G4N0Y1709 MGG_09571 "Uncharacterized pro 0.620 0.509 0.248 1.6e-11
UNIPROTKB|P35749 1972 MYH11 "Myosin-11" [Homo sapien 0.800 0.236 0.216 1.3e-10
TAIR|locus:2201961 AT1G12150 "AT1G12150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 229/552 (41%), Positives = 325/552 (58%)

Query:    14 IRDQKAKVSSGSPRG-EVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSEN 72
             IR QKA  S   PR  EVGEIDTRAPFQSVKAAVSLFGEV ++  ++ P  RR+RLSSE+
Sbjct:     4 IRVQKAPES---PRTMEVGEIDTRAPFQSVKAAVSLFGEVAVSKQRSTP--RRSRLSSES 58

Query:    73 VLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESA 132
             V DKETQL+L  KE  + K+ L+++ESTR+RAL DL +AK+TM +L+ KL+ V  SK+SA
Sbjct:    59 VCDKETQLMLVHKEFMKIKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLETVNKSKQSA 118

Query:   133 IAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQ 192
             I   E V+++ +QLE  K      G +     ++D+ARE Y  T  ++DAAKQ+LN+IRQ
Sbjct:   119 IDTKETVQQREEQLEHDKCH----G-SPPHHHELDVAREQYISTTVELDAAKQQLNKIRQ 173

Query:   193 DFDAALEAKHSXXXXXXXXXXXXKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQAR 252
              FD+A++ K +            +V+S +V +L K++S MK+ I Q+KLAA +   E A 
Sbjct:   174 SFDSAMDFKATALNQAAEAQRALQVNSAKVNELSKEISDMKDAIHQLKLAAAQNLQEHAN 233

Query:   253 IVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAH 312
             IV EKD L + Y+ A E AE KL  L+KEY+P+L+  LE +L +TT EI+VL+++MK+AH
Sbjct:   234 IVKEKDDLRECYRTAVEEAEKKLLVLRKEYEPELSRTLEAKLLETTSEIEVLREEMKKAH 293

Query:   313 AAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQXXXXXXXXXXXXXX 372
              +EM++++ +T ELN+AT  LQEAAD+ECSLR+LV SL++ELED++              
Sbjct:   294 ESEMNTVKIITNELNEATMRLQEAADDECSLRSLVNSLRMELEDLRREREELQQ------ 347

Query:   373 VIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLXXXXXXX 432
               K A  E +  E   + E +L +  L+LE++  E   A  E A +  + E L       
Sbjct:   348 --KEA--ERLEIEETKKLE-ALKQESLKLEQMKTEAIEARNEAANMNRKIESLKKETEAA 402

Query:   433 XXXXXXXXXNLQLALSEVEQAKASERKALGELNVLSIKPDS--------ASNITISKEEF 484
                       L+L + EVE+AK++E K   E+ ++S K +S         S I I+ +EF
Sbjct:   403 MIAAEEAEKRLELVIREVEEAKSAEEKVREEMKMISQKQESKKQDEESSGSKIKITIQEF 462

Query:   485 DSLNXXXXXXXXXXXXXXXXXXXXXXXINARKNEADKKLEANLTDVEEIKNXXXXXXXXX 544
             +SL                        IN R+ EAD KLEANL  +EE+K          
Sbjct:   463 ESLKRGAGETEAAIEKKLATIAAELEEINKRRAEADNKLEANLKAIEEMKQATELAQKSA 522

Query:   545 XXXXXXQSMVEA 556
                   + MVE+
Sbjct:   523 ESAEAAKRMVES 534
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130729 AT4G17210 "AT4G17210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270864 DDB_G0270864 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4N0Y1 MGG_09571 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|P35749 MYH11 "Myosin-11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FWW5Y1215_ARATHNo assigned EC number0.49820.91060.9671yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 8e-55
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 9e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK00488339 PRK00488, pheS, phenylalanyl-tRNA synthetase subun 0.002
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.002
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.002
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information 
 Score =  192 bits (490), Expect = 8e-55
 Identities = 187/514 (36%), Positives = 291/514 (56%), Gaps = 38/514 (7%)

Query: 36  RAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLE 95
            APF+SVK AVSLFG +                 SE VL KET+L+LA++E  + KK LE
Sbjct: 1   SAPFESVKEAVSLFGGIADWKAHLPQR-------SERVLVKETELMLAQEEANKLKKELE 53

Query: 96  SSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNI 155
            +E  + + L +LE  KRT+ +L  KL+  +  ++ A   +E  + +A++LE+   +  +
Sbjct: 54  VAEKEKLQVLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGIQELEV 113

Query: 156 GGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLA 215
                          E Y    +++D+ K+EL +IRQ++DA +E + +AL++A EA   +
Sbjct: 114 ---------------ERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICAS 158

Query: 216 KVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKL 275
           KV+ ++V +L K++ AMKE +++   A  EA +E+     EKD   ++Y+   + AE +L
Sbjct: 159 KVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKEL 218

Query: 276 NSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQE 335
             LK++ DP+       +LA+ + E++ LQK++       M S+ +V  EL +A  +L++
Sbjct: 219 ERLKQDLDPEKDLE---KLAEASAELESLQKEIS-----IMASVASVLKELEEAKANLEK 270

Query: 336 AADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAK---ESAVECED 392
           AA+EE SLRNLV SLK ELE+ +KE  EL+EKE E E    +L   + +   E   +  +
Sbjct: 271 AAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKARE 330

Query: 393 SLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQ 452
            + E  L+L++ S+E E A KE    +EE   LK+ AE  +   + AE  L+ AL E E 
Sbjct: 331 KMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAALKEAEA 390

Query: 453 AKASERKALGELNVL-----SIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAEA 507
           AKA+E  AL E+  L     S K DS   IT+S EE++ L+K  EE+  +AEKK+A A A
Sbjct: 391 AKAAEALALAEIKALQESEESAKADSPRKITLSLEEYEELSKKAEEAEELAEKKVAAALA 450

Query: 508 QLLVINARKNEADKKLEANLTDVEEIKNATEAAL 541
           Q+      +NE+ KKLE    ++EE K A E AL
Sbjct: 451 QVEEAKESENESLKKLEEASKEIEEKKAALEEAL 484

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 582
PF05701522 WEMBL: Weak chloroplast movement under blue light; 100.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 99.49
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.38
PF10174775 Cast: RIM-binding protein of the cytomatrix active 98.26
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.93
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.91
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.84
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.63
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.56
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.52
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.48
PRK02224 880 chromosome segregation protein; Provisional 97.47
KOG09331174 consensus Structural maintenance of chromosome pro 97.45
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.42
PF00038312 Filament: Intermediate filament protein; InterPro: 97.35
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.35
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.94
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.75
PRK04778569 septation ring formation regulator EzrA; Provision 96.49
PRK02224 880 chromosome segregation protein; Provisional 96.43
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.3
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.25
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.22
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.11
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.1
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.07
KOG09641200 consensus Structural maintenance of chromosome pro 96.05
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.98
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.97
PF00038312 Filament: Intermediate filament protein; InterPro: 95.97
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.76
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.73
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.66
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.5
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.45
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.52
PRK11637428 AmiB activator; Provisional 93.17
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 93.15
KOG0971 1243 consensus Microtubule-associated protein dynactin 92.83
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 92.76
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 92.59
PRK03918880 chromosome segregation protein; Provisional 91.21
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 90.23
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.1
KOG0971 1243 consensus Microtubule-associated protein dynactin 90.07
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 89.52
KOG0964 1200 consensus Structural maintenance of chromosome pro 89.4
PHA02562562 46 endonuclease subunit; Provisional 88.78
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.75
PRK11637428 AmiB activator; Provisional 88.36
PF05276239 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int 86.83
COG4372499 Uncharacterized protein conserved in bacteria with 86.13
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 85.98
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 85.8
KOG0996 1293 consensus Structural maintenance of chromosome pro 85.56
PF11570136 E2R135: Coiled-coil receptor-binding R-domain of c 84.36
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 84.18
PHA02562562 46 endonuclease subunit; Provisional 84.17
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 83.6
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 83.0
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 82.68
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 81.67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=7.6e-90  Score=760.62  Aligned_cols=491  Identities=39%  Similarity=0.512  Sum_probs=468.2

Q ss_pred             CCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857           36 RAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTM  115 (582)
Q Consensus        36 ~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~v  115 (582)
                      +|||+|||+|||+|||+++||    |.     ++++++..+++||+++|+|+++|++++..+|.+|++|++||++||++|
T Consensus         1 ~apf~SVk~Avs~FG~~~~~k----~~-----~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~v   71 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSIDWK----KH-----QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTV   71 (522)
T ss_pred             CCCChHHHHHHHHcCCccccc----cC-----CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999882    11     344899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857          116 LELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFD  195 (582)
Q Consensus       116 eeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~  195 (582)
                      ++|+++|+.++.++.+|+++++++++|+++|++|+++.++    +.|+.+|+++++||+.++++|++|++||.++|++|+
T Consensus        72 eel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~----~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~  147 (522)
T PF05701_consen   72 EELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS----VAWKAELESAREQYASAVAELDSVKQELEKLRQELA  147 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988653    569999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 037857          196 AALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKL  275 (582)
Q Consensus       196 s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l  275 (582)
                      +++++|+.|+++|++|+++++.|.++|++|+.||+++|++|+++|++|++|++++.+|..+++.++..|+..|++++.+|
T Consensus       148 ~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l  227 (522)
T PF05701_consen  148 SALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEEL  227 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 037857          276 NSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDS--------------MRAVTAELNKATKSLQEAADEEC  341 (582)
Q Consensus       276 ~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~s--------------v~s~~~ELeeaK~~Lek~~eE~~  341 (582)
                      ++|+.++  +.+++|+++|..++.++..|+.+|+.++.+.++.              |.+++.||++++.+|+++++|++
T Consensus       228 ~~L~~e~--~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~  305 (522)
T PF05701_consen  228 EELKEEL--EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS  305 (522)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999  6899999999999999999999999999877765              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-HHhHHHHhhhh--hH----hhhhhhhHHHHHHHHHHHHHHHHH
Q 037857          342 SLRNLVASLKLELEDVQKECAELKEKEAEM--EVIK-GALMESIAKES--AV----ECEDSLNEHKLELEKLSAETETAM  412 (582)
Q Consensus       342 ~l~~~v~SLr~ELek~K~el~~Lke~E~~a--~~~~-~~eL~~~kse~--a~----~~~e~~~~l~~~lqql~~Eae~ak  412 (582)
                      +|+..++||+.||+++|.++..++++++++  .+.+ +.+|++++++.  +.    .+.+.+.+|+..|++++.|++.|+
T Consensus       306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak  385 (522)
T PF05701_consen  306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK  385 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998  5566 99999999994  22    244557899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCCCCCccccHHhh
Q 037857          413 KEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIK--------PDSASNITISKEEF  484 (582)
Q Consensus       413 ~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~--------s~~~~~Itis~eEy  484 (582)
                      +++..++.++.+++.+++++++.+.|++.||+++++|++++|+||++|+++|++|+++        ++++++||||++||
T Consensus       386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy  465 (522)
T PF05701_consen  386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEY  465 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986        23789999999999


Q ss_pred             HHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857          485 DSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAAL  541 (582)
Q Consensus       485 e~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al  541 (582)
                      ++|++|++++++++++||++||+||+++|+|++++|+||++++++|+++|.+|..|+
T Consensus       466 ~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al  522 (522)
T PF05701_consen  466 ESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL  522 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999985

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 5e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.8 bits (175), Expect = 4e-13
 Identities = 61/430 (14%), Positives = 125/430 (29%), Gaps = 125/430 (29%)

Query: 123 KAVKDSKESAIAAAE--HVRKQAKQLEEA--------KSQKNIGGIAVERKQQVDIAREH 172
           K V+D  +S ++  E  H+      +             Q+ +    VE     ++ R +
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-----EVLRIN 90

Query: 173 YAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAM 232
           Y    S I   +++ + + + +      +   L    + Q  AK +  R           
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYN--DNQVFAKYNVSR----------- 133

Query: 233 KEGIKQIKLAAQEATDEQARIV-----SEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLT 287
            +   +++ A  E    +  ++     S K  +      A +            Y  Q  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------ALDVC--------LSYKVQCK 179

Query: 288 ENLEI------QLAQTTEEIKVLQK---QMKQAHAAEMDSMRAVTAELNKATKSLQEAAD 338
            + +I              +++LQK   Q+     +  D    +   ++    S+Q    
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH----SIQAELR 235

Query: 339 EECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKG------ALM----ESIAK--ES 386
                +     L L L +VQ             +           L+    + +     +
Sbjct: 236 RLLKSKPYENCL-LVLLNVQ-----------NAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 387 AVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLA 446
           A     SL+ H + L     E ++ +          ++L    +    L +E        
Sbjct: 284 ATTTHISLDHHSMTLTP--DEVKSLL---------LKYLDCRPQ---DLPREVLTTNPRR 329

Query: 447 LSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAE 506
           LS            + E   +     +  N        D L   +E S+ V    L  AE
Sbjct: 330 LS-----------IIAES--IRDGLATWDNW--KHVNCDKLTTIIESSLNV----LEPAE 370

Query: 507 AQ----LLVI 512
            +     L +
Sbjct: 371 YRKMFDRLSV 380
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.77
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.58
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.12
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.57
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.14
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 92.64
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 91.77
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 90.11
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 88.83
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.77  E-value=0.031  Score=53.60  Aligned_cols=51  Identities=8%  Similarity=0.036  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857           76 KETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK  126 (582)
Q Consensus        76 ~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~  126 (582)
                      +..+++.+...+..+...+......-..+..++...+..+..+...+....
T Consensus        11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (284)
T 1c1g_A           11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS   61 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555554444444444444444444444444333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00