Citrus Sinensis ID: 038017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQHISHMK
ccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEEcccccccccccccccccccccEEEEccccccccHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccHHHHHHccccccccccHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccHHHccHHHHHccccccHHHHHHHccccccEEcccccccccccccccHHHccccccccccccccccccccccccccccEEEEEccccEEEccccccccHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHccccccccccccccccccccEEEcEEEEEEEEccccccccccccccccccccccccccccccEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccEEEEEEEEcHHHHHHHHHHHHccc
cccccccHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHccccEEEccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEccccccHHHcccccEEEEEEcHHHccccccEEEEEcccccEEEEEcccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHcccccccccHcEEcccccccccccccccEEEEEccccEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHccEEEEEEccHccccccccEEEEEEcHHHHEEEEEEcccHHHHHHHcccccccEEcccEEEccHHHHHEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHEEEEEEEEcHHHHHHHHHHHHHcc
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMekvskapfaevvaledskpygailYDVKVdcwrnrfsnpgkepyktlpgdilvladakpetasdlqRVGRMwtfsedingneikekecrkdAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFnlgthlpksyigednfQVLGTVISFLDSFETLLfqdnmgsedleelfshsvdedfsqSIVDIKYTLHESRSKCHSVLRELWNSFkelnlpsamnmGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLkesesaiplqlpcIQHAILvgdecqlpamvessvsgeayFGRSLFERLSYLGHSKHLLSMQyrmhpsisffpnsyfyenkildaptvrkrsyekqflpgpmygpyafINVFGGREEFIEHSCRNMVEVSVVMKILLNLnlevpktwaVTSNIVRFKnladnesgsdlsgaafdcrsyvensnvtdsLLLMKfyplssgivshllsdrdgreldlpfevtdeqlemilfprstfilgrsgtgktTILTMKLFQnekhhhmakeqfygvnngltlhtsreveaveglggteryILHQLFVTVSPKLCFAVKQHISHMK
vkqiplsfqsvsQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSnpgkepyktlpGDILVLADAKPEtasdlqrvgrmwtfsedingneikekecrkdaevskVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEkqflpgpmyGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMIlfprstfilgrsgTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQHISHMK
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQHISHMK
*******FQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAK*****DLQRVGRMWTFSEDINGNEIK**ECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADN****DLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQH*****
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKE**********KVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFET**************************************************NSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINV****************EVSVVMKILLNLNLEVPKTWAVTSNIVRFKNL*************FDCRSYVENSNVTDSLLLMKFYPL****************LDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFY**************************ILHQLFVTVSPKLCFAVKQHISHM*
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQHISHMK
*KQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKE**********KVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNN*****************GTERYILHQLFVTVSPKLCFAVKQHISHMK
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VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQHISHMK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query610 2.2.26 [Sep-21-2011]
Q86AS0967 Probable helicase DDB_G02 no no 0.273 0.172 0.324 2e-19
B6SFA4818 Probable helicase MAGATAM no no 0.263 0.196 0.335 2e-19
Q00416 2231 Helicase SEN1 OS=Saccharo yes no 0.263 0.072 0.367 1e-17
O94387 1944 Uncharacterized ATP-depen yes no 0.324 0.101 0.320 1e-17
Q9EPU0 1124 Regulator of nonsense tra no no 0.277 0.150 0.352 1e-15
Q9FJR0 1254 Regulator of nonsense tra no no 0.272 0.132 0.335 1e-15
Q92900 1129 Regulator of nonsense tra yes no 0.277 0.149 0.352 1e-15
P30771971 ATP-dependent helicase NA no no 0.240 0.151 0.339 2e-15
Q6ZU11926 Uncharacterized protein F no no 0.244 0.160 0.337 2e-14
Q9VYS3 1180 Regulator of nonsense tra no no 0.265 0.137 0.350 3e-14
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1 Back     alignment and function desciption
 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 12/179 (6%)

Query: 247 SAMNMGLLKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQL 305
           S  +   ++     +A ++  T S S   L +        ++IDEAAQ  E+ + IP+Q 
Sbjct: 548 STQDTSSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQH 607

Query: 306 PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFF 365
            C +  +LVGD  QLPA + S ++ +  + +SLF+RL    +S H+L+ QYRMH  I  F
Sbjct: 608 GC-KKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE-KNSPHMLTTQYRMHSLIRAF 665

Query: 366 PNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVF-------GGREEFIEHSCR 417
           P+ +FY++ +LD P +  R+    +   P +GP  F ++        GG   F EH C+
Sbjct: 666 PSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK 722

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1 Back     alignment and function description
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2 Back     alignment and function description
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1 Back     alignment and function description
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2 Back     alignment and function description
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 Back     alignment and function description
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1 Back     alignment and function description
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query610
255555527 2820 conserved hypothetical protein [Ricinus 0.622 0.134 0.523 1e-100
359473527 2788 PREDICTED: uncharacterized protein LOC10 0.511 0.111 0.598 4e-98
359473525 2792 PREDICTED: uncharacterized protein LOC10 0.514 0.112 0.596 3e-96
147865014 2676 hypothetical protein VITISV_037587 [Viti 0.504 0.115 0.589 2e-95
356510822 2812 PREDICTED: uncharacterized protein LOC10 0.524 0.113 0.577 1e-93
359473529 883 PREDICTED: uncharacterized protein LOC10 0.498 0.344 0.552 4e-86
147802044 2275 hypothetical protein VITISV_025023 [Viti 0.498 0.133 0.552 2e-85
297738288 2562 unnamed protein product [Vitis vinifera] 0.445 0.106 0.578 4e-84
359473531 2818 PREDICTED: uncharacterized protein LOC10 0.501 0.108 0.545 4e-84
449498392 1064 PREDICTED: uncharacterized protein LOC10 0.5 0.286 0.532 6e-84
>gi|255555527|ref|XP_002518800.1| conserved hypothetical protein [Ricinus communis] gi|223542181|gb|EEF43725.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/397 (52%), Positives = 263/397 (66%), Gaps = 17/397 (4%)

Query: 118 KEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGT 177
           KEKE R  A VS    K+FLEF RERF  TA PL+ C  +L  H+P+SYI + N   + +
Sbjct: 424 KEKEFRNVANVSNQGNKSFLEFARERFLSTALPLKRCALSLCIHIPESYILKHNVDNIVS 483

Query: 178 VISFLDSFETLLFQDNMGSEDLEELFSH-SVDEDFSQSIVDIKYTLHESRSKCHSVLREL 236
           ++  L +F TLLF+D++ SEDL+ELFS   + ED SQ   ++   L   R +C  +L+ +
Sbjct: 484 LVGLLGTFGTLLFRDDVISEDLQELFSRPDLVEDSSQGFAEVLLLLCLKRDECLLLLKTV 543

Query: 237 WNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKE 296
            NS ++L+LPSAM+ G +  FCF  ASLIFCTASSSYKLHS+ +E L  LVIDEAAQLKE
Sbjct: 544 CNSLRKLDLPSAMSKGSIVKFCFRTASLIFCTASSSYKLHSLEIEPLDLLVIDEAAQLKE 603

Query: 297 SESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQY 356
            ESAIPLQ+  I+HAIL+GDECQLPAMVES VSGEA FGRSLFERLS LGHSKHLL MQY
Sbjct: 604 CESAIPLQIAGIRHAILIGDECQLPAMVESVVSGEAGFGRSLFERLSTLGHSKHLLDMQY 663

Query: 357 RMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEF--IEH 414
           RMHP IS FPNS FY N+ILDA  V+ + YEK  LPGPM+GPY+FINVF GREE   I H
Sbjct: 664 RMHPFISRFPNSRFYFNQILDASNVKCKVYEKHPLPGPMFGPYSFINVFDGREEMDNIGH 723

Query: 415 SCRNMVEVSVVMKILL-----------NLNLEVPKTWAVTSNIVRFKNLADNESGSDLSG 463
           S +NMVEV++V+KI+            NL + V   +A   N +R K    N+   D+ G
Sbjct: 724 SWKNMVEVAIVLKIVRRLHKAWNGSNKNLTIGVISPYAAQVNAIRDKL---NKKYEDIYG 780

Query: 464 AAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSD 500
            +   RS        + ++++     +SG     LS+
Sbjct: 781 FSVKVRSVDGFQGGEEDIIILSTVRANSGGAVGFLSN 817

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473527|ref|XP_002263192.2| PREDICTED: uncharacterized protein LOC100243095 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473525|ref|XP_003631315.1| PREDICTED: uncharacterized protein LOC100265010 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865014|emb|CAN78970.1| hypothetical protein VITISV_037587 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510822|ref|XP_003524133.1| PREDICTED: uncharacterized protein LOC100802419 [Glycine max] Back     alignment and taxonomy information
>gi|359473529|ref|XP_003631316.1| PREDICTED: uncharacterized protein LOC100855072 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147802044|emb|CAN66065.1| hypothetical protein VITISV_025023 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738288|emb|CBI27489.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473531|ref|XP_002269567.2| PREDICTED: uncharacterized protein LOC100251075 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449498392|ref|XP_004160526.1| PREDICTED: uncharacterized protein LOC101225988 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query610
TAIR|locus:2018561 1050 AT1G65810 [Arabidopsis thalian 0.390 0.226 0.537 2.5e-70
TAIR|locus:2166173839 AT5G37150 [Arabidopsis thalian 0.314 0.228 0.523 8.6e-68
TAIR|locus:2166183871 AT5G37160 [Arabidopsis thalian 0.488 0.342 0.406 1.9e-58
TAIR|locus:2018536 1065 AT1G65780 [Arabidopsis thalian 0.637 0.365 0.395 2.9e-56
TAIR|locus:2173033676 AT5G52090 [Arabidopsis thalian 0.314 0.284 0.512 1.6e-55
TAIR|locus:2166163692 AT5G37140 [Arabidopsis thalian 0.363 0.320 0.474 1.6e-55
TAIR|locus:2135472689 AT4G05540 [Arabidopsis thalian 0.334 0.296 0.517 8.8e-55
TAIR|locus:2152627638 AT5G37030 [Arabidopsis thalian 0.245 0.235 0.589 2.6e-48
TAIR|locus:20590881090 AT2G19120 "AT2G19120" [Arabido 0.240 0.134 0.406 1.4e-22
TAIR|locus:21264801311 AT4G30100 [Arabidopsis thalian 0.240 0.112 0.4 9.2e-22
TAIR|locus:2018561 AT1G65810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 588 (212.0 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
 Identities = 130/242 (53%), Positives = 166/242 (68%)

Query:   193 NMGSEDLEELFSHSVDED-FSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNM 251
             N  +  L  + +  V  D + +    +K T  E+ S+    L  L +    + LP  ++ 
Sbjct:   464 NQTNNLLRNIAASDVMRDGYGRMKYKLKDTGDENDSRTQDCLEMLTSISMSIKLPDFISK 523

Query:   252 GLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHA 311
               L+  C   A L+FCTASSS +LH  +  QL  LVIDEAAQLKE ESAIPLQL  +QHA
Sbjct:   524 FELQKLCLDNAYLLFCTASSSARLHMSSPIQL--LVIDEAAQLKECESAIPLQLRGLQHA 581

Query:   312 ILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFY 371
             IL+GDE QLPAM++S+++ EA  GRSLFERL  LGH+K LL+MQYRMHPSIS FPN  FY
Sbjct:   582 ILIGDEKQLPAMIKSNIASEADLGRSLFERLVLLGHNKQLLNMQYRMHPSISIFPNREFY 641

Query:   372 ENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNMVEVSVVMKILL 430
             + KILDAP+VR RSYEK+FLP  MYGPY+FIN+  GRE+F E +S +N+VEVSVV +I+ 
Sbjct:   642 DMKILDAPSVRLRSYEKKFLPEKMYGPYSFINIAYGREQFGEGYSSKNLVEVSVVAEIVS 701

Query:   431 NL 432
              L
Sbjct:   702 KL 703
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
TAIR|locus:2166173 AT5G37150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166183 AT5G37160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018536 AT1G65780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173033 AT5G52090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166163 AT5G37140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135472 AT4G05540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152627 AT5G37030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059088 AT2G19120 "AT2G19120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126480 AT4G30100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013393001
SubName- Full=Chromosome undetermined scaffold_473, whole genome shotgun sequence; (1746 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query610
pfam13087195 pfam13087, AAA_12, AAA domain 2e-28
COG1112767 COG1112, COG1112, Superfamily I DNA and RNA helica 3e-17
pfam13086220 pfam13086, AAA_11, AAA domain 4e-15
TIGR00376637 TIGR00376, TIGR00376, DNA helicase, putative 5e-12
>gnl|CDD|221913 pfam13087, AAA_12, AAA domain Back     alignment and domain information 
 Score =  112 bits (282), Expect = 2e-28
 Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 334 FGRSLFERLSYLG-HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLP 392
             RSLFERL   G  +  +L  QYRMHP IS FP+  FY  K+ D  +V +R     F  
Sbjct: 1   LDRSLFERLQEAGPEAVVMLDTQYRMHPDISEFPSELFYGGKLKDGESVAERPLPWDFHL 60

Query: 393 GPMYGPYAFINVFGGREEF-IEHSCRNMVEVSVVMKILLNLNLEVPKTW 440
               GP  FI+V G  EE     S  N  E  +V++++  L    P+  
Sbjct: 61  PDPLGPLVFIDVDGSEEEEEKSTSYSNEAEAELVVQLVEKLLKSGPEKN 109

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Length = 195
>gnl|CDD|224037 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|221912 pfam13086, AAA_11, AAA domain Back     alignment and domain information
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 610
KOG1803649 consensus DNA helicase [Replication, recombination 100.0
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 100.0
TIGR00376637 DNA helicase, putative. The gene product may repre 100.0
KOG1801827 consensus tRNA-splicing endonuclease positive effe 100.0
KOG18051100 consensus DNA replication helicase [Replication, r 100.0
KOG18071025 consensus Helicases [Replication, recombination an 100.0
COG1112767 Superfamily I DNA and RNA helicases and helicase s 99.97
PF13087200 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP 99.87
KOG1804775 consensus RNA helicase [RNA processing and modific 99.83
KOG18061320 consensus DEAD box containing helicases [Replicati 99.78
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 99.59
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.11
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.69
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.52
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.34
KOG1804 775 consensus RNA helicase [RNA processing and modific 97.26
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 97.2
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.01
PRK13826 1102 Dtr system oriT relaxase; Provisional 96.84
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 96.82
PRK13889 988 conjugal transfer relaxase TraA; Provisional 96.78
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.43
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 96.4
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 95.86
PRK11054684 helD DNA helicase IV; Provisional 95.27
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 95.05
PF00580 315 UvrD-helicase: UvrD/REP helicase N-terminal domain 95.0
TIGR00609 1087 recB exodeoxyribonuclease V, beta subunit. All pro 94.97
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 94.92
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 94.9
PRK10919 672 ATP-dependent DNA helicase Rep; Provisional 94.61
PRK13909 910 putative recombination protein RecB; Provisional 94.38
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 94.37
COG1074 1139 RecB ATP-dependent exoDNAse (exonuclease V) beta s 94.36
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 94.19
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 94.14
TIGR02784 1141 addA_alphas double-strand break repair helicase Ad 93.79
PRK10876 1181 recB exonuclease V subunit beta; Provisional 93.69
TIGR01074 664 rep ATP-dependent DNA helicase Rep. Designed to id 93.47
PRK10536262 hypothetical protein; Provisional 91.93
COG0210 655 UvrD Superfamily I DNA and RNA helicases [DNA repl 88.44
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 84.83
COG0507696 RecD ATP-dependent exoDNAse (exonuclease V), alpha 84.6
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 83.76
TIGR01074 664 rep ATP-dependent DNA helicase Rep. Designed to id 83.49
PF1324576 AAA_19: Part of AAA domain 83.4
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 82.38
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 81.42
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 80.93
PRK04837 423 ATP-dependent RNA helicase RhlB; Provisional 80.85
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-46  Score=403.24  Aligned_cols=278  Identities=23%  Similarity=0.256  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCccccchhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhc
Q 038017          224 ESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL  303 (610)
Q Consensus       224 ~~r~~~~~~l~~l~~~l~~l~l~~~~~~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL  303 (610)
                      ..|++....++.|++++++.+       +.....++.+++|||||..+|.. ..+....||+||||||||+.||++|+|+
T Consensus       308 ~~~~~~~~~i~~lrkdl~kre-------~~~v~eii~n~~VVfaTl~ga~~-~~~~~~~fD~vIIDEaaQamE~~cWipv  379 (649)
T KOG1803|consen  308 KLRKGIRKEIKLLRKDLRKRE-------RKTVKEIISNSRVVFATLGGALD-RLLRKRTFDLVIIDEAAQAMEPQCWIPV  379 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcccceEEEeccchhh-hhhcccCCCEEEEehhhhhccchhhhHH
Confidence            456677778888888877653       45567899999999999988776 2334467999999999999999999999


Q ss_pred             cCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC--CCccccccccCCchhhhhcchhhhcCCCCccCccc
Q 038017          304 QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG--HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV  381 (610)
Q Consensus       304 ~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g--~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v  381 (610)
                      .  ..+++||+|||+||||++.+..+...|++.|+|||+....  ...++|++|||||..|+.|+|..||+|+|++++++
T Consensus       380 l--k~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~~Im~wsn~~fY~~qlka~~~v  457 (649)
T KOG1803|consen  380 L--KGKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNEKIMNWSNEVFYNGQLKAASSV  457 (649)
T ss_pred             h--cCCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcchHHHhhCcHhhhcCCeeeecchh
Confidence            8  4689999999999999999999999999999999999874  67899999999999999999999999999999999


Q ss_pred             cccccccccCC---CCCCCCeEEEEeCCCe--ee----ecCCccCCHHHHHHHHHHHHH--------ccccCCCcccccc
Q 038017          382 RKRSYEKQFLP---GPMYGPYAFINVFGGR--EE----FIEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTS  444 (610)
Q Consensus       382 ~~~~~~~~~~~---~~~~~p~~fidv~~g~--e~----~~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv  444 (610)
                      .++.+...+..   .+.+.|+.|+|+....  |.    ....|++|.+||++|..+++.        ..|+|++||++|+
T Consensus       458 ~~~lL~dl~~v~~t~~t~~PlvlvDT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~L~~~gV~p~dIaVIsPY~aQv  537 (649)
T KOG1803|consen  458 ASHLLRDLPNVLATESTKSPLVLVDTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKRLLEAGVQPSDIAVISPYNAQV  537 (649)
T ss_pred             hhhhhhcccCCCCccccCCcEEEEecccchhhhhccchhhccccCCHHHHHHHHHHHHHHHHcCCChhHeEEeccchHHH
Confidence            98876543332   2346799999994322  11    123599999999999999987        4699999999999


Q ss_pred             cEEEeeccccccCCCCCcccccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcC
Q 038017          445 NIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFP  523 (610)
Q Consensus       445 ~iI~~~~~~~~~~~~~~~v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~  523 (610)
                      .++|.   .......+.++.|||+|||+|    ++.+++..+|+++.+-+|++-+.++     +||++||+++++++.|
T Consensus       538 ~llR~---~~~~~~~~veV~TVD~fQGrE----kdvVIfsmVRSN~k~evGFL~e~RR-----LNVAiTRaRRh~~vIg  604 (649)
T KOG1803|consen  538 SLLRE---EDEEDFRDVEVGTVDGFQGRE----KDVVIFSLVRSNDKGEVGFLGETRR-----LNVAITRARRHFVVIG  604 (649)
T ss_pred             HHHhh---cccccCccceeecccccccce----eeEEEEEEEeecCcccccccCCcce-----eeEEEEeccceEEEEc
Confidence            99992   111223457889999999999    7777888899999999999955543     9999999999976653

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1807 consensus Helicases [Replication, recombination and repair] Back     alignment and domain information
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A Back     alignment and domain information
>KOG1804 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG1804 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>TIGR00609 recB exodeoxyribonuclease V, beta subunit Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK13909 putative recombination protein RecB; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type Back     alignment and domain information
>PRK10876 recB exonuclease V subunit beta; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query610
2wjv_A800 Crystal Structure Of The Complex Between Human Nons 9e-17
2gjk_A624 Structural And Functional Insights Into The Human U 1e-16
2xzo_A623 Upf1 Helicase - Rna Complex Length = 623 1e-16
2xzl_A802 Upf1-Rna Complex Length = 802 1e-16
4b3g_A646 Crystal Structure Of Ighmbp2 Helicase In Complex Wi 3e-06
4b3f_X646 Crystal Structure Of 1ghmbp2 Helicase Length = 646 3e-06
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense Mediated Decay Factors Upf1 And Upf2 Length = 800 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
           A +I CT   +       M Q + ++IDE+ Q  E E  +P+ L   Q  ILVGD CQL 
Sbjct: 496 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 553
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
            +V    + +A   +SLFERL  LG     L +QYRMHP++S FP++ FYE  + +  T 
Sbjct: 554 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 613
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
             R  +      P      F  V  G+EE      S  N  E + V KI   L
Sbjct: 614 ADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 666
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1 Helicase Core Length = 624 Back     alignment and structure
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex Length = 623 Back     alignment and structure
>pdb|2XZL|A Chain A, Upf1-Rna Complex Length = 802 Back     alignment and structure
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna Length = 646 Back     alignment and structure
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase Length = 646 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query610
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 1e-52
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 2e-49
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 2e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 4e-05
3u4q_B 1166 ATP-dependent helicase/deoxyribonuclease subunit; 5e-05
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Length = 802 Back     alignment and structure
 Score =  192 bits (489), Expect = 1e-52
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 11/247 (4%)

Query: 193 NMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMG 252
           ++G + +        D + S S + +   +          L +L +   EL+        
Sbjct: 426 DLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFV 485

Query: 253 LLK----DFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCI 308
            L          KA ++ CT   +         + + ++IDE+ Q  E E  IP+     
Sbjct: 486 KLVRKTEAEILNKADVVCCTCVGAG--DKRLDTKFRTVLIDESTQASEPECLIPIVKGA- 542

Query: 309 QHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNS 368
           +  ILVGD  QL  ++    + +A   +SLFERL  LGH    L +QYRM+P +S FP++
Sbjct: 543 KQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSN 602

Query: 369 YFYENKILDAPTVRKRSYEKQFLPGPMYG-PYAFINVFGGREEFIE--HSCRNMVEVSVV 425
            FYE  + +  T+ +R+      P P+ G P  F   + GREE      S  N +E    
Sbjct: 603 MFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANY-GREEISANGTSFLNRIEAMNC 661

Query: 426 MKILLNL 432
            +I+  L
Sbjct: 662 ERIITKL 668
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Length = 624 Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Length = 446 Back     alignment and structure
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* Length = 1166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query610
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 100.0
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 100.0
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 100.0
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 100.0
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 98.39
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.26
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.02
3lfu_A 647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.96
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.6
1uaa_A 673 REP helicase, protein (ATP-dependent DNA helicase 96.87
1pjr_A 724 PCRA; DNA repair, DNA replication, SOS response, h 96.37
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 92.89
3lfu_A 647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 92.26
1w36_B 1180 RECB, exodeoxyribonuclease V beta chain; recombina 91.57
3iuy_A 228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 88.15
1uaa_A 673 REP helicase, protein (ATP-dependent DNA helicase 87.72
1pjr_A 724 PCRA; DNA repair, DNA replication, SOS response, h 86.66
3fmo_B 300 ATP-dependent RNA helicase DDX19B; nuclear porin, 85.08
3ly5_A 262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 84.36
1vec_A 206 ATP-dependent RNA helicase P54; DEAD-box protein, 84.21
2pl3_A 236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 84.05
3fe2_A 242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 83.65
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 82.14
1qde_A 224 EIF4A, translation initiation factor 4A; DEAD box 81.92
3dkp_A 245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 81.66
2gxq_A 207 Heat resistant RNA dependent ATPase; RNA helicase, 81.63
3ber_A 249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 80.64
3llm_A 235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 80.26
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
Probab=100.00  E-value=1e-41  Score=389.67  Aligned_cols=261  Identities=23%  Similarity=0.226  Sum_probs=204.2

Q ss_pred             HHHHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccc
Q 038017          253 LLKDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVS  329 (610)
Q Consensus       253 ~i~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~  329 (610)
                      ......+..++||++|+++++..   ..+....||+||||||+|++|+++++||.  +++++||||||+||||++.+..+
T Consensus       334 ~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a  411 (646)
T 4b3f_X          334 AAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKA  411 (646)
T ss_dssp             HHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHH
T ss_pred             HHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhh
Confidence            34556788999999999887643   23456689999999999999999999997  57999999999999999999888


Q ss_pred             cccccccCHHHHHHhcC--CCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccC---CCCCCCCeEEEEe
Q 038017          330 GEAYFGRSLFERLSYLG--HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFL---PGPMYGPYAFINV  404 (610)
Q Consensus       330 ~~~~l~~SLFeRL~~~g--~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~---~~~~~~p~~fidv  404 (610)
                      ...+++.|+|+||...+  .+.++|++||||||+|++|+|..||+|+|.+++++..+.......   ......|+.|+|+
T Consensus       412 ~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~  491 (646)
T 4b3f_X          412 ALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT  491 (646)
T ss_dssp             HHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEEC
T ss_pred             hhccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEec
Confidence            89999999999999764  556799999999999999999999999999999887655432211   1112358999999


Q ss_pred             CCCe----eeecCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeeccccccCCCCCccccccccccc
Q 038017          405 FGGR----EEFIEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYV  472 (610)
Q Consensus       405 ~~g~----e~~~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~~qg~  472 (610)
                      ..+.    ++..+.|+.|..||++|+++++.        ..|+|++||++|+..|+-. +.  ....++++.|||+|||+
T Consensus       492 ~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~-l~--~~~~~i~v~TVd~fQG~  568 (646)
T 4b3f_X          492 AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQS-LV--HRHPELEIKSVDGFQGR  568 (646)
T ss_dssp             TTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHH-HT--TTCTTCEEEEGGGGTTC
T ss_pred             CCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHH-HH--HhCCCCEECChhhcccc
Confidence            5431    22378899999999999999986        3688889999988888632 22  12356788999999999


Q ss_pred             ccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceE
Q 038017          473 ENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTF  527 (610)
Q Consensus       473 e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~  527 (610)
                      |    ++.++++.++++..+-++++ .+.+    ++|||+|||++.+|++|+...
T Consensus       569 E----~dvII~S~vrsn~~~~iGFl-~~~r----RlNVAlTRAk~~liivGn~~~  614 (646)
T 4b3f_X          569 E----KEAVILSFVRSNRKGEVGFL-AEDR----RINVAVTRARRHVAVICDSRT  614 (646)
T ss_dssp             C----EEEEEEECCCCCTTCCCCST-TCHH----HHHHHHHTEEEEEEEEECHHH
T ss_pred             c----CCEEEEEeccCCCCCCcccc-CCcC----cEEeEhhhhhCeEEEEEchHH
Confidence            9    55555666677776667765 4443    399999999999988866443
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query610
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.31
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.9
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.57
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 97.01
d1uaaa1 306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.12
d1pjra1 318 DEXX box DNA helicase {Bacillus stearothermophilus 96.0
g1qhh.1 623 DEXX box DNA helicase {Bacillus stearothermophilus 91.76
d1wrba1 238 putative ATP-dependent RNA helicase VlgB {Flatworm 86.52
d2p6ra3 202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 85.25
d1t6na_ 207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 83.62
d1gkub1 237 Helicase-like "domain" of reverse gyrase {Archaeon 83.33
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 81.16
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.1e-07  Score=98.28  Aligned_cols=45  Identities=29%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CCCcEEEEecCCCCChhHHHhhcc-CcCcceEEEeCCCCcCCcccc
Q 038017          281 EQLKFLVIDEAAQLKESESAIPLQ-LPCIQHAILVGDECQLPAMVE  325 (610)
Q Consensus       281 ~~fD~vIIDEAsQ~~E~e~lipL~-~~~~k~~ILvGD~~QLpP~v~  325 (610)
                      .++|+||||||||+.++.....+. .+...++||+||++||||+-.
T Consensus       260 l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~  305 (359)
T d1w36d1         260 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA  305 (359)
T ss_dssp             CSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTST
T ss_pred             cccceeeehhhhccCHHHHHHHHHHhcCCCEEEEECChhhccCCCC
Confidence            468999999999999875433332 234579999999999999843
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure