Citrus Sinensis ID: 038023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHcccHHccEEEEEEcHHHHHHHcccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
myqsggthaqiFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGdkllgsgsafigryfsnpryyfQVNDQYVQNKLKGHWMRAtetvkgkfcykppiddinapnlyiplMAFGTFVVLAGFFlgingkfspealgvqfTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV
Flexible Loop (DISEMBL)
myqsggthaqifqQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV
Low Complexity Region (SEG)
MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRhhllllvaiaqlpllFWLGNVGV
Disordered region (IsUnstruct)
**********************QFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNV**
Disordered Region (DISOPRED)
*****************************************A**********AFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATE*******Y**PIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILK*******************LLLLVAIAQLPLLFWLGNVGV
Disordered Region (DISEMBL)
**********IFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV
Disordered Region (DISPRO)
******THAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLKGHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q5U3G6	304	Protein YIF1B OS=Danio re	yes	no	0.929	0.782	0.301	1e-21
Q4FZQ0	300	Protein YIF1B-B OS=Xenopu	N/A	no	0.910	0.776	0.289	9e-21
Q6P301	300	Protein YIF1B OS=Xenopus	yes	no	0.910	0.776	0.285	3e-20
Q6GN58	300	Protein YIF1B-A OS=Xenopu	N/A	no	0.910	0.776	0.277	8e-20
Q5BJH7	314	Protein YIF1B OS=Homo sap	yes	no	0.945	0.770	0.290	1e-18
Q9CX30	311	Protein YIF1B OS=Mus musc	yes	no	0.824	0.678	0.309	7e-18
Q3T196	293	Protein YIF1A OS=Bos taur	no	no	0.738	0.645	0.295	2e-16
Q6PC24	307	Protein YIF1A OS=Danio re	no	no	0.812	0.677	0.300	4e-16
O95070	293	Protein YIF1A OS=Homo sap	no	no	0.839	0.733	0.276	1e-15
Q91XB7	293	Protein YIF1A OS=Mus musc	no	no	0.847	0.740	0.288	2e-15

>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 136/272 (50%), Gaps = 34/272 (12%)

Query: 9   AQIFQQTSTEQYKKQFGEALYG----AGSDLIKSELS----AYGDKLLGSGSAFIGRYF- 59
            Q+F  TS+   K + G         +G +L+   +S    AYG  L   G   + +   
Sbjct: 32  TQLFDDTSSGVNKHEPGRVGKSPDVFSGQNLLSDPMSNLAMAYGSSLASHGKEMMDKNLD 91

Query: 60  -----SNPRYYFQVNDQYVQNKL--------KGHWMRATETVKGKFCYKPPIDDINAPNL 106
                S  +YYF V+  YV  KL          +W    E    +     P  DINAP+L
Sbjct: 92  RFIPISKLKYYFAVDTVYVGKKLGLLVFPYMHDNW----EVNYQQDTPVAPRFDINAPDL 147

Query: 107 YIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEI 165
           YIP+M F T+V++AG  LG   +FSPE LG+Q ++ L+  + +VL +  +L+++  + ++
Sbjct: 148 YIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSALVWLIIEVLAVLLSLYLVTVNTDL 207

Query: 166 LLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILV 220
             +D+VA+SGY +V + + +VA ++     YY+  +W       F + TL +KIL     
Sbjct: 208 TTIDLVAFSGYKYVGMIVGVVAGLLFGRTGYYLALLWFCASIFVFTIRTLRLKILSEA-A 266

Query: 221 AEVRICEKHSSK-RHHLLLLVAIAQLPLLFWL 251
           AE R+     ++ R +L + +A AQ   ++WL
Sbjct: 267 AEGRLVRGTKNQLRMYLTMAIAAAQPVFMYWL 298

Danio rerio (taxid: 7955)

>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 23/256 (8%)

Query: 6   GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
           G  AQ F       +   +G +L   G +++   +    D+++           S  +YY
Sbjct: 52  GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98

Query: 66  FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
           F V+  YV  K   L   +M     V+  +     P  DINAP+LYIP+MAF T++++AG
Sbjct: 99  FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFITYILVAG 158

Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
             LG   +FSPE LG+Q ++ L   + +VL +  +L+++  + ++  +D+VA+SGY +V 
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVG 218

Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
           +   ++A ++     YYVV  W       F + TL +KIL       V +    +  R +
Sbjct: 219 MISGVIAGLLFGNTGYYVVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278

Query: 236 LLLLVAIAQLPLLFWL 251
           L + +A  Q   ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294

Xenopus laevis (taxid: 8355)

>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 23/256 (8%)

Query: 6   GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
           G  AQ F       +   +G +L   G +++   +    D+++           S  +YY
Sbjct: 52  GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98

Query: 66  FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
           F V+  YV  K   L   +M     V+  +     P  DINAP+LYIP+MAF T++++AG
Sbjct: 99  FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFITYILVAG 158

Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
             LG   +FSPE LG+Q ++ L   + +VL +  +L+++  + ++  +D+VA+SGY +V 
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVG 218

Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
           +   +++ ++     YYVV  W       F + TL +KIL       V +    +  R +
Sbjct: 219 MISGVISGLLFGKTGYYVVLSWCGISVVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278

Query: 236 LLLLVAIAQLPLLFWL 251
           L + +A  Q   ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294

Xenopus tropicalis (taxid: 8364)

>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 23/256 (8%)

Query: 6   GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
           G  AQ F       +   +G +L   G +++   +    D+++           S  +YY
Sbjct: 52  GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98

Query: 66  FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
           F V+  YV  K   L   +M     V+  +     P  DINAP+LYIP+MAF T++++AG
Sbjct: 99  FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFVTYILVAG 158

Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
             LG   +FSPE LG+Q ++ L   + +VL +  +L+++  + ++  +D+VA++GY +V 
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFTGYKYVG 218

Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
           +   +++ ++     YY+V  W       F + TL +KIL       V +    +  R +
Sbjct: 219 MISGVISGLLFGKTGYYIVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278

Query: 236 LLLLVAIAQLPLLFWL 251
           L + +A  Q   ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294

Xenopus laevis (taxid: 8355)

>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 30/272 (11%)

Query: 10  QIFQQTSTEQYK-----KQFGEALYGAGS---------DLIKSELSAYGDKLLGSGSAFI 55
           Q+F  TS+ Q +     +  G   Y A S         D + +   AYG  L   G   +
Sbjct: 37  QLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELV 96

Query: 56  GRYFSN--P----RYYFQVNDQYVQNKLK----GHWMRATETVKGKFCYKPPIDDINAPN 105
            +      P    +YYF V+  YV  KL      +  +  E    +     P  D+NAP+
Sbjct: 97  DKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPD 156

Query: 106 LYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGE 164
           LYIP MAF T+V++AG  LG   +FSP+ LG+Q ++ L     +VL +  +L+++  + +
Sbjct: 157 LYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTD 216

Query: 165 ILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRIL 219
           +  +D+VA+ GY +V +   ++  ++     YY+V  W       F + TL +KIL    
Sbjct: 217 LTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAA 276

Query: 220 VAEVRICEKHSSKRHHLLLLVAIAQLPLLFWL 251
              V +    +  R +L + VA AQ  L++WL
Sbjct: 277 AEGVPVRGARNQLRMYLTMAVAAAQPMLMYWL 308

Homo sapiens (taxid: 9606)

>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 15/226 (6%)

Query: 38  SELSAYGDKLLGSGSAFIGRYF--SNPRYYFQVNDQYVQNKLK----GHWMRATETVKGK 91
           S L+A G +L+      I R+   S  +YYF V+  YV  KL      +  +  E    +
Sbjct: 83  SSLAAQGKELVDKN---IDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQ 139

Query: 92  FCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151
                P  DINAP+LYIP MAF T++++AG  LG   +FSP+ LG+Q ++ L     +V+
Sbjct: 140 DTPVAPRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAWLTLEVV 199

Query: 152 LMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----F 205
            +  +L+++  + ++  +D+VA+ GY +V +   ++  ++     YY+V  W       F
Sbjct: 200 AILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVF 259

Query: 206 CMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWL 251
            + TL +KIL +     V +    +  R +L + VA AQ  L++WL
Sbjct: 260 MIRTLRLKILAQAAAEGVPVRGARNQLRMYLTMAVAAAQPVLMYWL 305

Mus musculus (taxid: 10090)

>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 63  RYYFQVNDQYVQNKLK----GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVV 118
           +Y+F V+  YV  KL      +  +  E    +    PP  D+NAP+LYIP MAF T+V+
Sbjct: 92  KYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVL 151

Query: 119 LAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYT 177
           LAG  LGI  +FSPE LG+  +  L+  + +VL +   +++     ++    ++AYSGY 
Sbjct: 152 LAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYK 211

Query: 178 FVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLL 237
           +V + ++++  ++     YYV   W S  +    V+ L+   +    +      +R  L 
Sbjct: 212 YVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAALGPDSMGGPAPRQRLQLY 271

Query: 238 LLVAIA--QLPLLFWL 251
           L +  A  Q  +++WL
Sbjct: 272 LTLGAAAFQPLIIYWL 287

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 115/246 (46%), Gaps = 38/246 (15%)

Query: 24  FGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFS--NPRYYFQVNDQYVQNKLK--- 78
           +G  L   G D++  E               I R+ S    +Y+F V+ +YV  KL    
Sbjct: 76  YGSTLANQGKDIVNKE---------------INRFMSVNKLKYFFAVDTKYVMKKLLLLM 120

Query: 79  -GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGV 137
             +  +  E    +     P  D+NAP+LYIP MAF T+++LAG  LGI  +FSPE LG+
Sbjct: 121 FPYTHQDWEVRYHRDTPLTPRHDVNAPDLYIPTMAFITYILLAGMALGIQKRFSPEVLGL 180

Query: 138 QFTNGLLCWLFQV-----LLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITC 192
             +  L+  + +V      L   T+H     ++   D+VAYSGY +V + + +   ++  
Sbjct: 181 CASTALVWMIIEVLVMLLSLYLLTVHT----DLSTFDLVAYSGYKYVGMILTVFCGLLFG 236

Query: 193 GYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QL 245
              YYV   W S     F + +L +KIL  I  A+       +  R  L + VA A  Q 
Sbjct: 237 SDGYYVALAWSSCALMFFIVRSLKMKILSSI-SADSMGAGASAKPRFRLYITVASAAFQP 295

Query: 246 PLLFWL 251
            +++WL
Sbjct: 296 FIIYWL 301

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 20/235 (8%)

Query: 24  FGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLK----G 79
           +G ++   G D++  EL  +                S  +Y+F V+  YV  KL      
Sbjct: 66  YGSSIASHGKDMVHKELHRFVS-------------VSKLKYFFAVDTAYVAKKLGLLVFP 112

Query: 80  HWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQF 139
           +  +  E    +    PP  D+NAP+LYIP MAF T+V+LAG  LGI  +FSPE LG+  
Sbjct: 113 YTHQNWEVQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCA 172

Query: 140 TNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYV 198
           +  L+  + +VL +   L++     ++    ++AYSGY +V + ++++  ++     YYV
Sbjct: 173 STALVWVVMEVLALLLGLYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYV 232

Query: 199 VSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QLPLLFWL 251
              W S  +    V+ L+   +    +      +R  L L +  A  Q  +++WL
Sbjct: 233 ALAWTSSALMYFIVRSLRTAALGPDSMGGPVPRQRLQLYLTLGAAAFQPLIIYWL 287

Possible role in transport between endoplasmic reticulum and Golgi.

Homo sapiens (taxid: 9606)

>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 15/232 (6%)

Query: 34  DLIKSELSAYGDKLLGSGSAFIGRYF------SNPRYYFQVNDQYVQNKLKGHWMRAT-E 86
           D + +   AYG  +   G   + +        +  +Y+F V+  YV  KL       T +
Sbjct: 57  DPVANMAMAYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116

Query: 87  TVKGKFCYK---PPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGL 143
             K ++ +    PP  D+NAP+LYIP MAF T+V+LAG  LGI  +FSPE LG+  +  L
Sbjct: 117 NWKMQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTAL 176

Query: 144 LCWLFQVLLMEATLHMLGD--GEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSV 201
           + W+F  +L       L     E+    ++AYSGY +V + ++++  ++     YYV   
Sbjct: 177 V-WVFMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALA 235

Query: 202 WKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QLPLLFWL 251
           W S  +    V+ L+        +      +R  L L +  A  Q  +++WL
Sbjct: 236 WTSSALMYFIVRSLRTAASGPDSMGGPAPRQRLQLYLTLGAAAFQPLIIYWL 287

Possible role in transport between endoplasmic reticulum and Golgi.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255577033	276	Protein YIF1A, putative [Ricinus communi	0.996	0.923	0.630	4e-94
225445846	272	PREDICTED: protein YIF1B [Vitis vinifera	0.964	0.908	0.622	2e-86
125547184	301	hypothetical protein OsI_14805 [Oryza sa	0.949	0.807	0.521	8e-75
357163450	269	PREDICTED: protein YIF1B-B-like [Brachyp	0.949	0.903	0.529	2e-74
115457064	280	Os04g0165400 [Oryza sativa Japonica Grou	0.949	0.867	0.513	3e-74
222628356	307	hypothetical protein OsJ_13777 [Oryza sa	0.949	0.791	0.513	3e-74
90265113	280	H0806H05.8 [Oryza sativa Indica Group]	0.949	0.867	0.513	1e-73
414877616	267	TPA: protein YIF1A isoform 1 [Zea mays]	0.988	0.947	0.503	1e-72
226499612	267	protein YIF1A [Zea mays] gi|195653933|gb	0.992	0.951	0.501	2e-72
195612668	267	protein YIF1A [Zea mays]	0.910	0.872	0.534	2e-72

>gi|255577033|ref|XP_002529401.1| Protein YIF1A, putative [Ricinus communis] gi|223531149|gb|EEF32997.1| Protein YIF1A, putative [Ricinus communis]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/273 (63%), Positives = 214/273 (78%), Gaps = 18/273 (6%)

Query: 1   MYQSGGTHAQIFQQTSTE-QYKKQFGEA--LYGAGSDLIKSELSAYGDKLLGSGSA---- 53
           MY + G+HAQ+F   S+  +    FGEA  +Y AGSD+I+SEL A+G+KLLG  +A    
Sbjct: 5   MYGNKGSHAQVFMSPSSSLKEADSFGEAAIIYQAGSDIIRSELGAFGEKLLGPSTAYVQS 64

Query: 54  -FIGRYFSNPRYYFQVNDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINA 103
            FI +Y SNP+YYFQVND+YV+NKLK         G+W+R+ E V G+  YKPPI DINA
Sbjct: 65  NFIRKYLSNPQYYFQVNDEYVKNKLKIILFPFLHRGYWVRSIEKVGGQVSYKPPIYDINA 124

Query: 104 PNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDG 163
           P+LYIP MAFGT++VLAG  LGINGKFSPEAL VQ TNGLLCW FQVLL+EATLH LG+G
Sbjct: 125 PDLYIPFMAFGTYLVLAGILLGINGKFSPEALSVQSTNGLLCWFFQVLLLEATLHTLGNG 184

Query: 164 EILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEV 223
           ++ LLD VAY+GYTF A S A++A+ + C +C+Y V++W+SFCMG  FVK++KRIL++E+
Sbjct: 185 DVPLLDFVAYTGYTFAAGSAAVLAR-MACRHCFYTVTLWESFCMGMFFVKVMKRILISEM 243

Query: 224 RICEKHSSKRHHLLLLVAIAQLPLLFWLGNVGV 256
           R CEKHSSKRH+LLLLVAIAQ PLLFWLGNVGV
Sbjct: 244 RSCEKHSSKRHYLLLLVAIAQAPLLFWLGNVGV 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445846|ref|XP_002275706.1| PREDICTED: protein YIF1B [Vitis vinifera] gi|297743654|emb|CBI36537.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/262 (62%), Positives = 199/262 (75%), Gaps = 15/262 (5%)

Query: 8   HAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPR 63
           H   F   S  Q    FGEAL GAGS L+K+EL A G+++LGSGSA+    IGRYFSNP 
Sbjct: 13  HTNTFGGMSIPQ-ASPFGEALSGAGSHLLKTELGACGERILGSGSAYMQTNIGRYFSNPH 71

Query: 64  YYFQVNDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFG 114
           YYFQVND+YV+NKLK         GHWMR  E   G+F +KPPI DINAP+LYIPLMAFG
Sbjct: 72  YYFQVNDEYVKNKLKVILFPFLHRGHWMRTNEASGGEFSFKPPIYDINAPDLYIPLMAFG 131

Query: 115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYS 174
           T +VLAGFFLGINGKFSPEALG+QF++GLL W  +VLL+EATLH LG G++ +LDVVAY 
Sbjct: 132 TNLVLAGFFLGINGKFSPEALGMQFSDGLLGWFLEVLLLEATLHSLGGGDVPILDVVAYG 191

Query: 175 GYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRH 234
           GYTF  +S+ L+AK+++  YC+Y V++W  FC G   VK +KRIL+AEV   EK+SSKR+
Sbjct: 192 GYTFTPLSVVLLAKIVS-SYCFYAVTLWGCFCTGVFLVKTIKRILIAEVTSYEKNSSKRN 250

Query: 235 HLLLLVAIAQLPLLFWLGNVGV 256
           +LLLLVA+ QLPLLFWLGN+ V
Sbjct: 251 YLLLLVAMTQLPLLFWLGNIRV 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547184|gb|EAY93006.1| hypothetical protein OsI_14805 [Oryza sativa Indica Group]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 178/257 (69%), Gaps = 14/257 (5%)

Query: 13  QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQV 68
           Q  S      QFG   YGA S LIK+ L AYG+K LGS S F    I RYFSNP+YYF V
Sbjct: 46  QMPSANPQPGQFGNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNINRYFSNPQYYFHV 105

Query: 69  NDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVL 119
           NDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LYIP MAFG+F++L
Sbjct: 106 NDQYVRNKLKVILFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFIIL 165

Query: 120 AGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFV 179
           AGF LG  GKF+PEA+ +QF+ GL+ W  Q+++++  L+ +G GE+ LLD+VAY GY F 
Sbjct: 166 AGFTLGFMGKFTPEAINLQFSRGLIGWALQIVILKGLLYSMGGGEVPLLDLVAYGGYLFA 225

Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLL 239
            +S+A+V++++   Y Y+V+  W S CMG   V+ +KR+L  E+R  E+HS+++H+ LL 
Sbjct: 226 GLSLAVVSRLLWA-YSYFVMMPWMSLCMGVFLVRTMKRVLFTEMRSSERHSTRQHYFLLF 284

Query: 240 VAIAQLPLLFWLGNVGV 256
           +AIAQ PL FWLGN+G 
Sbjct: 285 LAIAQFPLFFWLGNIGA 301

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163450|ref|XP_003579735.1| PREDICTED: protein YIF1B-B-like [Brachypodium distachyon]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 176/257 (68%), Gaps = 14/257 (5%)

Query: 13  QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQV 68
           Q   T     QF    YGA S LIK+ L AYG+K LGS S F    I RYFSNP+YYF V
Sbjct: 14  QMPPTNPQPGQFDNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNISRYFSNPQYYFHV 73

Query: 69  NDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVL 119
           NDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LYIP MAFGTF++L
Sbjct: 74  NDQYVRNKLKVILFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGTFIIL 133

Query: 120 AGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFV 179
           AGF LG  GKF+PEA+ +QFT GL+ W  Q++ ++  L+ +G GE+ LLD+VAY GY F 
Sbjct: 134 AGFTLGFMGKFTPEAINLQFTRGLIGWGLQIVFLKGLLYSMGGGEVPLLDLVAYGGYLFA 193

Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLL 239
            VS+A+VA+++   Y YY++  W S CMG   V+ +KR+L  E+R  E+HS+++H+ LL 
Sbjct: 194 GVSLAIVARLL-WAYSYYIMMPWMSLCMGVFLVRTMKRVLFTEMRGSERHSTRQHYFLLF 252

Query: 240 VAIAQLPLLFWLGNVGV 256
           +AIAQ PL FWLG++G 
Sbjct: 253 MAIAQFPLFFWLGSIGA 269

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457064|ref|NP_001052132.1| Os04g0165400 [Oryza sativa Japonica Group] gi|38346458|emb|CAE02114.2| OSJNBa0019G23.6 [Oryza sativa Japonica Group] gi|113563703|dbj|BAF14046.1| Os04g0165400 [Oryza sativa Japonica Group]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 178/257 (69%), Gaps = 14/257 (5%)

Query: 13  QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQV 68
           Q  S      QFG   YGA S LIK+ L AYG+K LGS S F    I RYFSNP+YYF V
Sbjct: 25  QMPSANPQPGQFGNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNINRYFSNPQYYFHV 84

Query: 69  NDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVL 119
           NDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LYIP MAFG+F++L
Sbjct: 85  NDQYVRNKLKVILFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFIIL 144

Query: 120 AGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFV 179
           AGF LG  GKF+PEA+ +QF+ GL+ W  Q+++++  L+ +G GE+ LLD+VAY GY F 
Sbjct: 145 AGFTLGFMGKFTPEAINLQFSRGLIGWALQIVILKGLLYSMGGGEVPLLDLVAYGGYLFA 204

Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLL 239
            +S+A++++++   Y Y+V+  W S CMG   V+ +KR+L  E+R  E+HS+++H+ LL 
Sbjct: 205 GLSLAVISRLLWA-YSYFVMMPWMSLCMGVFLVRTMKRVLFTEMRSSERHSTRQHYFLLF 263

Query: 240 VAIAQLPLLFWLGNVGV 256
           +AI+Q PL FWLGN+G 
Sbjct: 264 LAISQFPLFFWLGNIGA 280

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628356|gb|EEE60488.1| hypothetical protein OsJ_13777 [Oryza sativa Japonica Group]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 178/257 (69%), Gaps = 14/257 (5%)

Query: 13  QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQV 68
           Q  S      QFG   YGA S LIK+ L AYG+K LGS S F    I RYFSNP+YYF V
Sbjct: 52  QMPSANPQPGQFGNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNINRYFSNPQYYFHV 111

Query: 69  NDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVL 119
           NDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LYIP MAFG+F++L
Sbjct: 112 NDQYVRNKLKVILFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFIIL 171

Query: 120 AGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFV 179
           AGF LG  GKF+PEA+ +QF+ GL+ W  Q+++++  L+ +G GE+ LLD+VAY GY F 
Sbjct: 172 AGFTLGFMGKFTPEAINLQFSRGLIGWALQIVILKGLLYSMGGGEVPLLDLVAYGGYLFA 231

Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLL 239
            +S+A++++++   Y Y+V+  W S CMG   V+ +KR+L  E+R  E+HS+++H+ LL 
Sbjct: 232 GLSLAVISRLLWA-YSYFVMMPWMSLCMGVFLVRTMKRVLFTEMRSSERHSTRQHYFLLF 290

Query: 240 VAIAQLPLLFWLGNVGV 256
           +AI+Q PL FWLGN+G 
Sbjct: 291 LAISQFPLFFWLGNIGA 307

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265113|emb|CAC09475.2| H0806H05.8 [Oryza sativa Indica Group]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 177/257 (68%), Gaps = 14/257 (5%)

Query: 13  QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQV 68
           Q  S      QFG   YGA S LIK+ L AYG+K LGS S F    I RYFSNP+YYF V
Sbjct: 25  QMPSANPQPGQFGNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNINRYFSNPQYYFHV 84

Query: 69  NDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVL 119
           NDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LYIP MAFG+F++L
Sbjct: 85  NDQYVRNKLKVILFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFIIL 144

Query: 120 AGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFV 179
           AGF LG  GKF+PEA+ +QF+ GL+ W  Q+++++  L+ +G GE+ LLD+VAY GY F 
Sbjct: 145 AGFTLGFMGKFTPEAINLQFSRGLIGWALQIVILKGLLYSMGGGEVPLLDLVAYGGYLFA 204

Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLL 239
            +S+A+V++++   Y Y+V+  W S CMG   V+ +KR+L  E+R  E+HS+++H+ LL 
Sbjct: 205 GLSLAVVSRLLWA-YSYFVMMPWMSLCMGVFLVRTMKRVLFTEMRSSERHSTRQHYFLLF 263

Query: 240 VAIAQLPLLFWLGNVGV 256
           +AI+Q PL FWLG +G 
Sbjct: 264 LAISQFPLFFWLGKIGA 280

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414877616|tpg|DAA54747.1| TPA: protein YIF1A isoform 1 [Zea mays] gi|414877617|tpg|DAA54748.1| TPA: protein YIF1A isoform 2 [Zea mays]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/268 (50%), Positives = 181/268 (67%), Gaps = 15/268 (5%)

Query: 1   MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IG 56
           MY + G  + + Q         QF   LYGA S LI+S +  YG+K LGS S F    I 
Sbjct: 1   MYSNYGNPSGM-QMPPQNSQPVQFDNPLYGASSGLIRSGIGVYGEKFLGSSSEFMQSNIN 59

Query: 57  RYFSNPRYYFQVNDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLY 107
           RYFSNP+YYF VNDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LY
Sbjct: 60  RYFSNPQYYFHVNDQYVRNKLKVILFPFFHRGHWTRISEPVGGRLSYKPPIYDINAPDLY 119

Query: 108 IPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILL 167
           IP MAFG+F++L+GF LG  GKF+P A+ +QFT  L+ W FQ+++++  L+ +G GE+ L
Sbjct: 120 IPFMAFGSFIILSGFTLGFMGKFTPAAINLQFTRALIGWGFQLMVLKGLLYSMGGGEVPL 179

Query: 168 LDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE 227
           LD+VAY GY F  +S+A+VA+++   Y YYV+  W S CMG   V+ +KR+L  E+R  E
Sbjct: 180 LDLVAYGGYLFAGLSLAVVARLV-WAYSYYVMMPWMSLCMGVFLVRTMKRVLFTEMRSSE 238

Query: 228 KHSSKRHHLLLLVAIAQLPLLFWLGNVG 255
           +HSS++H+ LL +AIAQ PL FWLG++G
Sbjct: 239 RHSSRQHYFLLFMAIAQFPLFFWLGSIG 266

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499612|ref|NP_001152217.1| protein YIF1A [Zea mays] gi|195653933|gb|ACG46434.1| protein YIF1A [Zea mays]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/269 (50%), Positives = 181/269 (67%), Gaps = 15/269 (5%)

Query: 1   MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IG 56
           MY + G  + + Q         QF   LYGA S LI+S +  YG+K LGS S F    I 
Sbjct: 1   MYSNYGNPSGM-QMPPQNSQPVQFDNPLYGASSGLIRSGIGVYGEKFLGSSSEFMQSNIN 59

Query: 57  RYFSNPRYYFQVNDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLY 107
           RYFSNP+YYF VNDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LY
Sbjct: 60  RYFSNPQYYFHVNDQYVRNKLKVILFPFFHRGHWTRISEPVGGRLSYKPPIYDINAPDLY 119

Query: 108 IPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILL 167
           IP MAFG+F++L+GF LG  GKF+P A+ +QFT  L+ W FQ+++++  L+ +G GE+ L
Sbjct: 120 IPFMAFGSFIILSGFTLGFMGKFTPAAINLQFTRALIGWGFQLMVLKGLLYSMGGGEVPL 179

Query: 168 LDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE 227
           LD+VAY GY F  +S+A+VA+++   Y YYV+  W S CMG   V+ +KR+L  E+R  E
Sbjct: 180 LDLVAYGGYLFAGLSLAVVARLM-WAYSYYVMMPWMSLCMGVFLVRTMKRVLFTEMRSSE 238

Query: 228 KHSSKRHHLLLLVAIAQLPLLFWLGNVGV 256
           +HSS++H+ LL +AIAQ PL FWLG++G 
Sbjct: 239 RHSSRQHYFLLFMAIAQFPLFFWLGSIGA 267

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195612668|gb|ACG28164.1| protein YIF1A [Zea mays]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/247 (53%), Positives = 174/247 (70%), Gaps = 14/247 (5%)

Query: 23  QFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQVNDQYVQNKLK 78
           QF   LYGA S LI+S +  YG+K LGS S F    I RYFSNP+YYF VNDQYV+NKLK
Sbjct: 22  QFDNPLYGASSGLIRSGIGVYGEKFLGSSSEFMQSNINRYFSNPQYYFHVNDQYVRNKLK 81

Query: 79  ---------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGK 129
                    GHW R +E V G+  YKPPI DINAP+LYIP MAFG+F++L+GF LG  GK
Sbjct: 82  VILFPFFHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFIILSGFTLGFMGK 141

Query: 130 FSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKV 189
           F+PEA+ +QFT  L+ W FQ+ +++  L+ +G GE+ LLD+VAY GY F  +S+A+VA++
Sbjct: 142 FTPEAINLQFTRALIGWGFQLTVLKGLLYSMGGGEVPLLDLVAYGGYLFAGLSLAVVARL 201

Query: 190 ITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLF 249
           +   Y YYV+  W S CMG   V+ +KR+L  E+R  E+HSS++H+ LL +AI Q PL F
Sbjct: 202 V-WAYSYYVMMPWMSLCMGVFLVRTMKRVLFTEMRSSERHSSRQHYFLLFMAIVQFPLFF 260

Query: 250 WLGNVGV 256
           WLG++GV
Sbjct: 261 WLGSIGV 267

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2097583	269	AT3G59500 [Arabidopsis thalian	0.984	0.936	0.479	5.7e-59
TAIR|locus:2015716	269	AT1G30890 "AT1G30890" [Arabido	0.898	0.855	0.508	2.5e-58
CGD|CAL0004032	300	orf19.6642 [Candida albicans (	0.535	0.456	0.331	2.9e-22
UNIPROTKB|Q59PS2	300	YIF1 "Putative uncharacterized	0.535	0.456	0.331	2.9e-22
ASPGD|ASPL0000002038	355	AN6628 [Emericella nidulans (t	0.390	0.281	0.382	8.1e-21
ZFIN|ZDB-GENE-030131-6922	307	yif1a "Yip1 interacting factor	0.746	0.622	0.316	2.1e-20
ZFIN|ZDB-GENE-041114-16	304	yif1b "Yip1 interacting factor	0.710	0.598	0.328	7.2e-20
FB|FBgn0039450	402	CG5484 [Drosophila melanogaste	0.726	0.462	0.268	2.3e-19
MGI|MGI:1915340	293	Yif1a "Yip1 interacting factor	0.710	0.621	0.328	8.3e-19
UNIPROTKB|G4NJF3	322	MGG_12628 "Hrf1 domain-contain	0.808	0.642	0.299	7.5e-18

TAIR|locus:2097583 AT3G59500 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 129/269 (47%), Positives = 163/269 (60%)

Query:     1 MYQSGGTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IG 56
             MY + G    +    +  Q    FG    G GS LI+S L AYG+K+ GS S +    I 
Sbjct:     1 MYNNMGPRPGMAMPQANPQ-PSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNIS 59

Query:    57 RYFSNPRYYFQVNDQYVQNKLK---------GHWMRATETVKGKFCYKPPIDDINAPNLY 107
             RYFS+P+YYFQVNDQYV+NKLK         GHW R +E V G+  YKPPI DINAP+LY
Sbjct:    60 RYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLY 119

Query:   108 IPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILL 167
             IPLMAFGT+VVLAG  LG+ GKF+PEAL   F  G++ W  QV+L++ TL  LG GE  L
Sbjct:   120 IPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAPL 179

Query:   168 LDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE 227
             LD+VAY+GYTF  + +A++ K+I  GY YYV+  W   C G   VK +KR+L AE R  +
Sbjct:   180 LDIVAYAGYTFTGLCLAVLGKIIW-GYSYYVLIPWTCLCTGVFLVKTMKRVLFAESRSYD 238

Query:   228 KHSSKRXXXXXXXXXXXXXXXFWLGNVGV 256
               SS+                 WLGN+ V
Sbjct:   239 --SSRHHYLLIFVALAQFPLLIWLGNISV 265

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2015716 AT1G30890 "AT1G30890" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 125/246 (50%), Positives = 153/246 (62%)

Query:    24 FGEALYGAGSDLIKSELSAYGDKLLGSGSAF----IGRYFSNPRYYFQVNDQYVQNKLK- 78
             FG    GAGS  I+  L AYG+++LGS S +    I RYFS+P+YYFQVNDQYV+NKLK 
Sbjct:    23 FGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKV 82

Query:    79 --------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKF 130
                     GHW R +E V G+  YKPPI DINAP+LYIP MAFGT+VVLAG  LG+NGKF
Sbjct:    83 VLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGLSLGLNGKF 142

Query:   131 SPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVI 190
             +PEAL   F  GL+ W  QV+L++ TL  LG GE  LLD+VAY GY F  + +A  AK++
Sbjct:   143 TPEALNWLFVKGLVGWFLQVMLLKVTLLSLGSGEAPLLDIVAYGGYAFAGLCLAGFAKIM 202

Query:   191 TCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRXXXXXXXXXXXXXXXFW 250
               GY YY +  W   C G   VK +KR+L AEVR  +  SSK                 W
Sbjct:   203 W-GYSYYALMPWTCLCTGIFLVKTMKRVLFAEVRSYD--SSKHHYLLLFLALVQFPLLIW 259

Query:   251 LGNVGV 256
             LGN+ V
Sbjct:   260 LGNISV 265

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=RCA

CGD|CAL0004032 orf19.6642 [Candida albicans (taxid:5476)]

 Score = 226 (84.6 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 49/148 (33%), Positives = 83/148 (56%)

Query:    63 RYYFQVNDQYVQNKL------KGH--WMRATETVKGKFCYKPPIDDINAPNLYIPLMAFG 114
             +YYFQV++ YV  K+        H  W R +    G   + PP  DINAP+LY+PLM+F 
Sbjct:    93 KYYFQVSNSYVFKKIILILMPYNHKDWNRVSTKETGTNQFLPPNLDINAPDLYLPLMSFV 152

Query:   115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYS 174
             T+++L   F GING F P+  G   +  +   +  V++ +  L++L   +  + D++++S
Sbjct:   153 TYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGLYLLNCPQSKIYDIISFS 212

Query:   175 GYTFVAVSIALVAKVITCGYC---YYVV 199
             GY +V++ + L+ K +   Y    YY+V
Sbjct:   213 GYKYVSIIVLLILKYLVGNYLGLFYYIV 240

GO:0003674 "molecular_function" evidence=ND

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q59PS2 YIF1 "Putative uncharacterized protein YIF1" [Candida albicans SC5314 (taxid:237561)]

 Score = 226 (84.6 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 49/148 (33%), Positives = 83/148 (56%)

Query:    63 RYYFQVNDQYVQNKL------KGH--WMRATETVKGKFCYKPPIDDINAPNLYIPLMAFG 114
             +YYFQV++ YV  K+        H  W R +    G   + PP  DINAP+LY+PLM+F 
Sbjct:    93 KYYFQVSNSYVFKKIILILMPYNHKDWNRVSTKETGTNQFLPPNLDINAPDLYLPLMSFV 152

Query:   115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYS 174
             T+++L   F GING F P+  G   +  +   +  V++ +  L++L   +  + D++++S
Sbjct:   153 TYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGLYLLNCPQSKIYDIISFS 212

Query:   175 GYTFVAVSIALVAKVITCGYC---YYVV 199
             GY +V++ + L+ K +   Y    YY+V
Sbjct:   213 GYKYVSIIVLLILKYLVGNYLGLFYYIV 240

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000002038 AN6628 [Emericella nidulans (taxid:162425)]

 Score = 211 (79.3 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
 Identities = 39/102 (38%), Positives = 67/102 (65%)

Query:    94 YKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLM 153
             + PP DDIN+P++YIP+MA  T+++L+    G  G F PE LG   T  +   +F+++ +
Sbjct:   160 FLPPRDDINSPDMYIPVMALVTYILLSAMLAGFRGNFHPELLGATTTTAIAVIVFEIICL 219

Query:   154 EATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVA-KVITCG 193
             +  +++L  + +  L+D+VAYSGY FV + + LVA +++T G
Sbjct:   220 KLAMYILSINNDSQLVDLVAYSGYKFVGIIVTLVASEILTPG 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IEA

ZFIN|ZDB-GENE-030131-6922 yif1a "Yip1 interacting factor homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 64/202 (31%), Positives = 107/202 (52%)

Query:    33 SDLIKSELSAYGDKLLGSGSAF----IGRYFS-NP-RYYFQVNDQYVQNKLKGHWMRAT- 85
             +D + +    YG  L   G       I R+ S N  +Y+F V+ +YV  KL       T 
Sbjct:    66 ADPMANAAMMYGSTLANQGKDIVNKEINRFMSVNKLKYFFAVDTKYVMKKLLLLMFPYTH 125

Query:    86 ETVKGKFCYKPPID---DINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNG 142
             +  + ++    P+    D+NAP+LYIP MAF T+++LAG  LGI  +FSPE LG+  +  
Sbjct:   126 QDWEVRYHRDTPLTPRHDVNAPDLYIPTMAFITYILLAGMALGIQKRFSPEVLGLCASTA 185

Query:   143 LLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSV 201
             L+  + +VL+M  +L++L    ++   D+VAYSGY +V + + +   ++     YYV   
Sbjct:   186 LVWMIIEVLVMLLSLYLLTVHTDLSTFDLVAYSGYKYVGMILTVFCGLLFGSDGYYVALA 245

Query:   202 WKSFCMGTLFVKILKRILVAEV 223
             W S  +    V+ LK  +++ +
Sbjct:   246 WSSCALMFFIVRSLKMKILSSI 267

GO:0003674 "molecular_function" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-16 yif1b "Yip1 interacting factor homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 65/198 (32%), Positives = 110/198 (55%)

Query:    33 SDLIKSELSAYGDKLLGSGSAF----IGRYF--SNPRYYFQVNDQYVQNKLKGHWMRATE 86
             SD + +   AYG  L   G       + R+   S  +YYF V+  YV  KL G  +    
Sbjct:    64 SDPMSNLAMAYGSSLASHGKEMMDKNLDRFIPISKLKYYFAVDTVYVGKKL-GLLVFPYM 122

Query:    87 TVKGKFCYK---P--PIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTN 141
                 +  Y+   P  P  DINAP+LYIP+M F T+V++AG  LG   +FSPE LG+Q ++
Sbjct:   123 HDNWEVNYQQDTPVAPRFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASS 182

Query:   142 GLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVS 200
              L+  + +VL +  +L+++  + ++  +D+VA+SGY +V + + +VA ++     YY+  
Sbjct:   183 ALVWLIIEVLAVLLSLYLVTVNTDLTTIDLVAFSGYKYVGMIVGVVAGLLFGRTGYYLAL 242

Query:   201 VWKSFCMGTLFVKILKRI 218
             +W  FC  ++FV  ++ +
Sbjct:   243 LW--FC-ASIFVFTIRTL 257

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039450 CG5484 [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 54/201 (26%), Positives = 107/201 (53%)

Query:    35 LIKSELSAYGDKLLGSGSAFIGRYFSN--P----RYYFQVNDQYVQNKLK---GHWMRAT 85
             +++     YG KL   G   +   F    P    +YYF V++ YV  KL+     +M   
Sbjct:   138 IVQDMAMQYGQKLADQGKQIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKD 197

Query:    86 ETVKGKFCYKPPID---DINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNG 142
              +++  +  + P+    D+NAP+LY+P M + T+V++AG  LG+  +FSPE LG+Q ++ 
Sbjct:   198 WSLR--YDQEHPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSA 255

Query:   143 LLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSV 201
             +   +F++++    L+++     +  LD++A++GY +V + + L+   +     YY+   
Sbjct:   256 MAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLFFKSGYYIALA 315

Query:   202 WKSFCMGTLFVKILKRILVAE 222
             + SF  G   ++ L+  L+ +
Sbjct:   316 YTSFSFGFFMLRTLRTKLLQD 336

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

MGI|MGI:1915340 Yif1a "Yip1 interacting factor homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 64/195 (32%), Positives = 103/195 (52%)

Query:    34 DLIKSELSAYGDKLLGSGSAFIG----RYFS-NP-RYYFQVNDQYVQNKLKGHWMRAT-E 86
             D + +   AYG  +   G   +     R+ S N  +Y+F V+  YV  KL       T +
Sbjct:    57 DPVANMAMAYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116

Query:    87 TVKGKFCYK---PPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGL 143
               K ++ +    PP  D+NAP+LYIP MAF T+V+LAG  LGI  +FSPE LG+  +  L
Sbjct:   117 NWKMQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTAL 176

Query:   144 LCWLF-QVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSV 201
             + W+F +VL +   L++     E+    ++AYSGY +V + ++++  ++     YYV   
Sbjct:   177 V-WVFMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALA 235

Query:   202 WKSFCMGTLFVKILK 216
             W S  +    V+ L+
Sbjct:   236 WTSSALMYFIVRSLR 250

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|G4NJF3 MGG_12628 "Hrf1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 70/234 (29%), Positives = 120/234 (51%)

Query:    13 QQTSTEQYKKQFGEALYGAGSDLIKSELSA-YGDKLLGSGSAFI----GRYFSNP--RYY 65
             QQ      +  FG+  YG   +   ++++A +G      G   I     RY S    ++Y
Sbjct:    52 QQQGGAGPQNMFGQ--YGQFMNDPAAQVAAHFGSTAFRQGQEIIDQNINRYLSVHLLKHY 109

Query:    66 FQVNDQYVQNKLK------GH--WMRATETVKG-KFCYKPPIDDINAPNLYIPLMAFGTF 116
             F V + YV NK+        H  W R      G +  Y PP DD+N+P++YIP+M+  T+
Sbjct:   110 FNVTNSYVINKIYLVLFPWRHKPWSRKPAMGPGGQEGYLPPRDDVNSPDMYIPVMSLVTY 169

Query:   117 VVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSG 175
             ++L+    G+ G+F PE LG      L+    ++++++   +++       LLD+VAYSG
Sbjct:   170 ILLSTAIAGLRGQFQPELLGNTAGTALIVVAAEIIILKLGCYIMSISNNSQLLDLVAYSG 229

Query:   176 YTFVAVSIAL-VAKVI-----TCGYCYYVVSVWKSFCMGTLFV-KILKRILVAE 222
             Y FV V + + VA+V+     T G+  + V ++ +F   +LF+ + LK +L+ E
Sbjct:   230 YKFVGVIVTVAVAEVMNGGKGTGGWSGWSVFIY-TFLANSLFLMRSLKYVLLPE 282

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam03878	240	pfam03878, YIF1, YIF1	1e-53
COG5197	284	COG5197, COG5197, Predicted membrane protein [Func	8e-25

>gnl|CDD|217776 pfam03878, YIF1, YIF1

 Score =  173 bits (440), Expect = 1e-53
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 17/228 (7%)

Query: 42  AYGDKLLGSGSAF----IGRYFSNPR--YYFQVNDQYVQNKLK---GHWMRATETVK-GK 91
            YG  +   G  +      R+ S  +  YYF V+  YV NKLK     ++         +
Sbjct: 13  QYGQSIANQGKEYVEKNFSRWVSVSKLKYYFAVDTAYVGNKLKLLLFPYLHRDWERIYDR 72

Query: 92  FCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151
               PP  D+NAP+LYIP MAF T+++LAG  LG+ G+FSPE LG+Q ++ L     +VL
Sbjct: 73  ESPLPPRYDVNAPDLYIPTMAFITYILLAGLLLGLQGRFSPELLGLQASSALAWVFLEVL 132

Query: 152 LMEATLHMLGD-GEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTL 210
            ++  L++L     +  LD++AYSGY FV + +A++ K++   Y YY+V  +     G  
Sbjct: 133 ALKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAVLTKLLFGPYGYYLVLAYTCLATGFF 192

Query: 211 FVKILKR-ILVAEVR----ICEKHSSKRHH-LLLLVAIAQLPLLFWLG 252
            ++ LK  +L A              K+    L  +A  Q   L+WL 
Sbjct: 193 LLRSLKTALLSAPAAAYGAPVISSQRKKRLYFLFFIAAVQPLFLYWLS 240

YIF1 (Yip1 interacting factor) is an integral membrane protein that is required for membrane fusion of ER derived vesicles. It also plays a role in the biogenesis of ER derived COPII transport vesicles. Length = 240

>gnl|CDD|227524 COG5197, COG5197, Predicted membrane protein [Function unknown]

 Score = 99.2 bits (247), Expect = 8e-25
 Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 19/205 (9%)

Query: 63  RYYFQVNDQYVQNKLK--------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFG 114
             YFQV+++YV NKLK         +W R  ++    F   PP DD+N+P++Y+P+M F 
Sbjct: 84  STYFQVSNRYVINKLKLILFPFLNKNWQRIGDS--EGFL--PPRDDVNSPDMYMPIMGFV 139

Query: 115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEI-LLLDVVAY 173
           T+++L     G+ G F+PE LG + ++ L      +L+    L++L D +I   LD++AY
Sbjct: 140 TYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAY 199

Query: 174 SGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAE------VRICE 227
           SGY FV + +A + K +T  +   ++  +     G   ++ LK  +++         I +
Sbjct: 200 SGYKFVPLILAQLLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISK 259

Query: 228 KHSSKRHHLLLLVAIAQLPLLFWLG 252
               +R++ L ++ I Q  L++ L 
Sbjct: 260 STRKRRNYFLFVIFIWQNVLMWLLS 284

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG3094	284	consensus Predicted membrane protein [Function unk	100.0
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	100.0
COG5197	284	Predicted membrane protein [Function unknown]	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	98.56
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	96.95
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	95.08
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	90.67
KOG2946	234	consensus Uncharacterized conserved protein [Funct	81.35

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.1e-74  Score=517.71  Aligned_cols=231  Identities=40%  Similarity=0.762  Sum_probs=212.6

Q ss_pred             ccCCccCccccccCchhHHHHHH---------HHHHHHHhhHHHH----HhhhcC--CCccceecChHHHHHHhc-----
Q 038023           19 QYKKQFGEALYGAGSDLIKSELS---------AYGDKLLGSGSAF----IGRYFS--NPRYYFQVNDQYVQNKLK-----   78 (256)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~---------~yG~~~~~~g~~y----~~~~~~--~lk~YF~V~nsYV~~KL~-----   78 (256)
                      |.+.|+||+..|.|+++.++++.         +|||+++++|+||    ++||++  ++||||+|||+||.|||+     
T Consensus        28 p~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfP  107 (284)
T KOG3094|consen   28 PTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFP  107 (284)
T ss_pred             CCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEechHHHhhhheEEEee
Confidence            45567999998877665555444         9999999999999    666766  789999999999999999     


Q ss_pred             ---ccccccccccCCcccCCCCccCCCCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 038023           79 ---GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEA  155 (256)
Q Consensus        79 ---k~W~r~~e~~~g~~~~~pPr~DinaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~  155 (256)
                         |+|+|+.|.    +.|+|||+|+||||||||+|+|+||||++|+.+|++|+|+||.||+.+|+++++|++|++++|+
T Consensus       108 f~hk~W~~~~~~----~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~~~s~al~~v~le~l~l~l  183 (284)
T KOG3094|consen  108 FLHKDWTRIYER----ESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGILASKALAWVILEVLLLKL  183 (284)
T ss_pred             ecCcchhhhhcc----cCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               899999883    4599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc-CCCcchhheeeecCchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccCcc
Q 038023          156 TLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE--KHSSK  232 (256)
Q Consensus       156 ~~Y~l~-~~~~~~lDlvaysGYKfV~i~v~ll~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~~~~--~~~~r  232 (256)
                      ++|+++ +++.+++|++||+|||||++|++.+.+++++.+.||+++.|+++|.++||+||||+.+++|.++.+  .+++|
T Consensus       184 ~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~~yyi~~~yt~~a~gvFLlRSlK~~ll~~~~~~~~v~q~~r  263 (284)
T KOG3094|consen  184 GLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPYGYYIALAYTYLAFGVFLLRSLKRALLAESSMADPVPQSSR  263 (284)
T ss_pred             HHheecccCCcchhHhhhhcccchHHHHHHHHhhheecchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCccchhhh
Confidence            999999 589999999999999999999999999999999999999999999999999999999999976543  34789


Q ss_pred             chhhHHHHHHHHHHHHHHhcc
Q 038023          233 RHHLLLLVAIAQLPLLFWLGN  253 (256)
Q Consensus       233 ~~yfll~~a~~Q~~l~~wL~~  253 (256)
                      |+||||++|++|+++++||++
T Consensus       264 ~~YfLf~ia~~Q~~~l~wLs~  284 (284)
T KOG3094|consen  264 RLYFLFFIAAVQFLILYWLSN  284 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999974

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=100.00  E-value=1.8e-73  Score=512.62  Aligned_cols=210  Identities=40%  Similarity=0.831  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHhhHHHH----HhhhcC--CCccceecChHHHHHHhc--------ccccccccccCCcccCCCCccCCCCC
Q 038023           39 ELSAYGDKLLGSGSAF----IGRYFS--NPRYYFQVNDQYVQNKLK--------GHWMRATETVKGKFCYKPPIDDINAP  104 (256)
Q Consensus        39 ~~~~yG~~~~~~g~~y----~~~~~~--~lk~YF~V~nsYV~~KL~--------k~W~r~~e~~~g~~~~~pPr~DinaP  104 (256)
                      ...||||+++++|+||    ++||++  .+||||||||+||+|||+        |+|+|+.|    ++.++|||+|+|||
T Consensus        10 m~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~----~~~~~~Pr~DvNAP   85 (240)
T PF03878_consen   10 MAMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYE----QESYLPPREDVNAP   85 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccCCcccccc----ccCCCCchhhccCc
Confidence            4489999999999999    566766  799999999999999999        88999887    34699999999999


Q ss_pred             ccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhheeeecCchHHHHHH
Q 038023          105 NLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSI  183 (256)
Q Consensus       105 DLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~-~~~~~~lDlvaysGYKfV~i~v  183 (256)
                      |||||+||++||||++|+.+|++|+||||.||.++|+|+++|++|++++|+++|+++ +++.|++|++||+|||||++|+
T Consensus        86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~  165 (240)
T PF03878_consen   86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIIL  165 (240)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 5899999999999999999999


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhc-----ccCccchhhHHHHHHHHHHHHHHhc
Q 038023          184 ALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVR-ICE-----KHSSKRHHLLLLVAIAQLPLLFWLG  252 (256)
Q Consensus       184 ~ll~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~-~~~-----~~~~r~~yfll~~a~~Q~~l~~wL~  252 (256)
                      +++++++.+++.||++++|+++|+++|++||||+.++|+.. +++     ++++||+||||++|++|+|++||||
T Consensus       166 ~~l~~~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~i~~~~~~~~~~~~~~~~~~~r~yfL~~~a~~Q~~l~~wLt  240 (240)
T PF03878_consen  166 TLLASLLFGSWVYYIALLYTSFANAFFLLRSLKRVILPSPSSSYGSVSSSSQRKRRNYFLFFIAIVQPPLMFWLT  240 (240)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeehhHHHHHHHHHHHHHHhhC
Confidence            99999988899999999999999999999999999996433 222     4578999999999999999999996

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>COG5197 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4.9e-56  Score=392.35  Aligned_cols=207  Identities=28%  Similarity=0.507  Sum_probs=186.4

Q ss_pred             HHHHHHHHhhHHHHHhhhcC------CCccceecChHHHHHHhc--------ccccccccccCCcccCCCCccCCCCCcc
Q 038023           41 SAYGDKLLGSGSAFIGRYFS------NPRYYFQVNDQYVQNKLK--------GHWMRATETVKGKFCYKPPIDDINAPNL  106 (256)
Q Consensus        41 ~~yG~~~~~~g~~y~~~~~~------~lk~YF~V~nsYV~~KL~--------k~W~r~~e~~~g~~~~~pPr~DinaPDL  106 (256)
                      -+.||.++++++||++|-+.      .+++||+|||+||.+||+        |+|+|.    +..++|+|||||+|+|||
T Consensus        56 ~~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~----gd~eg~~pp~~d~nsPdm  131 (284)
T COG5197          56 NFIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRI----GDSEGFLPPRDDVNSPDM  131 (284)
T ss_pred             HHHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccchhhhc----cCCCCCCCchhhcCCccc
Confidence            45899999999999877653      789999999999999999        888884    334569999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhheeeecCchHHHHHHHH
Q 038023          107 YIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIAL  185 (256)
Q Consensus       107 YIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~-~~~~~~lDlvaysGYKfV~i~v~l  185 (256)
                      |+|+|+|+||||+++..+|++|.|+||.||..+|++++...+|+++.|++||+++ +...+++|++||+|||||+++++-
T Consensus       132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~q  211 (284)
T COG5197         132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQ  211 (284)
T ss_pred             cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 556679999999999999999999


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcccCccchhhHHHHHHHHHHHHHHh
Q 038023          186 VAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRI------CEKHSSKRHHLLLLVAIAQLPLLFWL  251 (256)
Q Consensus       186 l~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~~------~~~~~~r~~yfll~~a~~Q~~l~~wL  251 (256)
                      +.+.+.-.|.--+...|..+|.++||+||||+.++++...      ..++++||+||||++++.|..+||-|
T Consensus       212 L~k~~~Mp~v~~i~~~Ylyiaf~vFLlRSlK~~vl~~s~~~i~asis~~~r~rr~YfLF~i~i~Q~~~m~ll  283 (284)
T COG5197         212 LLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISKSTRKRRNYFLFVIFIWQNVLMWLL  283 (284)
T ss_pred             HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeeechhhhhheeeeeehHHHHHHHHHHhh
Confidence            9887667787778889999999999999999999998632      13457899999999999998777655

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=1.8e-06  Score=80.24  Aligned_cols=146  Identities=18%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             CCCccceecChHHHHHHhcccccc-c--ccccCCcccCCCCccCCCCCccccchHHHHHHHHHHHHHH---------hhc
Q 038023           60 SNPRYYFQVNDQYVQNKLKGHWMR-A--TETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFL---------GIN  127 (256)
Q Consensus        60 ~~lk~YF~V~nsYV~~KL~k~W~r-~--~e~~~g~~~~~pPr~DinaPDLYIPlMa~vTYILl~~~~~---------G~~  127 (256)
                      +..|+|||||++-|++||+.+-.. +  .|+.            -+.||||.|.|...|-|-+.+...         +.+
T Consensus        78 ~yyq~fFdVDt~qV~~Rl~~SliP~~~~~~~~------------~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~  145 (290)
T KOG3114|consen   78 EYYQPFFDVDTAQVRKRLKESLIPRNYVRDQI------------QDNPDLYGPFWITATLVFALAISGNLATFIRNGTLK  145 (290)
T ss_pred             HhhccccCCCHHHHHHHHHHhcCCcccccccc------------CCCccccccHHHHHHHHHHHHHcccHHHHHHhcccc
Confidence            367999999999999999944221 1  1211            157999999999999887665533         223


Q ss_pred             C-----CCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhc---cCCCcchhheeeecCchHHHHHHHHHHHHHhcchhHHH
Q 038023          128 G-----KFSPEALGVQFTNGLLC-WLFQVLLMEATLHML---GDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYV  198 (256)
Q Consensus       128 g-----~F~PE~Lg~~~s~~l~~-~~~E~~i~k~~~Y~l---~~~~~~~lDlvaysGYKfV~i~v~ll~~~l~~~~~yy~  198 (256)
                      |     .|+  .+...++...+. ++++.++.-+..+.=   +..-..++|+++.-||.-.-.+-+++..++-.++.=|+
T Consensus       146 g~~~g~~f~--~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wv  223 (290)
T KOG3114|consen  146 GTAYGYDFG--LVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWV  223 (290)
T ss_pred             ceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHH
Confidence            3     244  222222222111 223443333333322   12234689999999999555555555555444545454


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 038023          199 VSVWKSFCMGTLFVKILKRIL  219 (256)
Q Consensus       199 ~~~y~~~a~~~FllRsLk~~i  219 (256)
                      .-.-.....+.||.+++.-.+
T Consensus       224 l~~~~~~~S~~~L~~~l~p~~  244 (290)
T KOG3114|consen  224 LVGTALGLSGTFLAGTLWPAV  244 (290)
T ss_pred             HHHHHHHHhHHHHHHHHHHHH
Confidence            444444455677777776543

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=96.95  E-value=0.013  Score=47.80  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             CCCCCccccchHHHHHHHHHHHHHHhhcCCCCcc---------h-HHHHHHHH---HHHHHHHHHHHHHHHHhccCCCcc
Q 038023          100 DINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPE---------A-LGVQFTNG---LLCWLFQVLLMEATLHMLGDGEIL  166 (256)
Q Consensus       100 DinaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE---------~-Lg~~~s~~---l~~~~~E~~i~k~~~Y~l~~~~~~  166 (256)
                      +.+.+|+|.|++++++.+..........+.+.++         . ++......   ++.+++-..+++..+.+++ ++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~   96 (172)
T PF04893_consen   18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS   96 (172)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence            3467999999999999987777765444444433         1 11111111   2334444555555555565 7889


Q ss_pred             hhheeeecCchHHHHHHHHHHHHHh
Q 038023          167 LLDVVAYSGYTFVAVSIALVAKVIT  191 (256)
Q Consensus       167 ~lDlvaysGYKfV~i~v~ll~~~l~  191 (256)
                      +-|..+..||..++.++..+...+.
T Consensus        97 ~~~~~~~~~ya~~P~~~~~~~~~~~  121 (172)
T PF04893_consen   97 FKETFSVVGYALIPLLLGSLISIIL  121 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998777654

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=95.08  E-value=0.17  Score=45.73  Aligned_cols=101  Identities=22%  Similarity=0.458  Sum_probs=66.8

Q ss_pred             CCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHHH
Q 038023          102 NAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAV  181 (256)
Q Consensus       102 naPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~i  181 (256)
                      +.-||--|+.    |++|-++.+-+++|=   ..|.    ..++..+-.+.+.+.+-+++..+++++.-++..||.+.++
T Consensus        92 ~d~DL~gPli----F~lL~sLfLsla~~s---hFgy----iy~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPl  160 (227)
T COG5080          92 ADCDLWGPLI----FILLYSLFLSLAGKS---HFGY----IYGISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPL  160 (227)
T ss_pred             hcccccccHH----HHHHHHHHHHhcccc---eeeh----hhHHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHH
Confidence            5689999975    566667777777772   2222    2223333344455556667777899999999999999999


Q ss_pred             HHHHHHHHHhcc-----hhHHH-HHHHHHHHHHHHHHH
Q 038023          182 SIALVAKVITCG-----YCYYV-VSVWKSFCMGTLFVK  213 (256)
Q Consensus       182 ~v~ll~~~l~~~-----~~yy~-~~~y~~~a~~~FllR  213 (256)
                      ++.-+.+.+.+.     +..+. ..+|+..|.+.++-+
T Consensus       161 v~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~  198 (227)
T COG5080         161 VFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKS  198 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988777776542     22222 266777776665543

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.67  E-value=0.93  Score=41.65  Aligned_cols=102  Identities=21%  Similarity=0.345  Sum_probs=69.8

Q ss_pred             CCCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHH
Q 038023          101 INAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVA  180 (256)
Q Consensus       101 inaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~  180 (256)
                      .+.+||=-|+..    +|+-+..+=++||=|=-       ....++++-.+-+.+.+-+|+.+++++....+..||.+.+
T Consensus       114 ~~d~DlaGPlvf----~L~f~~flLl~gKi~Fg-------yIygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLP  182 (249)
T KOG3103|consen  114 MKDTDLAGPLVF----CLLFGLFLLLAGKIHFG-------YIYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLP  182 (249)
T ss_pred             ecCcccccchHH----HHHHHHHHHhcCceEEE-------EEeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHH
Confidence            367999999865    45556666677774322       2234555666666666666667899999999999999999


Q ss_pred             HHHHHHHHHHhc--chhHHH----HHHHHHHHHHHHHHH
Q 038023          181 VSIALVAKVITC--GYCYYV----VSVWKSFCMGTLFVK  213 (256)
Q Consensus       181 i~v~ll~~~l~~--~~~yy~----~~~y~~~a~~~FllR  213 (256)
                      +++.-.++++.+  +..-|+    ..+|++-|.+-++++
T Consensus       183 lvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~  221 (249)
T KOG3103|consen  183 LVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVS  221 (249)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877777654  333332    466777776666555

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.35  E-value=21  Score=32.72  Aligned_cols=74  Identities=19%  Similarity=0.387  Sum_probs=52.1

Q ss_pred             CccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHHHHH
Q 038023          104 PNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSI  183 (256)
Q Consensus       104 PDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~i~v  183 (256)
                      =||..|+-..+-.    ++++-..+.+.-.   ..++..++++.+-.+++.+-.-+++ +++++..-++.+||--.+..+
T Consensus        98 wDlWGPl~~~~~l----a~iL~~s~~~~~~---~vFs~vf~i~wfG~~vvtln~kLLG-gnIs~fQsl~IlGYCLfPl~v  169 (234)
T KOG2946|consen   98 WDLWGPLFFCVFL----ALILSLSGSVKSA---SVFAVVFAILWFGAVVVTLNIKLLG-GNISFFQSLCILGYCLFPLVV  169 (234)
T ss_pred             ccccchhHHHHHH----HHHHHhhcCcccc---hhHHHHHHHHHHHHHHHHHHHHHhC-CceeEEeehhhhhhcccHHHH
Confidence            4899997543333    3333333333322   5677777787777777777777787 789999999999999888777


Q ss_pred             HH
Q 038023          184 AL  185 (256)
Q Consensus       184 ~l  185 (256)
                      +.
T Consensus       170 ~a  171 (234)
T KOG2946|consen  170 AA  171 (234)
T ss_pred             HH
Confidence            74

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00