Citrus Sinensis ID: 038043
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 387 | ||||||
| 198400349 | 417 | unknown protein [Camellia sinensis] | 0.937 | 0.870 | 0.395 | 6e-63 | |
| 224072717 | 420 | predicted protein [Populus trichocarpa] | 0.937 | 0.864 | 0.399 | 5e-61 | |
| 255554202 | 422 | conserved hypothetical protein [Ricinus | 0.958 | 0.879 | 0.402 | 6e-61 | |
| 359482319 | 442 | PREDICTED: UPF0481 protein At3g47200-lik | 0.935 | 0.819 | 0.364 | 6e-52 | |
| 297740074 | 441 | unnamed protein product [Vitis vinifera] | 0.935 | 0.820 | 0.364 | 7e-52 | |
| 296082009 | 425 | unnamed protein product [Vitis vinifera] | 0.925 | 0.842 | 0.368 | 5e-51 | |
| 224115876 | 434 | predicted protein [Populus trichocarpa] | 0.937 | 0.836 | 0.375 | 1e-50 | |
| 147799475 | 439 | hypothetical protein VITISV_031449 [Viti | 0.922 | 0.813 | 0.382 | 1e-50 | |
| 147840479 | 441 | hypothetical protein VITISV_026781 [Viti | 0.945 | 0.829 | 0.360 | 2e-50 | |
| 356559605 | 434 | PREDICTED: UPF0481 protein At3g47200-lik | 0.943 | 0.841 | 0.344 | 4e-50 |
| >gi|198400349|gb|ACH87183.1| unknown protein [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/399 (39%), Positives = 231/399 (57%), Gaps = 36/399 (9%)
Query: 5 FKIRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRGED 64
F I ++ E LR N KAY+P+II+IGP + R + +L M++HK+ Y LLQ +
Sbjct: 28 FFIFRLHEELRQLNDKAYDPEIISIGPYH----RGKQNLQMMERHKLRYFHSLLQEKN-- 81
Query: 65 LSSLGRYLVAMRELEEKARCCYAEPIHMLLLEFVEMLLLDACFIVELFRKFELDIWEDD- 123
S ++ A+ LE A YAEPI + E ++M++LD CFI+EL RKF+++ D+
Sbjct: 82 -LSPEDFVYAIGSLELHACDFYAEPISLDSDEMIKMMVLDGCFIIELLRKFDMEFLRDEN 140
Query: 124 DNVFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKMPEDQETNFQDLILGFFSKVLTV 183
D +F W+ +L RDL+L NQ+P FVL + +D + P + + L L FFS +L
Sbjct: 141 DPIFKRDWIFNRLQRDLMLFENQIPFFVLCKLFDMIEAPGNHKRLIY-LALRFFSDLL-- 197
Query: 184 QLLNVPRIGP---FYEVDTKTKHLLGFICDYHWEWVPRF--VPPPYDE-------NWNFI 231
P G E K HLLG I H W P F V P D NW FI
Sbjct: 198 -----PGTGKREDGKESQGKISHLLGLI---HSNWHPSFAGVEPVEDASNKKGKGNWRFI 249
Query: 232 ISATNLKEAGIKFERIE--GESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFF 289
S L+E+G+K E+ E G SL I+F G+++IP LTI+ ESFFRN+ YEQ+
Sbjct: 250 PSTRELQESGVKIEKFEVTGGSLFDIEFKN--GVMQIPPLTIEGRTESFFRNLIAYEQYS 307
Query: 290 PFDEYAPLINYLKFMDSLINTAKDVELLFENKILHNCLGDDEVVANMFNRLGDSVALPLY 349
P ++++ + +Y+KF+D LI++ KDV++L I+ N LGDDE V+N+FN++ D+V+
Sbjct: 308 PDNQFSYVADYVKFLDFLIDSPKDVKILSRRGIIDNWLGDDEAVSNLFNKISDTVSGTSM 367
Query: 350 NF-YGDIFHNVNEYCDRHWKRWIANLMHNYFNTPLAIIS 387
+F Y DIF+ VN +C + W + A L NYFN P A+I+
Sbjct: 368 HFRYADIFNRVNIHCSQPWNLYRATLNRNYFNNPWAMIA 406
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072717|ref|XP_002303847.1| predicted protein [Populus trichocarpa] gi|222841279|gb|EEE78826.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255554202|ref|XP_002518141.1| conserved hypothetical protein [Ricinus communis] gi|223542737|gb|EEF44274.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359482319|ref|XP_002283339.2| PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740074|emb|CBI30256.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296082009|emb|CBI21014.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224115876|ref|XP_002332079.1| predicted protein [Populus trichocarpa] gi|222831965|gb|EEE70442.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147799475|emb|CAN68458.1| hypothetical protein VITISV_031449 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147840479|emb|CAN75021.1| hypothetical protein VITISV_026781 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356559605|ref|XP_003548089.1| PREDICTED: UPF0481 protein At3g47200-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 387 | ||||||
| TAIR|locus:2044918 | 448 | AT2G36430 "AT2G36430" [Arabido | 0.945 | 0.816 | 0.331 | 3.9e-44 | |
| TAIR|locus:2083078 | 531 | AT3G50120 "AT3G50120" [Arabido | 0.387 | 0.282 | 0.396 | 1.3e-39 | |
| TAIR|locus:2083108 | 539 | AT3G50140 [Arabidopsis thalian | 0.387 | 0.278 | 0.396 | 6.7e-39 | |
| TAIR|locus:2083138 | 503 | AT3G50160 "AT3G50160" [Arabido | 0.935 | 0.719 | 0.317 | 1.6e-38 | |
| TAIR|locus:2074755 | 541 | AT3G50170 "AT3G50170" [Arabido | 0.387 | 0.277 | 0.370 | 1.1e-37 | |
| TAIR|locus:2083093 | 564 | AT3G50130 [Arabidopsis thalian | 0.436 | 0.299 | 0.352 | 1.3e-36 | |
| TAIR|locus:2171127 | 440 | AT5G22540 "AT5G22540" [Arabido | 0.937 | 0.825 | 0.302 | 5.7e-36 | |
| TAIR|locus:2083123 | 509 | AT3G50150 [Arabidopsis thalian | 0.413 | 0.314 | 0.359 | 8.5e-36 | |
| TAIR|locus:2116667 | 680 | AT4G31980 "AT4G31980" [Arabido | 0.387 | 0.220 | 0.341 | 1.9e-32 | |
| TAIR|locus:2148042 | 353 | AT5G11290 "AT5G11290" [Arabido | 0.850 | 0.932 | 0.270 | 6e-32 |
| TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 130/392 (33%), Positives = 193/392 (49%)
Query: 7 IRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRGEDLS 66
I +VP+ + N + YEP++++IGP + R +T L +++HK YL LL R ++L+
Sbjct: 47 IFRVPQSMIDCNGRCYEPRVVSIGPYH----RGQTQLKMIEEHKWRYLNVLLTRT-QNLT 101
Query: 67 SLGRYLVAMRELEEKARCCYAEPIHXXXXXXXXXXXXDACFIVELFRKFE-LDIWEDDDN 125
L Y+ +++ +EE AR CY+E IH D CF++ELFRK L +E +D
Sbjct: 102 -LEDYMKSVKNVEEVARECYSETIHMDSEEFNEMMVLDGCFLLELFRKVNNLVPFEPNDP 160
Query: 126 VFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKMPEDQETN--FQDLILGFFSKVLTV 183
+ +WV RD L NQ+P FVL+ ++ T+ + ETN Q L FF+ ++
Sbjct: 161 LVAMAWVLPFFYRDFLCLENQIPFFVLETLFNLTRGDNENETNASLQSLAFAFFNNMMHR 220
Query: 184 QLLNVPRIGPFYEVDTKTKHLLGFICDYHWEWVPRFVPP---PYDENW--NFIISATNLK 238
++ R F E+ + KHLL + PP P E + I S + L+
Sbjct: 221 TEEDLAR---FKEL--RAKHLLDLLRSSFIPESELHTPPATNPGKEKMPSHIIHSISKLR 275
Query: 239 EAGIKFERI-EGESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYAPL 297
AGIK + + ES L + F G +++P +T+DD + SF N YEQ
Sbjct: 276 RAGIKLRELKDAESFLVVRFRH--GTIEMPAITVDDFMSSFLENCVAYEQCHVACSMH-F 332
Query: 298 INYLKFMDSLINTAKDVELLFENKILHNCLGDDEVVANMFNRLGDSVALPLYNFY-GDIF 356
Y +D L NT KDVE L + I+ N G D +A N LG VA + Y D+F
Sbjct: 333 TTYATLLDCLTNTYKDVEYLCDQNIIENYFGTDTELAKFVNSLGRDVAFDITQCYLKDLF 392
Query: 357 HNVNEYCDRHWK-RWIANLMHNYFNTPLAIIS 387
VNEY W W A YFN+P + +S
Sbjct: 393 EEVNEYYKSSWHVEW-ATFKFTYFNSPWSFVS 423
|
|
| TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083093 AT3G50130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083123 AT3G50150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2148042 AT5G11290 "AT5G11290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 387 | |||
| pfam03140 | 387 | pfam03140, DUF247, Plant protein of unknown functi | 1e-104 |
| >gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = e-104
Identities = 151/393 (38%), Positives = 206/393 (52%), Gaps = 29/393 (7%)
Query: 7 IRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRGEDLS 66
I +VP LR N +AYEP++++IGP +H + HL M++HK YL + L R G LS
Sbjct: 1 IYRVPARLRDVNPEAYEPRVVSIGPYHH----GKPHLRAMEEHKWRYLNRFLDRTGRGLS 56
Query: 67 SLGRYLVAMRELEEKARCCYAEPIHMLLL-EFVEMLLLDACFIVELFRKFELDIWEDDDN 125
L L A+RELEE+AR CYAE + + EFVEMLLLD CFI+ELF + I+ ++D
Sbjct: 57 -LEDLLAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRLSEGIYGENDP 115
Query: 126 VFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKMPEDQETNFQDLILGFFSKVLTVQL 185
+F W+ + RDLLL NQ+P FVL++ ++ +D +T+ DL L FF +
Sbjct: 116 LFARRWLLSLIRRDLLLLENQIPFFVLEKLFELLTGRQDVKTSLNDLALRFFYDCES--- 172
Query: 186 LNVPRIGPFYEVDTKTKHLLGFICDYHWEWVPRFVPPPYD---------ENWNFIISATN 236
++ HLL +P P P I SAT
Sbjct: 173 ---LLPPDDLIEESNVHHLLDL---LRRSLLPSTSPDPTPAAPPRDNGAATPRLIPSATE 226
Query: 237 LKEAGIKF-ERIEGESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYA 295
L+EAG++F R +L + F G+L+IP L +DD ES RN+ +EQ
Sbjct: 227 LREAGVRFKRRKTASCILDVSFKR--GVLEIPRLAVDDGTESLLRNLIAFEQCHGGSGN- 283
Query: 296 PLINYLKFMDSLINTAKDVELLFENKILHNCLGDDEVVANMFNRLGDSVAL-PLYNFYGD 354
+ +Y+ FMD+LINTA+DV LL IL N LG DE VA FNRL V ++
Sbjct: 284 HVTSYVAFMDNLINTAEDVALLRRKGILENLLGSDEEVAKFFNRLCRGVVFDVDDSYLSG 343
Query: 355 IFHNVNEYCDRHWKRWIANLMHNYFNTPLAIIS 387
+F +VN YC W RW A L YF+ P A IS
Sbjct: 344 VFEDVNRYCRSRWNRWKATLRRKYFSNPWAAIS 376
|
The function of the plant proteins constituting this family is unknown. Length = 387 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 387 | |||
| PF03140 | 391 | DUF247: Plant protein of unknown function; InterPr | 100.0 |
| >PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-107 Score=818.12 Aligned_cols=364 Identities=41% Similarity=0.691 Sum_probs=326.0
Q ss_pred EeecCchhhhcCCCCCcceeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHHHHHHH
Q 038043 7 IRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRG---EDLSSLGRYLVAMRELEEKAR 83 (387)
Q Consensus 7 I~rVP~~lr~~n~~~Y~P~~VsIGPyHhg~~~~~~~L~~mE~~K~~~~~~~l~r~~---~~~~~l~~~~~~i~~~e~~~R 83 (387)
|||||+++|++|+++|+|++||||||||| +++|+.||++|++|++.|++|++ .++++ ++++|.+++++||
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g----~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~---~~~~i~~~e~~~R 73 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHG----KPDLQEMEEHKLRYLHRFLKRSGAPAESLED---YVEAIRSLEEEAR 73 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCC----chhhhhhHHHHHHHHHHHHHHhCCCcccHHH---HHHHHHHHHHHHH
Confidence 89999999999999999999999999999 99999999999999999999998 68888 9999999999999
Q ss_pred hcccCCcC-CCHHHHHHHHHHHHHHHHHHHHhhccccccCCCc-ccchhhhhhhhhhhhhhhcccccHHHHHHHHhccCC
Q 038043 84 CCYAEPIH-MLLLEFVEMLLLDACFIVELFRKFELDIWEDDDN-VFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKM 161 (387)
Q Consensus 84 ~cY~~~~~-~~~~ef~~MmllDgCFlLe~~~~~~~~~~~~~d~-~~~~~~~~~~i~~Dl~LLENQiPffVLe~L~~~~~~ 161 (387)
+||++++. +++++|++||++|||||||+|+.+.. ..+.+|| ++..+|.+..|.+||+|||||||||||++||++...
T Consensus 74 ~~Y~~~~~~~~~~~f~~MmllDgCFlLe~~~~~~~-~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~ 152 (391)
T PF03140_consen 74 ACYAEDIDDMSSDEFVEMMLLDGCFLLEFFLRYSR-SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFG 152 (391)
T ss_pred HHhcccccccCHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcc
Confidence 99999987 99999999999999999999999874 2345688 888999999999999999999999999999999884
Q ss_pred C-CcccchHHHHHHHhccccccccccCCCCCCCCcCCCCcCCChHHHHHhhhcCCCC--CCCCCCC------CCCccccc
Q 038043 162 P-EDQETNFQDLILGFFSKVLTVQLLNVPRIGPFYEVDTKTKHLLGFICDYHWEWVP--RFVPPPY------DENWNFII 232 (387)
Q Consensus 162 ~-~~~~~~l~~l~~~ff~~~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~~~~~--~~~~~~~------~~~~~~~~ 232 (387)
+ .....++.+++.+||....... . .. ......+++|||||+|.+++|+.+ .+.+... ..++..+|
T Consensus 153 ~~~~~~~~l~~l~~~~~~~~~~~~---~-~~--~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (391)
T PF03140_consen 153 SKSDVDESLIDLVLKFFYKHWPSW---P-PD--EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIR 226 (391)
T ss_pred cccCccchHHHHHHhHhccccccc---c-cc--ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCC
Confidence 3 4567889999999994322211 1 11 125667899999999999999432 1111110 12467999
Q ss_pred CHHHHHHcCcEEEecCCC-CceeeEEecCCceEEeceEEeccchhHHHHhHHHHHHhCCCCCCccceeHHHHHHhhcCCh
Q 038043 233 SATNLKEAGIKFERIEGE-SLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYAPLINYLKFMDSLINTA 311 (387)
Q Consensus 233 sAteL~~aGVkfk~~~~~-~llDI~F~~~~G~L~iP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fm~~LI~t~ 311 (387)
|||||++|||+|+++++. +++||+|+ +|+|+||+|.||++|+++||||||||||+. ..+.+||||+.||++||+|+
T Consensus 227 sA~eL~~aGV~fk~~~~~~~~lDv~F~--~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~-~~~~~vtsY~~fm~~Li~t~ 303 (391)
T PF03140_consen 227 SATELREAGVKFKPSETDRSLLDVKFK--KGVLEIPPLYIDDNTESLLRNLIAFEQCHP-PTGSYVTSYVFFMDSLINTP 303 (391)
T ss_pred CHHHHHhCCcEEeeccCccccccceec--CCEEEeCeEEECCcchHHHhHHHHHHHHhc-cCCchHhHHHHHHHHHhCcH
Confidence 999999999999999876 59999998 999999999999999999999999999999 88999999999999999999
Q ss_pred hhHHHHHhCCccccCCCChHHHHHHHHHhcccCCCCCCc-hHHHHHHHHHHHccCcHHHHHHhhccccccccccccC
Q 038043 312 KDVELLFENKILHNCLGDDEVVANMFNRLGDSVALPLYN-FYGDIFHNVNEYCDRHWKRWIANLMHNYFNTPLAIIS 387 (387)
Q Consensus 312 eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~~~~~~~~-~~~~v~~~l~~y~~~r~~~w~a~l~~~yf~nPW~~is 387 (387)
+||++|+++|||+|++|+||+|++|||+||++++.++++ ||.+++++||+||++||++|+|+++|+||+|||+++|
T Consensus 304 ~DV~lL~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is 380 (391)
T PF03140_consen 304 EDVELLRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFIS 380 (391)
T ss_pred hhHHHHHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHH
Confidence 999999999999999999999999999999999987654 9999999999999999999999999999999999886
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 387 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 57/420 (13%), Positives = 115/420 (27%), Gaps = 160/420 (38%)
Query: 54 LKKLLQRRGEDLSSLGRYLVAMRELEEKARCCYAEPIHMLLLE--FVEMLL-LDACFIVE 110
L+KLL + + +S + ++ + + LL + LL L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLL------ 251
Query: 111 LFRKFELDIWEDDD-NVF-------MTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKMP 162
++ N F +T+ R + + F+ +
Sbjct: 252 -------NVQNAKAWNAFNLSCKILLTT-------RFKQVTD-----FLSAATTTHISLD 292
Query: 163 EDQETNFQDLILGFFSKVLTVQLLNVPR----IGPFYEVDTKTKHLLGFICDYHWEWVPR 218
T D + K L + ++PR P L I + + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---------RLSIIAESIRDGLAT 343
Query: 219 FVPPPYDENW--------NFIISAT--NLKEAGIK--FERIEGESLLSIDFDEDAGILKI 266
+ +NW II ++ L+ A + F+R LS+ F A I
Sbjct: 344 W------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LSV-FPPSA---HI 387
Query: 267 P--TLTI---------DDDIESFFRN------------ISVYEQFF-------------- 289
P L++ + + IS+ +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 290 --------------------PFDEYAPLINYLKF-MDSLINTAKDVEL--LF------EN 320
D+Y +++ + ++ + + +F E
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 321 KILHNCLGDDEVVANMFNRLGDSVALPLYNFYGDIFHNVNEYCDRHWKRWIANLMHNYFN 380
KI H+ + ++ N L L Y Y I N D ++R + ++
Sbjct: 506 KIRHDSTAWN-ASGSILNTLQQ---LKFYKPY--ICDN-----DPKYERLVNAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00