Citrus Sinensis ID: 038048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
MWPHVDKNFSTPPPTWRKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQPRRSSSREHNMEDQRVARCREKPVGSSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALPSPNCEDWTRRSWKDNDQVKDEPVKQPLRTAADRDLKKNEYLWK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEHEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEcccccEEEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccccccEcHHHHcccccHHHHccccccEEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHHccccccHccccEEccccccccccccccccccEEEEccccccccccccHHHHHcccEEEEccccccccccccccHcHHHHHccccccccccEcccccccccHcccccccccccccEEccccHHHHHcccccccccccccccccccccccccccEcccccccccccHccHHHHHcHHHcc
Coil and Loop (DISEMBL)
mwphvdknfstppptwrkqrslpsplserkristpennkkgdifhvihkvpsgdspyvrakhiqlidkdpsRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISagnrqmdtsySRSFERAIQMLTelespsvlkltelevgddqknqrpfalpadgntnpqvtcstsggqnhhlstFSVCRslanghdeeilnEQDRIAysrnhhenkhsflgydkgslklmssgpraasqfslplfvdngrrgsyignphgksglastmkkncgsspgigvssahqeahvspaavRRNLEvlftqprrpfrefsdgeqgkdrwgpigssninqssektLHTYSTVlftqprrsssrehnmeDQRVArcrekpvgssirkltfeqaiptendqaqaipcvkrklvvptkdeskiglpnsknalpspncedwtrrswkdndqvkdepvkqplrtaadrdlkkneylwk
Flexible Loop (DISEMBL)
mwphvdknfstppptwrkqrslpsplserkristpennkkgdifHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISagnrqmdtsysRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNlevlftqprrpfrefsdgeqgkdrwgpigssninqssektlHTYSTVlftqprrsssrehnmedqrvarcrekpvgssirkltfeqaiptendqaqaipcvKRKLVVptkdeskiglpnsknalpspncedwtrrswkdndqvkdepvkqplrtaadrdlkkneylwk
Low Complexity Region (SEG)
MWPHVDKNFSTPPPTWRKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQPRRSSSREHNMEDQRVARCREKPVGSSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALPSPNCEDWTRRSWKDNDQVKDEPVKQPLRTAADRDLKKNEYLWK
Disordered region (IsUnstruct)
*****************************************DIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMK*******************IELLQNKLKNIEEGIAFAGVKTKMA****KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS************************************************************************TFSVCRSLA**************************************************PLFV*****************************************************VL*********************************************************************************************IPCVKRKLV**************************************************************
Disordered Region (DISOPRED)
************************************************KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAG**Q***SYSRSFERAIQMLTEL**************************************************************************************************************************************************************VRRNLEVLFTQ*****************WGPIGSS***********TYSTVLFTQ*******************************TF*QAI***********************************************************VKQPLRTAADRDLKKN*YLW*
Disordered Region (DISEMBL)
*****************************KRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK***********QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKK*******************SPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQ***************VARCREKPVGSSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALPSPNCEDWTRRSWKDNDQVKDEPVKQPLRTAADRDLKKNEYLWK
Disordered Region (DISPRO)
*******N*ST*****************************GDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS******DTSYSRSFERAIQMLTELESPSVLKLTELEVGDD**NQRPFALPADGNTNPQVTCSTS******L*TFSVCRS***GHDEEILNEQDRIAYSRNHHENKHSFLGYDKGS***************************************************IGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQ***************************IRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKN*L**************DNDQVKDEPVKQPLRTAADRDLKKNEYLWK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWPHVDKNFSTPPPTWRKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARxxxxxxxxxxxxxxxxxxxxxIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQPRRSSSREHNMEDQRVARCREKPVGSSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALPSPNCEDWTRRSWKDNDQVKDEPVKQPLRTAADRDLKKNEYLWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
118487530	690	unknown [Populus trichocarpa]	0.740	0.617	0.519	1e-114
359483722	941	PREDICTED: uncharacterized protein LOC10	0.864	0.528	0.420	1e-105
297740866	673	unnamed protein product [Vitis vinifera]	0.735	0.628	0.478	1e-104
224061607	281	predicted protein [Populus trichocarpa]	0.424	0.868	0.676	7e-98
449435896	683	PREDICTED: uncharacterized protein LOC10	0.433	0.364	0.616	8e-90
449488574	297	PREDICTED: uncharacterized protein LOC10	0.422	0.818	0.622	2e-89
224122150	232	predicted protein [Populus trichocarpa]	0.36	0.892	0.702	3e-87
356532429	657	PREDICTED: uncharacterized protein LOC10	0.415	0.363	0.602	2e-85
356558069	595	PREDICTED: uncharacterized protein LOC10	0.415	0.401	0.599	1e-84
357448553	617	hypothetical protein MTR_2g030510 [Medic	0.513	0.478	0.519	4e-83

>gi|118487530|gb|ABK95592.1| unknown [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/485 (51%), Positives = 306/485 (63%), Gaps = 59/485 (12%)

Query: 7   KNFSTPPPTWRKQRS---LPSPLSERK-RISTPENNKKGDIFHVIHKVPSGDSPYVRAKH 62
           + F TPP +WR Q+S   +  P+SERK R+S P  N K D+FHV+HKVP+GDSPYVRAKH
Sbjct: 14  RGFWTPPASWRSQQSPEVVMMPMSERKERVSHP--NCKRDLFHVVHKVPAGDSPYVRAKH 71

Query: 63  IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA------------ 110
           +QLI+KDPS+AVSLFWAAINAGDRVDSALKDMAVVMKQLDR+DEAIEA            
Sbjct: 72  VQLIEKDPSKAVSLFWAAINAGDRVDSALKDMAVVMKQLDRADEAIEAIKSFRHLCPCDS 131

Query: 111 -------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE 157
                        RSGRIEEEIE+LQ KLK IEEGIAF+G KTK ARS G+KIQITVEQE
Sbjct: 132 QESIDNVLVELYKRSGRIEEEIEMLQCKLKLIEEGIAFSGKKTKTARSHGRKIQITVEQE 191

Query: 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217
           +SRILGNLAWAY+Q +++ +AEQ+YRKALSL  D NKQCNLAICLMHMNR+ EAKSLLQ 
Sbjct: 192 RSRILGNLAWAYLQHHDYGLAEQHYRKALSLEPDQNKQCNLAICLMHMNRIPEAKSLLQT 251

Query: 218 VKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFALPADGNTN 277
           VK  +G++ MD SY++SFERA Q+L E ES S    TE     ++ +QR   LP   N  
Sbjct: 252 VKALSGSKPMDDSYAKSFERACQILAEFESHSRDNPTE----QNEDHQRSLTLPTTRNLK 307

Query: 278 PQVTCSTSGGQNHHLSTFSVCRSLANGHDEE--ILNEQDRIAYSRNHHENKHSFLGYDKG 335
            QV  S +G  +  +S F        G +EE  + +EQ+R  Y +N  EN+ +   Y+ G
Sbjct: 308 -QVAGSPNG--DPFVSGFIDSIKCTGGFNEERMLADEQNRRYYWQNRSENEKNLFVYNNG 364

Query: 336 SLKLMS---SGPRAASQFSLPLFVDNG-RRGSYIGNPHGKSGLASTMKKNCGSSPGIGVS 391
           S   +S   SGP    Q SL    DN  RRGSY  +P  + G  S MK+N  S    G +
Sbjct: 365 SSHCISSELSGP----QSSLQTAADNSRRRGSYFESPVERLGFVSKMKENRFSFTETGPA 420

Query: 392 SAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKTLHTY 451
           S  ++   SPA        LFTQPRR    F  G+Q K RW   G   +    E  +   
Sbjct: 421 STQKKTFTSPA--------LFTQPRRCSLGFDKGDQIKIRW---GEDTVETKKENAIRNL 469

Query: 452 STVLF 456
           S VL 
Sbjct: 470 SEVLL 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483722|ref|XP_002266141.2| PREDICTED: uncharacterized protein LOC100242406 [Vitis vinifera]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/592 (42%), Positives = 334/592 (56%), Gaps = 95/592 (16%)

Query: 1   MWPHVD----KNFSTPPPTWRKQRSLPS--PLSERKRISTPENNKKGDIFHVIHKVPSGD 54
           MW H +    K FSTPPPTW+ + S  S  P+SE+ R        K D+FHV+HKVP+GD
Sbjct: 1   MWSHNNNFPAKGFSTPPPTWKSKASFSSATPVSEKTRSMA----NKDDLFHVVHKVPAGD 56

Query: 55  SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA---- 110
           SPYVRAK +QLIDKDP+RA+SLFWAAIN+GDRVDSALKDMAVVMKQL+RSDEAIEA    
Sbjct: 57  SPYVRAKQVQLIDKDPNRAISLFWAAINSGDRVDSALKDMAVVMKQLNRSDEAIEAIKSF 116

Query: 111 ---------------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKK 149
                                RSGR++E+IE+LQ KLKNI+EG AF G +TK+ARSQGKK
Sbjct: 117 RHLCPQESQESLDNVLVELYKRSGRLDEQIEMLQYKLKNIDEGSAFGGKRTKIARSQGKK 176

Query: 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVT 209
           IQI++EQEKSR+LGNLAWAY+QQ N++ A + Y++AL+L  D NK+CNLAICLM+MN++ 
Sbjct: 177 IQISIEQEKSRLLGNLAWAYLQQGNYKTAGELYKQALALDPDRNKECNLAICLMYMNKIK 236

Query: 210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFA 269
           EAK++L A+++S+ N +MD SY +SFERA Q+LTELE+ SV+   E E  ++ +      
Sbjct: 237 EAKAMLYAIQVSSQNGRMDDSYVKSFERASQVLTELEANSVIDPNEQEGHEEMRRH---- 292

Query: 270 LPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEE--ILNEQDRIAYSRNHHENKH 327
           L +  + N     S    +N HLS     R  A    EE  +L++ +R +Y +N  ENK 
Sbjct: 293 LRSLVSRNSIEVNSCINEENDHLSGLVASRRRAGRQQEETMLLDKPNRRSYCQNQFENKD 352

Query: 328 SFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPG 387
           +F   D+ S K MS G  +A Q    L+ D  ++G+ + NP  +S  +S  K N  S+  
Sbjct: 353 NFSQPDEESSKCMSLGLSSA-QSPQNLYADKWKKGAQLENPFERSDFSSRRKGNWVSATD 411

Query: 388 IGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNINQSSEKT 447
             V S  +  + SP  VR N ++  T+ RR     S  +Q K  WG              
Sbjct: 412 -KVGSVQRRTYGSPLPVRGNSKLPSTEQRRGPCLLSKADQRKSTWG-------------- 456

Query: 448 LHTYSTVLFTQPRRSSSREHNMEDQRVARCREKPVGSSIRKLTFEQAIPTENDQAQAIPC 507
                                          E    S  RKL+FE  I  E   A A   
Sbjct: 457 -------------------------------ENTADSPGRKLSFEDPIAKEAG-AMAPQN 484

Query: 508 VKRKLVVPTKDESKIGLPNSKNALPSPNCEDWTRRSWKDNDQVKDEPVKQPL 559
              +L   + ++ KI L  S+ +LPSP        SW    +V+ E V +P+
Sbjct: 485 PDGRLQASSNEKLKIALQTSEKSLPSPGG------SWGGITRVESEVVTEPI 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740866|emb|CBI31048.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/466 (47%), Positives = 297/466 (63%), Gaps = 43/466 (9%)

Query: 1   MWPHVD----KNFSTPPPTWRKQRSLPS--PLSERKRISTPENNKKGDIFHVIHKVPSGD 54
           MW H +    K FSTPPPTW+ + S  S  P+SE+ R        K D+FHV+HKVP+GD
Sbjct: 1   MWSHNNNFPAKGFSTPPPTWKSKASFSSATPVSEKTRSMA----NKDDLFHVVHKVPAGD 56

Query: 55  SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA---- 110
           SPYVRAK +QLIDKDP+RA+SLFWAAIN+GDRVDSALKDMAVVMKQL+RSDEAIEA    
Sbjct: 57  SPYVRAKQVQLIDKDPNRAISLFWAAINSGDRVDSALKDMAVVMKQLNRSDEAIEAIKSF 116

Query: 111 ---------------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKK 149
                                RSGR++E+IE+LQ KLKNI+EG AF G +TK+ARSQGKK
Sbjct: 117 RHLCPQESQESLDNVLVELYKRSGRLDEQIEMLQYKLKNIDEGSAFGGKRTKIARSQGKK 176

Query: 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVT 209
           IQI++EQEKSR+LGNLAWAY+QQ N++ A + Y++AL+L  D NK+CNLAICLM+MN++ 
Sbjct: 177 IQISIEQEKSRLLGNLAWAYLQQGNYKTAGELYKQALALDPDRNKECNLAICLMYMNKIK 236

Query: 210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRPFA 269
           EAK++L A+++S+ N +MD SY +SFERA Q+LTELE+ SV+   E E  ++ +      
Sbjct: 237 EAKAMLYAIQVSSQNGRMDDSYVKSFERASQVLTELEANSVIDPNEQEGHEEMRRH---- 292

Query: 270 LPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEE--ILNEQDRIAYSRNHHENKH 327
           L +  + N     S    +N HLS     R  A    EE  +L++ +R +Y +N  ENK 
Sbjct: 293 LRSLVSRNSIEVNSCINEENDHLSGLVASRRRAGRQQEETMLLDKPNRRSYCQNQFENKD 352

Query: 328 SFLGYDKGSLKLMSSGPRAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPG 387
           +F   D+ S K MS G  +A Q    L+ D  ++G+ + NP  +S  +S  K N  S+  
Sbjct: 353 NFSQPDEESSKCMSLGLSSA-QSPQNLYADKWKKGAQLENPFERSDFSSRRKGNWVSATD 411

Query: 388 IGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWG 433
             V S  +  + SP  VR N ++  T+ RR     S  +Q K  WG
Sbjct: 412 -KVGSVQRRTYGSPLPVRGNSKLPSTEQRRGPCLLSKADQRKSTWG 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061607|ref|XP_002300564.1| predicted protein [Populus trichocarpa] gi|222847822|gb|EEE85369.1| predicted protein [Populus trichocarpa]

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/284 (67%), Positives = 221/284 (77%), Gaps = 40/284 (14%)

Query: 1   MWPHV--DKN-----FSTPPPTWRKQRSLPS----PLSERK-RISTPENNKKGDIFHVIH 48
           MW H   DKN     F TPP +WR Q S P+    P+SERK R+S+P  + K DIFHVIH
Sbjct: 1   MWSHNNNDKNSPARGFWTPPASWRSQHS-PAVAMMPMSERKERVSSP--SCKRDIFHVIH 57

Query: 49  KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAI 108
           KVP+GDSPYVRAKH+QLI+KDPS+AVSLFWAAIN+GDRVDSALKDMAVVMKQLDR+DEAI
Sbjct: 58  KVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINSGDRVDSALKDMAVVMKQLDRADEAI 117

Query: 109 EA-------------------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143
           EA                         RSGRIEEEIE+LQ KLKNIEEGIAF+G KTK A
Sbjct: 118 EAIKSFRHLCPYDSQESIDNVLVELYKRSGRIEEEIEMLQRKLKNIEEGIAFSGKKTKTA 177

Query: 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM 203
           RSQG+KIQITVEQE+SRILGNLAWAY+Q +++ +AEQYYRK LS+  D NKQCNLAICLM
Sbjct: 178 RSQGRKIQITVEQERSRILGNLAWAYLQHHDYGLAEQYYRKGLSMEPDQNKQCNLAICLM 237

Query: 204 HMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELES 247
           HMNR+ EAKSLLQ VK S+G++ MD SY++SFERA Q+LTELES
Sbjct: 238 HMNRIPEAKSLLQTVKASSGSKPMDDSYAKSFERACQILTELES 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435896|ref|XP_004135730.1| PREDICTED: uncharacterized protein LOC101215262 [Cucumis sativus]

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 175/284 (61%), Positives = 206/284 (72%), Gaps = 35/284 (12%)

Query: 1   MWPHVDKN------FSTPPPTWRK---QRSLPSPLSERKRISTPENNKKGDIFHVIHKVP 51
           MW +  KN      F TPPP+W+    +    +P SERKR S+P    K D+FHVIHKVP
Sbjct: 1   MWTNNSKNNFPCKGFLTPPPSWKSGPFRSPKTAPFSERKR-SSPNFANKSDLFHVIHKVP 59

Query: 52  SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA- 110
           +GDSPYV+AK +QLI+KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 
Sbjct: 60  AGDSPYVKAKQVQLIEKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAI 119

Query: 111 ------------------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146
                                   RSGRIEEEI++LQ KLK IE+G  F G +TK ARSQ
Sbjct: 120 KSFRHLCPYDSQESIDNVLIELYKRSGRIEEEIDMLQRKLKQIEDGTIFGGKRTKAARSQ 179

Query: 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMN 206
           GKK+QIT+EQEKSR+LGNLAWA++Q NN  +AE YYRKALSL  D NK+CNLAIC +  N
Sbjct: 180 GKKVQITIEQEKSRVLGNLAWAFLQLNNIYVAEDYYRKALSLEADNNKKCNLAICQILTN 239

Query: 207 RVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSV 250
           R+TEAKSLLQ+V+ S+G +  + SY++SFERA  MLTE ES S 
Sbjct: 240 RLTEAKSLLQSVRASSGGKPTEESYAKSFERAFHMLTEKESKSF 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488574|ref|XP_004158093.1| PREDICTED: uncharacterized protein LOC101226286 [Cucumis sativus]

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/278 (62%), Positives = 204/278 (73%), Gaps = 35/278 (12%)

Query: 1   MWPHVDKN------FSTPPPTWRK---QRSLPSPLSERKRISTPENNKKGDIFHVIHKVP 51
           MW +  KN      F TPPP+W+    +    +P SERKR S+P    K D+FHVIHKVP
Sbjct: 1   MWTNNSKNNFPCKGFLTPPPSWKSGPFRSPKTAPFSERKR-SSPNFANKSDLFHVIHKVP 59

Query: 52  SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA- 110
           +GDSPYV+AK +QLI+KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 
Sbjct: 60  AGDSPYVKAKQVQLIEKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAI 119

Query: 111 ------------------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146
                                   RSGRIEEEI++LQ KLK IE+G  F G +TK ARSQ
Sbjct: 120 KSFRHLCPYDSQESIDNVLIELYKRSGRIEEEIDMLQRKLKQIEDGTIFGGKRTKAARSQ 179

Query: 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMN 206
           GKK+QIT+EQEKSR+LGNLAWA++Q NN  +AE YYRKALSL  D NK+CNLAIC +  N
Sbjct: 180 GKKVQITIEQEKSRVLGNLAWAFLQLNNIYVAEDYYRKALSLEADNNKKCNLAICQILTN 239

Query: 207 RVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE 244
           R+TEAKSLLQ+V+ S+G + M+ SY++SFERA  MLTE
Sbjct: 240 RLTEAKSLLQSVRASSGGKPMEESYAKSFERAFHMLTE 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122150|ref|XP_002330553.1| predicted protein [Populus trichocarpa] gi|222872111|gb|EEF09242.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 187/232 (80%), Gaps = 25/232 (10%)

Query: 40  KGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMK 99
           K D+FHV+HKVP+GDSPYVRAKH+QLI+KDPS+AVSLFWAAINAGDRVDSALKDMAVVMK
Sbjct: 1   KRDLFHVVHKVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINAGDRVDSALKDMAVVMK 60

Query: 100 QLDRSDEAIEA-------------------------RSGRIEEEIELLQNKLKNIEEGIA 134
           QLDR+DEAIEA                         RSGRIEEEIE+LQ KLK IEEGIA
Sbjct: 61  QLDRADEAIEAIKSFRHLCPCDSQESIDNVLVELYKRSGRIEEEIEMLQCKLKLIEEGIA 120

Query: 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194
           F+G KTK ARS G+KIQITVEQE+SRILGNLAWAY+Q +++ +AEQ+YRKALSL  D NK
Sbjct: 121 FSGKKTKTARSHGRKIQITVEQERSRILGNLAWAYLQHHDYGLAEQHYRKALSLEPDQNK 180

Query: 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELE 246
           QCNLAICLMHMNR+ EAKSLLQ VK  +G++ MD SY++SFERA Q+L E E
Sbjct: 181 QCNLAICLMHMNRIPEAKSLLQTVKALSGSKPMDDSYAKSFERACQILAEFE 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532429|ref|XP_003534775.1| PREDICTED: uncharacterized protein LOC100792980 [Glycine max]

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/272 (60%), Positives = 200/272 (73%), Gaps = 33/272 (12%)

Query: 9   FSTPPPT----WR--KQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKH 62
           + TPPP     W+    RS   P SERK   +P +  K DIFH+IHKVP+GDSPYV+AK 
Sbjct: 68  YMTPPPQRTSPWKPPHSRSSSVPFSERKM--SPNSVNKSDIFHIIHKVPAGDSPYVKAKQ 125

Query: 63  IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA------------ 110
           +QL+DKDP RAVSLFWAAINAGDRV+SALKDMA+VMKQL+RSDEAIEA            
Sbjct: 126 VQLVDKDPGRAVSLFWAAINAGDRVESALKDMALVMKQLNRSDEAIEAIRSFRHLCPSDS 185

Query: 111 -------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE 157
                        RSGR++EEI +L +KLK IE+G+ F G  TK ARSQGKKIQIT EQE
Sbjct: 186 QDSLDNILVELYKRSGRVDEEIAMLCHKLKQIEDGLTFVGRTTKQARSQGKKIQITAEQE 245

Query: 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217
            SRILGNLAWAY+Q+ +++ AE++YRKALS  VD NKQCNLAICL+HMN++ EAK LLQA
Sbjct: 246 ISRILGNLAWAYLQKGDYKTAEEHYRKALSFEVDRNKQCNLAICLIHMNKIKEAKFLLQA 305

Query: 218 VKISAGNRQMDTSYSRSFERAIQMLTELESPS 249
           V+ +  NR+MD S+++SFERA QML E+E+ S
Sbjct: 306 VRTATKNRKMDDSFAKSFERASQMLIEIETSS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558069|ref|XP_003547331.1| PREDICTED: uncharacterized protein LOC100794684 [Glycine max]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/272 (59%), Positives = 202/272 (74%), Gaps = 33/272 (12%)

Query: 9   FSTPPP----TWRKQRSL-PS-PLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKH 62
           + TPPP    +W+   S  PS P SERK+  +P +  K D+FH+IHKVP+GDSPYV+AK 
Sbjct: 5   YMTPPPQPPSSWKPPHSQSPSVPFSERKK--SPNSANKIDLFHIIHKVPAGDSPYVKAKQ 62

Query: 63  IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA------------ 110
           +QL+DKDP RA+SLFWAAINA DRV+SALKDMA+VMKQL+RSDEAIEA            
Sbjct: 63  VQLVDKDPGRAISLFWAAINARDRVESALKDMALVMKQLNRSDEAIEAIRSFRHLCPSDS 122

Query: 111 -------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE 157
                        RSGRI+EEI +L +KLK IE+G+ F G  TK ARSQGKKIQIT EQE
Sbjct: 123 RDSLDNILVELYKRSGRIDEEIAMLHHKLKQIEDGLTFVGRTTKQARSQGKKIQITAEQE 182

Query: 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217
            SRILGNLAWAY+Q+ +++ AE++YRKALS  VD NKQCNLAICL+HMN++ EAK LLQA
Sbjct: 183 ISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQCNLAICLIHMNKIKEAKFLLQA 242

Query: 218 VKISAGNRQMDTSYSRSFERAIQMLTELESPS 249
           V+ +  NR+MD S+++SFERA QML E+E+ S
Sbjct: 243 VRTATKNRKMDDSFAKSFERASQMLIEIETSS 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448553|ref|XP_003594552.1| hypothetical protein MTR_2g030510 [Medicago truncatula] gi|355483600|gb|AES64803.1| hypothetical protein MTR_2g030510 [Medicago truncatula]

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/331 (51%), Positives = 216/331 (65%), Gaps = 36/331 (10%)

Query: 17  RKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSL 76
           R  RS   P SERK+ S   +  K D+FHVIHKVPSGDSPYV+AK +QL+DKDP +A+SL
Sbjct: 25  RPVRSPTVPFSERKK-SPAASVSKDDLFHVIHKVPSGDSPYVKAKQVQLVDKDPGKAISL 83

Query: 77  FWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA-------------------------R 111
           FWAAINAGDRV+SALKDMA+VMKQL+RSDEAIEA                         R
Sbjct: 84  FWAAINAGDRVESALKDMALVMKQLNRSDEAIEAIKSFRHLCPSDSQESLDNILVELYKR 143

Query: 112 SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171
           SGR++EEI +L  KLK IE+G+ + G  TK ARSQGKKIQI+ EQE SRILGNLAWAY+Q
Sbjct: 144 SGRVDEEIGMLHQKLKQIEDGMTYVGRTTKHARSQGKKIQISAEQEISRILGNLAWAYLQ 203

Query: 172 QNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY 231
           + +++ AE++YRKALS  VD NKQCNLAICLM MN+VTEA+ LLQAV  +  NR+MD S+
Sbjct: 204 KGDYKTAEEHYRKALSFEVDRNKQCNLAICLMQMNKVTEARFLLQAVTAATKNRKMDDSF 263

Query: 232 SRSFERAIQMLTELES--PSV--------LKLTELEVGDDQKNQRPFALPADGNTNPQVT 281
            +S+ERA QML E+ES  PSV         K  E E    +    P++ P   ++N + T
Sbjct: 264 VKSYERATQMLQEMESTAPSVDSVKDKGDNKFNETERFSGRNMSSPYSTPNLESSNGKTT 323

Query: 282 CSTSGGQNHHLSTFSVCRSLANGHDEEILNE 312
            +      ++ S  S  +   + H    L E
Sbjct: 324 GTVKSRTENNRSLTSDAKDSHHSHARRRLYE 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
TAIR|locus:2133099	450	MS5 "MALE-STERILE 5" [Arabidop	0.177	0.226	0.663	1.5e-65
TAIR|locus:2156574	306	ATSDI1 "SULPHUR DEFICIENCY-IND	0.253	0.477	0.466	4.8e-56
TAIR|locus:2158750	469	AT5G44330 [Arabidopsis thalian	0.241	0.296	0.524	2.6e-35
TAIR|locus:2080858	430	AT3G51280 "AT3G51280" [Arabido	0.401	0.537	0.395	4.5e-34
TAIR|locus:2010612	303	AT1G04770 "AT1G04770" [Arabido	0.398	0.755	0.359	2.7e-25
TAIR|locus:4515103601	237	AT5G22794 "AT5G22794" [Arabido	0.090	0.219	0.5	9.8e-05

TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.5e-65, Sum P(3) = 1.5e-65
 Identities = 69/104 (66%), Positives = 81/104 (77%)

Query:     9 FSTPPPTWRKQRSLPSPLSERKR--ISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLI 66
             + TPPP          P++ER+R   S   ++++ D FH++HKVPSGDSPYVRAKH QLI
Sbjct:    14 YYTPPPARTSDHVAAMPMTERRRPPYSCSSSSERRDPFHIVHKVPSGDSPYVRAKHAQLI 73

Query:    67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110
             DKDP+RA+SLFW AINAGDRVDSALKDMAVVMKQL RSDE IEA
Sbjct:    74 DKDPNRAISLFWTAINAGDRVDSALKDMAVVMKQLGRSDEGIEA 117

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009556 "microsporogenesis" evidence=IMP

TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 70/150 (46%), Positives = 97/150 (64%)

Query:   111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM 170
             + GR+EE++ELL+ KL+ I +G AF G  TK ARS GKK Q+TV+QE SR+LGNL WAYM
Sbjct:   119 KCGRMEEQVELLKRKLRQIYQGEAFNGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYM 178

Query:   171 QQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTS 230
             QQ  +  AE  YRKA  +  D NK CNLA+CL+   R  E + +L  V      R +   
Sbjct:   179 QQAKYLSAEAVYRKAQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDV---LEYRVLGAD 235

Query:   231 YSRSFERAIQMLTELESPSVLKLTELEVGD 260
               R+ +RA ++L+ELES S+ ++ + E+ D
Sbjct:   236 DCRTRQRAEELLSELES-SLPRMRDAEMED 264

GO:0005634 "nucleus" evidence=ISM

GO:0006792 "regulation of sulfur utilization" evidence=IMP

GO:0010438 "cellular response to sulfur starvation" evidence=IEP

TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
 Identities = 74/141 (52%), Positives = 100/141 (70%)

Query:   111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA-RSQGKKIQITVEQEKSRILGNLAWAY 169
             +SGRI E  ELL++KL+ +E+   + G + K+A RS  ++   T+EQEK+RILGNLAW +
Sbjct:   136 KSGRITEVAELLEHKLRTLEQDKHYGG-RIKIAKRSHEEQNNKTIEQEKARILGNLAWVH 194

Query:   170 MQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT 229
             +Q +N+ +AEQYYR ALSL  D NK CNLAICL+ M R  EAKSLL+ VK S GN+  + 
Sbjct:   195 LQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKSLLEDVKQSLGNQWKNE 254

Query:   230 SYSRSFERAIQMLTELESPSV 250
              + +SFERA +ML E E  +V
Sbjct:   255 PFCKSFERATEMLAEREQATV 275

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 4.5e-34, P = 4.5e-34
 Identities = 97/245 (39%), Positives = 139/245 (56%)

Query:    24 SPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINA 83
             SP    K +   E + +  I      + +GD      K + ++ K  +RA      AI A
Sbjct:    41 SPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMAIVMKQQNRAEE----AIEA 96

Query:    84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143
                +     D A   + LD     +  R GR++++I LL++KL  I++G+AF G +TK A
Sbjct:    97 IKSLRVRCSDQA--QESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQKGLAFNGKRTKTA 154

Query:   144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM 203
             RSQGKK Q++VEQE +R+LGNL WA MQ++NF  AE  YR+ALS+  D NK CNL ICLM
Sbjct:   155 RSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPDNNKMCNLGICLM 214

Query:   204 HMNRVTEAKSLLQAVK--ISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDD 261
                R+ EAK  L+ VK  +  G R +D S+ +++ERA QML +L S  + +      GDD
Sbjct:   215 KQGRIDEAKETLRRVKPAVVDGPRGVD-SHLKAYERAQQMLNDLGSEMMRR-----GGDD 268

Query:   262 QKNQR 266
             +  QR
Sbjct:   269 KVEQR 273

GO:0005575 "cellular_component" evidence=ND

GO:0042802 "identical protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 88/245 (35%), Positives = 127/245 (51%)

Query:    24 SPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINA 83
             SP    K +   E + +  I      + + D      K + L+ K  +RA      AI+A
Sbjct:    31 SPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQNRAEE----AIDA 86

Query:    84 GDRVDSALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141
                + S  +D+     Q    +  I+   + GRIEE++ELL+ KL  I +G AF G  TK
Sbjct:    87 ---IQS-FRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGKPTK 142

Query:   142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAIC 201
              ARS GKK Q+TVE+E SRILGNL WAYMQ  ++  AE  YRKA  +  D NK CNL  C
Sbjct:   143 TARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNLCTC 202

Query:   202 LMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL---ESPSVLKLT-ELE 257
             L+   +  EA+S+L    +   N++  +   R   R  ++L+EL   E  +   ++ E E
Sbjct:   203 LIKQGKHDEARSILFR-DVLMENKE-GSGDPRLMARVQELLSELKPQEEEAAASVSVECE 260

Query:   258 VGDDQ 262
             VG D+
Sbjct:   261 VGIDE 265

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:4515103601 AT5G22794 "AT5G22794" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query:   111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL 162
             + GR EE++ELL+ +L  I +  AF G   K+ARS G+K Q+TVE+E SR+L
Sbjct:    86 KGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVEKETSRML 137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      575       575   0.00080  120 3  11 23  0.45    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  330 KB (2167 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  62.57u 0.11s 62.68t   Elapsed:  00:00:03
  Total cpu time:  62.57u 0.11s 62.68t   Elapsed:  00:00:03
  Start:  Fri May 10 12:16:18 2013   End:  Fri May 10 12:16:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	575
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	3e-05
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	4e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
pfam13176	36	pfam13176, TPR_7, Tetratricopeptide repeat	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-CNLAICLMHMNRVTEAKSLLQA 217
           +    NLA AY +   +E A + Y KAL L  D  K   NL +    + +  EA    + 
Sbjct: 34  ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93

Query: 218 V 218
            
Sbjct: 94  A 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL-QAV 218
            L NL   Y +  +++ A +YY KAL L  D      NLA     + +  EA     +A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 219 KI 220
           ++
Sbjct: 62  EL 63

Length = 100

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
           ++ L NL  AY++   ++ A +YY KAL L
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALEL 30

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
           +  L NL  AY++  +++ A +YY KAL L
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALEL 30

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.0 bits (107), Expect = 3e-05
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMA-VVMKQLDRSDEAIEARSGRIEEEIELLQNKL 126
                A+ L   A+      D A   +A   + +L   +EA+E      E+ +EL     
Sbjct: 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL----YEKALELDPELN 164

Query: 127 KNIEEGIAFAGVKTKMARSQG-----KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY 181
           +  E  +A   +   + R +      +K       + +  L NL   Y++   +E A +Y
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224

Query: 182 YRKALSLGVD-MNKQCNLAICLMHMNRVTEAKSLL-QAVKISAGNRQMDTSYSRSFERAI 239
           Y KAL L  D      NLA+ L+ + R  EA   L +A+++      +  +       A+
Sbjct: 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEAL 284

Query: 240 QMLTE 244
           ++L +
Sbjct: 285 ELLEK 289

Length = 291

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKALSL 188
           R    L   Y+Q  ++E A++YY KAL L
Sbjct: 2   RAYYLLGQIYLQLGDYEEAKEYYEKALEL 30

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKALSL 188
             L NL  AY +  ++E A + Y KAL L
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALEL 30

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC--NLAICLMHMNRVTEA--K 212
           + +  L NL  A  +  +++ A + Y KAL L  D N +   NLA+  + + +  E   +
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPD-NAEAYYNLALAYLKLGKDYEEALE 59

Query: 213 SLLQAVKIS 221
            L +A+++ 
Sbjct: 60  DLEKALELD 68

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKAL----SLGVDMNKQC----NLAICLMHMNRVTEA 211
             L NLA    +  +++ A +   KAL     LG D  +      NLA   + +    EA
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 212 KSLL-QAVKI 220
              L +A+ +
Sbjct: 66  LEYLEKALAL 75

Length = 78

>gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ 195
           L NL   Y +  ++E A   Y +AL+L  D   +
Sbjct: 2   LSNLGRLYRKLGDYEKAISLYERALALAKDPEDR 35

Length = 36

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
           E +R L NLA  Y+   +++ A +Y  KAL+L
Sbjct: 44  ETARALNNLARLYLALGDYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKALSL 188
             L NLA A   Q  +E AE+   +AL++
Sbjct: 3   ASLNNLARALRAQGRYEEAEELLEEALAI 31

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.48
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.48
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.43
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.41
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.36
PRK15359	144	type III secretion system chaperone protein SscB;	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.34
PRK12370	553	invasion protein regulator; Provisional	99.33
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.33
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.32
PRK11189	296	lipoprotein NlpI; Provisional	99.31
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.3
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.29
PRK12370	553	invasion protein regulator; Provisional	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.28
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.25
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.22
KOG1125	579	consensus TPR repeat-containing protein [General f	99.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.16
KOG0553	304	consensus TPR repeat-containing protein [General f	99.16
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.15
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.07
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.06
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.06
PLN02789	320	farnesyltranstransferase	99.05
KOG0553	304	consensus TPR repeat-containing protein [General f	99.04
KOG1125	579	consensus TPR repeat-containing protein [General f	99.04
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.96
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.94
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.94
KOG2003	840	consensus TPR repeat-containing protein [General f	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.91
PRK14574	822	hmsH outer membrane protein; Provisional	98.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.79
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.79
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.72
PRK14574	822	hmsH outer membrane protein; Provisional	98.71
KOG2076	895	consensus RNA polymerase III transcription factor	98.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.7
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.7
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.7
KOG1129	478	consensus TPR repeat-containing protein [General f	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.66
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.59
PLN02789	320	farnesyltranstransferase	98.59
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.56
PRK10803	263	tol-pal system protein YbgF; Provisional	98.56
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.54
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.5
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.48
PRK11906	458	transcriptional regulator; Provisional	98.47
PF12688	120	TPR_5: Tetratrico peptide repeat	98.46
KOG2076	895	consensus RNA polymerase III transcription factor	98.45
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.45
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.42
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.39
KOG1129	478	consensus TPR repeat-containing protein [General f	98.39
PRK10803	263	tol-pal system protein YbgF; Provisional	98.37
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.37
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.32
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.26
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.26
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.18
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.17
KOG2003	840	consensus TPR repeat-containing protein [General f	98.12
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.12
PRK15331	165	chaperone protein SicA; Provisional	98.09
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.06
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.04
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.04
PF13371	73	TPR_9: Tetratricopeptide repeat	98.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.02
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.01
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.01
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.97
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.96
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.95
PLN03218	1060	maturation of RBCL 1; Provisional	97.95
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.92
PLN03218	1060	maturation of RBCL 1; Provisional	97.89
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.86
PLN03077	857	Protein ECB2; Provisional	97.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.82
PF13428	44	TPR_14: Tetratricopeptide repeat	97.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.8
PF13512	142	TPR_18: Tetratricopeptide repeat	97.8
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.76
PLN03077	857	Protein ECB2; Provisional	97.76
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.71
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.7
PF13431	34	TPR_17: Tetratricopeptide repeat	97.69
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.68
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.65
PRK11906	458	transcriptional regulator; Provisional	97.64
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.62
PRK04841	903	transcriptional regulator MalT; Provisional	97.59
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.59
KOG4234	271	consensus TPR repeat-containing protein [General f	97.56
PF13431	34	TPR_17: Tetratricopeptide repeat	97.53
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
PF13512	142	TPR_18: Tetratricopeptide repeat	97.52
KOG4555	175	consensus TPR repeat-containing protein [Function	97.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.43
KOG4234	271	consensus TPR repeat-containing protein [General f	97.43
PRK04841	903	transcriptional regulator MalT; Provisional	97.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.34
KOG4555	175	consensus TPR repeat-containing protein [Function	97.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.26
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.22
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.2
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.17
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.05
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.98
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.91
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.82
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.81
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.81
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.63
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.41
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.31
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.29
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.25
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.11
PF13428	44	TPR_14: Tetratricopeptide repeat	96.05
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.92
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.87
KOG1585	308	consensus Protein required for fusion of vesicles	95.72
PRK10941	269	hypothetical protein; Provisional	95.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.58
KOG1585	308	consensus Protein required for fusion of vesicles	95.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.35
KOG1586	288	consensus Protein required for fusion of vesicles	95.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.26
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.18
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.18
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.16
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.15
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.15
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.07
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.06
KOG2471	696	consensus TPR repeat-containing protein [General f	95.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.0
KOG2471	696	consensus TPR repeat-containing protein [General f	94.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.59
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.56
KOG1586	288	consensus Protein required for fusion of vesicles	94.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.49
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.37
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.36
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.04
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.85
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.59
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.49
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.17
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.93
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.89
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.8
KOG4340	459	consensus Uncharacterized conserved protein [Funct	92.52
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	92.49
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.48
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.91
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.89
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.77
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.54
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.51
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.32
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.3
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.94
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.83
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.78
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.47
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.11
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.08
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.9
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.57
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	88.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.36
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.22
KOG3364	149	consensus Membrane protein involved in organellar	88.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.99
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.52
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.83
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.41
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.03
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	85.89
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.37
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.32
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	83.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.57
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.36
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.1
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.03
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.9
KOG2300	629	consensus Uncharacterized conserved protein [Funct	80.67
COG2912	269	Uncharacterized conserved protein [Function unknow	80.57
KOG2422	665	consensus Uncharacterized conserved protein [Funct	80.52
PRK10941	269	hypothetical protein; Provisional	80.03

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.2e-19  Score=195.69  Aligned_cols=225  Identities=13%  Similarity=0.084  Sum_probs=196.6

Q ss_pred             hhhhhH-hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH---------
Q 038048           41 GDIFHV-IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA---------  110 (575)
Q Consensus        41 ae~y~~-~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~---------  110 (575)
                      .+.|-. +...|..-..+...+.+...+|+.-.|+..|++|++++|+..+||+|||++|...+.|++|+.+         
T Consensus       204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp  283 (966)
T KOG4626|consen  204 KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP  283 (966)
T ss_pred             HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence            345554 4455556666777888888899999999999999999999999999999999999999999988         


Q ss_pred             --------------HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048          111 --------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus       111 --------------~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a  168 (575)
                                    .+|.++.+|..+++.+...+.-...+.|++.++.+.|.        ..++.+.|+++++++|||.+
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni  363 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI  363 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence                          46777888999999998777777788999999999888        46799999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHHHH
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD----TSYSRSFERAIQMLT  243 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~----~~~l~slerA~elL~  243 (575)
                      |.++|.+++|..+|++||++.|+... ..|||.+|..+|++++|+.+|+.+|.+.|.-..+    -..++.+++...++.
T Consensus       364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q  443 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ  443 (966)
T ss_pred             HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence            99999999999999999999999999 9999999999999999999999999999964321    134577788999999


Q ss_pred             HhccccccCcccccccchhhhc
Q 038048          244 ELESPSVLKLTELEVGDDQKNQ  265 (575)
Q Consensus       244 ele~al~~~p~~~e~~~~~~~~  265 (575)
                      .++.++.++|.+++.|.++..+
T Consensus       444 ~y~rAI~~nPt~AeAhsNLasi  465 (966)
T KOG4626|consen  444 CYTRAIQINPTFAEAHSNLASI  465 (966)
T ss_pred             HHHHHHhcCcHHHHHHhhHHHH
Confidence            9999999999999988775443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-18  Score=190.15  Aligned_cols=220  Identities=18%  Similarity=0.113  Sum_probs=172.6

Q ss_pred             hhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----
Q 038048           43 IFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE-----  117 (575)
Q Consensus        43 ~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee-----  117 (575)
                      .+..+...|..-..|.+.+.++--...+++|+..|.+|+.+.|+.+.++.|||.+|.++|..|-||..|.++++.     
T Consensus       241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~  320 (966)
T KOG4626|consen  241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP  320 (966)
T ss_pred             HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence            334455566677788888888877778888888888888888888888888888888888888888876555542     


Q ss_pred             ------------------HHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH
Q 038048          118 ------------------EIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus       118 ------------------Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                                        +...+...+.+-+.....+.|++.+++++|.        ..++.+.|+.+.+++|||.+|.+
T Consensus       321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq  400 (966)
T KOG4626|consen  321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ  400 (966)
T ss_pred             HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence                              2223333333333334567899999999988        45788899999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH----HHHHHHHHHHHHHhc
Q 038048          172 QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY----SRSFERAIQMLTELE  246 (575)
Q Consensus       172 qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~----l~slerA~elL~ele  246 (575)
                      +|++++|+.+|++||.|+|.++. +.|+|++|.++|+..+|+++|.+|+.++|.-.++...    .+..+...+++...+
T Consensus       401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~  480 (966)
T KOG4626|consen  401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR  480 (966)
T ss_pred             cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence            99999999999999999999999 9999999999999999999999999999964321111    233345677888888


Q ss_pred             cccccCcccccccchh
Q 038048          247 SPSVLKLTELEVGDDQ  262 (575)
Q Consensus       247 ~al~~~p~~~e~~~~~  262 (575)
                      .++.++|++++.+.++
T Consensus       481 ~aLklkPDfpdA~cNl  496 (966)
T KOG4626|consen  481 TALKLKPDFPDAYCNL  496 (966)
T ss_pred             HHHccCCCCchhhhHH
Confidence            8899999999776663

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.68  E-value=4e-16  Score=167.67  Aligned_cols=175  Identities=19%  Similarity=0.164  Sum_probs=152.1

Q ss_pred             CCCCCCCccccccCCCCCCCCCcCCCCcCccchhhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 038048            8 NFSTPPPTWRKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV   87 (575)
Q Consensus         8 ~~~~~pp~~l~th~~~~Plse~r~~~~~~~r~Rae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~   87 (575)
                      +|.+.||+|++||    |||++||++.   ++|+++++.....++.++.+++++....+..........+.--. .++.-
T Consensus       234 ~~~~~~p~yl~TH----Plp~~RIa~l---r~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~  305 (484)
T COG4783         234 RYGGQPPEYLLTH----PLPEERIADL---RNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKR-SKRGG  305 (484)
T ss_pred             hcCCCCChHHhcC----CCchhHHHHH---HHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHH-hCccc
Confidence            6778999999999    9999999999   99999999999999999999999988777765554444333222 23677


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..++|+.|..++..|++++|+.....                                     .+...|+++-.+...+.
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~-------------------------------------L~~~~P~N~~~~~~~~~  348 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQP-------------------------------------LIAAQPDNPYYLELAGD  348 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHH-------------------------------------HHHhCCCCHHHHHHHHH
Confidence            88999999999999999999987322                                     13457888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      +++..++.++|++.|++++.++|+... .+|+|.+|++.|++.+|+.+++..+..+|+++.
T Consensus       349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            999999999999999999999999988 999999999999999999999999999998874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.55  E-value=1e-13  Score=128.92  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHH
Q 038048           73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQI  152 (575)
Q Consensus        73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL  152 (575)
                      -+.+|+++++.+|+.   ++++|.++.+.|++++|+.++..                                     ++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al   51 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSW-------------------------------------LV   51 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HH
Confidence            357899999999875   66789999999999999988533                                     35


Q ss_pred             hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048          153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY  231 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~  231 (575)
                      .++|.+..+++++|.++..+|++++|+..|++|++++|+++. ++++|.+|..+|++++|+..|++++.+.|++..   +
T Consensus        52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~---~  128 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS---W  128 (144)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---H
Confidence            679999999999999999999999999999999999999999 999999999999999999999999999998762   2


Q ss_pred             HHHHHHHHHHHHH
Q 038048          232 SRSFERAIQMLTE  244 (575)
Q Consensus       232 l~slerA~elL~e  244 (575)
                      ....+.++.++..
T Consensus       129 ~~~~~~~~~~l~~  141 (144)
T PRK15359        129 SEIRQNAQIMVDT  141 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334445554443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.53  E-value=6e-13  Score=149.80  Aligned_cols=159  Identities=11%  Similarity=0.049  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..++..+++++|+..|++++.++|....++.++|.+|..+|++++|+..+..+++..           +.....
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----------p~~~~~  401 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----------SEDPDI  401 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHH
Confidence            445566677788999999999999999999999999999999999999999999866554431           122233


Q ss_pred             HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                      +..++.++...|+        +.++.++|++..++.+||.+|..+|++++|+.+|++++.+.|+++. +.++|.+|..+|
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            3444444444444        3568889999999999999999999999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCC
Q 038048          207 RVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n  225 (575)
                      ++++|+.+|++++.+.|++
T Consensus       482 ~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       482 KFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             CHHHHHHHHHHHHhcCCcc
Confidence            9999999999999998864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.53  E-value=8.9e-13  Score=148.43  Aligned_cols=76  Identities=14%  Similarity=0.026  Sum_probs=53.3

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .++.++|....++.++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++
T Consensus       356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            345566766667777777777777777777777777777777766 6777777777777777777777777776654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.48  E-value=1.2e-12  Score=128.38  Aligned_cols=123  Identities=18%  Similarity=0.128  Sum_probs=113.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .++.++++..|+++++.+|++..+|..||.+|...|++++|+.++..                                 
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~---------------------------------   98 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQ---------------------------------   98 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------------
Confidence            45678999999999999999999999999999999999999998543                                 


Q ss_pred             chhhHHhhcCCcHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          147 GKKIQITVEQEKSRILGNLAWA-YMQQNN--FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~a-Y~~qGr--yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                          ++.++|++..++.++|.+ |...|+  +++|+..|+++++++|++.. +++||.++..+|++++|+.++++++++.
T Consensus        99 ----Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370         99 ----ALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ----HHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                356799999999999987 578888  59999999999999999999 9999999999999999999999999999


Q ss_pred             CCCC
Q 038048          223 GNRQ  226 (575)
Q Consensus       223 P~n~  226 (575)
                      |.+.
T Consensus       175 ~~~~  178 (198)
T PRK10370        175 SPRV  178 (198)
T ss_pred             CCCc
Confidence            8765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.48  E-value=2.6e-12  Score=146.51  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEM----AEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeE----Ae~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++.++|++..++++||.+|..+|++++    |+.+|+++++++|++.. +.+||.+|..+|++++|+.+|++++.++|++
T Consensus       238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~  317 (656)
T PRK15174        238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL  317 (656)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            455667777777777777777777775    67777777777777776 7777777777777777777777777777765


Q ss_pred             C
Q 038048          226 Q  226 (575)
Q Consensus       226 ~  226 (575)
                      .
T Consensus       318 ~  318 (656)
T PRK15174        318 P  318 (656)
T ss_pred             H
Confidence            4

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=4.5e-12  Score=149.96  Aligned_cols=165  Identities=12%  Similarity=0.051  Sum_probs=130.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh-----------------------cCHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS-----------------------GRIEE  117 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~-----------------------gaLee  117 (575)
                      +......+++++|+..|++++...|.. ..++++|.++.+.|++++|+.++.                       +.+++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e  594 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL  594 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence            344456788999999999887765553 457788999999999999888732                       55555


Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          118 EIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       118 Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                      ++..+...+...+. ...+.+++.++...|+        ..++.++|++..+++++|.++..+|++++|+.+|++|++++
T Consensus       595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            66666666654443 4456677777777776        45688899999999999999999999999999999999999


Q ss_pred             CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          190 VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       190 Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      |+++. +++||.+|..+|++++|+.+|++++++.|+...
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            99998 899999999999999999999999999887653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.2e-13  Score=152.76  Aligned_cols=112  Identities=21%  Similarity=0.201  Sum_probs=94.8

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD  228 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~  228 (575)
                      .++.++|.+.++||-||.+|+++++++.|+-+|++|++|+|.+.. .+.+|.+|...|+.++|+.+|++|+.++|.++-.
T Consensus       480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~  559 (638)
T KOG1126|consen  480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC  559 (638)
T ss_pred             hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence            357889999999999999999999999999999999999999999 9999999999999999999999999999988632


Q ss_pred             h----hHHHHHHHHHHHHHHhccccccCcccccccch
Q 038048          229 T----SYSRSFERAIQMLTELESPSVLKLTELEVGDD  261 (575)
Q Consensus       229 ~----~~l~slerA~elL~ele~al~~~p~~~e~~~~  261 (575)
                      .    ..+-.+.+..++|.++|..-.+.|++.-++.-
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l  596 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKELVPQESSVFAL  596 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence            1    12344566777777777777777877755433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=2.1e-11  Score=114.73  Aligned_cols=159  Identities=17%  Similarity=0.115  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..+...+++++|+.+|++++..+|.+..++..+|.+|..+|++++|+.++...++....           ....
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~  101 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-----------NGDV  101 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------CHHH
Confidence            34455677788999999999999999999999999999999999999999999997665543211           1112


Q ss_pred             HhHHHHHHHHhch--------hhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          136 AGVKTKMARSQGK--------KIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                      +.+++..+...|+        ..++..  .+....++.++|.+|..+|++++|+.+|.+++.++|++.. +..+|.++..
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  181 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL  181 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence            2223333333333        112222  2455668999999999999999999999999999999988 9999999999


Q ss_pred             cCCHHHHHHHHHHHHHHcCCC
Q 038048          205 MNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       205 qGr~eEAi~lLekALel~P~n  225 (575)
                      +|++++|+.++++++...|.+
T Consensus       182 ~~~~~~A~~~~~~~~~~~~~~  202 (234)
T TIGR02521       182 RGQYKDARAYLERYQQTYNQT  202 (234)
T ss_pred             cCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999986644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.43  E-value=2.5e-12  Score=115.49  Aligned_cols=115  Identities=19%  Similarity=0.138  Sum_probs=106.2

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048           75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV  154 (575)
Q Consensus        75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L  154 (575)
                      +.|++++..+|.+..+++.+|..+...|++++|+.++..                                     .+.+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------~~~~   46 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQL-------------------------------------LAAY   46 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHH-------------------------------------HHHh
Confidence            468899999999999999999999999999999988422                                     2456


Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|.+..++.++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+..|+++++.+|++.
T Consensus        47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            8999999999999999999999999999999999999999 99999999999999999999999999999765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.41  E-value=2.4e-11  Score=127.18  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=101.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +..+...|++++|+.+|.++++.+|....++..|+.+|...|++++|++.+...+........      .....++..++
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~la  187 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR------VEIAHFYCELA  187 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch------HHHHHHHHHHH
Confidence            333444455555555555555554444445555555555555555555543322211000000      00011223344


Q ss_pred             HHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHH
Q 038048          141 KMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTE  210 (575)
Q Consensus       141 ~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eE  210 (575)
                      ..+...++        ..++.++|+...+++.+|.+|..+|++++|+.+|++++..+|++..  +..|+.+|..+|++++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            44444444        2356678888889999999999999999999999999999998764  6789999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 038048          211 AKSLLQAVKISAGNR  225 (575)
Q Consensus       211 Ai~lLekALel~P~n  225 (575)
                      |+.+++++++..|+.
T Consensus       268 A~~~l~~~~~~~p~~  282 (389)
T PRK11788        268 GLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999988864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.41  E-value=2.7e-11  Score=138.18  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ++..+++++|+..|++++..+|. .......++.+|.+.|++++|+..+...++.....           ...+.+++.+
T Consensus       187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~Lg~~  255 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-----------AALRRSLGLA  255 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHH
Confidence            44556666666666666655432 22233344556666666666666544433321100           0011111111


Q ss_pred             HHHhch------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          143 ARSQGK------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       143 l~sqg~------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      +...|+            +.++.++|++..++.++|.+|..+|++++|+.+|+++++++|++.. +.+||.+|..+|+++
T Consensus       256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            111110            2345556666666666666666666666666666666666666666 666666666666666


Q ss_pred             HHHHHHHHHHHHcCCC
Q 038048          210 EAKSLLQAVKISAGNR  225 (575)
Q Consensus       210 EAi~lLekALel~P~n  225 (575)
                      +|+..|++++..+|++
T Consensus       336 eA~~~l~~al~~~P~~  351 (656)
T PRK15174        336 AASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHhCccc
Confidence            6666666666666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.38  E-value=4.5e-11  Score=125.19  Aligned_cols=60  Identities=15%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048           53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG  113 (575)
Q Consensus        53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g  113 (575)
                      ....|.. +......+++++|+..|.+++..+|++..+++.+|.+|...|++++|+.++..
T Consensus        35 ~~~~y~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (389)
T PRK11788         35 LSRDYFK-GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQN   94 (389)
T ss_pred             ccHHHHH-HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            3344444 35567889999999999999999999999999999999999999999988543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=4.3e-11  Score=141.72  Aligned_cols=200  Identities=13%  Similarity=0.026  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC---------------------
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR---------------------  114 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga---------------------  114 (575)
                      .|...+..+. .+++++|+..|.+++...|+.. ....+|.++.+.|++++|+.++...                     
T Consensus       479 a~~~LG~~l~-~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G  556 (987)
T PRK09782        479 AWNRLAKCYR-DTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG  556 (987)
T ss_pred             HHHHHHHHHH-hCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence            3444444444 4789999999999999999754 4667788889999999999985432                     


Q ss_pred             -HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          115 -IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA  185 (575)
Q Consensus       115 -LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA  185 (575)
                       +++++..+...+...+........++..+...|+        ..++.++|+ ..++.++|.++.++|++++|+..|+++
T Consensus       557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~A  635 (987)
T PRK09782        557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAA  635 (987)
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             2333444444443221111222222222322244        456888997 889999999999999999999999999


Q ss_pred             HHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccccc
Q 038048          186 LSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTELEV  258 (575)
Q Consensus       186 LeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~e~  258 (575)
                      ++++|++.. +++||.+|..+|++++|+.+|+++++++|++....    ......++..+++..++.++.+.|+....
T Consensus       636 L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        636 LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI  713 (987)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence            999999999 99999999999999999999999999999876311    11233445566666777777777766533

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=2.1e-11  Score=121.54  Aligned_cols=131  Identities=18%  Similarity=0.095  Sum_probs=118.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      ..+.-++..+|+..|...+++||+.+|++..++..+|.+|..+|+.+-|.+.|.+                         
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk-------------------------   94 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK-------------------------   94 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHH-------------------------
Confidence            3445678899999999999999999999999999999999999999999998655                         


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNK-QCNLAICLMHMNRVTEAKSLL  215 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~-~~NLA~iy~~qGr~eEAi~lL  215 (575)
                                  ++.++|++.++++|.|+.++.+|+|++|.++|++|+..  .+.... +-|+|.|-+++|+++.|..+|
T Consensus        95 ------------Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063          95 ------------ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             ------------HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence                        36789999999999999999999999999999999963  344445 889999999999999999999


Q ss_pred             HHHHHHcCCCC
Q 038048          216 QAVKISAGNRQ  226 (575)
Q Consensus       216 ekALel~P~n~  226 (575)
                      +++|+++|+.+
T Consensus       163 ~raL~~dp~~~  173 (250)
T COG3063         163 KRALELDPQFP  173 (250)
T ss_pred             HHHHHhCcCCC
Confidence            99999999876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.36  E-value=6.9e-11  Score=132.71  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +...|++..+++++|.+|..+|++++|+.+|+++++..|++.. +.++|.+|...|+ .+|+.++++++.+.|++.
T Consensus       763 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~  837 (899)
T TIGR02917       763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP  837 (899)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence            4445666666666666666666666666666666666666665 6666666666666 556666666666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.34  E-value=1.4e-11  Score=114.68  Aligned_cols=125  Identities=14%  Similarity=0.029  Sum_probs=106.6

Q ss_pred             hhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048           42 DIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL  121 (575)
Q Consensus        42 e~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l  121 (575)
                      +.|.......+..  +...+......|++++|+.+|++++..+|.+..+++++|.++..+|++++|+..+..        
T Consensus        14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~--------   83 (144)
T PRK15359         14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH--------   83 (144)
T ss_pred             HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH--------
Confidence            4454444443322  344566778899999999999999999999999999999999999999999998544        


Q ss_pred             HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048          122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI  200 (575)
Q Consensus       122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~  200 (575)
                                                   ++.++|+++.+++++|.+|..+|++++|+..|++|+++.|+++. +.++|.
T Consensus        84 -----------------------------Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~  134 (144)
T PRK15359         84 -----------------------------ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN  134 (144)
T ss_pred             -----------------------------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence                                         35679999999999999999999999999999999999999999 888888


Q ss_pred             HHHHc
Q 038048          201 CLMHM  205 (575)
Q Consensus       201 iy~~q  205 (575)
                      +....
T Consensus       135 ~~~~l  139 (144)
T PRK15359        135 AQIMV  139 (144)
T ss_pred             HHHHH
Confidence            87654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=5.6e-12  Score=139.64  Aligned_cols=148  Identities=18%  Similarity=0.154  Sum_probs=124.3

Q ss_pred             hhhhHhhcCC-CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           42 DIFHVIHKVP-SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        42 e~y~~~~~~p-s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      ..|.....++ ...+.|.-.++......++|.|..+|++||..+|++..|||+||.+|.++++++.|+-.+++       
T Consensus       442 k~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk-------  514 (638)
T KOG1126|consen  442 KCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK-------  514 (638)
T ss_pred             HHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh-------
Confidence            4455444433 35666666777777778888888888888888888888888888888888888888877544       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++.++|.+..++..+|.+|.+.|+.++|+.+|++|+.++|.++- .++.|
T Consensus       515 ------------------------------A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  515 ------------------------------AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             ------------------------------hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence                                          46789999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          200 ICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       200 ~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|..+++++||...|+++.++-|++.
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es  591 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQES  591 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchH
Confidence            999999999999999999999999764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=1.2e-10  Score=109.69  Aligned_cols=165  Identities=12%  Similarity=0.075  Sum_probs=130.2

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.....+...+.++...+++++|+.+|++++...|....+++++|.+|...|++++|+..+...+....         .
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~  131 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---------Y  131 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc---------c
Confidence            3444445555667778899999999999999999999999999999999999999999999766543210         0


Q ss_pred             HHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048          130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI  200 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~  200 (575)
                      ......+.+++.++...|+        ..++...|++..++..+|.+|..+|++++|+.++++++.+.|++.. +..++.
T Consensus       132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  211 (234)
T TIGR02521       132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR  211 (234)
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            0011122334444444444        3456778888999999999999999999999999999999998888 888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHcC
Q 038048          201 CLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       201 iy~~qGr~eEAi~lLekALel~P  223 (575)
                      ++...|+.++|..+.+.+....|
T Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       212 IARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhCc
Confidence            99999999999999988776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.34  E-value=5.6e-11  Score=143.26  Aligned_cols=56  Identities=13%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      +..++..+++++|+.+|+++++.+|++..+++.||.+|.++|++++|+.++..+++
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~  331 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA  331 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999766654

>PRK12370 invasion protein regulator; Provisional

Probab=99.33  E-value=5.3e-11  Score=133.04  Aligned_cols=147  Identities=8%  Similarity=-0.098  Sum_probs=113.8

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +++++|+..+++|++++|++..++..+|.++...|++++|+.++.++++..           +.....+..++.++...|
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------P~~~~a~~~lg~~l~~~G  386 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-----------PISADIKYYYGWNLFMAG  386 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCC
Confidence            458999999999999999999999999999999999999999866654432           222223334444444444


Q ss_pred             h--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          148 K--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-VDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       148 ~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-Pdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      +        +.++.++|++..+++.++.+++.+|++++|+..++++++.. |+++. +.+||.+|..+|++++|+..+++
T Consensus       387 ~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~  466 (553)
T PRK12370        387 QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE  466 (553)
T ss_pred             CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4        34677888887777777777788888888888888888775 67777 88888888888888888888888


Q ss_pred             HHHHcCCC
Q 038048          218 VKISAGNR  225 (575)
Q Consensus       218 ALel~P~n  225 (575)
                      ++...|.+
T Consensus       467 ~~~~~~~~  474 (553)
T PRK12370        467 ISTQEITG  474 (553)
T ss_pred             hhhccchh
Confidence            77766653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.33  E-value=1.4e-10  Score=130.27  Aligned_cols=176  Identities=18%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--------------
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE--------------  116 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe--------------  116 (575)
                      |.....+...+.++...+++++|+.+|.+++..+|.+..+++++|.++...|++++|+..+...++              
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  541 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG  541 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            333445555666777788999999999999998888888888999999999999998888544332              


Q ss_pred             ---------HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048          117 ---------EEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAE  179 (575)
Q Consensus       117 ---------eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe  179 (575)
                               ++...+...+...+........++..+...|+        +..+...|.+..++..+|.+|...|++++|+
T Consensus       542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  621 (899)
T TIGR02917       542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV  621 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                     22222222222222222223334444444444        2234446666677777777777777777777


Q ss_pred             HHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       180 ~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|+++++++|++.. +..+|.+|...|++++|+.+|++++...|++.
T Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            777777777777776 77777777777777777777777777766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.32  E-value=8.1e-12  Score=138.00  Aligned_cols=256  Identities=18%  Similarity=0.123  Sum_probs=181.8

Q ss_pred             CCcHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHH
Q 038048           53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN  124 (575)
Q Consensus        53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~  124 (575)
                      ..........++...++++.|+.+|.+|++.        .+.....+..+|.+|..+++|++|+.+|..++..-+.+++.
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3334445667788899999999999999987        55566677789999999999999999988888777777766


Q ss_pred             HHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          125 KLKNIEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       125 ~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                      .+.   .-..++.+++.++...|+        +.++.|        .|+-...+.+++.++..++++++|+.+|+++++|
T Consensus       278 ~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  278 DHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             CCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            653   223567788888877777        222222        3455568999999999999999999999999998


Q ss_pred             C-----CCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhccccccCccccccc
Q 038048          189 G-----VDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVG  259 (575)
Q Consensus       189 d-----Pdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~ele~al~~~p~~~e~~  259 (575)
                      .     +++   +. ..|||.+|..+|+++||+.+|++|+.+...-.+...  ...+.....++..-..+ ..+.+++.-
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~--~~~~~~l~~la~~~~~~-k~~~~a~~l  431 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD--YGVGKPLNQLAEAYEEL-KKYEEAEQL  431 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC--hhhhHHHHHHHHHHHHh-cccchHHHH
Confidence            5     344   23 779999999999999999999999998754332100  00111122222111111 011111110


Q ss_pred             chhhhcCCCCCCCCCCCCCccccCcCCCCCCCCchhhhhhhhcCCCccchhhhhhhHhHhhccccccccccccccCcchh
Q 038048          260 DDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKL  339 (575)
Q Consensus       260 ~~~~~~~s~~~p~~r~~~~~~~~s~lg~~~~~l~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (575)
                      ...              +..|. ..+|+  +|++....-.+|+..            |.-++++|.|..+...+-++.+-
T Consensus       432 ~~~--------------~~~i~-~~~g~--~~~~~~~~~~nL~~~------------Y~~~g~~e~a~~~~~~~~~~~~~  482 (508)
T KOG1840|consen  432 FEE--------------AKDIM-KLCGP--DHPDVTYTYLNLAAL------------YRAQGNYEAAEELEEKVLNAREQ  482 (508)
T ss_pred             HHH--------------HHHHH-HHhCC--CCCchHHHHHHHHHH------------HHHcccHHHHHHHHHHHHHHHHH
Confidence            010              11366 66777  899999999999988            88999999999998888888774


Q ss_pred             ccCCC
Q 038048          340 MSSGP  344 (575)
Q Consensus       340 ~~~~~  344 (575)
                      .. |.
T Consensus       483 ~~-~~  486 (508)
T KOG1840|consen  483 RL-GT  486 (508)
T ss_pred             cC-CC
Confidence            43 44

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.31  E-value=3.4e-11  Score=124.40  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHcCC---C-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           70 PSRAVSLFWAAINAGD---R-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p---~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .+.++..+.++|...+   . .+..++++|.+|...|++++|+..+..                                
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~--------------------------------   89 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQ--------------------------------   89 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------------------
Confidence            4556666666664322   2 244566677777777777776665322                                


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                           ++.++|+++.+|+++|.+|..+|++++|+..|++|++++|++.. ++++|.+|..+|++++|+..|+++++++|+
T Consensus        90 -----Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189         90 -----ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             -----HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                 24456666667777777777777777777777777777777666 667777777777777777777777776665


Q ss_pred             CC
Q 038048          225 RQ  226 (575)
Q Consensus       225 n~  226 (575)
                      ++
T Consensus       165 ~~  166 (296)
T PRK11189        165 DP  166 (296)
T ss_pred             CH
Confidence            53

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.30  E-value=8.1e-11  Score=134.89  Aligned_cols=148  Identities=11%  Similarity=0.047  Sum_probs=127.2

Q ss_pred             hhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           41 GDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        41 ae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      .+........+.....+...+.+....+.+++|+.+++.+++..|++..++.++|.++.+++++++|+.....       
T Consensus        73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~-------  145 (694)
T PRK15179         73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIEL-------  145 (694)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHH-------
Confidence            3444445555555566666667777888899999999999999999999999999999999999999887332       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++..+|++..+++.+|.++.++|+|++|+.+|+++++.+|++.. +.++|
T Consensus       146 ------------------------------~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a  195 (694)
T PRK15179        146 ------------------------------YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA  195 (694)
T ss_pred             ------------------------------HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                                          35679999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          200 ICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       200 ~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+|+..|+.++|...|+++++.....
T Consensus       196 ~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        196 QSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999987643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.29  E-value=2e-10  Score=138.49  Aligned_cols=168  Identities=13%  Similarity=0.066  Sum_probs=128.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH---------------------
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE---------------------  117 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee---------------------  117 (575)
                      ..+..+...+++++|+.+|+++++.+|++..+++.||.+|.++|++++|+..+...++.                     
T Consensus       466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~  545 (1157)
T PRK11447        466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD  545 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH
Confidence            34455667899999999999999999999999999999999999999999986554432                     


Q ss_pred             --HHHHHHHHHH--------hhHHH--HHHHhHHHHHHHHhch----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038048          118 --EIELLQNKLK--------NIEEG--IAFAGVKTKMARSQGK----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY  181 (575)
Q Consensus       118 --Ai~lL~~~L~--------l~~~a--~a~~~nla~al~sqg~----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~  181 (575)
                        ++..+.....        .+...  .......+..+...|+    ...+...|.++.++++||.+|.++|++++|+.+
T Consensus       546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~  625 (1157)
T PRK11447        546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA  625 (1157)
T ss_pred             HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence              1111111000        00000  0011233444455555    234556888889999999999999999999999


Q ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          182 YRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       182 yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |+++++++|++.. +++||.+|..+|++++|+.+|++++...|++.
T Consensus       626 y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~  671 (1157)
T PRK11447        626 YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL  671 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence            9999999999999 99999999999999999999999999888765

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=5.7e-11  Score=132.80  Aligned_cols=144  Identities=13%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC---------HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR---------SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr---------ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      +++++|+.+|++|++++|++..++.+||.+|...+.         +++|+.++.++++           ..+.....+..
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----------ldP~~~~a~~~  343 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----------LDHNNPQALGL  343 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----------cCCCCHHHHHH
Confidence            457899999999999999999999999998875433         5666665433322           22222222222


Q ss_pred             HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      ++.++...|+        +.++.++|+++.+++++|.+|..+|++++|+.+|++|++++|++.. .+.++.++..+|+++
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~e  423 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGID  423 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHH
Confidence            2222222222        2345566666666666666666666666666666666666666655 444555555566666


Q ss_pred             HHHHHHHHHHHHc
Q 038048          210 EAKSLLQAVKISA  222 (575)
Q Consensus       210 EAi~lLekALel~  222 (575)
                      +|+..+++++...
T Consensus       424 eA~~~~~~~l~~~  436 (553)
T PRK12370        424 DAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHHHHHhc
Confidence            6666666666553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.28  E-value=2e-10  Score=118.68  Aligned_cols=128  Identities=13%  Similarity=-0.049  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      |...+.++...|++++|+..|.++++.+|++..+++++|.+|...|++++|++.+..                       
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~-----------------------  123 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS-----------------------  123 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------
Confidence            555666777889999999999999999999999999999999999999999988533                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL  215 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lL  215 (575)
                                    ++.++|++..++.++|.+|..+|++++|+..|+++++++|+++. ... ..++...+++++|+..|
T Consensus       124 --------------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        124 --------------VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENL  188 (296)
T ss_pred             --------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHH
Confidence                          35679999999999999999999999999999999999999986 222 23455678999999999


Q ss_pred             HHHHHHc
Q 038048          216 QAVKISA  222 (575)
Q Consensus       216 ekALel~  222 (575)
                      .+++...
T Consensus       189 ~~~~~~~  195 (296)
T PRK11189        189 KQRYEKL  195 (296)
T ss_pred             HHHHhhC
Confidence            8877653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.25  E-value=2e-10  Score=109.10  Aligned_cols=122  Identities=18%  Similarity=0.104  Sum_probs=104.3

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      ++..+..|.+|..+.+.|++++|+.++.-                                     ...++|.+...|++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~-------------------------------------L~~~Dp~~~~y~~g   74 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQL-------------------------------------LTIYDAWSFDYWFR   74 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------------HHHhCcccHHHHHH
Confidence            45567889999999999999999998422                                     35679999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT  243 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~  243 (575)
                      ||.++..+|+|++|+..|.+|+.++|+++. ++|+|.||+..|+.++|++.|+.++.....++   .+..-.++|+.+|.
T Consensus        75 LG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~---~~~~l~~~A~~~L~  151 (157)
T PRK15363         75 LGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS---EHQILRQRAEKMLQ  151 (157)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh---hHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 99999999999999999999999999875433   23334456777776


Q ss_pred             Hhc
Q 038048          244 ELE  246 (575)
Q Consensus       244 ele  246 (575)
                      .+.
T Consensus       152 ~l~  154 (157)
T PRK15363        152 QLS  154 (157)
T ss_pred             Hhh
Confidence            553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2e-10  Score=123.46  Aligned_cols=118  Identities=22%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .++.++|+.+|++|+++||+...+|..+|.-|..+.+...|++.|..+                                
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA--------------------------------  390 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA--------------------------------  390 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH--------------------------------
Confidence            567899999999999999999999999999999999999999987665                                


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                           +.++|.+..+|+.||.+|.-++.+.=|+-+|++|+++.|++.. +..||.||.++++.+||+++|.+++..
T Consensus       391 -----vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  391 -----VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             -----HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence                 4455555566666666666666666666666666666666665 566666666666666666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=1.6e-10  Score=126.74  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=32.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      ...+..|+..+|+-+|+.|+..+|.+.++|..||.+....++=..||.++++.++
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~  347 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE  347 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh
Confidence            3345555566666666666666666666666666666666666666655444444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.17  E-value=8.8e-10  Score=108.41  Aligned_cols=60  Identities=22%  Similarity=0.070  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD---SALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~---~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      +...+..++..+++++|+..|++++...|.++   .+++.+|.+|..+|++++|+..+...++
T Consensus        36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~   98 (235)
T TIGR03302        36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR   98 (235)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455666788999999999999999998765   5789999999999999999999655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.16  E-value=3e-09  Score=123.45  Aligned_cols=161  Identities=11%  Similarity=-0.041  Sum_probs=82.0

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH----HHHHHHhhHHHHHHHhHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL----LQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l----L~~~L~l~~~a~a~~~nl  139 (575)
                      +..+++++|+..|+++++.++.. ..+...+|.+|..+|++++|+.++...+......    ......+. ....-.++.
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~-~a~~~~g~~  326 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF-YSLLESENY  326 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH-HHHHhcccH
Confidence            45567788888888877765432 2244446778888888888887755543321100    00000000 000000111


Q ss_pred             HHHHHHhch-------h----hHHhhcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          140 TKMARSQGK-------K----IQITVEQEK--SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       140 a~al~sqg~-------k----~aL~L~Pd~--~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                      ..+.....+       .    ......|++  ..++..+|.++..+|++++|+..|++++...|++.. ++++|.++..+
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~  406 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            111110000       0    000112222  235556666666666666666666666666666666 66666666666


Q ss_pred             CCHHHHHHHHHHHHHHcCCCC
Q 038048          206 NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       206 Gr~eEAi~lLekALel~P~n~  226 (575)
                      |++++|+..|++++.++|++.
T Consensus       407 g~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        407 GWPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCh
Confidence            666666666666666666553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.16  E-value=2.1e-10  Score=118.00  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      .++|.++..|.|.+.+|.++|.|+.|++..+.||.+||.... +..||.+|..+|++++|+..|+++|+++|+
T Consensus       109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence            344444444444444444444444444444444444444444 444444444444444444444444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.15  E-value=2.2e-10  Score=116.26  Aligned_cols=190  Identities=18%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--HHHHHHHHhhHHHHHHHh
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--ELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--~lL~~~L~l~~~a~a~~~  137 (575)
                      .+.+....++++.|+..|++.+..++..+..+..|+.+ ...+++++|+.+....++...  ..+...+.... ....+.
T Consensus        50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~  127 (280)
T PF13429_consen   50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY-RLGDYD  127 (280)
T ss_dssp             ---------------------------------------------------------------------H-HH-HTT-HH
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHH-HHhHHH
Confidence            33455666788888888888888887777777777777 688888888887544433211  11111111000 000011


Q ss_pred             HHHHHHHHhchhhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL  214 (575)
Q Consensus       138 nla~al~sqg~k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l  214 (575)
                      .....+.     .+...  .+.++.+|..+|.++.+.|++++|+.+|++||+++|++.. ...|+.++...|++++|..+
T Consensus       128 ~~~~~l~-----~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~  202 (280)
T PF13429_consen  128 EAEELLE-----KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA  202 (280)
T ss_dssp             HHHHHHH-----HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHH-----HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            1111111     01111  2456667888888888888888888888888888888888 77888888888888888888


Q ss_pred             HHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccc
Q 038048          215 LQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTEL  256 (575)
Q Consensus       215 LekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~  256 (575)
                      +.......|.++...    .....+++..+++.-++.....+|..+
T Consensus       203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            877777766554311    122344555555555555555555554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.6e-09  Score=118.72  Aligned_cols=178  Identities=16%  Similarity=0.126  Sum_probs=130.5

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR-----------------  111 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~-----------------  111 (575)
                      ..|+..-.+.-.+..+.--+...+|..+|-|+..++|....+|...|.+|.-.|..|+|+.+|                 
T Consensus       307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl  386 (611)
T KOG1173|consen  307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL  386 (611)
T ss_pred             hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence            456665666666666666699999999999999999999999999999999999999999983                 


Q ss_pred             ------hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHH----hhc---CCcHHHHHHHHHHHH
Q 038048          112 ------SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQI----TVE---QEKSRILGNLAWAYM  170 (575)
Q Consensus       112 ------~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL----~L~---Pd~~~a~~nLG~aY~  170 (575)
                            ...++.+...+..++...+.+.-..+.++-.+...+.        +.++    .+.   +.....+.|||-+|.
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence                  3334445555555554333322222222211111111        0111    111   123457899999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++++|++|+.+|++||.+.|.+.. +..+|.+|..+|+++.|+..|.++|.++|++.
T Consensus       467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            999999999999999999999999 88999999999999999999999999999763

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.10  E-value=7.5e-10  Score=112.35  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++.++|++..+...+++++...|++++|...+....+..|+++. +..+|.+|..+|++++|+.+|++++..+|+|+
T Consensus       171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            345555555555555565555556665555555555555555555 55556666666666666666666555555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=1.5e-09  Score=108.45  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=113.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      +++...|+.+.|.+.|++|+.++|++.++++|.|-.++.+|+|++|...+..+++                         
T Consensus        77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-------------------------  131 (250)
T COG3063          77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-------------------------  131 (250)
T ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-------------------------
Confidence            5556778999999999999999999999999999999999999999998655422                         


Q ss_pred             HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                                .-.-++.+.++-|+|.+-+++|+++.|..+|+++|+++|+++. ...++..+++.|++.+|..++++...
T Consensus       132 ----------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~  201 (250)
T COG3063         132 ----------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ  201 (250)
T ss_pred             ----------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence                      1123456779999999999999999999999999999999999 99999999999999999999999877


Q ss_pred             HcC
Q 038048          221 SAG  223 (575)
Q Consensus       221 l~P  223 (575)
                      .-+
T Consensus       202 ~~~  204 (250)
T COG3063         202 RGG  204 (250)
T ss_pred             ccc
Confidence            654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.07  E-value=5.1e-10  Score=89.99  Aligned_cols=66  Identities=24%  Similarity=0.322  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-CHHHHHHHHHHHHHHcC
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-RVTEAKSLLQAVKISAG  223 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-r~eEAi~lLekALel~P  223 (575)
                      ++.+|.++|.+++.+|+|++|+.+|.+|++++|++.. ++++|.+|..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4668999999999999999999999999999999999 999999999999 79999999999999987

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.06  E-value=1e-08  Score=110.27  Aligned_cols=182  Identities=14%  Similarity=0.068  Sum_probs=110.0

Q ss_pred             hhhhhHhhcCCCCCcHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC----
Q 038048           41 GDIFHVIHKVPSGDSPY--VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR----  114 (575)
Q Consensus        41 ae~y~~~~~~ps~d~~y--arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga----  114 (575)
                      .+.|......+.....+  ..+..+++..++++.|+..+++.++.+|++..++..++.+|.+.|++++|++++...    
T Consensus       138 ~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        138 NQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            34444444433333222  245677889999999999999999999999999999999999999999999662111    


Q ss_pred             -HHHH-HH---------HHH------------HHHH----hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048          115 -IEEE-IE---------LLQ------------NKLK----NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS  159 (575)
Q Consensus       115 -LeeA-i~---------lL~------------~~L~----l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~  159 (575)
                       ++.. ..         .+.            ....    ...........++..+...|+        ...+. .+.+.
T Consensus       218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~  296 (398)
T PRK10747        218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDE  296 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCH
Confidence             1000 00         010            0000    011122233344555555554        11233 22233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+....+.+  ..+++++|++.+++.++.+|+++. ...+|.++..+|++++|..+|+++++..|++
T Consensus       297 ~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        297 RLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence            222222222  337777777777777777777777 7777777777777777777777777777654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.06  E-value=2.4e-09  Score=113.97  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.++|++..+++++|.+|..+|++++|+..|++|+.++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        29 l~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            3446666666666666666666666666666666666666666 66666666666666666666666666666543

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=1.9e-08  Score=105.93  Aligned_cols=152  Identities=12%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ....+..++|+.++.++|.++|.+..+++..+.++..+| .+++|+..+..++....+.+..-.           ..+.+
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~-----------~R~~~  115 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH-----------HRRWL  115 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH-----------HHHHH
Confidence            345678999999999999999999999999999999998 578998886554443222111111           00000


Q ss_pred             HHHhch----------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc---CCH
Q 038048          143 ARSQGK----------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM---NRV  208 (575)
Q Consensus       143 l~sqg~----------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q---Gr~  208 (575)
                      +...+.          ..++.++|.+..+|++.|+++..+|+|++|++++.++|+++|.|.. +++.+.++...   |++
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            000000          2456778888888888888888888888888888888888888887 88888777665   333


Q ss_pred             ----HHHHHHHHHHHHHcCCCC
Q 038048          209 ----TEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       209 ----eEAi~lLekALel~P~n~  226 (575)
                          ++++.+..+++.++|+|.
T Consensus       196 ~~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        196 EAMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             cccHHHHHHHHHHHHHhCCCCc
Confidence                467777778888888765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.1e-09  Score=112.81  Aligned_cols=109  Identities=20%  Similarity=0.299  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRI  161 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a  161 (575)
                      -+.+-|+-+.+.++|++|+..|..+           +.+.+.+..|+-+.+.+|...|.        +.++.++|+...+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~A-----------I~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska  151 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEA-----------IELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA  151 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH-----------HhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence            3445566666667777766664443           33344444555566666666654        4567888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      |..||.+|..+|+|++|+..|++||+|+|+|.. ..||..+-.++++..
T Consensus       152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            888888888888888888888888888888887 667766655555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=3.9e-09  Score=115.99  Aligned_cols=184  Identities=16%  Similarity=0.148  Sum_probs=116.9

Q ss_pred             hhhhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH---
Q 038048           41 GDIFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE---  116 (575)
Q Consensus        41 ae~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe---  116 (575)
                      +-.|+... +.|..-..+-+.++++...++-..|+..++++++++|++..++..||..|...|.-.+|..++.+=+.   
T Consensus       305 ~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p  384 (579)
T KOG1125|consen  305 ALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP  384 (579)
T ss_pred             HHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence            55666543 44444555666777777778888899999999999999999999999999999999999998211100   


Q ss_pred             -----------HH-------------HHHHHHHHH---hhH--HHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048          117 -----------EE-------------IELLQNKLK---NIE--EGIAFAGVKTKMARSQGK--------KIQITVEQEKS  159 (575)
Q Consensus       117 -----------eA-------------i~lL~~~L~---l~~--~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~  159 (575)
                                 +.             ..+....+.   ..+  .+......++.++...++        +.++.++|.+.
T Consensus       385 ~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~  464 (579)
T KOG1125|consen  385 KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY  464 (579)
T ss_pred             cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence                       00             000011110   000  011111112222211111        34566677777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      .+|+.||-++..-.+..||+..|++||++.|.+.. ++|||+.++.+|-|+||+.+|-.||.+.+.
T Consensus       465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            77777777777777777777777777777777776 777777777777777777777777776665

>TIGR00540 hemY_coli hemY protein

Probab=99.03  E-value=1.3e-08  Score=109.57  Aligned_cols=166  Identities=15%  Similarity=0.005  Sum_probs=114.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-----HH-H-----H--------
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-----EE-I-----E--------  120 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-----eA-i-----~--------  120 (575)
                      ...+++..++++.|...++..++..|+++.++..++.+|.++|++++|++......+     .. .     .        
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999999999999988322211     00 0     0        


Q ss_pred             --------HHHHHHHhhH----HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHH--HHHHHHHHHcCCHHHH
Q 038048          121 --------LLQNKLKNIE----EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRIL--GNLAWAYMQQNNFEMA  178 (575)
Q Consensus       121 --------lL~~~L~l~~----~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~--~nLG~aY~~qGryeEA  178 (575)
                              .+.......+    ........++..+...|+        ...+...|++....  ......+...++.+++
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~  318 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL  318 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence                    1111111111    123344455555555555        23455567766431  3334445556778888


Q ss_pred             HHHHHHHHHhCCCCH--H-HHHHHHHHHHcCCHHHHHHHHH--HHHHHcCCC
Q 038048          179 EQYYRKALSLGVDMN--K-QCNLAICLMHMNRVTEAKSLLQ--AVKISAGNR  225 (575)
Q Consensus       179 e~~yrkALeidPdn~--~-~~NLA~iy~~qGr~eEAi~lLe--kALel~P~n  225 (575)
                      +..++++++.+|+++  . ...||.++..+|++++|..+|+  .+++.+|++
T Consensus       319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence            888888888888888  6 7788888888888888888888  566676754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.01  E-value=5.4e-09  Score=111.27  Aligned_cols=51  Identities=16%  Similarity=0.192  Sum_probs=31.7

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC  201 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i  201 (575)
                      ++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++.. ...++.|
T Consensus        62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35556666666666666666666666666666666666666665 4444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.2e-08  Score=110.43  Aligned_cols=49  Identities=16%  Similarity=0.133  Sum_probs=38.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA  110 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~  110 (575)
                      ...+..+++++||.+|.+||.+.|+.+-.|.|++-+|...|+|++.++.
T Consensus       123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied  171 (606)
T KOG0547|consen  123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIED  171 (606)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHH
Confidence            4456788999999999999999988666677777777777777766655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.98  E-value=2.4e-08  Score=110.73  Aligned_cols=160  Identities=21%  Similarity=0.220  Sum_probs=113.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      .+.+++..+++++|+.+|++|+.+        +|....++.+||.+|...|+|+||..++..+++.....+.....   .
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~---~  323 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP---E  323 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH---H
Confidence            445567789999999999999864        34456689999999999999999999976666654442222221   1


Q ss_pred             HHHHHhHHHHHHHHhch--------hhHH---h--hcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 038048          132 GIAFAGVKTKMARSQGK--------KIQI---T--VEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLG------  189 (575)
Q Consensus       132 a~a~~~nla~al~sqg~--------k~aL---~--L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeid------  189 (575)
                      ....+.+++.++...++        ..++   .  ..+++   +..+.|||.+|..+|+|.||+.+|++||.+.      
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence            11223333333333333        0111   1  12333   4589999999999999999999999999885      


Q ss_pred             --CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          190 --VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       190 --Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                        +.... ..+||..|.+.+++.+|..+|..++.+.
T Consensus       404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence              22223 6789999999999999999999988875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.97  E-value=1.1e-08  Score=88.71  Aligned_cols=101  Identities=18%  Similarity=0.122  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SRILGNL  165 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nL  165 (575)
                      .+++.+|..+..+|++++|+..+...                                     +...|++   ..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l   45 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAF-------------------------------------LKKYPKSTYAPNAHYWL   45 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------HHHCCCccccHHHHHHH
Confidence            56889999999999999999985332                                     2234443   5689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          166 AWAYMQQNNFEMAEQYYRKALSLGVDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       166 G~aY~~qGryeEAe~~yrkALeidPdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |.+|...|++++|+.+|++++..+|++   .. ++++|.+|..+|++++|+.+|+++++..|++.
T Consensus        46 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        46 GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            999999999999999999999999986   34 88999999999999999999999999999764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.97  E-value=6e-09  Score=82.32  Aligned_cols=97  Identities=26%  Similarity=0.303  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      +++++|.++...|++++|+..+..                                     .+.+.|.+..+++.+|.+|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~   44 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEK-------------------------------------ALELDPDNADAYYNLAAAY   44 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHH-------------------------------------HHhcCCccHHHHHHHHHHH
Confidence            578899999999999999987433                                     2345677778999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      ..+|++++|+.+|++++.+.|.+.. +..+|.++..+|++++|..++++++...|
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            9999999999999999999999998 99999999999999999999999998776

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.96  E-value=1.1e-08  Score=118.73  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      ++...|++.. +..+|.+|..+|++++|+..|+++++++|++.. +..+|.++...|+.++|+..+++++.
T Consensus       109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            4566899999 999999999999999999999999999999999 88999999999999999999987665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=4.7e-08  Score=101.85  Aligned_cols=176  Identities=14%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh----------------
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS----------------  112 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~----------------  112 (575)
                      ........|++. .-+++..++++|+.+|...++.+|...++...||++|.+.|..|.||.+-+                
T Consensus        31 qa~~lsr~Yv~G-lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA  109 (389)
T COG2956          31 QANRLSRDYVKG-LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA  109 (389)
T ss_pred             HHhhccHHHHhH-HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            333456667765 445788899999999999999999999999999999999999999998821                


Q ss_pred             -----------cCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCc-----HHHHHHHHHH
Q 038048          113 -----------GRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEK-----SRILGNLAWA  168 (575)
Q Consensus       113 -----------gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~-----~~a~~nLG~a  168 (575)
                                 |-++.|..++....+.-.-+......+..+|....+        +..+.+.+..     +..|..|+..
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~  189 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence                       112222222221111000001111122222211111        1112222221     3356666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +....+.+.|...+.+|++.+|.... .+-||.+++..|+|+.|++.++.+++.+|+.
T Consensus       190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            66667777777777777777777766 6667777777777777777777777766654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.95  E-value=1.3e-08  Score=96.13  Aligned_cols=121  Identities=15%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      ++++..+...+...++..+..  ..+++++|.++..+|++++|+..+..++.                            
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------------------   63 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR----------------------------   63 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------
Confidence            334444555554444444433  45789999999999999999998544322                            


Q ss_pred             HhchhhHHhhcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-------HcCCHHHHHH
Q 038048          145 SQGKKIQITVEQE---KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM-------HMNRVTEAKS  213 (575)
Q Consensus       145 sqg~k~aL~L~Pd---~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~-------~qGr~eEAi~  213 (575)
                               +.++   ...+++++|.+|..+|++++|+.+|++|+.++|.+.. +.++|.+|.       .+|++++|+.
T Consensus        64 ---------l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~  134 (168)
T CHL00033         64 ---------LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA  134 (168)
T ss_pred             ---------ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence                     2222   2458999999999999999999999999999999999 999999998       7888775555


Q ss_pred             HHH-------HHHHHcCC
Q 038048          214 LLQ-------AVKISAGN  224 (575)
Q Consensus       214 lLe-------kALel~P~  224 (575)
                      .++       +++..+|.
T Consensus       135 ~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        135 WFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHHHHHHhCcc
Confidence            554       55555554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.94  E-value=8.9e-09  Score=92.42  Aligned_cols=115  Identities=13%  Similarity=0.029  Sum_probs=96.2

Q ss_pred             hhhHhhcCCCCC-cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048           43 IFHVIHKVPSGD-SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL  121 (575)
Q Consensus        43 ~y~~~~~~ps~d-~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l  121 (575)
                      .|......++.+ ..+...+..++..+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..        
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~--------   76 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYAL--------   76 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            344444443333 33445556677889999999999999999999999999999999999999999987433        


Q ss_pred             HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                                   ++.++|++...++++|.+|..+|++++|+.+|+++++++|++..
T Consensus        77 -----------------------------~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        77 -----------------------------AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             -----------------------------HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                                         24568999999999999999999999999999999999999886

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.94  E-value=8.8e-09  Score=118.33  Aligned_cols=119  Identities=12%  Similarity=0.033  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhh
Q 038048           71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKI  150 (575)
Q Consensus        71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~  150 (575)
                      .+++.-...-...-|....++.+||.+..++|+++||+.++..                                     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~-------------------------------------  111 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRG-------------------------------------  111 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHH-------------------------------------
Confidence            3333333333445677789999999999999999999998433                                     


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++.++|++..+..+++.++.+++++++|+..++++|..+|+++. ++++|.++..+|++++|+.+|++++..+|++.
T Consensus       112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence            35679999999999999999999999999999999999999999 99999999999999999999999999777653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.94  E-value=1.6e-08  Score=99.52  Aligned_cols=147  Identities=10%  Similarity=-0.049  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHC--------CCHHHHHHHHhcCHHHHHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQL--------DRSDEAIEARSGRIEEEIELLQNK  125 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qq--------GrydEAie~~~gaLeeAi~lL~~~  125 (575)
                      +...+..+...+++++|+..|+++++..|+...   +++.+|.++.+.        |++++|++.+...+......... 
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-  151 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-  151 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-
Confidence            344556778889999999999999999987654   799999999887        77888887755543321110000 


Q ss_pred             HHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHH
Q 038048          126 LKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAIC  201 (575)
Q Consensus       126 L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~i  201 (575)
                             ......+...            ..........+|.+|..+|++.+|+..|++++...|+.+   . ++++|.+
T Consensus       152 -------~~a~~~~~~~------------~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~  212 (235)
T TIGR03302       152 -------PDAKKRMDYL------------RNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA  212 (235)
T ss_pred             -------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence                   0000000000            111122456899999999999999999999999988754   5 8999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHcC
Q 038048          202 LMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       202 y~~qGr~eEAi~lLekALel~P  223 (575)
                      |..+|++++|+.+++.+....|
T Consensus       213 ~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       213 YLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCC
Confidence            9999999999999988776554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=1.4e-08  Score=108.97  Aligned_cols=165  Identities=20%  Similarity=0.209  Sum_probs=135.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC-----------------------HHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR-----------------------IEEE  118 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga-----------------------LeeA  118 (575)
                      .+.+..||+++|..+|+.||..+..-.++++|+|+.+..+|++++|++++.+.                       -..+
T Consensus       498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            34456899999999999999988888899999999999999999999983322                       1134


Q ss_pred             HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhh-H-------HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 038048          119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKI-Q-------ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV  190 (575)
Q Consensus       119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~-a-------L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP  190 (575)
                      ++.+.+...+++.+...+.+++++|...|++- +       ...-|-+....-.||.-|....-+++|+.+|++|--+.|
T Consensus       578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            44555555566667777888888887777721 1       223477777888899999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          191 DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       191 dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +... ..-+|.|+.+.|+|..|..+|+.+-...|++.
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence            9999 78899999999999999999999999999876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=2e-08  Score=101.76  Aligned_cols=131  Identities=17%  Similarity=0.159  Sum_probs=104.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ++....+...|+-+.+..+..+++...+.....+..+|......|+|.+|+..+.+                        
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk------------------------  125 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK------------------------  125 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH------------------------
Confidence            55445556677777777777777777777777777788888888888888887433                        


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                                   +..++|++..+|+-+|.+|.+.|++++|...|.+|+++.|+.+. ..|||..|.-.|+++.|..++.
T Consensus       126 -------------A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         126 -------------AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             -------------HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence                         35678888888888888888888888888888888888888888 8888888888888888888888


Q ss_pred             HHHHHcCCC
Q 038048          217 AVKISAGNR  225 (575)
Q Consensus       217 kALel~P~n  225 (575)
                      .+...-+.+
T Consensus       193 ~a~l~~~ad  201 (257)
T COG5010         193 PAYLSPAAD  201 (257)
T ss_pred             HHHhCCCCc
Confidence            887765544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.9e-08  Score=108.46  Aligned_cols=144  Identities=18%  Similarity=0.161  Sum_probs=123.1

Q ss_pred             hhhhHhhcC-CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           42 DIFHVIHKV-PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        42 e~y~~~~~~-ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      ..|....+. |.-.....-.||.++-.++-..|+..|+.|+.++|.+-.+||+||.+|.-++...=|+=++++       
T Consensus       351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk-------  423 (559)
T KOG1155|consen  351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK-------  423 (559)
T ss_pred             HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH-------
Confidence            334433333 333445556778888889999999999999999999999999999999988887777766444       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++.+.|++...|..||.+|.++++.++|+.+|.+|+....-+.. ++.||
T Consensus       424 ------------------------------A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La  473 (559)
T KOG1155|consen  424 ------------------------------ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA  473 (559)
T ss_pred             ------------------------------HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence                                          36789999999999999999999999999999999999888777 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHc
Q 038048          200 ICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       200 ~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .+|-++++..+|..+|++.++..
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999954

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.90  E-value=3e-08  Score=115.92  Aligned_cols=156  Identities=8%  Similarity=0.025  Sum_probs=109.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      ..++...+|+++.|+..|+++++.+|.+..+.+.++.++...|++++|+.+..+++..........           ..+
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l-----------lal  108 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL-----------ASA  108 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH-----------HHH
Confidence            336668899999999999999999999875555999999999999999998655542100000000           000


Q ss_pred             HHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHH
Q 038048          140 TKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEA  211 (575)
Q Consensus       140 a~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEA  211 (575)
                      +.++...|+        +.++..+|+++.++..|+.+|.+++++++|+..+++++..+|++.....++.++..+++..+|
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence            111111111        245677888888888778888888888888888888888888755554556666667777778


Q ss_pred             HHHHHHHHHHcCCCC
Q 038048          212 KSLLQAVKISAGNRQ  226 (575)
Q Consensus       212 i~lLekALel~P~n~  226 (575)
                      +..|+++++.+|++.
T Consensus       189 L~~~ekll~~~P~n~  203 (822)
T PRK14574        189 LQASSEAVRLAPTSE  203 (822)
T ss_pred             HHHHHHHHHhCCCCH
Confidence            888888888888764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2.3e-08  Score=108.45  Aligned_cols=167  Identities=16%  Similarity=0.079  Sum_probs=108.3

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048           47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL  126 (575)
Q Consensus        47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L  126 (575)
                      +...|.....|++...+++...+.++-...|.+|..++|.+++.||..|.++.-+++|++|+.-+.+++....+..-..+
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            33344444457777777777778888888888888888888888888888888888888888876665543332221111


Q ss_pred             HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 038048          127 KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD------M  192 (575)
Q Consensus       127 ~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd------n  192 (575)
                      .           ++.++..+++        .-.+..=|.-+..++..|.++..+++|++|+..|.+|+++.|.      +
T Consensus       433 Q-----------l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~  501 (606)
T KOG0547|consen  433 Q-----------LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN  501 (606)
T ss_pred             H-----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence            1           1111111111        1234445777777777778888888888888888888887777      5


Q ss_pred             HH-HHHHHHHH-HHcCCHHHHHHHHHHHHHHcCC
Q 038048          193 NK-QCNLAICL-MHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       193 ~~-~~NLA~iy-~~qGr~eEAi~lLekALel~P~  224 (575)
                      +. +.+-|.+. .=.+++.+|+.++.++++++|.
T Consensus       502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk  535 (606)
T KOG0547|consen  502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPK  535 (606)
T ss_pred             chhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence            55 55544432 2237777788888888777775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.88  E-value=4.9e-09  Score=83.55  Aligned_cols=63  Identities=22%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +.+|.+|+..|+|++|+.+|+++++.+|++.. ++.||.++..+|++++|+.+|+++++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            46899999999999999999999999999999 9999999999999999999999999999975

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=6.2e-08  Score=103.45  Aligned_cols=169  Identities=13%  Similarity=0.041  Sum_probs=130.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHH--------
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKL--------  126 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L--------  126 (575)
                      +-++.+.+..+++..|+.+-+|+|..++++-.++...|.++.+.|+.++|+-+++.+...+.   ..++..+        
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            33444556778899999999999999999988998899999999999999988655544432   1221111        


Q ss_pred             -----HhhHHHHHHHhHHHHHHHHhch-----------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048          127 -----KNIEEGIAFAGVKTKMARSQGK-----------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK  184 (575)
Q Consensus       127 -----~l~~~a~a~~~nla~al~sqg~-----------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrk  184 (575)
                           -+.......+++-++++.-.|.                 ...+.++|....+.+.++.++...|++++++.++++
T Consensus       384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence                 1111222233344444443431                 245888999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          185 ALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       185 ALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|.+.||..-+..||.++..++.+.+|..+|..||.++|++-
T Consensus       464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            999999998899999999999999999999999999999753

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.88  E-value=4.1e-08  Score=112.97  Aligned_cols=189  Identities=16%  Similarity=0.126  Sum_probs=134.9

Q ss_pred             chhhhhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           39 KKGDIFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        39 ~Rae~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      +-..+|+.+. ..|.+-..+.--..+.+..+||-.|+.+|.++|..+|... +...++|.+++++|+.+.|+..+..+++
T Consensus       148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq  227 (1018)
T KOG2002|consen  148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ  227 (1018)
T ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence            4456777544 4444444444444566788999999999999999998764 4678899999999999999999877777


Q ss_pred             HHHHHHHHHHHhhHHHH--------------------------HHHhHHHHHHHHhch-hh-------HHhh---cCCcH
Q 038048          117 EEIELLQNKLKNIEEGI--------------------------AFAGVKTKMARSQGK-KI-------QITV---EQEKS  159 (575)
Q Consensus       117 eAi~lL~~~L~l~~~a~--------------------------a~~~nla~al~sqg~-k~-------aL~L---~Pd~~  159 (575)
                      .....+...+.+....+                          .....++..+...++ ..       ++..   .+--+
T Consensus       228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a  307 (1018)
T KOG2002|consen  228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA  307 (1018)
T ss_pred             cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence            55433333322111000                          011122222222222 11       1111   23335


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      ..+|.+|..|..+|+|++|-.||.+++..+|++..  ++.||.+|+..|++++|+.+|+++++..|++..
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e  377 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE  377 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence            57999999999999999999999999999999954  899999999999999999999999999998754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=2.5e-08  Score=94.75  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC---cHHHH
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE---KSRIL  162 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd---~~~a~  162 (575)
                      ....+++++|.+|...|++++|+.++..++.                                     +.|+   ...++
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------------------------~~~~~~~~~~~~   75 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALK-------------------------------------LEEDPNDRSYIL   75 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------HhhccchHHHHH
Confidence            3456789999999999999999998554322                                     1221   24589


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcCCC
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR--------------VTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr--------------~eEAi~lLekALel~P~n  225 (575)
                      .++|.+|..+|++++|+.+|++++.+.|++.. +.++|.+|..+|+              +++|++++++++..+|++
T Consensus        76 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         76 YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999999999999999999998 9999999999988              566777777777776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=6.3e-08  Score=98.26  Aligned_cols=123  Identities=20%  Similarity=0.168  Sum_probs=110.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      .+..++..|++..|+..|+++..+.|.+..++..+|.+|.+.|++++|...|.+                          
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q--------------------------  159 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ--------------------------  159 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH--------------------------
Confidence            445568889999999999999999999999999999999999999999987544                          


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                                 ++++.|..+.+++|||..|.-.|+++.|+.++.++...-+.+.. ..||+.+...+|++++|+.+..+-
T Consensus       160 -----------Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         160 -----------ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             -----------HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence                       35678999999999999999999999999999999998888888 999999999999999999886654


Q ss_pred             H
Q 038048          219 K  219 (575)
Q Consensus       219 L  219 (575)
                      +
T Consensus       229 ~  229 (257)
T COG5010         229 L  229 (257)
T ss_pred             c
Confidence            3

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=4.2e-08  Score=101.73  Aligned_cols=72  Identities=8%  Similarity=0.049  Sum_probs=37.2

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .+.++|++..++..+|.+|..+|++++|+.+|++++...|....     +..+|.+|..+|++++|+.+|++++...
T Consensus       140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~  216 (355)
T cd05804         140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS  216 (355)
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence            34445555555555555555555555555555555555442221     2345555555555555555555554433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.83  E-value=4.6e-08  Score=96.04  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=99.2

Q ss_pred             hhhhhH-hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHCCC--HHHHHHHHhcCHH
Q 038048           41 GDIFHV-IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVM-KQLDR--SDEAIEARSGRIE  116 (575)
Q Consensus        41 ae~y~~-~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy-~qqGr--ydEAie~~~gaLe  116 (575)
                      ...+.. ....|.....+...+.++...+++++|+..|+++++++|++..++.++|.++ ...|+  +++|+.++..   
T Consensus        59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~---  135 (198)
T PRK10370         59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK---  135 (198)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH---
Confidence            344444 3445566667777888899999999999999999999999999999999975 78888  5899887433   


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          117 EEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       117 eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                                        ++.++|++..++++||.++..+|+|++|+.+|+++++++|.+..
T Consensus       136 ----------------------------------al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        136 ----------------------------------ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             ----------------------------------HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence                                              35679999999999999999999999999999999999988775

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.4e-07  Score=101.55  Aligned_cols=207  Identities=16%  Similarity=0.122  Sum_probs=133.5

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH------HHHHHHHH
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI------ELLQNKLK  127 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi------~lL~~~L~  127 (575)
                      .-.+..++......++++.|++.|.++++++ .....+.+.|-+|+..|.+.+.+..-..+++.-.      .++...+.
T Consensus       224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            3456667777778889999999999999999 7777888999999999999998876333222111      11111110


Q ss_pred             h----------hHHHHHHHhHHHHHHHH------h---ch-----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038048          128 N----------IEEGIAFAGVKTKMARS------Q---GK-----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYR  183 (575)
Q Consensus       128 l----------~~~a~a~~~nla~al~s------q---g~-----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yr  183 (575)
                      .          ...+..++.+...-++.      .   .+     .....++|+-..-.-.-|.-++..|+|.+|+.+|.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            0          00011111110000000      0   00     11234466666666677999999999999999999


Q ss_pred             HHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccccc
Q 038048          184 KALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTELEV  258 (575)
Q Consensus       184 kALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~e~  258 (575)
                      +||..+|+++. ++|.|.||.++|.+.+|+...+++++++|+...+.    ..+..+.+....+..+..++..+|...+.
T Consensus       383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99999999999 99999999999999999999999999988754211    11122222333333344445555666655


Q ss_pred             cch
Q 038048          259 GDD  261 (575)
Q Consensus       259 ~~~  261 (575)
                      .+.
T Consensus       463 ~~~  465 (539)
T KOG0548|consen  463 IDG  465 (539)
T ss_pred             HHH
Confidence            444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.79  E-value=9.6e-08  Score=91.00  Aligned_cols=98  Identities=12%  Similarity=0.003  Sum_probs=87.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      .+......|++++|+.+|+-....+|.+...+++||.++..+|+|.+|+.+|..                          
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~--------------------------   94 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGR--------------------------   94 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH--------------------------
Confidence            334556789999999999999999999999999999999999999999998644                          


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                 ++.++|+++.+++|+|.+|+..|+.+.|+..|+.|+..--+++.
T Consensus        95 -----------A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363         95 -----------AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             -----------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence                       35679999999999999999999999999999999998744443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=4.4e-07  Score=94.13  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH---HHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL---QNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL---~~~L~l~  129 (575)
                      .|+..+......++++.|...|.++....+..   .+..+..|.++...|++++|+.++...++......   .......
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~   87 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF   87 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence            34444455666778888888888877766543   34566678888888888888887655544322110   0000000


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV  208 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~  208 (575)
                      ..+ ...+....+....  .......|....++..+|.++..+|++++|+..++++++++|++.. +..+|.+|..+|++
T Consensus        88 ~~~-~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          88 GLG-DFSGMRDHVARVL--PLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             Hhc-ccccCchhHHHHH--hccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence            000 0000000000000  0012345666678889999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 038048          209 TEAKSLLQAVKISAGNR  225 (575)
Q Consensus       209 eEAi~lLekALel~P~n  225 (575)
                      ++|+.++++++...|.+
T Consensus       165 ~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         165 KEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHhhhhccCCC
Confidence            99999999999988754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.72  E-value=2.1e-07  Score=103.90  Aligned_cols=130  Identities=14%  Similarity=0.004  Sum_probs=99.5

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      +...|+.+|++|++++|+++.++..|+.+|.....+...-+   ..+..+...+...                       
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~---~~l~~a~~~~~~a-----------------------  410 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE---KQLAALSTELDNI-----------------------  410 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHh-----------------------
Confidence            47899999999999999999999999888866544432000   0000000000000                       


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                       ..+..++..+.++.-+|.++...|++++|+..|++|++++|+ .. +..+|.+|...|++++|+..|++|+.++|.++
T Consensus       411 -~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 -VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             -hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence             112236666788999999999999999999999999999995 56 99999999999999999999999999999865

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.71  E-value=6.2e-07  Score=105.07  Aligned_cols=183  Identities=11%  Similarity=0.044  Sum_probs=110.8

Q ss_pred             hhhhHhhcCCCCCcHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048           42 DIFHVIHKVPSGDSPYVR--AKHIQLIDKDPSRAVSLFWAAINAGDR------VDSALKDMAVVMKQLDRSDEAIEARSG  113 (575)
Q Consensus        42 e~y~~~~~~ps~d~~yar--A~~l~l~~kd~eeAi~lf~kAL~l~p~------~~~Al~nLA~iy~qqGrydEAie~~~g  113 (575)
                      ..|+........-+.|++  ++..++..+.|++|+.+|.+++...+.      .......|-.+|++.++|++|..+...
T Consensus       313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~  392 (822)
T PRK14574        313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN  392 (822)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            344444433333455665  444567778888888888888775421      222346777888888888888887433


Q ss_pred             CHHHHHH---HHH-----------HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048          114 RIEEEIE---LLQ-----------NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAE  179 (575)
Q Consensus       114 aLeeAi~---lL~-----------~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe  179 (575)
                      ..+....   .++           ....+.-....+.+++..+....  ...+...|.+..++..+|.++...|.+.+|+
T Consensus       393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l--e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~  470 (822)
T PRK14574        393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL--EDLSSTAPANQNLRIALASIYLARDLPRKAE  470 (822)
T ss_pred             HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            3221110   000           00000000011112222221111  2235567888888888888888888888888


Q ss_pred             HHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       180 ~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..|+.++.++|++.. ...+|.+++.+|++.+|..+.+++++..|++.
T Consensus       471 ~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        471 QELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            888888888888877 77888888888888888888888888888765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.71  E-value=2.8e-07  Score=105.70  Aligned_cols=125  Identities=12%  Similarity=0.045  Sum_probs=101.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ...+..|+.++|+.++..+|..+|.+..+|+.||.+|.++|+.++|.....-                            
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll----------------------------  198 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL----------------------------  198 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH----------------------------
Confidence            3445669999999999999999999999999999999999999999876221                            


Q ss_pred             HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                               +-.++|.+...|..++....++|++.+|.-+|.+||..+|.+.. .++.+.+|.++|++..|...|.+++.
T Consensus       199 ---------AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  199 ---------AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             ---------HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence                     12456777777777777777777777777777777777777777 77777777777777777777777777


Q ss_pred             HcC
Q 038048          221 SAG  223 (575)
Q Consensus       221 l~P  223 (575)
                      ..|
T Consensus       270 ~~p  272 (895)
T KOG2076|consen  270 LDP  272 (895)
T ss_pred             hCC
Confidence            777

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.70  E-value=2.6e-07  Score=79.96  Aligned_cols=101  Identities=14%  Similarity=0.055  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI  133 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~  133 (575)
                      ++..+..+...+++++|+..|.+++..+|+.   ..+++.+|.++...|++++|+.++...                   
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------------   65 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV-------------------   65 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH-------------------
Confidence            4455567788999999999999999988775   568999999999999999999985332                   


Q ss_pred             HHHhHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          134 AFAGVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       134 a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                        +...|++   ..+++++|.+|..+|++++|+.+|+++++..|++..
T Consensus        66 ------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        66 ------------------VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             ------------------HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence                              2334443   568999999999999999999999999999999875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.70  E-value=5.3e-08  Score=78.17  Aligned_cols=67  Identities=27%  Similarity=0.318  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA  166 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG  166 (575)
                      ++.+++.+|.++...|+|++|+.++..                                     ++.++|+++.+++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------ai~~~p~~~~~~~~~g   44 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEK-------------------------------------AIELDPNNAEAYYNLG   44 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHH-------------------------------------HHHHSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHcCCCCHHHHHHHH
Confidence            456889999999999999999998544                                     3567999999999999


Q ss_pred             HHHHHcC-CHHHHHHHHHHHHHhCC
Q 038048          167 WAYMQQN-NFEMAEQYYRKALSLGV  190 (575)
Q Consensus       167 ~aY~~qG-ryeEAe~~yrkALeidP  190 (575)
                      .+|..+| ++++|+.+|++|++++|
T Consensus        45 ~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   45 LAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHhCccHHHHHHHHHHHHHcCc
Confidence            9999999 79999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.70  E-value=1.8e-07  Score=73.76  Aligned_cols=97  Identities=21%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ...+..+...+++++|+.+|.++++..|....+++.+|.+|...|++++|+.++...                       
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------------------   60 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----------------------   60 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            444556677899999999999999999998889999999999999999999874332                       


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd  191 (575)
                                    +.+.|.+..++..+|.++..+|++++|..++.+++.+.|+
T Consensus        61 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          61 --------------LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             --------------HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence                          3446666789999999999999999999999999998874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=4.3e-07  Score=94.97  Aligned_cols=160  Identities=13%  Similarity=0.119  Sum_probs=95.6

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      +..-++|..|+..|.+.+..-|.+...+.++|.++..++++++|.++|...++......+..- -+..+ .++.+.-+++
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA-cia~~-yfY~~~PE~A  343 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA-CIAVG-YFYDNNPEMA  343 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee-eeeec-cccCCChHHH
Confidence            334456666777776666666666666666777777777777777665444331110000000 00000 0111111111


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG--VDMNK--QCNLAICLMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pdn~~--~~NLA~iy~~qGr~eEAi~lLekAL  219 (575)
                      ..+. ++++.+.-.+++.++|+|.+++..++++-++..|++|+...  |+...  |+|||.+....|++.-|..+|+-+|
T Consensus       344 lryY-RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  344 LRYY-RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             HHHH-HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence            1111 23455566677788888888888888888888888888764  44443  8888888888888888888888888


Q ss_pred             HHcCCCC
Q 038048          220 ISAGNRQ  226 (575)
Q Consensus       220 el~P~n~  226 (575)
                      ..++++.
T Consensus       423 ~~d~~h~  429 (478)
T KOG1129|consen  423 TSDAQHG  429 (478)
T ss_pred             ccCcchH
Confidence            8777654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=5.7e-07  Score=83.27  Aligned_cols=120  Identities=16%  Similarity=0.024  Sum_probs=93.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      ......+++..+...+++.+...|+.   ..+...+|.++...|++++|++.+...++.                     
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---------------------   77 (145)
T PF09976_consen   19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---------------------   77 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------------------
Confidence            33446789999999999999998887   457888999999999999999985443221                     


Q ss_pred             HHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL  214 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l  214 (575)
                                      .|++   ..+.+.||.++..+|+|++|+..++.+ .-.+-.+. ...+|.+|..+|++++|+..
T Consensus        78 ----------------~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   78 ----------------APDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                            1222   237788999999999999999999662 22222223 66799999999999999999


Q ss_pred             HHHHH
Q 038048          215 LQAVK  219 (575)
Q Consensus       215 LekAL  219 (575)
                      |+++|
T Consensus       141 y~~Al  145 (145)
T PF09976_consen  141 YQKAL  145 (145)
T ss_pred             HHHhC
Confidence            99875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.66  E-value=3.4e-07  Score=86.99  Aligned_cols=112  Identities=18%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .+...+..+...+++++|+.+|++++...++.   ..+++++|.+|...|++++|+.++..+                  
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------   98 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA------------------   98 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------
Confidence            34556666778899999999999999877653   468999999999999999999985432                  


Q ss_pred             HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 038048          133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN--------------FEMAEQYYRKALSLGVDMNKQCNL  198 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGr--------------yeEAe~~yrkALeidPdn~~~~NL  198 (575)
                                         +.+.|++..++.++|.+|..+|+              +++|++++++++.++|++.  ..+
T Consensus        99 -------------------l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~--~~~  157 (172)
T PRK02603         99 -------------------LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY--IEA  157 (172)
T ss_pred             -------------------HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH--HHH
Confidence                               34567777888889999988887              6888888889999899874  333


Q ss_pred             HHHHHHcC
Q 038048          199 AICLMHMN  206 (575)
Q Consensus       199 A~iy~~qG  206 (575)
                      +..+...|
T Consensus       158 ~~~~~~~~  165 (172)
T PRK02603        158 QNWLKTTG  165 (172)
T ss_pred             HHHHHhcC
Confidence            44444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=4.7e-07  Score=93.67  Aligned_cols=122  Identities=16%  Similarity=0.109  Sum_probs=108.2

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      .+++..+.-.+..|+.+|++..-|..||.+|+.+|++..|...|..+                                 
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A---------------------------------  182 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNA---------------------------------  182 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHH---------------------------------
Confidence            34777888888999999999999999999999999999999986543                                 


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                          +.+.|++++++.-+|.++..+   ..-.+|..+|++||.+||++.. .+-||..+..+|+|.+|+..++..++..|
T Consensus       183 ----~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         183 ----LRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             ----HHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence                567999999999999666654   3457899999999999999999 99999999999999999999999999988


Q ss_pred             CCC
Q 038048          224 NRQ  226 (575)
Q Consensus       224 ~n~  226 (575)
                      .+.
T Consensus       259 ~~~  261 (287)
T COG4235         259 ADD  261 (287)
T ss_pred             CCC
Confidence            654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.8e-07  Score=100.47  Aligned_cols=150  Identities=16%  Similarity=0.120  Sum_probs=119.0

Q ss_pred             HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHH
Q 038048           46 VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNK  125 (575)
Q Consensus        46 ~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~  125 (575)
                      .....+.-.-|+...+..+...++.+.|..+|.+|+.+.|.++-.++.+|.+....+.|.+|+.+++.+++....++...
T Consensus       372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~  451 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK  451 (611)
T ss_pred             HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence            34444555556666666677788999999999999999999999999999999999999999999888774443333332


Q ss_pred             HHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048          126 LKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC  196 (575)
Q Consensus       126 L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~  196 (575)
                      .    .....+.|++-+++..++        +.++.+.|.+..++..+|.+|..+|+++.|+.+|.+||.++|++.. .-
T Consensus       452 ~----~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~  527 (611)
T KOG1173|consen  452 I----FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE  527 (611)
T ss_pred             c----chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence            2    223456677777776666        4678999999999999999999999999999999999999999975 33


Q ss_pred             HHH
Q 038048          197 NLA  199 (575)
Q Consensus       197 NLA  199 (575)
                      -|+
T Consensus       528 lL~  530 (611)
T KOG1173|consen  528 LLK  530 (611)
T ss_pred             HHH
Confidence            333

>PRK15331 chaperone protein SicA; Provisional

Probab=98.64  E-value=4.1e-07  Score=87.27  Aligned_cols=121  Identities=17%  Similarity=0.106  Sum_probs=101.4

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      ++..+..|..|.-+.++|++++|+.+++-                                     +...++.+.+.+..
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~-------------------------------------L~~~d~~n~~Y~~G   76 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRF-------------------------------------LCIYDFYNPDYTMG   76 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------------HHHhCcCcHHHHHH
Confidence            33456789999999999999999998422                                     24468888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT  243 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~  243 (575)
                      ||.++..+++|++|+..|--|..++++++. .+..|.||+.+|+.++|+.+|+.+++ +|.+      ..-.++|+.+|.
T Consensus        77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~------~~l~~~A~~~L~  149 (165)
T PRK15331         77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED------ESLRAKALVYLE  149 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch------HHHHHHHHHHHH
Confidence            999999999999999999999999999999 99999999999999999999999999 3432      233467777777


Q ss_pred             Hhcccc
Q 038048          244 ELESPS  249 (575)
Q Consensus       244 ele~al  249 (575)
                      .+....
T Consensus       150 ~l~~~~  155 (165)
T PRK15331        150 ALKTAE  155 (165)
T ss_pred             HHHccc
Confidence            655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.62  E-value=1.2e-07  Score=75.46  Aligned_cols=65  Identities=26%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                      +.+|.++.+.|++++|+.++..                                     ++...|++..+++.+|.++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~-------------------------------------~l~~~P~~~~a~~~lg~~~~~   43 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQ-------------------------------------ALKQDPDNPEAWYLLGRILYQ   43 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHH-------------------------------------HHCCSTTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHHHHHHHHHH
Confidence            4689999999999999998533                                     356789999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH
Q 038048          172 QNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       172 qGryeEAe~~yrkALeidPdn~  193 (575)
                      +|++++|+.+|+++++++|+++
T Consensus        44 ~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   44 QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCcCCC
Confidence            9999999999999999999985

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=1.7e-06  Score=94.17  Aligned_cols=125  Identities=17%  Similarity=0.074  Sum_probs=113.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ......+++++|+..++..+...|+++..+-..+.++...|+.++|++.+.+                            
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k----------------------------  365 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKK----------------------------  365 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----------------------------
Confidence            4556788999999999999999999999999999999999999999998433                            


Q ss_pred             HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                               ++.++|+..-...++|.+|++.|++.+|+..+.+.+.-+|+++. |.-||.+|..+|+..+|...+-+.+.
T Consensus       366 ---------al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         366 ---------ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             ---------HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence                     35678998889999999999999999999999999999999999 99999999999999999888888777


Q ss_pred             HcC
Q 038048          221 SAG  223 (575)
Q Consensus       221 l~P  223 (575)
                      ...
T Consensus       437 ~~G  439 (484)
T COG4783         437 LAG  439 (484)
T ss_pred             hCC
Confidence            654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.60  E-value=9.1e-07  Score=83.52  Aligned_cols=103  Identities=16%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      ..+...+......+++++|+.+|++++.+.++.   ..+++++|.+|...|++++|+.++..+                 
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-----------------   98 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-----------------   98 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence            344556677778899999999999999887653   458999999999999999999985443                 


Q ss_pred             HHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 038048          132 GIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM-------QQNNFE-------MAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       132 a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~-------~qGrye-------EAe~~yrkALeidPdn~~  194 (575)
                                          +.++|.....+.++|.+|.       .+|+++       +|+.+|++++..+|++..
T Consensus        99 --------------------l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033         99 --------------------LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             --------------------HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence                                2334555555566665555       778876       666666677778887663

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.59  E-value=5.3e-07  Score=105.57  Aligned_cols=141  Identities=14%  Similarity=0.052  Sum_probs=110.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH-HHhH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA-FAGV  138 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a-~~~n  138 (575)
                      ....+...+++++|+...+.++...|+...+++.+|.+|.+.+++++|.-.  +.+..    +....+  ..... ++..
T Consensus        37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----~~~~~~--~~~ve~~~~~  108 (906)
T PRK14720         37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----FSQNLK--WAIVEHICDK  108 (906)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----cccccc--hhHHHHHHHH
Confidence            334445688999999999999999999999999999999999999998876  21111    000000  00001 1111


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                                   +.-.+++..+++.||.+|.++|++++|...|+++|+++|+|+. +.|+|..|... ++++|+.++.+
T Consensus       109 -------------i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720        109 -------------ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             -------------HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence                         1224455569999999999999999999999999999999999 99999999999 99999999999


Q ss_pred             HHHHc
Q 038048          218 VKISA  222 (575)
Q Consensus       218 ALel~  222 (575)
                      |+...
T Consensus       175 AV~~~  179 (906)
T PRK14720        175 AIYRF  179 (906)
T ss_pred             HHHHH
Confidence            99864

>PLN02789 farnesyltranstransferase

Probab=98.59  E-value=2.2e-06  Score=90.47  Aligned_cols=148  Identities=8%  Similarity=0.028  Sum_probs=110.9

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH--HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRS--DEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGry--dEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .++++|+.++.+++..+|++..++++.+.++...|+.  ++++++...+++..           +.....+...+-++..
T Consensus        86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-----------pkNy~AW~~R~w~l~~  154 (320)
T PLN02789         86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-----------AKNYHAWSHRQWVLRT  154 (320)
T ss_pred             hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----------cccHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999874  45555543333322           2222222222222222


Q ss_pred             hch--------hhHHhhcCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----c
Q 038048          146 QGK--------KIQITVEQEKSRILGNLAWAYMQQ---NNF----EMAEQYYRKALSLGVDMNK-QCNLAICLMH----M  205 (575)
Q Consensus       146 qg~--------k~aL~L~Pd~~~a~~nLG~aY~~q---Gry----eEAe~~yrkALeidPdn~~-~~NLA~iy~~----q  205 (575)
                      .+.        ..+|.++|.+..+|++.|.++..+   |.+    ++++.+..++|.++|+|.. ++.++.+|..    .
T Consensus       155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l  234 (320)
T PLN02789        155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL  234 (320)
T ss_pred             hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence            222        356888999999999999998876   333    5788899999999999999 9999999988    5


Q ss_pred             CCHHHHHHHHHHHHHHcCCCC
Q 038048          206 NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       206 Gr~eEAi~lLekALel~P~n~  226 (575)
                      ++..+|+..+.+++...+...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~s~  255 (320)
T PLN02789        235 VSDPEVSSVCLEVLSKDSNHV  255 (320)
T ss_pred             ccchhHHHHHHHhhcccCCcH
Confidence            667889999999888766543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.57  E-value=1e-07  Score=78.54  Aligned_cols=66  Identities=26%  Similarity=0.338  Sum_probs=56.3

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---V-DM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---P-dn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      +-..+++++|.+|..+|+|++|+.+|++|+++.   + ++   .. +.|||.+|..+|++++|+.++++++++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            345689999999999999999999999999772   2 22   23 7899999999999999999999999874

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=2.2e-07  Score=101.09  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      ..+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++.   . ++|+|.+|..+|++++|+.+|++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999999999999999999999998   3 8999999999999999999999999973

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=5.4e-06  Score=86.77  Aligned_cols=182  Identities=13%  Similarity=0.108  Sum_probs=124.8

Q ss_pred             hhhhhHhhcCCC-CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048           41 GDIFHVIHKVPS-GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGR  114 (575)
Q Consensus        41 ae~y~~~~~~ps-~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~ga  114 (575)
                      .+.|--+...++ .-....-.+.++...|..|.||..-+..+.. |+.     .-+++.||.-|+..|=+|.|+.++..-
T Consensus        55 vdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L  133 (389)
T COG2956          55 VDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL  133 (389)
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            444544333333 3333444667778888999999888665543 433     247888999999999999999885444


Q ss_pred             HHH---HHHHHHHHHHhhHHHHH--------------------------HHhHHHHHHHHhch--------hhHHhhcCC
Q 038048          115 IEE---EIELLQNKLKNIEEGIA--------------------------FAGVKTKMARSQGK--------KIQITVEQE  157 (575)
Q Consensus       115 Lee---Ai~lL~~~L~l~~~a~a--------------------------~~~nla~al~sqg~--------k~aL~L~Pd  157 (575)
                      .++   +...+++.+. +|+...                          ++=.++..+....+        ++++..+|.
T Consensus       134 ~de~efa~~AlqqLl~-IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~  212 (389)
T COG2956         134 VDEGEFAEGALQQLLN-IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK  212 (389)
T ss_pred             hcchhhhHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence            331   1222222111 011111                          11111111111111        356778999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ...+-..||.++...|+|+.|+..++.+++.+|+...  .-.|..+|..+|+.++.+..+.++.+..+.
T Consensus       213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999998  667999999999999999999999998774

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.56  E-value=8.6e-07  Score=91.13  Aligned_cols=101  Identities=13%  Similarity=0.093  Sum_probs=85.3

Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HHHHHH
Q 038048           89 SALKDMAVVM-KQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SRILGN  164 (575)
Q Consensus        89 ~Al~nLA~iy-~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~n  164 (575)
                      ...|..|..+ ++.|+|++|+..+...                                     +...|+.   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~f-------------------------------------l~~yP~s~~a~~A~y~  185 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNF-------------------------------------VKKYPDSTYQPNANYW  185 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------------------------HHHCcCCcchHHHHHH
Confidence            5677777776 6679999999874331                                     3345655   579999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ||.+|+.+|+|++|+..|++++..+|+++   . ++.+|.+|..+|++++|+.+|+++++..|+..
T Consensus       186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999999999999865   3 88999999999999999999999999999754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.56  E-value=3.4e-06  Score=97.67  Aligned_cols=170  Identities=13%  Similarity=0.092  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhcCH--------------------
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSGRI--------------------  115 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~gaL--------------------  115 (575)
                      |+..++.+-..||+++|-.+|.++++.++++ .-.+++||.+|+..|++++|+.++...+                    
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            3344444455677777777777777777666 4566777777777777777776622221                    


Q ss_pred             -------HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch-------hhHH-----hhcCCcHHHHHHHHHHHHHcCCHH
Q 038048          116 -------EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK-------KIQI-----TVEQEKSRILGNLAWAYMQQNNFE  176 (575)
Q Consensus       116 -------eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~-------k~aL-----~L~Pd~~~a~~nLG~aY~~qGrye  176 (575)
                             +.+..+++..+...+.+...+-.++.++.....       ..++     ...+=++..++|+|..++.+|++.
T Consensus       390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~  469 (1018)
T KOG2002|consen  390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE  469 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence                   233334444443222222223333333222111       0111     113456679999999999999999


Q ss_pred             HHHHHHHHHHHh-----CCCC-----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          177 MAEQYYRKALSL-----GVDM-----NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       177 EAe~~yrkALei-----dPdn-----~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|...|.+|+..     +++.     .. .||||.++-..++++.|..+|..+++.+|...
T Consensus       470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI  530 (1018)
T KOG2002|consen  470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI  530 (1018)
T ss_pred             HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence            999999999987     3333     23 78999999999999999999999999998653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.54  E-value=4.4e-07  Score=76.19  Aligned_cols=43  Identities=19%  Similarity=0.185  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHHHHH
Q 038048           68 KDPSRAVSLFWAAINAGDR--VDSALKDMAVVMKQLDRSDEAIEA  110 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~--~~~Al~nLA~iy~qqGrydEAie~  110 (575)
                      ++++.|+.+|++++...|.  +...++.||.+|.++|+|++|+.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~   47 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL   47 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4566666666666665553  233455556666666666666655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.54  E-value=6.8e-06  Score=88.59  Aligned_cols=167  Identities=14%  Similarity=0.103  Sum_probs=110.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCCHHHHHHHHhc-----------------------
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSAL-KDMAVVMKQLDRSDEAIEARSG-----------------------  113 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al-~nLA~iy~qqGrydEAie~~~g-----------------------  113 (575)
                      .-+.......|+++.|..+|.++.+.+|+...+. ...+.++...|++++|+..+..                       
T Consensus       122 llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g  201 (398)
T PRK10747        122 LLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            3345556788999999999999999988875433 3448999999999999998333                       


Q ss_pred             CHHHHHHHHHHHHHhh---HHHH------HHHhHHHHHHHHhchh-------hHHhhcCCcHHHHHHHHHHHHHcCCHHH
Q 038048          114 RIEEEIELLQNKLKNI---EEGI------AFAGVKTKMARSQGKK-------IQITVEQEKSRILGNLAWAYMQQNNFEM  177 (575)
Q Consensus       114 aLeeAi~lL~~~L~l~---~~a~------a~~~nla~al~sqg~k-------~aL~L~Pd~~~a~~nLG~aY~~qGryeE  177 (575)
                      .++.+..++....+..   ....      .+...........+..       ......|+++.++..+|..+...|+.++
T Consensus       202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~  281 (398)
T PRK10747        202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT  281 (398)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence            3333333333333210   0000      0011111111111110       1112346788899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          178 AEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       178 Ae~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      |+..++++++..| +.. ..-++.+  ..++.+++++.+++.++.+|+++.
T Consensus       282 A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~  329 (398)
T PRK10747        282 AQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPL  329 (398)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHH
Confidence            9999999999544 443 3333333  459999999999999999998863

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.53  E-value=1.9e-07  Score=78.38  Aligned_cols=60  Identities=33%  Similarity=0.425  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                      +..++++||.+|+++|+|++|+.++++ +.++|.+.. .+-+|.+|..+|++++|+.+|+++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            455788899999999999999999999 889998888 888899999999999999999875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.53  E-value=1e-06  Score=99.79  Aligned_cols=130  Identities=16%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      +.......+..++|......|-.+.+-....|+..|.++..+|++.||.+.|..                          
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~--------------------------  709 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV--------------------------  709 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH--------------------------
Confidence            334455667888998888889899999999999999999999999999998533                          


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQ--YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~--~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                                 ++.++|++..++..||.+|.+.|+..-|+.  ++..|++++|.|.+ |++||.++..+|+.++|..+|+
T Consensus       710 -----------Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  710 -----------ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             -----------HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence                       357899999999999999999999999999  99999999999999 9999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 038048          217 AVKISAGNRQ  226 (575)
Q Consensus       217 kALel~P~n~  226 (575)
                      .++++.+.++
T Consensus       779 aa~qLe~S~P  788 (799)
T KOG4162|consen  779 AALQLEESNP  788 (799)
T ss_pred             HHHhhccCCC
Confidence            9999988765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.53  E-value=3.1e-07  Score=98.23  Aligned_cols=179  Identities=17%  Similarity=0.171  Sum_probs=127.6

Q ss_pred             hhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHH---------
Q 038048           44 FHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEA---------  110 (575)
Q Consensus        44 y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~---------  110 (575)
                      ||+....+..-..++..+.-....+|....+.+|++||+.+..+.    .+|..||++|.-+++|++|+++         
T Consensus         7 ~h~~~~q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar   86 (639)
T KOG1130|consen    7 FHVRYMQDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR   86 (639)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH
Confidence            666655555556666666667788899999999999999887653    4577899999999999999988         


Q ss_pred             --------------------HhcCHHHHHHHHHHHHHhhHH------HHHHHhHHHHHHHHhch----------------
Q 038048          111 --------------------RSGRIEEEIELLQNKLKNIEE------GIAFAGVKTKMARSQGK----------------  148 (575)
Q Consensus       111 --------------------~~gaLeeAi~lL~~~L~l~~~------a~a~~~nla~al~sqg~----------------  148 (575)
                                          ..+++++++....+.+.+..+      ....+.|++..|...|+                
T Consensus        87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e  166 (639)
T KOG1130|consen   87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE  166 (639)
T ss_pred             HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence                                345556665444444432111      11235677777766665                


Q ss_pred             -----hh-------HHhh--cCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 038048          149 -----KI-------QITV--EQE----KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAICLM  203 (575)
Q Consensus       149 -----k~-------aL~L--~Pd----~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-------~~NLA~iy~  203 (575)
                           ..       -+.+  +-.    ...++.|||.+|+-+|+|++|+..-+.-|.|...+-.       +.|||++++
T Consensus       167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi  246 (639)
T KOG1130|consen  167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI  246 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence                 00       0111  111    1238899999999999999999999998888655442       569999999


Q ss_pred             HcCCHHHHHHHHHHHHHHc
Q 038048          204 HMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~  222 (575)
                      -.|+++.|+++|++++.+-
T Consensus       247 flg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  247 FLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             hhcccHhHHHHHHHHHHHH
Confidence            9999999999999987753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=5.4e-06  Score=84.34  Aligned_cols=157  Identities=15%  Similarity=0.048  Sum_probs=122.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      +..+.++..+..+-|...+.+....-|++......-|..+...|++++|+++|..-+++.+           .+..++.+
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-----------t~~v~~KR  125 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-----------TDTVIRKR  125 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-----------chhHHHHH
Confidence            4555667778889999999887777788888877889999999999999999766555432           12222223


Q ss_pred             HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC---
Q 038048          139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN---  206 (575)
Q Consensus       139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG---  206 (575)
                      ...++..+|+        ...+..-+.+.++|..|+.+|...|+|++|.-+|++.+-+.|-++. ...||.++..+|   
T Consensus       126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            3333444444        1235556888999999999999999999999999999999999999 888999988776   


Q ss_pred             CHHHHHHHHHHHHHHcCCCC
Q 038048          207 RVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n~  226 (575)
                      ++.-|.++|.++++++|.+.
T Consensus       206 N~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  206 NLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHHHHhChHhH
Confidence            45679999999999999654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.51  E-value=2.4e-07  Score=74.05  Aligned_cols=57  Identities=23%  Similarity=0.336  Sum_probs=53.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +++.|+|++|+.+|++++..+|++.. ++.||.+|..+|++++|..++++++..+|++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            46889999999999999999999999 9999999999999999999999999999864

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.1e-06  Score=94.04  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=131.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH-HhhHHHHHHHhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL-KNIEEGIAFAGVKTKM  142 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L-~l~~~a~a~~~nla~a  142 (575)
                      ..+.+++++|...--..+++++.+.++++--|.++...++.+.|+..+++.+........... .........+.+.+..
T Consensus       179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            466789999999998999999999999999999999999999999998887765443222111 0111111111222222


Q ss_pred             HHHhch--------hhHHhhcCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          143 ARSQGK--------KIQITVEQEKSR----ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       143 l~sqg~--------k~aL~L~Pd~~~----a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      +...|.        ..+|.++|++..    .|.|+|.+...+|+..+|+..-..|+.|+|.... +...|.|++.+++|+
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            222222        346888887643    7899999999999999999999999999999999 889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHh
Q 038048          210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL  245 (575)
Q Consensus       210 EAi~lLekALel~P~n~~~~~~l~slerA~elL~el  245 (575)
                      +|++.|+++++...+ .   ..-.++.+|+..|+..
T Consensus       339 ~AV~d~~~a~q~~~s-~---e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD-C---EIRRTLREAQLALKKS  370 (486)
T ss_pred             HHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHh
Confidence            999999999998654 2   2235666777776643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.50  E-value=5.1e-06  Score=87.55  Aligned_cols=183  Identities=13%  Similarity=0.102  Sum_probs=127.6

Q ss_pred             hhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--
Q 038048           43 IFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--  119 (575)
Q Consensus        43 ~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--  119 (575)
                      .||... ..|...-.+++-+.+++..|.-.-|+.-+.++|++.|++..|....|.+++++|++++|+.-+...+....  
T Consensus        60 ~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen   60 HYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            455433 33333444555556667777777778888888888888877887888888888888888877544443211  


Q ss_pred             -HHHHHHHH--hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          120 -ELLQNKLK--NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       120 -~lL~~~L~--l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                       ...+..-+  .+.........+. .+...|+        ..++++.|=+...+...+.+|...|....|+.-++.|-++
T Consensus       140 ~~~~eaqskl~~~~e~~~l~~ql~-s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL  218 (504)
T KOG0624|consen  140 GLVLEAQSKLALIQEHWVLVQQLK-SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL  218 (504)
T ss_pred             chhHHHHHHHHhHHHHHHHHHHHH-HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence             11111000  1100001111111 1111112        3467888989999999999999999999999999999999


Q ss_pred             CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          189 GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       189 dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..|+-+ ++.++.+|...|+.+.++...+..|+++|++.
T Consensus       219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            999999 99999999999999999999999999999864

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.4e-06  Score=88.43  Aligned_cols=212  Identities=11%  Similarity=0.071  Sum_probs=130.2

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH------------------
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA------------------  110 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~------------------  110 (575)
                      ..+...-.+...+.+..+.||.++|+..|+++.-++|....++--.|.++.+.|++++-..+                  
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            33444444455666778889999999999999999998888877778888888888876655                  


Q ss_pred             -----HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCH--
Q 038048          111 -----RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNF--  175 (575)
Q Consensus       111 -----~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGry--  175 (575)
                           +.+.++.+.....+.++.-+.....+--.+.++...++        +.++.+.|...+.|-.|--.|+..|++  
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence                 22333333333333332111111111111111111111        123334444444444444444444444  


Q ss_pred             ----------------------------------HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          176 ----------------------------------EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       176 ----------------------------------eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                                                        ++|..+|+++|.+.|+... ...+|.++...|++++++.+++++|.
T Consensus       387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~  466 (564)
T KOG1174|consen  387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI  466 (564)
T ss_pred             HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence                                              4556777778888888888 77889999999999999999999999


Q ss_pred             HcCCCCCChhHH----HHHHHHHHHHHHhccccccCcccccccch
Q 038048          221 SAGNRQMDTSYS----RSFERAIQMLTELESPSVLKLTELEVGDD  261 (575)
Q Consensus       221 l~P~n~~~~~~l----~slerA~elL~ele~al~~~p~~~e~~~~  261 (575)
                      ..+++. -..++    ...+..++.+..+..++.++|..+....-
T Consensus       467 ~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G  510 (564)
T KOG1174|consen  467 IFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG  510 (564)
T ss_pred             hccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence            988753 11222    23344566666777888889988855433

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=2.6e-06  Score=93.01  Aligned_cols=136  Identities=16%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHC---CCHH--HHHHHHhcCHHHHHHHHHH
Q 038048           56 PYVRAKHIQLIDK---DPSRAVSLFWAAI---NAGDRVDSALKDMAVVMKQL---DRSD--EAIEARSGRIEEEIELLQN  124 (575)
Q Consensus        56 ~yarA~~l~l~~k---d~eeAi~lf~kAL---~l~p~~~~Al~nLA~iy~qq---Gryd--EAie~~~gaLeeAi~lL~~  124 (575)
                      .|.++... +.++   +.+.|+.+|.+|+   .++|....+|..+|.++...   |-.+  .+...       +....  
T Consensus       258 ~ylrg~~~-~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~-------a~~~A--  327 (458)
T PRK11906        258 EMLAGKKE-LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK-------ALELL--  327 (458)
T ss_pred             HHHHHHHH-hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH-------HHHHH--
Confidence            35555433 3333   4577899999999   99999999999999998765   1111  11110       00000  


Q ss_pred             HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048          125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM  203 (575)
Q Consensus       125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~  203 (575)
                                              .++++++|.++.++..+|.++...++++.|+..|++|+.++|+.+. ++-+|.++.
T Consensus       328 ------------------------~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        328 ------------------------DYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             ------------------------HHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence                                    2468899999999999999999999999999999999999999999 999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHcCCC
Q 038048          204 HMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P~n  225 (575)
                      ..|+.++|...++++++++|.-
T Consensus       384 ~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        384 HNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HcCCHHHHHHHHHHHhccCchh
Confidence            9999999999999999999953

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.46  E-value=1.5e-06  Score=79.49  Aligned_cols=97  Identities=24%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh-cCCcHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV-EQEKSRILGNLAW  167 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L-~Pd~~~a~~nLG~  167 (575)
                      .++|.+|.++..+|+.++|+.+|..+++.                                   -+ .+.-..++..+|.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------------------------gL~~~~~~~a~i~las   46 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----------------------------------GLSGADRRRALIQLAS   46 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------CCCchHHHHHHHHHHH
Confidence            46789999999999999999997765431                                   01 1222348899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVD---MNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPd---n~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      +|..+|++++|+..+++++.-.|+   +.. .+.++.++..+|+.+||+..+-.++.
T Consensus        47 tlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   47 TLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998   666 88899999999999999999988886

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.45  E-value=1.7e-05  Score=91.37  Aligned_cols=72  Identities=19%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT  229 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~  229 (575)
                      ....++.++.+|...|+|.+|+.+|-.++...+.+..  |+++|.||+.+|.+++|+.+|+++|.+.|++..+.
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence            4568999999999999999999999999999887775  99999999999999999999999999999987544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=6.4e-06  Score=90.58  Aligned_cols=178  Identities=17%  Similarity=0.176  Sum_probs=122.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH--H------HHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE--L------LQNKL  126 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~--l------L~~~L  126 (575)
                      .+++-.+.+.+.+....++++.+-..       ..++..+|..|...++++.|+.++.+++.+...  +      .++.+
T Consensus       265 A~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~  344 (539)
T KOG0548|consen  265 AVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL  344 (539)
T ss_pred             HHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence            33444555555555555666554332       234555788999999999999998777664321  1      11111


Q ss_pred             H----hhH---HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048          127 K----NIE---EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       127 ~----l~~---~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd  191 (575)
                      +    ..+   ....-....+..+...|+        ..+|..+|+++.+|.|.|.+|..+|.+..|+...+.+++++|+
T Consensus       345 k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  345 KEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             HHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence            1    110   000011111222222222        2468889999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 038048          192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQML  242 (575)
Q Consensus       192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL  242 (575)
                      +.. +..-|.++..+.+|++|...|+++++.+|++.   .....+.++.++.
T Consensus       425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~---e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA---EAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHh
Confidence            999 99999999999999999999999999998754   3444555555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=7.2e-07  Score=72.23  Aligned_cols=62  Identities=27%  Similarity=0.319  Sum_probs=58.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |..+|...++|++|+.++++++.++|+++. +..+|.+|..+|++++|+..|+++++..|++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            467899999999999999999999999999 99999999999999999999999999999764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1e-06  Score=94.39  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=105.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc-----------------------CHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG-----------------------RIEEEIEL  121 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g-----------------------aLeeAi~l  121 (575)
                      .-.++|.+|+..|..||.+.|++...|.+-|.+|+..|+|++|+...+.                       .+.++...
T Consensus        60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~  139 (486)
T KOG0550|consen   60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK  139 (486)
T ss_pred             HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence            4456899999999999999999999999999999999999999866111                       11111111


Q ss_pred             HHHHH--------H----hhHHH----------------HHHHhHH-----------------HHHHHHhch--------
Q 038048          122 LQNKL--------K----NIEEG----------------IAFAGVK-----------------TKMARSQGK--------  148 (575)
Q Consensus       122 L~~~L--------~----l~~~a----------------~a~~~nl-----------------a~al~sqg~--------  148 (575)
                      ++...        .    +++..                +.+.+..                 ..++.-.|.        
T Consensus       140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~  219 (486)
T KOG0550|consen  140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA  219 (486)
T ss_pred             hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence            11000        0    00000                0000000                 000000000        


Q ss_pred             -------hhHHhhcCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH
Q 038048          149 -------KIQITVEQEKSR------------ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMH  204 (575)
Q Consensus       149 -------k~aL~L~Pd~~~------------a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~  204 (575)
                             ...+.++|+...            .+-.-|.-.++.|+|.+|..+|..||.|+|++..     ++|+|.++..
T Consensus       220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r  299 (486)
T KOG0550|consen  220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR  299 (486)
T ss_pred             HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence                   223555555433            4456677788889999999999999999998774     6688999999


Q ss_pred             cCCHHHHHHHHHHHHHHcCCCC
Q 038048          205 MNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       205 qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|+..||+.-++.++.+++...
T Consensus       300 Lgrl~eaisdc~~Al~iD~syi  321 (486)
T KOG0550|consen  300 LGRLREAISDCNEALKIDSSYI  321 (486)
T ss_pred             cCCchhhhhhhhhhhhcCHHHH
Confidence            9999999999999999877543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.42  E-value=5.9e-07  Score=73.94  Aligned_cols=74  Identities=28%  Similarity=0.440  Sum_probs=56.3

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL  165 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL  165 (575)
                      ....+++++|.+|..+|+|++|++++.++++. ...++..                             .++...++++|
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-----------------------------~~~~a~~~~~l   52 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-----------------------------HPDTANTLNNL   52 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-----------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-----------------------------CHHHHHHHHHH
Confidence            34568899999999999999999997665543 2222111                             12224589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          166 AWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       166 G~aY~~qGryeEAe~~yrkALeid  189 (575)
                      |.+|..+|++++|+.+|++|+++.
T Consensus        53 g~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   53 GECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999999999999999873

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4.7e-06  Score=89.26  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      ...-|+.|++.|+|..|+..|..++    ..+...-......    ....              ..--..+++||+.+|.
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav----~~l~~~~~~~~ee----~~~~--------------~~~k~~~~lNlA~c~l  268 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAV----SFLEYRRSFDEEE----QKKA--------------EALKLACHLNLAACYL  268 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHH----HHhhccccCCHHH----HHHH--------------HHHHHHHhhHHHHHHH
Confidence            3456999999999999998865532    2222111000000    0000              0011238899999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++++|.+|+.+-.++|+++|+|.. ++.-|.+|+.+|+|+.|+..|++++++.|+|-
T Consensus       269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk  325 (397)
T KOG0543|consen  269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK  325 (397)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999999999999 99999999999999999999999999999885

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=2.8e-06  Score=88.98  Aligned_cols=148  Identities=17%  Similarity=0.271  Sum_probs=107.5

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      ++.-+.+.+|++.|+.+|+..|- ++.+..|+.+|....+...|+..+...++.-.           .+..+.-..+..+
T Consensus       233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP-----------~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-----------FDVTYLLGQARIH  300 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-----------chhhhhhhhHHHH
Confidence            34456677777777777776554 44556677777777777777776544443221           1111111111111


Q ss_pred             HHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048          144 RSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL  214 (575)
Q Consensus       144 ~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l  214 (575)
                      ...++        +..+.++|.+.++.-.+|..|+--++.+-|+.+|++.|..--.+++ .+|+|.|.+..++++-++..
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence            11111        3467788999999899999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHcC
Q 038048          215 LQAVKISAG  223 (575)
Q Consensus       215 LekALel~P  223 (575)
                      |++++..-.
T Consensus       381 f~RAlstat  389 (478)
T KOG1129|consen  381 FQRALSTAT  389 (478)
T ss_pred             HHHHHhhcc
Confidence            999999754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.37  E-value=4.6e-06  Score=85.81  Aligned_cols=105  Identities=9%  Similarity=0.022  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .|..+..+.+..+++++|+..|++.+...|+.   +.+++.||.+|...|++++|+..+...+..               
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---------------  209 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---------------  209 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence            34444444455789999999999999999987   479999999999999999999885442110               


Q ss_pred             HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                         --.+|..+.+++.+|.+|..+|++++|+.+|+++++..|+...
T Consensus       210 -------------------yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        210 -------------------YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             -------------------CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence                               0113445679999999999999999999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.37  E-value=3.4e-05  Score=82.46  Aligned_cols=183  Identities=15%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             chhhhhhHhhcCCCCCcHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-----
Q 038048           39 KKGDIFHVIHKVPSGDSPYVR---AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA-----  110 (575)
Q Consensus        39 ~Rae~y~~~~~~ps~d~~yar---A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~-----  110 (575)
                      .+++.|-..-..+.++..+..   -..+++.++|+..|..-..+++...|.++.++.-...+|...|+|++...+     
T Consensus       135 ~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~  214 (400)
T COG3071         135 DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR  214 (400)
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            455666654444444443332   224567889999999999999999999999999999999999999999988     


Q ss_pred             HhcCH--------HH-H-HHHHHHHH------------HhhHHH----HH-----------------HHhHHHHHHHHhc
Q 038048          111 RSGRI--------EE-E-IELLQNKL------------KNIEEG----IA-----------------FAGVKTKMARSQG  147 (575)
Q Consensus       111 ~~gaL--------ee-A-i~lL~~~L------------~l~~~a----~a-----------------~~~nla~al~sqg  147 (575)
                      ..+.+        +. + ..+++...            +..+..    ..                 ...-+.+++..+.
T Consensus       215 ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~  294 (400)
T COG3071         215 KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW  294 (400)
T ss_pred             HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            11111        00 0 01111111            000000    00                 0001111111111


Q ss_pred             h----------------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 038048          148 K----------------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHM  205 (575)
Q Consensus       148 ~----------------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~q  205 (575)
                      +                      ++.+...|+++.++..||.+|++.+.|.+|..+|+.|++..|+...+.-||.+|..+
T Consensus       295 D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~  374 (400)
T COG3071         295 DPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL  374 (400)
T ss_pred             ChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence            1                      223555788889999999999999999999999999999999988888999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 038048          206 NRVTEAKSLLQAVKIS  221 (575)
Q Consensus       206 Gr~eEAi~lLekALel  221 (575)
                      |+..+|.+++++++..
T Consensus       375 g~~~~A~~~r~e~L~~  390 (400)
T COG3071         375 GEPEEAEQVRREALLL  390 (400)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998864

>TIGR00540 hemY_coli hemY protein

Probab=98.33  E-value=1.2e-05  Score=86.80  Aligned_cols=125  Identities=10%  Similarity=0.037  Sum_probs=92.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +.+.+..||++.|.+.+.++.+..|.....+...|.++.++|++++|..++..+.                         
T Consensus        91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~-------------------------  145 (409)
T TIGR00540        91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA-------------------------  145 (409)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------------
Confidence            4566889999999999999999888877677778999999999999999854422                         


Q ss_pred             HHHHHhchhhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          141 KMARSQGKKIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                                  ...|++. .+....+.++...|++++|...++++++..|+++. +.-++.+|..+|++++|+.++.++
T Consensus       146 ------------~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l  213 (409)
T TIGR00540       146 ------------ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM  213 (409)
T ss_pred             ------------HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                        1233332 23444567777777777777777777777777777 667777777777777777777777


Q ss_pred             HHHc
Q 038048          219 KISA  222 (575)
Q Consensus       219 Lel~  222 (575)
                      ++..
T Consensus       214 ~k~~  217 (409)
T TIGR00540       214 AKAG  217 (409)
T ss_pred             HHcC
Confidence            7653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.32  E-value=4.2e-06  Score=86.13  Aligned_cols=137  Identities=26%  Similarity=0.285  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAG----DRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~----p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.+|+..+...+++++|...|.++..+.    ...  ..++...|.+|.+. ++++|+.++..+++             
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~-------------  102 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE-------------  102 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH-------------
Confidence            46677778888889999999888886542    111  23456666666555 88888877544322             


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CCH---H--HHHHHHH
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGV--DMN---K--QCNLAIC  201 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~q-GryeEAe~~yrkALeidP--dn~---~--~~NLA~i  201 (575)
                                  .+...|+.      ..-..++.++|.+|... |++++|+.+|++|+++.-  +..   .  ..++|.+
T Consensus       103 ------------~y~~~G~~------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen  103 ------------IYREAGRF------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL  164 (282)
T ss_dssp             ------------HHHHCT-H------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ------------HHHhcCcH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence                        11222210      00134889999999999 999999999999999842  222   1  5689999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHcCC
Q 038048          202 LMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       202 y~~qGr~eEAi~lLekALel~P~  224 (575)
                      +..+|+|++|+.+|+++....-+
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999986543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.28  E-value=3.1e-06  Score=89.12  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL  165 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL  165 (575)
                      ....-++.||..++..|++.+|+..|..                                     ++..+|++..+++..
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHa-------------------------------------Ave~dp~~Y~aifrR   78 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHA-------------------------------------AVEGDPNNYQAIFRR   78 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------------------------HHcCCchhHHHHHHH
Confidence            3345577899999999999999988544                                     367799999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          166 AWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       166 G~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |.+|+.+|+-.-|+.-+.++|++.||+.. ....|.+++++|++++|+.-|+++|..+|.+-
T Consensus        79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999 99999999999999999999999999998653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.26  E-value=1.7e-05  Score=77.96  Aligned_cols=137  Identities=16%  Similarity=0.054  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .+...+...+..|++++|+..|++.+...|..   ..+.+.+|.++...|++++|+..+..-+.           ..+  
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-----------~yP--   73 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-----------LYP--   73 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-----------H-T--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HCC--
Confidence            45566677899999999999999999987764   57899999999999999999987433111           000  


Q ss_pred             HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHH-H-----
Q 038048          133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ-----------QNNFEMAEQYYRKALSLGVDMNK-Q-----  195 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~-----------qGryeEAe~~yrkALeidPdn~~-~-----  195 (575)
                                           -.|.-+.+++.+|.++..           ++...+|+..|+..+...|+..- .     
T Consensus        74 ---------------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~  132 (203)
T PF13525_consen   74 ---------------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR  132 (203)
T ss_dssp             ---------------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred             ---------------------CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence                                 022233466777766544           45567999999999999998873 1     


Q ss_pred             ------------HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          196 ------------CNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       196 ------------~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                                  +.+|..|.+.|.+..|+..++.+++..|+..
T Consensus       133 l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen  133 LAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence                        2569999999999999999999999999754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1e-05  Score=86.80  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=103.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDR---------------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK  127 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~---------------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~  127 (575)
                      .++-.+++..|...|++|+..=..               -..++.|||.+|+++++|.+|+..-.               
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~---------------  281 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCN---------------  281 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH---------------
Confidence            456678899999999998763221               02468899999999999999998732               


Q ss_pred             hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          128 NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       128 l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                                            +.+.++|.+.-++|..|.+|..+|+|+.|+..|++|++++|+|.. ...|..+-.+..
T Consensus       282 ----------------------kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  282 ----------------------KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             ----------------------HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence                                  246789999999999999999999999999999999999999988 888888877777


Q ss_pred             CHHHH-HHHHHHHHHHcCC
Q 038048          207 RVTEA-KSLLQAVKISAGN  224 (575)
Q Consensus       207 r~eEA-i~lLekALel~P~  224 (575)
                      ++.+. .++|.+++.....
T Consensus       340 ~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  340 EYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHHHHHHHhhcccc
Confidence            76665 7888888886543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=5.6e-06  Score=93.61  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=90.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      +++++++...|+..++++|-....|+++|.++++.++++.|..+|..                                 
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r---------------------------------  544 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR---------------------------------  544 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH---------------------------------
Confidence            46677777777777777777667777777777777777777666422                                 


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                          .+.++|++..+|+||+.+|...|+-.+|-..+.+|++-+-++.. +-|.-.+..+.|.+++|+..|.+.+.+....
T Consensus       545 ----cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  545 ----CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             ----HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence                35667888888888888888888888888888888888766666 7777778888888888888888877765543


Q ss_pred             C
Q 038048          226 Q  226 (575)
Q Consensus       226 ~  226 (575)
                      .
T Consensus       621 ~  621 (777)
T KOG1128|consen  621 K  621 (777)
T ss_pred             c
Confidence            3

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.24  E-value=6.4e-05  Score=76.32  Aligned_cols=132  Identities=11%  Similarity=-0.050  Sum_probs=103.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      ..+...+..|++++|+..|++++...|....   +.+.||.+|.+++++++|+..+...                     
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f---------------------   95 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF---------------------   95 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Confidence            3445557789999999999999999998764   4589999999999999999985432                     


Q ss_pred             HhHHHHHHHHhchhhHHhhcC---CcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQ---EKSRILGNLAWAYMQQN------------------NFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~P---d~~~a~~nLG~aY~~qG------------------ryeEAe~~yrkALeidPdn~~  194 (575)
                                      +.+.|   +.+.+++.+|.++..++                  ...+|+..|++.++..|+..-
T Consensus        96 ----------------i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866         96 ----------------IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             ----------------HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence                            23333   33458888887765544                  236788999999999998763


Q ss_pred             -H-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          195 -Q-----------------CNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       195 -~-----------------~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                       .                 +..|..|.+.|+|..|+.-++.+++..|+...
T Consensus       160 a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~  210 (243)
T PRK10866        160 TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA  210 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence             1                 15588899999999999999999999987653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.21  E-value=2.4e-05  Score=84.88  Aligned_cols=113  Identities=18%  Similarity=0.185  Sum_probs=97.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      ...+.++.|+.+|++..+.+|.   +...||.+|...++-.+|+.+...                               
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~-------------------------------  225 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNE-------------------------------  225 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHH-------------------------------
Confidence            4457899999999999888876   455689999999998888877322                               


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                            ++...|.+..++...+..++..++++.|+.+.++|+.+.|+... |+.||.+|..+|++++|+..++.
T Consensus       226 ------aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  226 ------ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             ------HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence                  23447888889999999999999999999999999999999999 99999999999999999987763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.18  E-value=9.2e-06  Score=88.65  Aligned_cols=70  Identities=13%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH--
Q 038048           83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR--  160 (575)
Q Consensus        83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~--  160 (575)
                      .+|+.+.+++|+|.+|..+|+|++|+.++..                                     ++.++|++..  
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~r-------------------------------------ALeL~Pd~aeA~  112 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFET-------------------------------------ALELNPNPDEAQ  112 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHhhCCCchHHH
Confidence            4788899999999999999999999998544                                     3567999885  


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          161 -ILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       161 -a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                       +|+|+|.+|..+|++++|+.+|++|+++.
T Consensus       113 ~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098        113 AAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence             59999999999999999999999999983

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.17  E-value=0.00011  Score=83.86  Aligned_cols=177  Identities=18%  Similarity=0.121  Sum_probs=122.3

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-------------  116 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------  116 (575)
                      ++..-..+.+...+....+.+.|..+.+.+++++ ..+..+|..||.++..++++.+|+.+-..+++             
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~  554 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI  554 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence            3333444556667778889999999999999994 55677999999999999999999998322222             


Q ss_pred             ----------HHHHHHHHHHHhhH----------HHH-------------------HHHhHHHHHHHHhch---------
Q 038048          117 ----------EEIELLQNKLKNIE----------EGI-------------------AFAGVKTKMARSQGK---------  148 (575)
Q Consensus       117 ----------eAi~lL~~~L~l~~----------~a~-------------------a~~~nla~al~sqg~---------  148 (575)
                                ++..++...+.+..          ++.                   .....+......++.         
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence                      22222222221111          000                   001111111111111         


Q ss_pred             ---------------------------------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          149 ---------------------------------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       149 ---------------------------------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                                                             ..+-.+.|..+..|+..|.++..+|++.||.+.|..|+.++
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence                                                   00122245555677888999999999999999999999999


Q ss_pred             CCCHH-HHHHHHHHHHcCCHHHHHH--HHHHHHHHcCCCCC
Q 038048          190 VDMNK-QCNLAICLMHMNRVTEAKS--LLQAVKISAGNRQM  227 (575)
Q Consensus       190 Pdn~~-~~NLA~iy~~qGr~eEAi~--lLekALel~P~n~~  227 (575)
                      |++.. +..||.+|.+.|+..-|..  ++..+++++|.+..
T Consensus       715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e  755 (799)
T KOG4162|consen  715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE  755 (799)
T ss_pred             CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence            99999 9999999999999888888  99999999998763

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.17  E-value=2.3e-05  Score=72.55  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      ....++..|++++|+..|+.++...++.   ..+...||.++..+|++++|+..+...                      
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----------------------  111 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI----------------------  111 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----------------------
Confidence            3345577899999999999999977554   347889999999999999999984221                      


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL  186 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL  186 (575)
                                      .-.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus       112 ----------------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  112 ----------------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ----------------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                            0112223477789999999999999999999985

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=3.7e-05  Score=83.29  Aligned_cols=156  Identities=15%  Similarity=-0.046  Sum_probs=86.2

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +++..|..|-..|+..+-.++.++.|.|++....|++++|.+.|..++.......+.....- .-....+++..++.-..
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFL  548 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHH
Confidence            36666777777777777777777777777777778888777775544432111111110000 00001111111111111


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +-..+.  -++..+++.++.+|..+.+..+|+++|-++..+-|+++. +..||.+|-..|+-.+|.+++-......|.+.
T Consensus       549 klh~il--~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni  626 (840)
T KOG2003|consen  549 KLHAIL--LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI  626 (840)
T ss_pred             HHHHHH--HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence            101111  234456666677777777777777777777777777766 66677777777777777666666666566554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.12  E-value=1.4e-05  Score=92.74  Aligned_cols=162  Identities=14%  Similarity=0.025  Sum_probs=89.4

Q ss_pred             CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           52 SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        52 s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      +.-..|.-.++++..--|...|...|++|.++++....+...++..|.....+++|.++....-+.+..-.....     
T Consensus       490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n-----  564 (1238)
T KOG1127|consen  490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN-----  564 (1238)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh-----
Confidence            333344444444433335555555666666655555555555555566666665555553222222111110000     


Q ss_pred             HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          132 GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       132 a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                          +...+-.+.+.++        +.++.++|.+.+.|..||.+|..-|+|.-|+..|.+|..++|+.-- .+-.|.+.
T Consensus       565 ----W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  565 ----WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             ----hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence                0000000000000        2346667777777777777777777777777777777777777776 77777777


Q ss_pred             HHcCCHHHHHHHHHHHHHHc
Q 038048          203 MHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       203 ~~qGr~eEAi~lLekALel~  222 (575)
                      ...|+|.+|+..+..++...
T Consensus       641 cd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  641 CDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             HHhhhHHHHHHHHHHHHHHH
Confidence            77777777777777776654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.09  E-value=3.4e-05  Score=74.18  Aligned_cols=105  Identities=10%  Similarity=-0.065  Sum_probs=87.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +......|++++|+.+|+-....++.+...+.+||.++..+++|++|+..|.-                           
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~---------------------------   96 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAV---------------------------   96 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence            34457789999999999999899999999999999999999999999998533                           


Q ss_pred             HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038048          141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM  203 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~  203 (575)
                                +..++++++...+..|.+|+.+|+.++|..+|.-|+. .|.+......|..|+
T Consensus        97 ----------A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L  148 (165)
T PRK15331         97 ----------AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL  148 (165)
T ss_pred             ----------HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence                      2345678888899999999999999999999999998 566555444454444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.06  E-value=8e-05  Score=85.66  Aligned_cols=170  Identities=10%  Similarity=0.001  Sum_probs=90.0

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH--------------------Hh
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEA--------------------RS  112 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~--------------------~~  112 (575)
                      ...|.-........+++++|..++..+++.+ +.+..+++.|...|.+.|++++|+.+                    ..
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~  404 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH  404 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence            3444444444555667777777777776655 22334566667777777777777766                    23


Q ss_pred             cCHHHHHHHHHHHHH--hhHHHHHHHhHHHHHHHHhch-----h---hHH---hhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048          113 GRIEEEIELLQNKLK--NIEEGIAFAGVKTKMARSQGK-----K---IQI---TVEQEKSRILGNLAWAYMQQNNFEMAE  179 (575)
Q Consensus       113 gaLeeAi~lL~~~L~--l~~~a~a~~~nla~al~sqg~-----k---~aL---~L~Pd~~~a~~nLG~aY~~qGryeEAe  179 (575)
                      +..++|+.++.....  ..++ ..++..+..++...|.     +   ...   .+.|+ ...|..+..+|.+.|++++|+
T Consensus       405 G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        405 GRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             CCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHH
Confidence            344455555554432  1111 1222223333333332     0   001   11122 225566666677777777776


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          180 QYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       180 ~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.++++ .+.|+...+..|..++...|+++.|+..+++++++.|++.
T Consensus       483 ~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~  528 (697)
T PLN03081        483 AMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL  528 (697)
T ss_pred             HHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence            666553 2344433366666666666777777766666666666543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=4e-05  Score=86.91  Aligned_cols=153  Identities=11%  Similarity=0.033  Sum_probs=108.5

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      ..-|+..+|..+.++-++ .|..+..|..||.+..+.-=|++|.++....-..|...++..+..       ..+...+..
T Consensus       435 ~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~-------~~~fs~~~~  506 (777)
T KOG1128|consen  435 LLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILS-------NKDFSEADK  506 (777)
T ss_pred             HHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccccc-------chhHHHHHH
Confidence            334566666666666666 444556666677777766667777766433322222221111100       011111111


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      ..  +..+.++|-....|+++|.++.+.++++.|..+|.+.+.++|++.. ++||+.+|+..|+-.+|...+.++++-+-
T Consensus       507 hl--e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  507 HL--ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HH--HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            11  2457889999999999999999999999999999999999999999 99999999999999999999999999886


Q ss_pred             CCCC
Q 038048          224 NRQM  227 (575)
Q Consensus       224 ~n~~  227 (575)
                      ++|.
T Consensus       585 ~~w~  588 (777)
T KOG1128|consen  585 QHWQ  588 (777)
T ss_pred             CCCe
Confidence            6654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.04  E-value=7.8e-05  Score=76.79  Aligned_cols=146  Identities=19%  Similarity=0.251  Sum_probs=94.0

Q ss_pred             cCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHC-CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           67 DKDPSRAVSLFWAAINA---GDR---VDSALKDMAVVMKQL-DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l---~p~---~~~Al~nLA~iy~qq-GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      ..++++|+.+|++|+.+   ...   ...++..+|.+|... |++++|+++|..+++.    +                 
T Consensus        87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~----y-----------------  145 (282)
T PF14938_consen   87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL----Y-----------------  145 (282)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH----H-----------------
T ss_pred             hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----H-----------------
Confidence            34778888888888764   111   134677888888887 8888888876554332    1                 


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH--HHHHHHHHHHcCCHHHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK--QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~--~~NLA~iy~~qGr~eEA  211 (575)
                          ...+.      .-.-...+.++|.++..+|+|++|+.+|+++....-++      ..  ++..++|++..|++..|
T Consensus       146 ----~~e~~------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A  215 (282)
T PF14938_consen  146 ----EQEGS------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA  215 (282)
T ss_dssp             ----HHTT-------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ----HHCCC------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence                11110      00012377899999999999999999999998864321      12  45788899999999999


Q ss_pred             HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhcc
Q 038048          212 KSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELES  247 (575)
Q Consensus       212 i~lLekALel~P~n~~~~~~l~slerA~elL~ele~  247 (575)
                      ...|++....+|.-...    ....-+..++..++.
T Consensus       216 ~~~~~~~~~~~~~F~~s----~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  216 RKALERYCSQDPSFASS----REYKFLEDLLEAYEE  247 (282)
T ss_dssp             HHHHHHHGTTSTTSTTS----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhCCCCCCc----HHHHHHHHHHHHHHh
Confidence            99999999988754322    223334445544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.03  E-value=1.8e-05  Score=63.92  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=57.4

Q ss_pred             HHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcC
Q 038048           94 MAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQN  173 (575)
Q Consensus        94 LA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG  173 (575)
                      |..+|.+.++|++|+++...                                     .+.++|++..++..+|.+|..+|
T Consensus         1 l~~~~~~~~~~~~A~~~~~~-------------------------------------~l~~~p~~~~~~~~~a~~~~~~g   43 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLER-------------------------------------ALELDPDDPELWLQRARCLFQLG   43 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHH-------------------------------------HHHhCcccchhhHHHHHHHHHhc
Confidence            46789999999999987322                                     36679999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH
Q 038048          174 NFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       174 ryeEAe~~yrkALeidPdn~~  194 (575)
                      ++++|+..|++++++.|++..
T Consensus        44 ~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen   44 RYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             cHHHHHHHHHHHHHHCCCcHH
Confidence            999999999999999999987

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.00012  Score=76.27  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=101.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH--H-HH-H-HHHHHHHHhhHHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI--E-EE-I-ELLQNKLKNIEEGIA  134 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL--e-eA-i-~lL~~~L~l~~~a~a  134 (575)
                      ++.++...+++++|+.++.+.     ...++..-+..+|+.++|++.|.+.+...-  . .+ + .+....+.+. .+..
T Consensus       108 ~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e  181 (290)
T PF04733_consen  108 AATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGE  181 (290)
T ss_dssp             HHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCch
Confidence            445666689999998877543     456777778899999999999998742211  0 00 0 1111111100 0000


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH-HHHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV-TEAK  212 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~-eEAi  212 (575)
                      .+......+.+     ....-+..+.+++.++.+++.+|+|++|+..+.+|+..+|+++. ..|++.+...+|+. +.+.
T Consensus       182 ~~~~A~y~f~E-----l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  182 KYQDAFYIFEE-----LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             CCCHHHHHHHH-----HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             hHHHHHHHHHH-----HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence            00111111111     11222455678899999999999999999999999999999999 99999999999999 6788


Q ss_pred             HHHHHHHHHcCCCC
Q 038048          213 SLLQAVKISAGNRQ  226 (575)
Q Consensus       213 ~lLekALel~P~n~  226 (575)
                      +++.++...+|+++
T Consensus       257 ~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  257 RYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHCHHHTTTSH
T ss_pred             HHHHHHHHhCCCCh
Confidence            89999988888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.02  E-value=5.1e-05  Score=73.95  Aligned_cols=95  Identities=20%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH---HHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDE---AIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydE---Aie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      ++.|.+.++.+...+|.+.+++++=|.+|+.+.++..   +.++    +++++.-++                       
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~m----iedAisK~e-----------------------   59 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKM----IEDAISKFE-----------------------   59 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHH----HHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHH----HHHHHHHHH-----------------------
Confidence            4678888888899999999999999999999877644   5444    222332222                       


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQQNN-----------FEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGr-----------yeEAe~~yrkALeidPdn~~  194 (575)
                         .++.++|+...++++||.+|..++.           |++|..+|++|+..+|+|..
T Consensus        60 ---eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   60 ---EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ---HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ---HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence               3467899999999999999988865           56666666666666666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.01  E-value=0.00025  Score=79.96  Aligned_cols=182  Identities=10%  Similarity=0.119  Sum_probs=130.5

Q ss_pred             hhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc----------
Q 038048           44 FHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG----------  113 (575)
Q Consensus        44 y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g----------  113 (575)
                      |..........--|++..++..+.++.++|+.+++.+|+.-|.....|..+|.++.++++.+.|.+.|..          
T Consensus       641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip  720 (913)
T KOG0495|consen  641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP  720 (913)
T ss_pred             HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence            3334443344556777778888899999999999999999999999999999999999999999988322          


Q ss_pred             -------------CHHHHHHHHHHHHHhhHHHHHHH-----------------hHHHHHHHHh---ch------------
Q 038048          114 -------------RIEEEIELLQNKLKNIEEGIAFA-----------------GVKTKMARSQ---GK------------  148 (575)
Q Consensus       114 -------------aLeeAi~lL~~~L~l~~~a~a~~-----------------~nla~al~sq---g~------------  148 (575)
                                   .+..|..+|.......+.+..++                 ...++++.+-   |.            
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~  800 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP  800 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence                         22233344444331111111111                 0111111110   00            


Q ss_pred             -h-----hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          149 -K-----IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       149 -k-----~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                       +     -++..-.+++.++..+|.++....++++|...|.+|+.++||+.+ +..+-..+...|.-++-...|.+....
T Consensus       801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence             0     123445677778899999999999999999999999999999999 999999999999999999999998888


Q ss_pred             cCCC
Q 038048          222 AGNR  225 (575)
Q Consensus       222 ~P~n  225 (575)
                      .|.+
T Consensus       881 EP~h  884 (913)
T KOG0495|consen  881 EPTH  884 (913)
T ss_pred             CCCC
Confidence            8865

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00017  Score=80.40  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC---H-----H-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-------VDM---N-----K-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-------Pdn---~-----~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      ..+.+||.+.++...|+|.+|++.+++|+.+-       -.+   .     . ..-|+.+|..+|+.+||..+|..++..
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            45699999999999999999999999996552       112   1     1 347899999999999999999999999


Q ss_pred             cCCCC
Q 038048          222 AGNRQ  226 (575)
Q Consensus       222 ~P~n~  226 (575)
                      ++.|.
T Consensus       254 ~~~D~  258 (652)
T KOG2376|consen  254 NPADE  258 (652)
T ss_pred             cCCCc
Confidence            88764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.00  E-value=0.0002  Score=82.34  Aligned_cols=52  Identities=15%  Similarity=0.005  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR  111 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~  111 (575)
                      |.-....+...|++++|..+|...   .+.+..+|+.|...|.+.|++++|+.++
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf  313 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLY  313 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence            333445566678899999999765   3345668889999999999999999884

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.99  E-value=0.00018  Score=80.66  Aligned_cols=65  Identities=22%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +++.|+..|...|++++|+.+..+||+..|..++ ++..|.+|.+.|++.+|...++.+..++..|
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            6689999999999999999999999999999999 9999999999999999999999999998864

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.97  E-value=0.00016  Score=85.17  Aligned_cols=154  Identities=12%  Similarity=0.050  Sum_probs=106.6

Q ss_pred             hhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--
Q 038048           42 DIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--  119 (575)
Q Consensus        42 e~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--  119 (575)
                      ..+......+...+.+...+..+-..|+.++|...|+++|+.+|.++.+++++|..|... ++++|++++.+++...+  
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~  182 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK  182 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence            334455555555566666667777789999999999999999999999999999999999 99999999777665432  


Q ss_pred             -------HHHHHHHHhhHHHHHHHhHHHHHHH-HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048          120 -------ELLQNKLKNIEEGIAFAGVKTKMAR-SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       120 -------~lL~~~L~l~~~a~a~~~nla~al~-sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd  191 (575)
                             .+....+...+....++..+..... +.+       .-.-...+.-|=..|...++|++++.+++.+|+++|.
T Consensus       183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence                   1111111111111111111111111 101       1112235555668899999999999999999999999


Q ss_pred             CHH-HHHHHHHHH
Q 038048          192 MNK-QCNLAICLM  203 (575)
Q Consensus       192 n~~-~~NLA~iy~  203 (575)
                      |.. ...|+.+|.
T Consensus       256 n~~a~~~l~~~y~  268 (906)
T PRK14720        256 NNKAREELIRFYK  268 (906)
T ss_pred             chhhHHHHHHHHH
Confidence            998 999999985

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.97  E-value=0.00015  Score=71.21  Aligned_cols=123  Identities=18%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA  166 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG  166 (575)
                      .+..++..|..+++.|+|++|+..+......           .                       --.+.-..+.+.+|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----------~-----------------------P~s~~a~~A~l~la   49 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----------Y-----------------------PNSPYAPQAQLMLA   49 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------------------------TTSTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------C-----------------------CCChHHHHHHHHHH
Confidence            3567899999999999999999984332110           0                       01233456899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048          167 WAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHM-----------NRVTEAKSLLQAVKISAGNRQMDTSY  231 (575)
Q Consensus       167 ~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~q-----------Gr~eEAi~lLekALel~P~n~~~~~~  231 (575)
                      .+|...|+|++|+..|++.+...|+++.    ++.+|.++..+           +...+|+..|+.++...|+......+
T Consensus        50 ~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A  129 (203)
T PF13525_consen   50 YAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA  129 (203)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence            9999999999999999999999999774    67788886544           45569999999999999987643333


Q ss_pred             HHHHHHHHHHHH
Q 038048          232 SRSFERAIQMLT  243 (575)
Q Consensus       232 l~slerA~elL~  243 (575)
                      ...+..+...+.
T Consensus       130 ~~~l~~l~~~la  141 (203)
T PF13525_consen  130 KKRLAELRNRLA  141 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.96  E-value=0.00017  Score=73.28  Aligned_cols=120  Identities=13%  Similarity=0.047  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH---HHHH
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS---RILG  163 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~---~a~~  163 (575)
                      .+..++..|..+.+.|+|++|++.+...                                     +...|...   .+.+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l-------------------------------------~~~yP~s~~a~~a~l   73 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEAL-------------------------------------DNRYPFGPYSQQVQL   73 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------------------------HHhCCCChHHHHHHH
Confidence            4567888999999999999999984332                                     22234333   3669


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcC------------------CHHHHHHHHHHHHHH
Q 038048          164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMN------------------RVTEAKSLLQAVKIS  221 (575)
Q Consensus       164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qG------------------r~eEAi~lLekALel  221 (575)
                      .||.+|.++++|++|+..|++.++++|+++.    ++.+|.++..++                  ...+|+..|+++++.
T Consensus        74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~  153 (243)
T PRK10866         74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG  153 (243)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999885    678888865544                  246788999999999


Q ss_pred             cCCCCCChhHHHHHHHHHHHHH
Q 038048          222 AGNRQMDTSYSRSFERAIQMLT  243 (575)
Q Consensus       222 ~P~n~~~~~~l~slerA~elL~  243 (575)
                      .|+......+...+......|+
T Consensus       154 yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        154 YPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             CcCChhHHHHHHHHHHHHHHHH
Confidence            9975433333333344444444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.95  E-value=0.00094  Score=75.50  Aligned_cols=186  Identities=13%  Similarity=0.048  Sum_probs=138.6

Q ss_pred             hhhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH-
Q 038048           40 KGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE-  118 (575)
Q Consensus        40 Rae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA-  118 (575)
                      |+-.-+.+...|....-+.+|....-.-|..+.-..+|++|+..-|.....+...|..+...|+.-+|..+...+++.. 
T Consensus       536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p  615 (913)
T KOG0495|consen  536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP  615 (913)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence            4444455667777777788887777777888888999999999888888888888999999999998888855544421 


Q ss_pred             ----------------------HHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048          119 ----------------------IELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus       119 ----------------------i~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a  168 (575)
                                            ..++.+.-.... ....+.+.....+.++.        +..+..-|+....|..+|.+
T Consensus       616 nseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi  694 (913)
T KOG0495|consen  616 NSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI  694 (913)
T ss_pred             CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence                                  111111110000 00112222222222222        33567789999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.++++.+.|...|...++.-|.... |.-|+.+--+.|+.-.|..+|+++.-.+|.+.
T Consensus       695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999 99999999999999999999999999999875

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.95  E-value=0.0006  Score=82.45  Aligned_cols=62  Identities=21%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          159 SRILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      ..+|+.|..+|.+.|++++|+.+|++..+  +.|+...+..|...|.+.|++++|+.+|+++..
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44677777777777777777777777655  345544466777777777777777777777655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.94  E-value=8e-05  Score=83.63  Aligned_cols=125  Identities=13%  Similarity=0.092  Sum_probs=105.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      ..-.+++...+.+.++.|...|...+.+...|..+..+|+-++|..+-..                              
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~------------------------------   66 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRL------------------------------   66 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHH------------------------------
Confidence            34456889999999999999999999999999999999999999987211                              


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                             .+..++.....|+-+|.++....+|++|+.+|+.||.+.|+|.. +..|+.+-..+++++-....-.+.|+++
T Consensus        67 -------glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   67 -------GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             -------HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence                   13446666678888999999999999999999999999999998 8889988889999988888888888888


Q ss_pred             CCC
Q 038048          223 GNR  225 (575)
Q Consensus       223 P~n  225 (575)
                      |..
T Consensus       140 ~~~  142 (700)
T KOG1156|consen  140 PSQ  142 (700)
T ss_pred             hhh
Confidence            864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=7.6e-05  Score=76.67  Aligned_cols=99  Identities=18%  Similarity=0.076  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC---CcHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ---EKSRILGNLAW  167 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P---d~~~a~~nLG~  167 (575)
                      .|+.|.-++..|+|.+|+..+..-                                     +..-|   --++++|.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~f-------------------------------------i~~YP~s~~~~nA~yWLGe  186 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAF-------------------------------------IKKYPNSTYTPNAYYWLGE  186 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------HHcCCCCcccchhHHHHHH
Confidence            789999999999999999874331                                     11222   23569999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++.+|+|++|...|..+++-.|+.+.    ++-||.++.++|+.++|...|+++++..|...
T Consensus       187 ~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         187 SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999998874    89999999999999999999999999999753

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.92  E-value=7.2e-05  Score=59.59  Aligned_cols=50  Identities=22%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR  114 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga  114 (575)
                      +..|++++|+.+|++++..+|++..+++.||.+|..+|++++|+.++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999985543

...

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.89  E-value=0.00096  Score=80.73  Aligned_cols=60  Identities=13%  Similarity=0.056  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG-VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeid-Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      +|+.|..+|.+.|++++|+.+|+++.+.+ +.+.. +..|...|.+.|++++|+.+|+++.+
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            44444444555555555555555444443 11222 44444444444444444444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.00013  Score=74.88  Aligned_cols=104  Identities=12%  Similarity=-0.039  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI  133 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~  133 (575)
                      ++++..-++..||+..|+..|..-|+..|+.   +.|+|-||.+++.+|+|++|...+...+.                 
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-----------------  206 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK-----------------  206 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH-----------------
Confidence            5666677788999999999999999998876   57999999999999999999998544211                 


Q ss_pred             HHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          134 AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       134 a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                 .++      -.|.-+++++-||.+...+|+.++|...|+++++..|+...
T Consensus       207 -----------~~P------~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         207 -----------DYP------KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             -----------hCC------CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                       111      25666789999999999999999999999999999999886

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.00022  Score=74.40  Aligned_cols=157  Identities=17%  Similarity=0.129  Sum_probs=109.2

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH---HhhH------HHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL---KNIE------EGIAF  135 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L---~l~~------~a~a~  135 (575)
                      +.+..++.|+.+..-..+.+|.+..++..||.+|....+|.+|.++|.+--....+.-+..+   ..++      +++..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            56778899999999888999988888999999999999999999985432221111111110   0000      01110


Q ss_pred             H-------------hHHHHHH-HHhch----hhHHhhcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Q 038048          136 A-------------GVKTKMA-RSQGK----KIQITVEQ--EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-  194 (575)
Q Consensus       136 ~-------------~nla~al-~sqg~----k~aL~L~P--d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-  194 (575)
                      .             .++..+. .+.++    +..+.--|  ..+....|.|.++++.|+|++|++-|+.|++..--++. 
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence            0             0011110 01111    11222233  55678999999999999999999999999999988888 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      .+|+|.+....|+++.|+++.-++++.
T Consensus       181 AYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  181 AYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            999999999999999999998887764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.86  E-value=6.8e-05  Score=68.62  Aligned_cols=67  Identities=31%  Similarity=0.342  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+++++|+++..+|+.++|+.+|++|++...+...    ++.||.+|..+|++++|+.+|++++...|++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            37899999999999999999999999998765542    78999999999999999999999999888744

>PLN03077 Protein ECB2; Provisional

Probab=97.84  E-value=0.00088  Score=78.92  Aligned_cols=45  Identities=9%  Similarity=-0.056  Sum_probs=31.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR  111 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~  111 (575)
                      .+...|+.++|...|...    +.+..+|+.|...|.+.|+.++|++++
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf  577 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELF  577 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence            344457777777777664    334557777888888888888888774

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.82  E-value=3.8e-05  Score=81.11  Aligned_cols=98  Identities=22%  Similarity=0.164  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      +..-|+.|+++|+|+|||.+|...                                     +.+.|+++..+.|.+.+|+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~-------------------------------------ia~~P~NpV~~~NRA~AYl  142 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTA-------------------------------------IAVYPHNPVYHINRALAYL  142 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhh-------------------------------------hccCCCCccchhhHHHHHH
Confidence            346799999999999999997664                                     5679999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++.+|..|+.-...|+.++-.... +...|.+-..+|...||.+-++.+|.+.|++
T Consensus       143 k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  143 KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            999999999999999999988888 8889999999999999999999999999974

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.81  E-value=3.7e-05  Score=57.49  Aligned_cols=41  Identities=32%  Similarity=0.249  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI  200 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~  200 (575)
                      .++..||.+|..+|++++|+.+|+++|+.+|+++. +..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            47889999999999999999999999999999999 888875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.80  E-value=0.00067  Score=66.94  Aligned_cols=147  Identities=16%  Similarity=0.082  Sum_probs=95.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE-----EIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee-----Ai~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      .-||+.+..-..+.+...|.+ .-.+.||+.+.++|++.||..+|.+++.-     +.-+|+.....+     .....+.
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-----a~~~~A~  142 (251)
T COG4700          69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-----AIQEFAA  142 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-----hhccHHH
Confidence            347777777777777777764 35778999999999999999997665431     111122111100     0011111


Q ss_pred             HHHHhchhhHHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          142 MARSQGKKIQITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekAL  219 (575)
                      +....  +...+.+|.  .++.+..+|.+|..+|++++|+..|+.++...|+....+.++..+.+||+.+||..-+..+.
T Consensus       143 a~~tL--e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         143 AQQTL--EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHH--HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            11000  011122332  23466778899999999999999999999999988888888899999999988888777666


Q ss_pred             HH
Q 038048          220 IS  221 (575)
Q Consensus       220 el  221 (575)
                      +.
T Consensus       221 d~  222 (251)
T COG4700         221 DT  222 (251)
T ss_pred             HH
Confidence            53

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.80  E-value=0.00034  Score=65.92  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      +..++.-|...++.|+|++|++.+...        ...   .                       --.+.-..+...||.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L--------~~r---y-----------------------P~g~ya~qAqL~l~y   55 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEAL--------DTR---Y-----------------------PFGEYAEQAQLDLAY   55 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH--------Hhc---C-----------------------CCCcccHHHHHHHHH
Confidence            557888899999999999999873220        000   0                       012233458899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCC---------------HHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNR---------------VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr---------------~eEAi~lLekALel~P~n~  226 (575)
                      +|+..|+|++|+..|++-++++|.++.    ++-.|.++..+..               ..+|...|++++...|+..
T Consensus        56 ayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   56 AYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            999999999999999999999999885    6778999988887               8888888888888888754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.76  E-value=4.6e-05  Score=53.28  Aligned_cols=33  Identities=39%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      .+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03077 Protein ECB2; Provisional

Probab=97.76  E-value=0.0014  Score=77.16  Aligned_cols=64  Identities=13%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      +..+|+.|...|.+.|+.++|+.+|++.++  +.||...+..+-.++.+.|++++|..+|+.+.+.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~  618 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK  618 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence            344555555555555555555555555554  3344444444444555555555555555555533

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.74  E-value=4.4e-05  Score=82.12  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=39.5

Q ss_pred             ChHHHHHHHHHHHHcCCCc----H--HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH
Q 038048           69 DPSRAVSLFWAAINAGDRV----D--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL  122 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~----~--~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL  122 (575)
                      .++.|+++|..-|++-...    +  .++-+||+.|+-+|+|++||..-..+++.+.+.-
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG  229 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG  229 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence            4577888888777653222    2  3788999999999999999998666666554433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00047  Score=71.73  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=94.4

Q ss_pred             HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHH
Q 038048           46 VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQN  124 (575)
Q Consensus        46 ~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~  124 (575)
                      .....|..-..+...+.+++..++.+.|...|.+|+++.|++++.+..+|.++..+.. ...+..         ..++  
T Consensus       148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a---------~~ll--  216 (287)
T COG4235         148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA---------RALL--  216 (287)
T ss_pred             HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH---------HHHH--
Confidence            4567788888899999999999999999999999999999999999999988776542 222211         1111  


Q ss_pred             HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                              +.++.++|.+..+++.||..++++|+|.+|+..++..|+..|.+..
T Consensus       217 ------------------------~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 ------------------------RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             ------------------------HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence                                    1346789999999999999999999999999999999999987775

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.00083  Score=71.50  Aligned_cols=148  Identities=14%  Similarity=0.080  Sum_probs=96.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH--HHHHHHHH-HHhh--HHHHHHHh
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE--EIELLQNK-LKNI--EEGIAFAG  137 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee--Ai~lL~~~-L~l~--~~a~a~~~  137 (575)
                      ..+--+|+++|+..|.-+.+.+.-..+...+||.++.-+|.|.||..+..++-+.  .+.++-.. +++.  .....+..
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~  145 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHS  145 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3344566777777666666555445556666777777777777776663332211  11111111 1100  01112222


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                      ++.+..                +-...|+.+.+..-.|++|+..|.++|.-+|+... ..++|.||.++.=++-+...+.
T Consensus       146 ~LqD~~----------------EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  146 SLQDTL----------------EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             HHhhhH----------------HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            222222                23356777888888999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHcCCCC
Q 038048          217 AVKISAGNRQ  226 (575)
Q Consensus       217 kALel~P~n~  226 (575)
                      -.|...|+..
T Consensus       210 vYL~q~pdSt  219 (557)
T KOG3785|consen  210 VYLRQFPDST  219 (557)
T ss_pred             HHHHhCCCcH
Confidence            9999988754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.69  E-value=3.4e-05  Score=55.13  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH
Q 038048          181 YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS  213 (575)
Q Consensus       181 ~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~  213 (575)
                      +|++||+++|+++. ++|||.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            47889999999998 9999999999999998863

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.68  E-value=0.0067  Score=53.61  Aligned_cols=66  Identities=32%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      ....+.+++..+...+++++|+..+.+++...|.... ...++.++...|.+++|...+.+++...|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3445555555555555555555555555555555333 44555554455555555555555555554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.66  E-value=0.00083  Score=75.73  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=121.1

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      +.|.....++--|...--.|+-++|..+-+.++..++.+...|.-+|+++..-.+|+|||.+|+.+              
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA--------------  101 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA--------------  101 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH--------------
Confidence            445544455555555555678899999999999999999999999999999999999999997664              


Q ss_pred             hHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          129 IEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       129 ~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                                             +.++|++..++..|+.+..++++|+-....-.+.|++.|.+.. |..+|..+...|+
T Consensus       102 -----------------------l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen  102 -----------------------LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             -----------------------HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence                                   5679999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 038048          208 VTEAKSLLQAVKISAG  223 (575)
Q Consensus       208 ~eEAi~lLekALel~P  223 (575)
                      +..|..+++.......
T Consensus       159 y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen  159 YKMALEILEEFEKTQN  174 (700)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999888763

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.00011  Score=50.80  Aligned_cols=33  Identities=36%  Similarity=0.447  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      .+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478889999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=97.64  E-value=0.0005  Score=75.48  Aligned_cols=115  Identities=11%  Similarity=0.004  Sum_probs=98.8

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      +..+|..+-++|+++++.++.++..+|.++.-.++++.|+..+.+                                   
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~r-----------------------------------  363 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQ-----------------------------------  363 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHH-----------------------------------
Confidence            456788899999999999999999999999999999999987433                                   


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                        ++.++|+.+.+++..|++....|+.++|.+.+++|++++|--..  ...|-.-..--...++|+.+|-+-.+
T Consensus       364 --A~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        364 --AKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             --HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence              36789999999999999999999999999999999999998887  55666624455678999999876443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.0016  Score=66.73  Aligned_cols=124  Identities=16%  Similarity=0.167  Sum_probs=95.1

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      ....+.+++|+++|...|+-+|.+..++...-.++..+|+--+||+..           ...++....+...+..++++|
T Consensus        96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l-----------n~YL~~F~~D~EAW~eLaeiY  164 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL-----------NEYLDKFMNDQEAWHELAEIY  164 (289)
T ss_pred             HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHH
Confidence            345689999999999999999999888887777888899988888762           222333344445566666666


Q ss_pred             HHhch--------hhHHhhcCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH-HHHH
Q 038048          144 RSQGK--------KIQITVEQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLGVDMNK-QCNL  198 (575)
Q Consensus       144 ~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeidPdn~~-~~NL  198 (575)
                      .+.+.        +..+.+.|.++..+..||.+++-+|   ++.-|..+|.+||++.|.+.. ++.+
T Consensus       165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            65555        3457789999999999999888887   567899999999999997665 5533

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.59  E-value=0.0016  Score=76.61  Aligned_cols=158  Identities=16%  Similarity=0.036  Sum_probs=101.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      .+....+++++|..++++++...+..     ..+...+|.++...|++++|+.++..+++.....- ...    ......
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~----~~~~~~  534 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYH----YALWSL  534 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chH----HHHHHH
Confidence            44567899999999999999854332     23567899999999999999999666554322110 000    000112


Q ss_pred             hHHHHHHHHhch--------hhHHhh-----c---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH-
Q 038048          137 GVKTKMARSQGK--------KIQITV-----E---QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-----NK-  194 (575)
Q Consensus       137 ~nla~al~sqg~--------k~aL~L-----~---Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-----~~-  194 (575)
                      .+++.++...|+        ...+.+     .   +....++..+|.++..+|++++|+..+++++.+....     .. 
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  614 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC  614 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence            233333333333        011111     0   1122345677888888888888888888888885421     12 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +.++|.++...|++++|...+++++.+...
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            556888888888888888888888887554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.59  E-value=0.00023  Score=69.53  Aligned_cols=74  Identities=15%  Similarity=0.083  Sum_probs=58.6

Q ss_pred             HhhcCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC-----------HH
Q 038048          152 ITVEQEKSRILGNLAWAYMQQN----------NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR-----------VT  209 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qG----------ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr-----------~e  209 (575)
                      ...+|.+.+.+++-|.+++.+.          .+++|+.-|++||.|+|+... +++||++|..++.           |+
T Consensus        18 y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~   97 (186)
T PF06552_consen   18 YAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE   97 (186)
T ss_dssp             HHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence            4568999999999998887774          457788999999999999999 9999999988776           78


Q ss_pred             HHHHHHHHHHHHcCCC
Q 038048          210 EAKSLLQAVKISAGNR  225 (575)
Q Consensus       210 EAi~lLekALel~P~n  225 (575)
                      +|..+|+++...+|++
T Consensus        98 kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   98 KATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            8889999999999975

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.59  E-value=5e-05  Score=80.22  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHH
Q 038048          162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFE  236 (575)
Q Consensus       162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~sle  236 (575)
                      +-.-|..|+++|+|+||+.+|.+++.++|.|+. +.|.|.+|+++.+|..|+.-+..++.++.....+.    .+-..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999 99999999999999999999999999865322111    1123344


Q ss_pred             HHHHHHHHhccccccCcccccccchhhhcCC
Q 038048          237 RAIQMLTELESPSVLKLTELEVGDDQKNQRP  267 (575)
Q Consensus       237 rA~elL~ele~al~~~p~~~e~~~~~~~~~s  267 (575)
                      ...++-...|..+.+.|...+.......+.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            4555555677777777776655444344443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00026  Score=70.43  Aligned_cols=104  Identities=21%  Similarity=0.129  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      +..-|+-++..|.|++|..-|+.+++.-......                                .-+-.|.|.|.+++
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e--------------------------------~rsIly~Nraaa~i  145 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE--------------------------------ERSILYSNRAAALI  145 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH--------------------------------HHHHHHhhhHHHHH
Confidence            4456889999999999998876665432111110                                01227889999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++.++.|+....+||+++|.+.. ....|.+|-++.+|++|+.-|.++++++|..-
T Consensus       146 Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  146 KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            999999999999999999999999 88889999999999999999999999999643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.53  E-value=7.6e-05  Score=53.35  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 038048           76 LFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIE  109 (575)
Q Consensus        76 lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie  109 (575)
                      +|++||+++|++..++++||.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999999999999999999999999999974

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=0.00066  Score=76.26  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           70 PSRAVSLFWAAINA--GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        70 ~eeAi~lf~kAL~l--~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      ...|....++++.+  ++..+.++..+|.++...|++++|+..+.+                                  
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~r----------------------------------  445 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINK----------------------------------  445 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------
Confidence            34556666676664  666678899999999999999999988544                                  


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                         ++.++|. ..+|..+|.+|...|++++|+..|++|+.++|..+.
T Consensus       446 ---Al~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        446 ---AIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ---HHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence               3566774 679999999999999999999999999999999997

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.52  E-value=0.0014  Score=61.86  Aligned_cols=105  Identities=13%  Similarity=0.045  Sum_probs=86.6

Q ss_pred             CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDR---VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~---~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      ....++..+...+..+++++|++.|+.....-|.   ...+...||.+|.+.+++++|+..+..                
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r----------------   72 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR----------------   72 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence            3445667778889999999999999998887655   356899999999999999999987322                


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcCCcHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCC
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSR---ILGNLAWAYMQQNN---------------FEMAEQYYRKALSLGVD  191 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~---a~~nLG~aY~~qGr---------------yeEAe~~yrkALeidPd  191 (575)
                                           -+.++|.++.   +++..|.+++.+..               ..+|...|++.+...|+
T Consensus        73 ---------------------FirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   73 ---------------------FIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             ---------------------HHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence                                 2556666654   88999999999887               99999999999999998


Q ss_pred             CHH
Q 038048          192 MNK  194 (575)
Q Consensus       192 n~~  194 (575)
                      ..-
T Consensus       132 S~y  134 (142)
T PF13512_consen  132 SEY  134 (142)
T ss_pred             Chh
Confidence            763

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.52  E-value=0.00098  Score=62.48  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      -++...-.++.+.|++.|.++|.+-|..+.+|+|.|.+|.-+|+.++|++-..++++    +.+..              
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale----Lag~~--------------  110 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE----LAGDQ--------------  110 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH----hcCcc--------------
Confidence            334555678999999999999999999999999999999999999999986333222    11111              


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      +.+.               -.++...|.+|..+|+-+.|..-|..|-++-..+..
T Consensus       111 trta---------------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  111 TRTA---------------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             chHH---------------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence            1111               127888999999999999999999999888766664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.51  E-value=0.00019  Score=74.87  Aligned_cols=148  Identities=16%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             ChHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           69 DPSRAVSLFWAAINAG-D-RVDSALKDMAVVMKQLDRSDEAIEARSGR--IEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~-p-~~~~Al~nLA~iy~qqGrydEAie~~~ga--LeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      +-+.++.-+...+... + .+.....-.|.+|...|++++|+.+..+.  +|...-...-.+.         .+..+.+.
T Consensus        81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~---------~~R~dlA~  151 (290)
T PF04733_consen   81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLK---------MNRPDLAE  151 (290)
T ss_dssp             THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHH---------TT-HHHHH
T ss_pred             chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHH---------cCCHHHHH
Confidence            4455655554443322 1 23345566688999999999999985443  2211000111111         11111111


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQN--NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG--ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      ..- +.....+.+..-+..-.+++.+..|  ++.+|.-+|++..+..+.++. .+.+|.+++.+|+|+||+..+++++..
T Consensus       152 k~l-~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~  230 (290)
T PF04733_consen  152 KEL-KNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK  230 (290)
T ss_dssp             HHH-HHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred             HHH-HHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            100 1122334444444444557777777  699999999998888788888 788999999999999999999999988


Q ss_pred             cCCCC
Q 038048          222 AGNRQ  226 (575)
Q Consensus       222 ~P~n~  226 (575)
                      +|.++
T Consensus       231 ~~~~~  235 (290)
T PF04733_consen  231 DPNDP  235 (290)
T ss_dssp             -CCHH
T ss_pred             ccCCH
Confidence            87654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.43  E-value=0.0076  Score=53.28  Aligned_cols=63  Identities=21%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPd-n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .+..++..+...+++++|+..+.+++...+. ... ..+++.++...+++++|+..+..++...|
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence            3444444444445555555555555555544 233 44455555555555555555555555444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0013  Score=65.53  Aligned_cols=97  Identities=21%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      +.-++..|++++|..-|..||.+-|...     -.|.|-|.+++++++++.||....+                      
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsK----------------------  159 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSK----------------------  159 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHh----------------------
Confidence            3446778999999999999999877643     2577889999999999999986333                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                     +|.++|.+..++...|.+|.++.+|++|+.-|.++++++|....
T Consensus       160 ---------------aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  160 ---------------AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             ---------------hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence                           46788999999999999999999999999999999999997653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.38  E-value=0.0032  Score=73.97  Aligned_cols=129  Identities=11%  Similarity=0.094  Sum_probs=81.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCC----c--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDR----V--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~----~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      ..+...|++++|+.+|++++.....    .  ..++.++|.++..+|++++|+.+....++.+........   ......
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~  575 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL---PMHEFL  575 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc---cHHHHH
Confidence            4456789999999999999865322    1  246788999999999999999996665554332110000   000001


Q ss_pred             HhHHHHHHHHhch--------hhHHhh----cC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          136 AGVKTKMARSQGK--------KIQITV----EQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L----~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                      ...++.++...|+        ...+.+    .+ ....++..+|.++...|++++|...+.+++.+.....
T Consensus       576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~  646 (903)
T PRK04841        576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR  646 (903)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence            1122333333333        111111    12 2345777899999999999999999999998876653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00053  Score=69.68  Aligned_cols=73  Identities=22%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      +|.++|..+..|.|.+..|+++.+++.++..-++|++++|+... ++-||.+++....|++|+..|+++..+..
T Consensus        36 aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   36 AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLR  109 (284)
T ss_pred             HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999999999 99999999999999999999999977644

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.34  E-value=0.0016  Score=61.06  Aligned_cols=94  Identities=19%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                      ..-|.++...|+.++|++.+.++                                     +.+-|..+.+|+|.+.+|.-
T Consensus        47 El~~valaE~g~Ld~AlE~F~qa-------------------------------------l~l~P~raSayNNRAQa~RL   89 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQA-------------------------------------LCLAPERASAYNNRAQALRL   89 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHH-------------------------------------HHhcccchHhhccHHHHHHH
Confidence            34588889999999999885443                                     45678889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          172 QNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       172 qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      +|+.++|+.-+.+||++.-+.-.     ++..|.+|..+|+-+.|..-|+.+-++-
T Consensus        90 q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen   90 QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            99999999999999999754432     5678999999999999999999988863

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.26  E-value=0.017  Score=59.25  Aligned_cols=168  Identities=13%  Similarity=0.057  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------HHHHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIE-------EEIELLQNK  125 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLe-------eAi~lL~~~  125 (575)
                      .++..+...+..|++++|+..|++.....|..   ..++..++.++.+.+++++|+.....=+.       .+-..+-..
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            34455566789999999999999999887765   46899999999999999999988111000       000111111


Q ss_pred             H------HhhHHHHHH----HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          126 L------KNIEEGIAF----AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS  187 (575)
Q Consensus       126 L------~l~~~a~a~----~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe  187 (575)
                      +      .....+...    +...........+        .++..++..-..-=..+|..|.+.|.+-.|+..++++++
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e  195 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE  195 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            1      000111111    1111111111111        112222222222335567999999999999999999999


Q ss_pred             hCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          188 LGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       188 idPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      -.|+...    +.-|..+|..+|-.++|...-. +|..+..
T Consensus       196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p  235 (254)
T COG4105         196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYP  235 (254)
T ss_pred             ccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence            9988774    6788899999999999988754 5555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.22  E-value=0.0032  Score=57.84  Aligned_cols=64  Identities=22%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .++..++..+...|++++|+..+++++.++|-+.. +..|-.+|..+|+..+|+..|+++...-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            36778899999999999999999999999999999 99999999999999999999999877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.22  E-value=0.0044  Score=68.58  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=102.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      .+..+.++..-+++-.+||+++|+-+.||.-||.-  ...-..||++++.++++.+...++........+.     ....
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~-----~~e~  249 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH-----FWEA  249 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc-----hhhh
Confidence            34667899999999999999999998888766542  3455788898888877777666665431111000     0000


Q ss_pred             HHHhchhhHHhhcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          143 ARSQGKKIQITVEQEK--SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~--~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                               +.....+  .-+-..||.+..++|+.+||+++|+..++..|.  +.. +.||..+|+.+++|+++..++.+
T Consensus       250 ---------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  250 ---------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             ---------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                     0000111  225577999999999999999999999998875  334 89999999999999999999988


Q ss_pred             HH
Q 038048          218 VK  219 (575)
Q Consensus       218 AL  219 (575)
                      .=
T Consensus       321 Yd  322 (539)
T PF04184_consen  321 YD  322 (539)
T ss_pred             hc
Confidence            63

The molecular function of this protein is uncertain.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0046  Score=63.89  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             cCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .+.+.-....+.+.++.+ |..+.....||.+-++.|+.+.|..++... +..-..                        
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v-ek~~~k------------------------  244 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV-EKVTQK------------------------  244 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh------------------------
Confidence            456666667777777766 344556677777777777777777664321 100000                        


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                            +.--.....+..|.+.+|.-+++|.+|...|.+.+..||.++. .+|-|.|++-.|+..+|++.++.++.+.|.
T Consensus       245 ------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  245 ------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             ------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence                  0000112337788999999999999999999999999999999 889999999999999999999999999986


Q ss_pred             CC
Q 038048          225 RQ  226 (575)
Q Consensus       225 n~  226 (575)
                      ..
T Consensus       319 ~~  320 (366)
T KOG2796|consen  319 HY  320 (366)
T ss_pred             cc
Confidence            54

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.17  E-value=0.00065  Score=47.21  Aligned_cols=33  Identities=36%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            477888899999999999999999999888854

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.11  E-value=0.055  Score=58.53  Aligned_cols=70  Identities=11%  Similarity=0.035  Sum_probs=57.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------CCCCHH-HHHHHHHHHH
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-------------------------------GVDMNK-QCNLAICLMH  204 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-------------------------------dPdn~~-~~NLA~iy~~  204 (575)
                      +++.+...++.=+.+.|++++|..+.+++|+.                               .|+++. +..||.+|.+
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k  340 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK  340 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            34556667777788888888888777766653                               477777 7899999999


Q ss_pred             cCCHHHHHHHHHHHHHHcCCCC
Q 038048          205 MNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       205 qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+.|.+|..+|+.+++..|+..
T Consensus       341 ~~~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         341 NKLWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             hhHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999988653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.05  E-value=0.01  Score=66.02  Aligned_cols=124  Identities=23%  Similarity=0.203  Sum_probs=101.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      ..+.+.|..++....+.-|+..-.++..|.++...|+.++|++.+..+++.+.. +.+.                     
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql---------------------  303 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQL---------------------  303 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhH---------------------
Confidence            456788999999999999998888899999999999999999997665432111 1000                     


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCH-------HHHHHHHHH
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRV-------TEAKSLLQA  217 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~-------eEAi~lLek  217 (575)
                                 ..-.++.+|+++.-+++|++|..+|.+.++.+.-...  .|-.|.+|...|+.       ++|..+|.+
T Consensus       304 -----------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~  372 (468)
T PF10300_consen  304 -----------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK  372 (468)
T ss_pred             -----------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence                       1227899999999999999999999999997776555  67889999999999       899999988


Q ss_pred             HHHHcC
Q 038048          218 VKISAG  223 (575)
Q Consensus       218 ALel~P  223 (575)
                      +-....
T Consensus       373 vp~l~~  378 (468)
T PF10300_consen  373 VPKLKQ  378 (468)
T ss_pred             HHHHHh
Confidence            877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.02  E-value=0.014  Score=65.67  Aligned_cols=127  Identities=17%  Similarity=0.016  Sum_probs=94.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      ...+-..|++++|+.+..+||...|...+.++..|.+|...|++++|.+....+                          
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~A--------------------------  254 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEA--------------------------  254 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------------
Confidence            344456789999999999999999999999999999999999999999873221                          


Q ss_pred             HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------H--HHHHHHHHHcCCHHH
Q 038048          141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--------Q--CNLAICLMHMNRVTE  210 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--------~--~NLA~iy~~qGr~eE  210 (575)
                                 -.++..+--+-...+-.+++.|+.++|+.....-..-+-+...        |  ..-|.+|..+|++..
T Consensus       255 -----------r~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  255 -----------RELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             -----------HhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                       1223333334445567788889999999888776554421111        2  246999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 038048          211 AKSLLQAVKISAGN  224 (575)
Q Consensus       211 Ai~lLekALel~P~  224 (575)
                      |+..|..+++..-+
T Consensus       324 ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  324 ALKRFHAVLKHFDD  337 (517)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988887543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.98  E-value=0.0032  Score=73.97  Aligned_cols=120  Identities=10%  Similarity=-0.043  Sum_probs=95.2

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      ++..++.-.|+..|+.|++.+|++..++.+||.+|...|+|.-|++.+.+                              
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k------------------------------  621 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK------------------------------  621 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh------------------------------
Confidence            34456777888888888888888888888888888888888888877433                              


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                             +..++|.+.-+.+..+.+...+|+|.+|+..+...+.....-.. ...||.++++.-.---+-.++.++..
T Consensus       622 -------As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd  692 (1238)
T KOG1127|consen  622 -------ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD  692 (1238)
T ss_pred             -------hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence                   35779999999999999999999999999999999988887777 88899999876544444444444444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.97  E-value=0.0093  Score=65.04  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=75.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      ...+++..++..+|+.++.++|+..|.+...+...|..+++.++++.|+.+.+.                          
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~--------------------------  259 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK--------------------------  259 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------
Confidence            344556677889999999999999999999999999999999999999988332                          


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYR  183 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yr  183 (575)
                                 ++.+.|+.-..|+.|+.+|..+|+|++|+..+.
T Consensus       260 -----------av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  260 -----------AVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             -----------HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence                       367789999999999999999999999997665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0062  Score=62.39  Aligned_cols=117  Identities=17%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      .++..-|+-++.+|+|.||+..|..+    +..+....-               -..-|...=++++......+.|...+
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreA----i~~l~~L~l---------------kEkP~e~eW~eLdk~~tpLllNy~QC  239 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREA----IICLRNLQL---------------KEKPGEPEWLELDKMITPLLLNYCQC  239 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHH----HHHHHHHHh---------------ccCCCChHHHHHHHhhhHHHHhHHHH
Confidence            46677899999999999999986554    333333220               00011111234445556689999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ++..|+|-++++.-..+|..+|+|.. ++..|.+....=+.+||.+-|.++|+++|.
T Consensus       240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            99999999999999999999999999 999999999999999999999999999885

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.92  E-value=0.0015  Score=45.54  Aligned_cols=31  Identities=16%  Similarity=0.091  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++++|.+|..+|++++|+..|+++++++|++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            7899999999999999999999999999963

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.91  E-value=0.0021  Score=44.32  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++++|.+|..+|++++|+.+|++++.++|+|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            7899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.049  Score=57.15  Aligned_cols=49  Identities=16%  Similarity=0.046  Sum_probs=45.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR  111 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~  111 (575)
                      ..+-.++..+|...|..++...|.+..+...||.+|...|+.++|..++
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL  191 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAIL  191 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHH
Confidence            3466789999999999999999999999999999999999999999884

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.82  E-value=0.002  Score=46.25  Aligned_cols=28  Identities=46%  Similarity=0.730  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                      ++.+||.+|..+|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888886654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.81  E-value=0.0029  Score=63.87  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=72.2

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++.+.|+-+.+++.||.-+...|+|+.|...|.-.++++|.+.- ..|.|+.+.--||+.-|..-+.+..+.+|+|+
T Consensus        91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            46789999999999999999999999999999999999999998 99999999999999999999999999999876

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.81  E-value=0.016  Score=67.68  Aligned_cols=124  Identities=13%  Similarity=0.075  Sum_probs=101.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      +..+++.+|.+...+.++..|+...+..--|.++.++|+.+||..+....                              
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~------------------------------   69 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL------------------------------   69 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh------------------------------
Confidence            34467899999999999999999998888899999999999999762110                              


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                             -...+++...+..|-.+|.++|++++|..+|++++..+|. .. ++.|=++|.+-+.|.+=.+.--+..+..|
T Consensus        70 -------~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~p  141 (932)
T KOG2053|consen   70 -------YGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFP  141 (932)
T ss_pred             -------ccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                   1234566778889999999999999999999999999999 66 88999999999998876655555555666


Q ss_pred             CCC
Q 038048          224 NRQ  226 (575)
Q Consensus       224 ~n~  226 (575)
                      +++
T Consensus       142 k~~  144 (932)
T KOG2053|consen  142 KRA  144 (932)
T ss_pred             ccc
Confidence            653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.048  Score=61.54  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-HHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-EEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-eAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +.+..++++++|+.-..+.+...|+...+.+---.++.++++|++|+........ .....+            ++.+.+
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~------------~fEKAY   87 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF------------FFEKAY   87 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh------------hHHHHH
Confidence            4556678999999999999999999999988888999999999999966222110 000000            112222


Q ss_pred             HHHHHhch----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Q 038048          141 KMARSQGK----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---------------------------  189 (575)
Q Consensus       141 ~al~sqg~----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---------------------------  189 (575)
                      ..|+....    +..-.+++.+..++..-|.+++++|+|++|...|+..++-+                           
T Consensus        88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            22221111    11123467777788888999999999999999999874422                           


Q ss_pred             ---CC-CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          190 ---VD-MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       190 ---Pd-n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                         |+ ... .+|.|.+++..|+|.+|+++|++++.+..
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~  206 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICR  206 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence               33 334 78999999999999999999999966543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.46  Score=49.49  Aligned_cols=69  Identities=22%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHHcCCCC
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK-SLLQAVKISAGNRQ  226 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi-~lLekALel~P~n~  226 (575)
                      ....++.++.+.+.+|+|++|+..++.||.-++++++ ..|+-.+-..+|.-.++. .++.+....+|+..
T Consensus       206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            3447777889999999999999999999999999998 899999888888887765 45566666667654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.54  E-value=0.011  Score=63.39  Aligned_cols=132  Identities=13%  Similarity=-0.021  Sum_probs=91.3

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      +-.+.+++++++|++|++..-++      ..++..||.+|.+..++++|+-+..++++....+--..             
T Consensus       133 lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d-------------  199 (518)
T KOG1941|consen  133 LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD-------------  199 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc-------------
Confidence            44456778888888887653322      13567788888888888888877555433211100000             


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH---H-HHHHHHHHHHcCCHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMN---K-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~---~-~~NLA~iy~~qGr~eEA  211 (575)
                      +..              .+...+++.|+.+|..+|+..+|.++-++|.++.   -|-+   . +.-+|.||...|+.+.|
T Consensus       200 ~~~--------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  200 WSL--------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             hhH--------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence            000              0112378999999999999999999999998874   2222   2 66899999999999999


Q ss_pred             HHHHHHHHHHcC
Q 038048          212 KSLLQAVKISAG  223 (575)
Q Consensus       212 i~lLekALel~P  223 (575)
                      ..-|++|.....
T Consensus       266 f~rYe~Am~~m~  277 (518)
T KOG1941|consen  266 FRRYEQAMGTMA  277 (518)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.49  E-value=0.0047  Score=42.15  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      +++++|.+|..+|++++|+..|+++++..|+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            66788888888888888888888888888763

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.0093  Score=63.80  Aligned_cols=126  Identities=20%  Similarity=0.105  Sum_probs=91.0

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      .+...|+..|+.+++-.+..+.... ....-+|.++..+|+|++|+..|....                           
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~---------------------------   84 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLM---------------------------   84 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHh---------------------------
Confidence            4567799999999998887765443 466678999999999999998753311                           


Q ss_pred             HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhC------------CCCHH-H
Q 038048          143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA--------------LSLG------------VDMNK-Q  195 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA--------------Leid------------Pdn~~-~  195 (575)
                                .-+.-+...+.||+.+++-+|.|.+|...-.+|              .+++            .|..+ .
T Consensus        85 ----------~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Edq  154 (557)
T KOG3785|consen   85 ----------NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQ  154 (557)
T ss_pred             ----------ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHH
Confidence                      112334457788888888888888887765543              1111            12223 4


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          196 CNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       196 ~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..||.+....-.|.||+..|.++|..+|+..
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~  185 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYI  185 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            5778887888889999999999999888754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.35  E-value=0.019  Score=58.03  Aligned_cols=121  Identities=14%  Similarity=0.035  Sum_probs=94.9

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      =..-|.--|.+++.+.|+.+++++.||.-+...|+|+.|.+.+..                                   
T Consensus        80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds-----------------------------------  124 (297)
T COG4785          80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS-----------------------------------  124 (297)
T ss_pred             HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhh-----------------------------------
Confidence            345677778899999999999999999999999999999987432                                   


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH-HHHHHHHHcCCCC
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS-LLQAVKISAGNRQ  226 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~-lLekALel~P~n~  226 (575)
                        .++++|...-++.|.|..+.--|+|.-|..-+.+-.+-+|+++- ..-|=..-.+. ++.+|.. +.+++...+.+-|
T Consensus       125 --~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~tnL~qR~~~~d~e~W  201 (297)
T COG4785         125 --VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAKTNLKQRAEKSDKEQW  201 (297)
T ss_pred             --HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHHHHHHHHHHhccHhhh
Confidence              25679999999999999999999999999999999999999996 44333333333 4555554 4456666555555


Q ss_pred             C
Q 038048          227 M  227 (575)
Q Consensus       227 ~  227 (575)
                      +
T Consensus       202 G  202 (297)
T COG4785         202 G  202 (297)
T ss_pred             h
Confidence            3

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.31  E-value=0.0051  Score=67.66  Aligned_cols=95  Identities=18%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ..+-.++++.|+.+|-+||+++|+.+..+-+-+.++.+.+.|-.|+.-..                              
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~------------------------------   62 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDAL------------------------------   62 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHH------------------------------
Confidence            34556778888888888888888777666677777777777777775422                              


Q ss_pred             HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                             ++++++|....+|+.-|.+.+.++++.+|...|+....+.|+.+.
T Consensus        63 -------kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   63 -------KAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             -------hhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence                   235566777777777778888888888888888888888887776

>smart00028 TPR Tetratricopeptide repeats

Probab=96.29  E-value=0.0059  Score=39.04  Aligned_cols=32  Identities=38%  Similarity=0.569  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      +++++|.+|..+|++++|+.+|+++++++|++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            67788888888888888888888888887753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.25  E-value=0.0064  Score=66.94  Aligned_cols=91  Identities=21%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT  229 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~  229 (575)
                      +|.++|+.+..+.+.+.++.+.++|..|+.-+.+|++++|.... ++.-|.+.+..+++.+|...|++...+.|++.   
T Consensus        30 aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~---  106 (476)
T KOG0376|consen   30 AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP---  106 (476)
T ss_pred             HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH---
Confidence            46789999999999999999999999999999999999999999 99999999999999999999999999999865   


Q ss_pred             hHHHHHHHHHHHHHH
Q 038048          230 SYSRSFERAIQMLTE  244 (575)
Q Consensus       230 ~~l~slerA~elL~e  244 (575)
                      .+.+.+.....+..+
T Consensus       107 ~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen  107 DATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334555555555554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.25  E-value=0.11  Score=51.76  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=61.6

Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      --++...+..|+.+.+..+++.+|...+++..+.+|..-.   +..+|.+|..+|++++|+..|+.++...|.
T Consensus       120 fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         120 FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            3466778888999999999999999999999999987664   888999999999999999999999998874

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.19  E-value=0.05  Score=55.95  Aligned_cols=101  Identities=14%  Similarity=0.010  Sum_probs=79.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChh-
Q 038048          156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTS-  230 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~-  230 (575)
                      ..++..+++-|...++.|+|++|+..|+.+...+|..+-    ++.|+.++.+.+++++|+..+++.+.+.|.++..+- 
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            456779999999999999999999999999999998773    889999999999999999999999999998875431 


Q ss_pred             -HHHH-------------HHHHHHHHHHhccccccCcccc
Q 038048          231 -YSRS-------------FERAIQMLTELESPSVLKLTEL  256 (575)
Q Consensus       231 -~l~s-------------lerA~elL~ele~al~~~p~~~  256 (575)
                       +++.             ...+.+.+..+...+...|+..
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence             1211             2335555556665555555544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.012  Score=60.06  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      .+..+.++.|+..|-+||.++|..+..+.|-|..|++..+++.+..--.                               
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcr-------------------------------   68 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCR-------------------------------   68 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHH-------------------------------
Confidence            3456678999999999999999999999999999999999998886522                               


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                            .++.+.|+...+++.||..++....|++|+..+++|+.+.
T Consensus        69 ------ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   69 ------RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             ------HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence                  3456777878899999999999999999999999997653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.11  E-value=0.1  Score=51.87  Aligned_cols=121  Identities=13%  Similarity=0.043  Sum_probs=78.3

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      .+.+ +.+...++.+..++....   +-..+|..+.+.|++++|+......+....+   .             ++.   
T Consensus        66 ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e-------------~lk---  125 (207)
T COG2976          66 AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---E-------------NLK---  125 (207)
T ss_pred             cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---H-------------HHH---
Confidence            3444 444444444555544432   3456788899999999998774332211000   0             000   


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                                     .-+-.+||.+..++|++++|+..+....  +++...  ..-.|.+|+..|+-++|+..|+++++.
T Consensus       126 ---------------~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         126 ---------------ALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             ---------------HHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence                           1155789999999999999998776532  233333  445799999999999999999999998


Q ss_pred             cCC
Q 038048          222 AGN  224 (575)
Q Consensus       222 ~P~  224 (575)
                      .++
T Consensus       189 ~~s  191 (207)
T COG2976         189 DAS  191 (207)
T ss_pred             cCC
Confidence            744

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.05  E-value=0.011  Score=44.03  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++.||.+|..+|++++|+.+|+++++.+|++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            67899999999999999999999999999876

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.01  E-value=0.0055  Score=65.13  Aligned_cols=72  Identities=13%  Similarity=-0.023  Sum_probs=55.0

Q ss_pred             HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      |.++|....+|-..|.+++++++...|+.-|..|++|+||... +---|.+...+|++++|..+|..+++++-
T Consensus       141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            4567777777777788888888888888888888888888777 66667777777888888888887777643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.96  E-value=0.014  Score=40.30  Aligned_cols=30  Identities=13%  Similarity=0.055  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ++.+|.+|..+|++++|+.+|+++++++|+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            678999999999999999999999999985

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.92  E-value=0.016  Score=41.39  Aligned_cols=28  Identities=39%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                      ++++||.+|..+|++++|+.++++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            5666777777777777777777776665

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.89  E-value=0.1  Score=48.42  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=65.9

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      ..++.++-+++|..-+++|+...-..            ...+..|+.++..+|+|++++..-.                 
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~-----------------   79 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSAD-----------------   79 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-----------------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHH-----------------
Confidence            44578899999999999998753221            2357889999999999999997621                 


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS  187 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe  187 (575)
                       .++.|+++.+.+....|+        -.+.+.++.|.++..+|+.++|+..|+.+-+
T Consensus        80 -~aL~YFNRRGEL~qdeGk--------lWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   80 -RALRYFNRRGELHQDEGK--------LWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             -HHHHHHHHH--TTSTHHH--------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             -HHHHHHhhccccccccch--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             122334444333222221        1133678888899999999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.87  E-value=0.34  Score=52.83  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             cCCCCCcHHHHHH--HHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH------
Q 038048           49 KVPSGDSPYVRAK--HIQLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIEEEI------  119 (575)
Q Consensus        49 ~~ps~d~~yarA~--~l~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLeeAi------  119 (575)
                      .+.+...+++...  ...+++|+++.|..-|+..+. +|..- -.+.+|=+.-..+|..+.|+.+-..+.+.+.      
T Consensus       113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~  191 (531)
T COG3898         113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA  191 (531)
T ss_pred             hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence            4455566666533  445788999999998876654 33321 1234444455667888888877433333322      


Q ss_pred             -HHHHHHHH--hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH---H--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048          120 -ELLQNKLK--NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR---I--LGNLAWAYMQQNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       120 -~lL~~~L~--l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~---a--~~nLG~aY~~qGryeEAe~~yrkALeidPd  191 (575)
                       .+++....  ....++.+    .+..     +....+.++-.+   +  +.--+.... .-+...|...-.+++++.|+
T Consensus       192 ~AtLe~r~~~gdWd~AlkL----vd~~-----~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pd  261 (531)
T COG3898         192 RATLEARCAAGDWDGALKL----VDAQ-----RAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPD  261 (531)
T ss_pred             HHHHHHHHhcCChHHHHHH----HHHH-----HHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCc
Confidence             22222221  00000000    0000     001111222111   1  111112222 23477888888999999999


Q ss_pred             CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC---hhHHHHHHHHHHHHHHhccccccCcccccc
Q 038048          192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD---TSYSRSFERAIQMLTELESPSVLKLTELEV  258 (575)
Q Consensus       192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~---~~~l~slerA~elL~ele~al~~~p~~~e~  258 (575)
                      ... ..--+.+|.+.|+..++-.+++.+.+..|. +..   ..+..+.+.+..-++.+.....++|+..+.
T Consensus       262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes  331 (531)
T COG3898         262 LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAES  331 (531)
T ss_pred             cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHH
Confidence            988 777888999999999999999999988773 210   112233344555555555555566655543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.25  Score=50.99  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=81.0

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK  127 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~  127 (575)
                      -..|.+|...+...+++++|...+.+|++...++.      .++...|.++.+...+.|+..++.               
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~e---------------   95 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYE---------------   95 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------
Confidence            34566777777888888888888888875544331      234444455555555555555432               


Q ss_pred             hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHH
Q 038048          128 NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAI  200 (575)
Q Consensus       128 l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-------~~NLA~  200 (575)
                                +....|.+.|       .|+.+..-..-+-=..+.-+.++|+++|++++.+-.....       +-..++
T Consensus        96 ----------KAs~lY~E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen   96 ----------KASELYVECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             ----------HHHHHHHHhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence                      2233333333       2333332223333345666888888999888887543321       235688


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 038048          201 CLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       201 iy~~qGr~eEAi~lLekALe  220 (575)
                      +|....+++||-..+.+-..
T Consensus       159 ~lVrl~kf~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  159 VLVRLEKFTEAATAFLKEGV  178 (308)
T ss_pred             HhhhhHHhhHHHHHHHHhhh
Confidence            89999999998887776544

>PRK10941 hypothetical protein; Provisional

Probab=95.59  E-value=0.11  Score=54.01  Aligned_cols=66  Identities=15%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+.||-.+|.+.++++.|+.+.+.+|.+.|+++. +-..|.+|.++|.+..|..-|+..++..|+++
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            7788899999999999999999999999999999 89999999999999999999999999999876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.58  E-value=0.3  Score=57.22  Aligned_cols=155  Identities=12%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH---------------H---
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA---------------R---  111 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~---------------~---  111 (575)
                      ..+++..-++...+++.-|..++|+.+|++.-.-        -.|-.+|..+|.+++|.++               |   
T Consensus       796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~  867 (1416)
T KOG3617|consen  796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY  867 (1416)
T ss_pred             HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence            3445555667667777788899999999876331        2345678888999999887               1   


Q ss_pred             ---hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          112 ---SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL  186 (575)
Q Consensus       112 ---~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL  186 (575)
                         .+.++.+++.+++.-.       -..+...++.+...  +..+. .-.+...|---|.-+...|+.+.|+.+|..|-
T Consensus       868 Lear~Di~~AleyyEK~~~-------hafev~rmL~e~p~~~e~Yv~-~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGV-------HAFEVFRMLKEYPKQIEQYVR-RKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCC-------hHHHHHHHHHhChHHHHHHHH-hccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence               1111111221111100       00011111111111  01111 12233566677788888888888888888664


Q ss_pred             Hh---------------------CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          187 SL---------------------GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       187 ei---------------------dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      ..                     .-.+.. -|.||..|-..|++.+|+..|-+|-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            42                     233444 67999999999999999999987644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.31  Score=50.30  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                      ..-+..|...++|++|..+..++.+    -++..        ..+...                   +.+|-..|.+..+
T Consensus        35 ekAAvafRnAk~feKakdcLlkA~~----~yEnn--------rslfhA-------------------AKayEqaamLake   83 (308)
T KOG1585|consen   35 EKAAVAFRNAKKFEKAKDCLLKASK----GYENN--------RSLFHA-------------------AKAYEQAAMLAKE   83 (308)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHH----HHHhc--------ccHHHH-------------------HHHHHHHHHHHHH
Confidence            3347889999999999987544322    11111        000000                   1255566777888


Q ss_pred             cCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          172 QNNFEMAEQYYRKALSLG-----VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       172 qGryeEAe~~yrkALeid-----Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +..+.|++.+|++|..+.     |+... ...-|-=..+.-++++|+++|++++.+-..+
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            888999999999998875     55555 5555666788899999999999999876543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.12  Score=55.20  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc-HHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK-SRILGNLAWA  168 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~-~~a~~nLG~a  168 (575)
                      -+..-|+-|++..+|..|+..|...+..                                  ---+|+. +..|.|.+.+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~----------------------------------kc~D~dlnavLY~NRAAa  128 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKK----------------------------------KCADPDLNAVLYTNRAAA  128 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhh----------------------------------cCCCccHHHHHHhhHHHH
Confidence            3455699999999999999987664321                                  0113332 3488999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .+.+|+|..|+.-..+|+.++|.+.. ++.=|.|+..+.++++|..+++..+.++-
T Consensus       129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            99999999999999999999999999 99999999999999999999998877653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.47  Score=48.73  Aligned_cols=65  Identities=17%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          161 ILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDMNK-------QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       161 a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn~~-------~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+..+|.+|..- .++++|+.+|++|-+..-....       ++..|..-...|+|.+|+.+|+++....-++
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            556788888876 9999999999999987654332       2334566678999999999999998866554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.26  E-value=0.67  Score=50.46  Aligned_cols=64  Identities=25%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             cCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          155 EQEKSRILGNLAWAYMQQ---------NNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~q---------GryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                      .+.+++++..+|.+|.++         ...++|+..|+++.+++|+...-.|++.++.-.|.-.+...-++++
T Consensus       213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i  285 (374)
T PF13281_consen  213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKI  285 (374)
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHH
Confidence            556677888888776543         3578999999999999987766888888888888765555444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.18  E-value=0.055  Score=58.24  Aligned_cols=62  Identities=19%  Similarity=0.166  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------K-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      ++..||.+|..+.++++|..+..+|+++-....          . .+.|+.+|..+|+..+|.++.+++.++.
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            889999999999999999999999999854322          1 4689999999999999999999998864

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.18  E-value=0.28  Score=48.94  Aligned_cols=93  Identities=15%  Similarity=0.065  Sum_probs=69.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCC-cH--HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDR-VD--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~-~~--~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      .+.-.+++++|+..++.++....+ +.  -+-..||.+..++|++|+|+......-                        
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~------------------------  153 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK------------------------  153 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc------------------------
Confidence            345678999999999998854322 22  256789999999999999998843321                        


Q ss_pred             HHHHHHhchhhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          140 TKMARSQGKKIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                     ++... ......|+++..+|+-++|...|.+|++.+++...
T Consensus       154 ---------------~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         154 ---------------EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             ---------------cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence                           11112 24456799999999999999999999999877664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.16  E-value=0.95  Score=50.54  Aligned_cols=161  Identities=13%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH--
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI--  133 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~--  133 (575)
                      ..++-+.....+++...|...|++||..+-.+...+...+.+-++.....-|..+..+++.    ++-..-.+.+.-.  
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt----~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT----ILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH----hcchHHHHHHHHHHH
Confidence            3344444445678899999999999999988888888889988888888888877433322    2221111111000  


Q ss_pred             -HHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Q 038048          134 -AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAK  212 (575)
Q Consensus       134 -a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi  212 (575)
                       ..++|..-+..-.  ..=+...|+ ..+|+..-..-++.+..+.|..+|++-+-.+|+...++..|..-.+-|+..-|.
T Consensus       151 EE~LgNi~gaRqif--erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  151 EEMLGNIAGARQIF--ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHHhcccHHHHHHH--HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence             1111111111100  011222332 234544445555555555566666665555555554555555555555555555


Q ss_pred             HHHHHHHHHcC
Q 038048          213 SLLQAVKISAG  223 (575)
Q Consensus       213 ~lLekALel~P  223 (575)
                      ..|++|++.-.
T Consensus       228 ~VyerAie~~~  238 (677)
T KOG1915|consen  228 SVYERAIEFLG  238 (677)
T ss_pred             HHHHHHHHHhh
Confidence            55555555443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.18  Score=52.57  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             hhh-HhhcCCCCCcHHHH-HHHHHHHcCChHHHHHHHHHHHHc----C--CCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048           43 IFH-VIHKVPSGDSPYVR-AKHIQLIDKDPSRAVSLFWAAINA----G--DRVDSALKDMAVVMKQLDRSDEAIEARSGR  114 (575)
Q Consensus        43 ~y~-~~~~~ps~d~~yar-A~~l~l~~kd~eeAi~lf~kAL~l----~--p~~~~Al~nLA~iy~qqGrydEAie~~~ga  114 (575)
                      .|+ ++.+.|..+..+.. .++++..-||.+.|..+|+.+-+.    +  ........+++.+|.-+++|.+|...+.. 
T Consensus       199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~-  277 (366)
T KOG2796|consen  199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE-  277 (366)
T ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh-
Confidence            344 45566677777765 678888999999999999954322    2  22234677889999999999888876432 


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          115 IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       115 LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                                          .+..+|.++.+.+|-|.+++-.|+..+|++..+.++.+.|....
T Consensus       278 ------------------------------------i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  278 ------------------------------------ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             ------------------------------------ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence                                                24568888889999999999999999999999999999997663


Q ss_pred             ----HHHHHHHH
Q 038048          195 ----QCNLAICL  202 (575)
Q Consensus       195 ----~~NLA~iy  202 (575)
                          .+||-.+|
T Consensus       322 ~es~~~nL~tmy  333 (366)
T KOG2796|consen  322 HESVLFNLTTMY  333 (366)
T ss_pred             hhhHHHHHHHHH
Confidence                56776554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.15  E-value=0.011  Score=62.84  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      +++.++|+...-|-..|.+...+|++++|..+++.|.+++=+-..-.-|-.+.-..+..++-...+++..+
T Consensus       173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence            35666777777777777777777777777777777776654433322333444444444444444444444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.07  E-value=0.034  Score=37.80  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ++++|.+|..+|++++|+.+|+++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            678999999999999999999999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.06  E-value=0.043  Score=39.28  Aligned_cols=29  Identities=14%  Similarity=-0.015  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      +.+||.+|..+|++++|+.+|+++|.+..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999776643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.01  E-value=0.081  Score=58.75  Aligned_cols=131  Identities=17%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR-IEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga-LeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      +...+...+..--..++....+.+.++.-.+..++-.|++..|.+..... +.                           
T Consensus       217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---------------------------  269 (696)
T KOG2471|consen  217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH---------------------------  269 (696)
T ss_pred             HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---------------------------
Confidence            33444555555555666666677778888889999999999999873211 00                           


Q ss_pred             HHhchhhHHhhcCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---------CCHH-HHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSR--ILGNLAWAYMQQNNFEMAEQYYRKALS---------LGV---------DMNK-QCNLAICL  202 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~--a~~nLG~aY~~qGryeEAe~~yrkALe---------idP---------dn~~-~~NLA~iy  202 (575)
                      .+.|    -.+.|.-..  .++|||.+++++|.|.-+..+|.+||+         +.|         .... .||.|..|
T Consensus       270 ~~~g----~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~  345 (696)
T KOG2471|consen  270 KEAG----GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLY  345 (696)
T ss_pred             cccC----ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHH
Confidence            0000    011222222  679999999999999999999999996         112         1223 78999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          203 MHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       203 ~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +..|++-+|.++|.++.+....++
T Consensus       346 Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  346 LHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             HhcCCcHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999876665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.00  E-value=0.36  Score=50.04  Aligned_cols=123  Identities=7%  Similarity=-0.058  Sum_probs=87.9

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ-LDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-qGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      ..+..+.|...|.+|++........|...|.+-.. .++.+-|..++...                              
T Consensus        13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~g------------------------------   62 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERG------------------------------   62 (280)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHH------------------------------
T ss_pred             HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------------------
Confidence            33458899999999986555566788888888666 45555577763221                              


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K---QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~---~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                             +..-|++...|......+..+|+.+.|..+|++++..-|... .   +......-...|+++....+.+++.+
T Consensus        63 -------lk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   63 -------LKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             -------HHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             -------HHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   223455666777777888899999999999999998877766 2   55677777888999999999999999


Q ss_pred             HcCCC
Q 038048          221 SAGNR  225 (575)
Q Consensus       221 l~P~n  225 (575)
                      ..|++
T Consensus       136 ~~~~~  140 (280)
T PF05843_consen  136 LFPED  140 (280)
T ss_dssp             HTTTS
T ss_pred             Hhhhh
Confidence            87763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.91  E-value=0.061  Score=59.69  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=82.3

Q ss_pred             HHHcCChHHHHHHHHH-HHHcCCC---c---HH--HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWA-AINAGDR---V---DS--ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~k-AL~l~p~---~---~~--Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ....|++.+|.+++.. -|...+.   .   ..  +++|||.|+++.|.|.-++.++.+++...-..+...++       
T Consensus       250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~-------  322 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK-------  322 (696)
T ss_pred             HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC-------
Confidence            3456777777766643 2333333   1   12  46899999999999999999987765411111111110       


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                                  +.+.........-.++||.|..|+..|+.-.|.++|.+|+...-.|+. |..||.+.+.
T Consensus       323 ------------~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  323 ------------PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ------------CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                        000111112233458899999999999999999999999999999999 9999988753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.59  E-value=2.4  Score=52.48  Aligned_cols=42  Identities=14%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             hhhhh-HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038048           41 GDIFH-VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN   82 (575)
Q Consensus        41 ae~y~-~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~   82 (575)
                      ++-|. .+...|+....+++-...++.-++.++|.+.+++||.
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence            34454 4666677777777765556677889999999999985

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=1.2  Score=46.95  Aligned_cols=43  Identities=21%  Similarity=0.076  Sum_probs=37.3

Q ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          182 YRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       182 yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +++.+..+|++.. .+.||..|...|++++|...|-.++..+-.
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            3455667899999 999999999999999999999999987654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.56  E-value=0.46  Score=55.77  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=65.2

Q ss_pred             HHHcCChHHHHHHHHHH----------HHcCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAA----------INAGDRV----------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kA----------L~l~p~~----------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~  123 (575)
                      ..-.+|.+.|+++|+++          |..+|..          ...|.--|.-+...|+.|.|+.+|..+-+    .+.
T Consensus       868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----~fs  943 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----YFS  943 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----hhh
Confidence            35567899999999975          2233332          22344456677778888888877544311    000


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                      .. +..    -+.++..++.       +|.-...+-.+.|.||..|...|++.+|+.+|.+|-.+
T Consensus       944 ~V-rI~----C~qGk~~kAa-------~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  944 MV-RIK----CIQGKTDKAA-------RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             he-eeE----eeccCchHHH-------HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            00 000    0111111111       13334555668999999999999999999999987654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=4.1  Score=42.08  Aligned_cols=171  Identities=19%  Similarity=0.189  Sum_probs=103.0

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN----AGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---  119 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~----l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---  119 (575)
                      +......-|.+|+.++...++++.|=..|.+|-.    .+..+  ...|...+++|. .++.++|+.+...+++.--   
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence            3333344567778888888888888777777643    23322  234666666664 4488888888544433211   


Q ss_pred             -------------HHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          120 -------------ELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL  186 (575)
Q Consensus       120 -------------~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL  186 (575)
                                   ++++..+.....++..+...++.+...      +....-...+.-.+..-..+++|.+|+..|+++.
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         111111111111222222222221100      0011112255566777788999999999999998


Q ss_pred             HhCCCCHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          187 SLGVDMNK--------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       187 eidPdn~~--------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .-.-+|.-        .+.-|.|++-..+.--|...+++..+++|.-.
T Consensus       182 ~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  182 RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            87766663        23568888888999999999999999999654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.49  E-value=0.064  Score=38.14  Aligned_cols=32  Identities=25%  Similarity=0.078  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.|||.+|..+|++++|+.++++++.+...-.
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   36 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEALEIRERLL   36 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence            68999999999999999999999999876543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.44  E-value=0.12  Score=40.92  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      .++.||..+.++|+|++|..+.+.+|+++|+|..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            4567777777778888888877777777777776

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.43  E-value=0.78  Score=46.12  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH-------HHHHhCCC--C----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYR-------KALSLGVD--M----NK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yr-------kALeidPd--n----~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .++..+||+|..+|+-++...+++       +|++....  .    .. ++-+|.+..+.|++++|+.+|.+++...
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            478889999999999655554444       45443322  2    23 7789999999999999999999999854

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=1.4  Score=46.13  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             CcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          157 EKSRILGNLAWAYMQQ----NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       157 d~~~a~~nLG~aY~~q----GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++..++..||.++...    +++.+|.-+|++.-+..|-++. ...+|.|.+.+|+|+||..+++.+|..+++++
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp  241 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP  241 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence            3444666677555543    6799999999999987777777 88899999999999999999999999988765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.37  E-value=3  Score=45.81  Aligned_cols=154  Identities=10%  Similarity=-0.000  Sum_probs=94.9

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHH---HHHHhhHHHHHHH-h
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQ---NKLKNIEEGIAFA-G  137 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~---~~L~l~~~a~a~~-~  137 (575)
                      ...|+.+.|+.|-+.+-...|....+....-......|+++.|+.+..+..+..+   .+.+   ..+-+. .+.... .
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA-kA~s~lda  243 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA-KAMSLLDA  243 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHhcC
Confidence            3468999999999999999999988877777888899999999999544332111   0000   000000 000000 0


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      ....+.. . -..++++.|+...+-..-+.+|+..|+..++-.+++.+.+..|.-.    ++.+|....--+-++.-+++
T Consensus       244 dp~~Ar~-~-A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~gdta~dRlkR  317 (531)
T COG3898         244 DPASARD-D-ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRARSGDTALDRLKR  317 (531)
T ss_pred             ChHHHHH-H-HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHhcCCCcHHHHHHH
Confidence            0000000 0 0235778899888888888999999999999999999998887543    34444443333444444444


Q ss_pred             HHH---HcCCC
Q 038048          218 VKI---SAGNR  225 (575)
Q Consensus       218 ALe---l~P~n  225 (575)
                      +-+   +.|++
T Consensus       318 a~~L~slk~nn  328 (531)
T COG3898         318 AKKLESLKPNN  328 (531)
T ss_pred             HHHHHhcCccc
Confidence            433   34544

>smart00028 TPR Tetratricopeptide repeats

Probab=94.36  E-value=0.066  Score=33.95  Aligned_cols=30  Identities=17%  Similarity=0.109  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ++++|.+|..+|++++|+..|++++++.|.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            678999999999999999999999998774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.04  E-value=1.1  Score=51.48  Aligned_cols=167  Identities=14%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH----HHHHHHHHH--
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGD----RVDSALKDMAVVMKQLDRSDEAIEARSGRIEE----EIELLQNKL--  126 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p----~~~~Al~nLA~iy~qqGrydEAie~~~gaLee----Ai~lL~~~L--  126 (575)
                      ++.-+.++...++.+.|...|++|++.+=    +.+..|.+-|..-++..+++.|+.+...+...    .+..++...  
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            34445566778899999999999988752    23567888888888999999999885444321    011111100  


Q ss_pred             -HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH-
Q 038048          127 -KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV--DMNK-  194 (575)
Q Consensus       127 -~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP--dn~~-  194 (575)
                       ..++..+..+.-+++...+.|.        ...+.+.---+.+..|.|..+....-+++|-+.|++.+.+.+  ...+ 
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di  549 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI  549 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence             1122233344444444444444        234555555677888999999999999999999999999864  3334 


Q ss_pred             HHHH-H--HHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          195 QCNL-A--ICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       195 ~~NL-A--~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      |... -  ..-..--+++.|..+|+++|+..|
T Consensus       550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            4432 2  222334578889999999999887

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.96  E-value=0.11  Score=58.74  Aligned_cols=100  Identities=13%  Similarity=0.022  Sum_probs=74.1

Q ss_pred             HHHHHHH-HHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH-HHHHHHHHHH
Q 038048           92 KDMAVVM-KQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS-RILGNLAWAY  169 (575)
Q Consensus        92 ~nLA~iy-~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY  169 (575)
                      .|+|-+| .-+|+...|+.+.++++..                                     .|... ....+||.++
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~-------------------------------------~p~~~~v~~v~la~~~  652 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNL-------------------------------------APLQQDVPLVNLANLL  652 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhcc-------------------------------------ChhhhcccHHHHHHHH
Confidence            4455555 4579999999997775432                                     22221 1567788888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD  228 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~  228 (575)
                      ..-|-.-+|-.++.++|.+.-.-+- .+-+|.+|+.+.+.+.|++.|++|++..|+++..
T Consensus       653 ~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  653 IHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             HHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence            8888888888888888888855555 7788888888888888888888888888877643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.85  E-value=0.84  Score=51.17  Aligned_cols=121  Identities=16%  Similarity=0.093  Sum_probs=81.3

Q ss_pred             ChHHHHHHHHHHHHcCCCc-------------------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048           69 DPSRAVSLFWAAINAGDRV-------------------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~-------------------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~  123 (575)
                      ...+|+.+|+++++.+...                         ..+...||.+..++|+.+||++++..-         
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdL---------  285 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDL---------  285 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHH---------
Confidence            4688999999998653221                         234578999999999999999884331         


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH-HHHHH
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ--EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMNK-QCNLA  199 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P--d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-dPdn~~-~~NLA  199 (575)
                                                  +...|  +.-.++.||..+|+.++.|.++...+.+==++ -|..+. .+.-|
T Consensus       286 ----------------------------lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA  337 (539)
T PF04184_consen  286 ----------------------------LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA  337 (539)
T ss_pred             ----------------------------HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence                                        11122  23458999999999999999999988884323 245555 44444


Q ss_pred             HHHHH-cCC---------------HHHHHHHHHHHHHHcCCCC
Q 038048          200 ICLMH-MNR---------------VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       200 ~iy~~-qGr---------------~eEAi~lLekALel~P~n~  226 (575)
                      .+..+ -++               -..|.+.+.+|++.+|..+
T Consensus       338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            43322 222               1236688888999888654

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.74  Score=47.66  Aligned_cols=96  Identities=16%  Similarity=0.007  Sum_probs=76.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHc--------CCCc----------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINA--------GDRV----------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l--------~p~~----------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~  123 (575)
                      .-.+..+++.+|+..|+.||..        .|..          ...+.|++.+++..|+|=++++.-..          
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se----------  255 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE----------  255 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH----------
Confidence            3446678899999999988642        2332          34577888889888888888876222          


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                                 .+...|.+..+|+..|.+....=+.++|.+-|.++|+++|.-..
T Consensus       256 ---------------------------iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  256 ---------------------------ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             ---------------------------HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence                                       24568889999999999999999999999999999999998775

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.72  E-value=1.6  Score=53.87  Aligned_cols=143  Identities=13%  Similarity=0.009  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE-----EIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee-----Ai~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      ..+-|.+.+..+|+..-.|...-.-++++++.++|.+...+++..     ..+-+.-.        ..+.|+-.++....
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiW--------iA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIW--------IAYLNLENAYGTEE 1514 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHH--------HHHHhHHHhhCcHH
Confidence            346677888889998877776666778999999999884443321     00111111        11122222222110


Q ss_pred             h-----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          148 K-----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       148 ~-----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      .     +++.. .-+...+|..|.-+|..-+++++|.++|+..++-.-+... |..+|..++.+.+-++|..++.+||+.
T Consensus      1515 sl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1515 SLKKVFERACQ-YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHHHHHHHHH-hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            0     11111 2244568899999999999999999999999998887777 999999999999999999999999998


Q ss_pred             cCC
Q 038048          222 AGN  224 (575)
Q Consensus       222 ~P~  224 (575)
                      -|.
T Consensus      1594 lPk 1596 (1710)
T KOG1070|consen 1594 LPK 1596 (1710)
T ss_pred             cch
Confidence            886

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.59  E-value=8.6  Score=43.34  Aligned_cols=74  Identities=9%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----------HHHHHHH-HHHcCCHHHHHHHHHHHH
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----------QCNLAIC-LMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----------~~NLA~i-y~~qGr~eEAi~lLekAL  219 (575)
                      .+..+|.+.++|+..-.+-...|+.+.-.+.|++|+.--|-...          +.|.+.. -+...+.+.+.++|+.+|
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            46669999999999999999999999999999999998776443          1244432 367889999999999999


Q ss_pred             HHcCC
Q 038048          220 ISAGN  224 (575)
Q Consensus       220 el~P~  224 (575)
                      ++-|.
T Consensus       394 ~lIPH  398 (677)
T KOG1915|consen  394 DLIPH  398 (677)
T ss_pred             hhcCc
Confidence            98874

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.54  E-value=2.4  Score=43.26  Aligned_cols=147  Identities=16%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHH----H---HHHHHHHHHhhHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEE----E---IELLQNKLKNIEEGIAF  135 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLee----A---i~lL~~~L~l~~~a~a~  135 (575)
                      ..+..+|+.+|+++..  ..++.+.++||.+|..    ..++.+|..++..+.+.    +   ...+......-......
T Consensus        90 ~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          90 SRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             cccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            3468899999996554  4567789999999988    45888888886555442    1   11111111000000000


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC----
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN----  206 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG----  206 (575)
                      ......+..-    ......-.+..+.++||.+|..    ..++.+|..+|.+|-+...  .. .++++ ++...|    
T Consensus       168 ~~~~~~A~~~----~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~  240 (292)
T COG0790         168 AYDDKKALYL----YRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK  240 (292)
T ss_pred             cHHHHhHHHH----HHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence            0000000000    0111133467799999988865    4589999999999999888  55 88888 666666    


Q ss_pred             -----------CHHHHHHHHHHHHHHc
Q 038048          207 -----------RVTEAKSLLQAVKISA  222 (575)
Q Consensus       207 -----------r~eEAi~lLekALel~  222 (575)
                                 +...|...+.++...-
T Consensus       241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~  267 (292)
T COG0790         241 KAAFLTAAKEEDKKQALEWLQKACELG  267 (292)
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHcC
Confidence                       6667777777666643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.49  E-value=0.52  Score=52.58  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=81.9

Q ss_pred             hhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHH
Q 038048           43 IFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGRIEEE  118 (575)
Q Consensus        43 ~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~gaLeeA  118 (575)
                      .-......|++..-+...+++....+++++|+..|++++.....-.    -.++.+|.++.-+.+|++|..++..-.++ 
T Consensus       256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-  334 (468)
T PF10300_consen  256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-  334 (468)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence            3344567788888888888999999999999999999885433322    36889999999999999999884331110 


Q ss_pred             HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC
Q 038048          119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNF-------EMAEQYYRKALSLGV  190 (575)
Q Consensus       119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGry-------eEAe~~yrkALeidP  190 (575)
                                        .                 +=......|..|.+|...|+.       ++|..+|+++-.+..
T Consensus       335 ------------------s-----------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  335 ------------------S-----------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             ------------------c-----------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence                              0                 001122556678999999999       888888888766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.17  E-value=0.37  Score=49.95  Aligned_cols=68  Identities=12%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          157 EKSRILGNLAWAYMQ-QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       157 d~~~a~~nLG~aY~~-qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      -...+|...|.+-+. .++.+.|...|+.+++..|.+.. +..+...+...|+.+.|..+|++++..-+.
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            345688888888666 56666699999999999999999 999999999999999999999999987554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.10  E-value=0.52  Score=41.01  Aligned_cols=47  Identities=19%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +..++++++.+|++.. .+.||..|+..|++++|+..|-.++..+++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4456666777777766 7777777777777777777777766665543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=3.7  Score=44.39  Aligned_cols=64  Identities=19%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             cCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          155 EQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       155 ~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                      +++.   .-+...++..+...|-|++|++.-++|++|+|.+.= ...++.++...|+++|+.+...+.
T Consensus       168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            5554   345667788999999999999999999999999887 888999999999999999887764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.95  E-value=0.5  Score=41.12  Aligned_cols=67  Identities=12%  Similarity=0.021  Sum_probs=49.1

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      .+..+|++..+.+.||..|...|++++|+..+-.++..++++..   .-.|-.++...|.-+....-|++
T Consensus        14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            46779999999999999999999999999999999999988743   45566666666665544444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.93  E-value=0.19  Score=39.75  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+.||..+.++|+|++|..+++.+|++.|+|.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            67899999999999999999999999999875

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.89  E-value=5.6  Score=41.14  Aligned_cols=164  Identities=17%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC------HHHHH
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGR------IEEEI  119 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~ga------LeeAi  119 (575)
                      +..++++. ..+..++++++..+..++...        ........|..-.-+..+..++|++.+....      +..-.
T Consensus        30 ~~~~~~al-~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~  108 (352)
T PF02259_consen   30 EYSFYRAL-LALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLL  108 (352)
T ss_pred             hHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence            34455553 335788999888888777542        1122222333334444555666666654222      11122


Q ss_pred             HHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH-
Q 038048          120 ELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM----NK-  194 (575)
Q Consensus       120 ~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn----~~-  194 (575)
                      ..+...+.........+..+.......-.  .+.+..+....+..++.+..+.|+++.|..++.++....+..    +. 
T Consensus       109 ~~W~~Rl~~~~~~~~~~~~il~~R~~~l~--~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v  186 (352)
T PF02259_consen  109 KRWRSRLPNMQDDFSVWEPILSLRRLVLS--LILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRV  186 (352)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcch
Confidence            23333332222222222222222111000  011234455689999999999999999999999999877432    33 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      .+..+.+++..|+..+|+..++..+.
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67789999999999999999999998

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.80  E-value=0.55  Score=43.00  Aligned_cols=91  Identities=16%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRV----------------------DSALKDMAVVMKQLDRSDEAIEARSGRIEE  117 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~----------------------~~Al~nLA~iy~qqGrydEAie~~~gaLee  117 (575)
                      .+......++++.++..+++++.+-.+.                      ..++..++..+...|++++|+....     
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----   86 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ-----   86 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH-----
Confidence            3444456778999999999998763221                      2345567777778888888887632     


Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          118 EIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS  187 (575)
Q Consensus       118 Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe  187 (575)
                                                      .++.++|.+..++..|-.+|..+|++.+|+..|++...
T Consensus        87 --------------------------------~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 --------------------------------RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             --------------------------------HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             --------------------------------HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                                            23677999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=2.2  Score=45.38  Aligned_cols=52  Identities=13%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA  110 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~  110 (575)
                      ..+.+....++++.|++-|+.|++...-.+-.-|++|.++.+.|+++.|+.+
T Consensus       149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence            3445556678999999999999999887778889999999999999999998

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=92.49  E-value=0.36  Score=51.22  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      +-.+.+.-....|+.++|..+|+.||+++|+++. ...+|.+.-.-.+.-+|-.+|-+||.+.|.+.+
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            3345566677899999999999999999999999 999999999999999999999999999998754

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.48  E-value=4.3  Score=43.94  Aligned_cols=52  Identities=15%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL  126 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L  126 (575)
                      ..|++.-+.+    |+.+|...+++..++.++..+|+++.|-++    ++.++-+++...
T Consensus        23 ~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~l----leRALf~~e~~~   74 (360)
T PF04910_consen   23 SHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDL----LERALFAFERAF   74 (360)
T ss_pred             ccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHHH
Confidence            3466544433    467899999999999999999999999999    444554454443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.91  E-value=0.29  Score=55.51  Aligned_cols=62  Identities=24%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             HHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          163 GNLA-WAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       163 ~nLG-~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      .|+| .-..-+|+.-.|++++..|+-..|....  ..|||+++++.|-.-+|-.++.++|.+.-.
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s  674 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS  674 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence            3444 4455689999999999999999998776  899999999999999999999999998743

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.89  E-value=5.4  Score=41.23  Aligned_cols=144  Identities=13%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDR----VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~----~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      +.+...+.+..|.++.|...+.++...++.    .+.+.+..+.++...|+..+|+......+..   .+......... 
T Consensus       149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~---~~~~~~~~~~~-  224 (352)
T PF02259_consen  149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC---RLSKNIDSISN-  224 (352)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhhhccccccH-
Confidence            445556667889999999999988875521    3456777899999999999999874333221   11110000000 


Q ss_pred             HHHHhHHH-HHHHHhch-hhHHhhcCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048          133 IAFAGVKT-KMARSQGK-KIQITVEQEKSRILGNLAWAYMQQ------NNFEMAEQYYRKALSLGVDMNK-QCNLAICLM  203 (575)
Q Consensus       133 ~a~~~nla-~al~sqg~-k~aL~L~Pd~~~a~~nLG~aY~~q------GryeEAe~~yrkALeidPdn~~-~~NLA~iy~  203 (575)
                       ....... ........ ............++..+|.....+      +.+++++..|++|+.++|+... ++.+|..+.
T Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  225 -AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             -HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence             0000000 00000000 000000111234888889887777      9999999999999999999999 888888765


Q ss_pred             Hc
Q 038048          204 HM  205 (575)
Q Consensus       204 ~q  205 (575)
                      ..
T Consensus       304 ~~  305 (352)
T PF02259_consen  304 KL  305 (352)
T ss_pred             HH
Confidence            43

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.77  E-value=9.6  Score=45.53  Aligned_cols=190  Identities=13%  Similarity=0.018  Sum_probs=113.7

Q ss_pred             CCCcCCCCcCccchhhhhhHhhcCCCC---CcHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHH
Q 038048           27 SERKRISTPENNKKGDIFHVIHKVPSG---DSPYV----RAKHIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDM   94 (575)
Q Consensus        27 se~r~~~~~~~r~Rae~y~~~~~~ps~---d~~ya----rA~~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nL   94 (575)
                      +.-|++++   ..-.+.+..+...++.   ...++    -.+++.++.+++++|+.+-+.++..=|..     ..++..+
T Consensus       427 s~~r~~ea---~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         427 SQHRLAEA---ETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HccChHHH---HHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            45677776   5555555555555422   11222    13356788999999999999999876554     2367789


Q ss_pred             HHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch------------hhH--HhhcCCcHH
Q 038048           95 AVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK------------KIQ--ITVEQEKSR  160 (575)
Q Consensus        95 A~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~------------k~a--L~L~Pd~~~  160 (575)
                      |.+..-.|++++|..+...+.+.+.. ++    ..+...-........+..+|+            ...  +.-.|-..-
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~-~~----~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQ-HD----VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHH-cc----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            99999999999999985554333221 00    000111111122222333332            111  111233223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeid----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      .+...+.++...-+++.|+.-.+..+++-    |....    .++||.++...|++++|...+.++..+-.+
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            33334444444444888888888888763    33332    348999999999999999999998886543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.71  E-value=1.5  Score=44.13  Aligned_cols=109  Identities=11%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             ChHHHHHHHHHHHHc----CCC-c--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           69 DPSRAVSLFWAAINA----GDR-V--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        69 d~eeAi~lf~kAL~l----~p~-~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ++++|+..|.-||-.    +.. .  +..+..+|-+|..+|+-++...++..+++.-...+....               
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~---------------  156 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED---------------  156 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc---------------
Confidence            578888888777632    212 1  346778899999999966666664444332222211110               


Q ss_pred             HHHHhchhhHHhhcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHH
Q 038048          142 MARSQGKKIQITVEQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K-QCNLAICL  202 (575)
Q Consensus       142 al~sqg~k~aL~L~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~-~~NLA~iy  202 (575)
                                ....+ +...+++.+|.++.+.|++++|..+|.+++...-... . ..++|.=.
T Consensus       157 ----------~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  157 ----------FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence                      00011 2245889999999999999999999999998654444 2 66666533

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.54  E-value=1.4  Score=42.53  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .+.|+...+-...|+++...|++.+|+..|+.+.+-.|.++. .--|+.||..+|+.+= ..+-+++++..+
T Consensus        38 vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~  108 (160)
T PF09613_consen   38 VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA  108 (160)
T ss_pred             HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC
Confidence            358999999999999999999999999999999988999988 7888999988887642 223344555543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.51  E-value=1.3  Score=51.64  Aligned_cols=59  Identities=20%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHH------HHHcC----CC-cHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWA------AINAG----DR-VDSALKDMAVVMKQLDRSDEAIEARSG  113 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~k------AL~l~----p~-~~~Al~nLA~iy~qqGrydEAie~~~g  113 (575)
                      ..|-+|+.++.--.|+++|+++|++      |+++.    |. ....-..-|.-+.++|+++.|+..+..
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie  731 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE  731 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence            3455677776667789999999874      44432    11 111223347778889999999988543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.50  E-value=12  Score=44.80  Aligned_cols=179  Identities=16%  Similarity=0.053  Sum_probs=102.6

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH--HH--
Q 038048           47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE--LL--  122 (575)
Q Consensus        47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~--lL--  122 (575)
                      ..+.|+..+..+--+...+..|..++|..+++..-...+.+...+--+-.+|.++|++++|..+|..+......  .+  
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~  115 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYH  115 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHH
Confidence            44667666666655566678899999997776655556666778888999999999999999997665543221  11  


Q ss_pred             --HHHHH--hh----HHHHH-----------HHhHHHHHHHHhch-----------------hhHHhhc-CCcHHHH-HH
Q 038048          123 --QNKLK--NI----EEGIA-----------FAGVKTKMARSQGK-----------------KIQITVE-QEKSRIL-GN  164 (575)
Q Consensus       123 --~~~L~--l~----~~a~a-----------~~~nla~al~sqg~-----------------k~aL~L~-Pd~~~a~-~n  164 (575)
                        ....+  ..    ..+..           ++.-....+.....                 ...+... +-...+= .-
T Consensus       116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L  195 (932)
T KOG2053|consen  116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL  195 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence              00000  00    00000           01110000100000                 0011111 1111111 11


Q ss_pred             HHHHHHHcCCHHHHHHHHH-HHHHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          165 LAWAYMQQNNFEMAEQYYR-KALSLGVDMNK-QCN-LAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yr-kALeidPdn~~-~~N-LA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .-.++..+|++++|...+. ...+..+.-.. ..| -...+...+++.+-.++..+++...++|
T Consensus       196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            1256778899999999994 44444444443 444 4557788899999888888888888776

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.32  E-value=0.26  Score=50.47  Aligned_cols=60  Identities=15%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      ...+.++.+.|.+.|.+||++-|+... |+.+|..-.+.|+++.|.+.|++.++++|++..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            456778999999999999999999999 999999999999999999999999999998753

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.30  E-value=2.7  Score=46.84  Aligned_cols=127  Identities=15%  Similarity=0.024  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHH--HhhHHHHHH-HhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKL--KNIEEGIAF-AGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L--~l~~~a~a~-~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      +.--|.++.+++++++|+.++.+.+++..   ..++..+  ..+  ..++ ..|+..+.....  ..-...|+.+-....
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gri--lnAffl~nld~Me~~l~--~l~~~~~~s~~l~LF   84 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRI--LNAFFLNNLDLMEKQLM--ELRQQFGKSAYLPLF   84 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHH--HHHHHHhhHHHHHHHHH--HHHHhcCCchHHHHH
Confidence            34458899999999999999877766543   2233222  000  0011 122211110000  001124555667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK----------------QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~----------------~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      .|.+.++++.|.+|++.+-.--..-.++..                -.-.|.+++++|++.|+..++++++..
T Consensus        85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            899999999999999887765544222111                124688999999999999999998874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.94  E-value=5  Score=44.83  Aligned_cols=60  Identities=23%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048          158 KSRILGNLA--WAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       158 ~~~a~~nLG--~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      +..+-+.|+  .-++.+|+|.++.-+-....++.|....+--+|.+++...+|+||..+|..
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            344556665  668899999999999999999999433388899999999999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.83  E-value=1.1  Score=38.69  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=46.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH---------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMN---------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~---------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ..+.|+|.+|+..+.+.+.......         . ..++|.++...|++++|+..+++++.+-.+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4578999999988888887643221         2 6789999999999999999999999986643

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.78  E-value=1.1  Score=54.77  Aligned_cols=140  Identities=19%  Similarity=0.139  Sum_probs=99.3

Q ss_pred             HHHHHHHHHcCChHHHHH------HHHHH-HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           58 VRAKHIQLIDKDPSRAVS------LFWAA-INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~------lf~kA-L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      ...+...+.++.+.+|..      ++... ..+.|.....+..|+.++...|++++|+....++.-....+++       
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g------- 1008 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG------- 1008 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-------
Confidence            344445556666665555      66633 3457888889999999999999999999985543211111110       


Q ss_pred             HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---H-HHHHHHH
Q 038048          131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMN---K-QCNLAIC  201 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~---~-~~NLA~i  201 (575)
                                            .-.|+....+.+|+...+..++...|...+.+|+.+.     |+.+   . ..|++.+
T Consensus      1009 ----------------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1009 ----------------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred             ----------------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence                                  1123444578888888888889999999999988873     4344   3 5789999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          202 LMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       202 y~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +...++++.|+.+++.|+..+....
T Consensus      1067 ~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1067 LLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999765443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.47  E-value=4.5  Score=46.86  Aligned_cols=157  Identities=10%  Similarity=0.078  Sum_probs=105.9

Q ss_pred             HHHHHcCChHHHHHHHHHHHH-cCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-------HHHHHHHHh
Q 038048           62 HIQLIDKDPSRAVSLFWAAIN-AGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-------ELLQNKLKN  128 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~-l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-------~lL~~~L~l  128 (575)
                      ++-++++++.+-+.-|..|+. .+|..     -..+..+|..|...|+.+.|..++.++.....       .++..--. 
T Consensus       355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae-  433 (835)
T KOG2047|consen  355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE-  433 (835)
T ss_pred             hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH-
Confidence            456788899999999988875 46653     24788999999999999999999554433111       11100000 


Q ss_pred             hHHHHHHHh-HHHHHHHHhch------hhHHhh--c--C------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048          129 IEEGIAFAG-VKTKMARSQGK------KIQITV--E--Q------EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       129 ~~~a~a~~~-nla~al~sqg~------k~aL~L--~--P------d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd  191 (575)
                          ....+ +.-.++.-.++      ...+..  +  |      ....+|..++++....|-++.-...|.+.+++.=-
T Consensus       434 ----mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria  509 (835)
T KOG2047|consen  434 ----MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA  509 (835)
T ss_pred             ----HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence                00000 00000000000      000000  0  0      12337788889999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .+. ..|.|..+-+..-+++|.+.|++-+.+-+
T Consensus       510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            999 89999999999999999999999988765

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.11  E-value=8  Score=36.23  Aligned_cols=61  Identities=21%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH-H----HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALS-------LGVDMNK-Q----CNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALe-------idPdn~~-~----~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      .+-.|+.++..+|+|++++..-.+||.       ++.|.-. |    ++.|.++..+|+.+||+..|+.+-+.
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            566788999999999999888888876       4555544 3    58899999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.08  E-value=3.9  Score=44.20  Aligned_cols=154  Identities=8%  Similarity=-0.090  Sum_probs=88.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH---HHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE---EIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee---Ai~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ...|+.-+|.....+.|.-.|.+.-++.---.++...|+.+.-.....+.+..   .+-.+-..+.++.-++.-.+-+.+
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            44556666666677777777766555554555555566655555443332221   010011111111000000000000


Q ss_pred             HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHH
Q 038048          142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                       +..+- .+++.+++.+.-+...++-++...|++.++.++..+--..--+.-.     +..-|.+|++-+.|+.|+.+|+
T Consensus       194 -AEk~A-~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  194 -AEKQA-DRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             -HHHHH-HhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence             00000 3568889999999999999999999999999887764433222111     3467999999999999999998


Q ss_pred             HHHH
Q 038048          217 AVKI  220 (575)
Q Consensus       217 kALe  220 (575)
                      +-+-
T Consensus       272 ~ei~  275 (491)
T KOG2610|consen  272 REIW  275 (491)
T ss_pred             HHHH
Confidence            6443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.46  E-value=6.8  Score=44.72  Aligned_cols=66  Identities=17%  Similarity=0.120  Sum_probs=40.2

Q ss_pred             cCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHc
Q 038048          155 EQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLekALel~  222 (575)
                      +-.++.+.+.||.+|..-.   ++..|..+|..|...  .+.. .++||.+|..    .-+...|..++.++.+..
T Consensus       321 ~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  321 ELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             hcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            3345556677777666655   456777777766532  3344 6666666643    346667777777776654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.90  E-value=13  Score=38.29  Aligned_cols=130  Identities=18%  Similarity=0.103  Sum_probs=76.7

Q ss_pred             HHHcCChHHHHHHHHHHHHc----CCCc----HHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINA----GDRV----DSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l----~p~~----~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ...+||.+.|..+|.|+-..    +|..    ...+|+.|..+.+.+ ++++|.....++++    ++.....+      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~----~l~~~~~~------   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD----ILEKPGKM------   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH----HHHhhhhc------
Confidence            35678999999999987543    3332    346899999999999 99999999555443    22210000      


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCc----HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHH--HHHHHHHHHc
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEK----SRILGNLAWAYMQQNNFEM---AEQYYRKALSLGVDMNKQ--CNLAICLMHM  205 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~----~~a~~nLG~aY~~qGryeE---Ae~~yrkALeidPdn~~~--~NLA~iy~~q  205 (575)
                                       ....++.    ..++..|+.+|...+.++-   |+.+.+.+-.-.|+.+..  ..+-.+.. .
T Consensus        73 -----------------~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~  134 (278)
T PF08631_consen   73 -----------------DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-S  134 (278)
T ss_pred             -----------------cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-c
Confidence                             0001111    1255666777777666543   333444444445665552  33333333 6


Q ss_pred             CCHHHHHHHHHHHHHH
Q 038048          206 NRVTEAKSLLQAVKIS  221 (575)
Q Consensus       206 Gr~eEAi~lLekALel  221 (575)
                      ++.+++...+.+++..
T Consensus       135 ~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  135 FDEEEYEEILMRMIRS  150 (278)
T ss_pred             CChhHHHHHHHHHHHh
Confidence            7777777777777764

It is also involved in sporulation [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.57  E-value=1.2  Score=34.06  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048          196 CNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE  244 (575)
Q Consensus       196 ~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e  244 (575)
                      ++||.+|+++|+.+.|..++++++. ..+       ......|+.++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~-------~~q~~eA~~LL~~   43 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE-EGD-------EAQRQEARALLAQ   43 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH-cCC-------HHHHHHHHHHHhc
Confidence            6899999999999999999999995 221       1334566666653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=88.47  E-value=1.6  Score=46.94  Aligned_cols=89  Identities=15%  Similarity=0.066  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SY  231 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~  231 (575)
                      -|-.-|+-|++-.+|..|+.+|.+.|+..   |+-..  +.|.|.+....|+|..|+.-+.+++.++|.+..+.    ..
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            44556899999999999999999999985   55444  77999999999999999999999999999876421    12


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 038048          232 SRSFERAIQMLTELESPS  249 (575)
Q Consensus       232 l~slerA~elL~ele~al  249 (575)
                      +-.++++.+.+.-++..+
T Consensus       163 ~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            233444444444444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.36  E-value=7.5  Score=43.37  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSG---RIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~g---aLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ..++..+|++++..+.... ++-|.. ..-...++.-+.++|-++.|+..-..   +++.|++               .+
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~---------------lg  332 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQ---------------LG  332 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHH---------------CT
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHh---------------cC
Confidence            3457788998876666421 112222 23466788899999999999988211   1111111               12


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      ++..++.       +...-++...|..||.+.+.+|+++-|+.+|+++=.       +..|..+|.-.|+.+.=.++.+.
T Consensus       333 ~L~~A~~-------~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  333 NLDIALE-------IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             -HHHHHH-------HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             CHHHHHH-------HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHH
Confidence            2222211       223445677999999999999999999999998632       45677778888887666666555


Q ss_pred             HHH
Q 038048          218 VKI  220 (575)
Q Consensus       218 ALe  220 (575)
                      +..
T Consensus       399 a~~  401 (443)
T PF04053_consen  399 AEE  401 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.22  E-value=0.55  Score=31.29  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYR  183 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yr  183 (575)
                      ++++||.+|..+|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.16  E-value=1.8  Score=41.13  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQN---NFEMAEQYYRKALS-LGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qG---ryeEAe~~yrkALe-idPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ...+++++++....   +..+-+.+++..++ -.|+...  .+-||..+.+.|+|++|+.+++..|+..|+|.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            37789998887765   45678899999997 5565554  78999999999999999999999999999865

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.99  E-value=2  Score=37.15  Aligned_cols=35  Identities=26%  Similarity=0.151  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      .++.++|.++...|++++|+..+++|+++-....+
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            37789999999999999999999999998765544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.52  E-value=4.3  Score=42.67  Aligned_cols=71  Identities=13%  Similarity=0.017  Sum_probs=64.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      ....++..++..+...|+++.++..+++.+.++|-+.. +..|-.+|...|+...|+..|+++-....++++
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            34558889999999999999999999999999999999 999999999999999999999999987666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.39  E-value=4.3  Score=47.63  Aligned_cols=140  Identities=12%  Similarity=0.157  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH------Hc----CCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--HHHHHH-
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAI------NA----GDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIE--EEIELL-  122 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL------~l----~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLe--eAi~lL-  122 (575)
                      |+.|-++++.-+.|+.|+..|.+.-      .+    .++ .-+.+..+|.-|...|++++|++.+..+-+  .+..++ 
T Consensus       840 f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk  919 (1636)
T KOG3616|consen  840 FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYK  919 (1636)
T ss_pred             hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhh
Confidence            3444455555678888888887642      11    122 134677889999999999999988554422  222211 


Q ss_pred             -----HHHHHhh-------------H---------HHHHHHhHHHHHHHHhch-------hh-----HHhhcCCcHHHHH
Q 038048          123 -----QNKLKNI-------------E---------EGIAFAGVKTKMARSQGK-------KI-----QITVEQEKSRILG  163 (575)
Q Consensus       123 -----~~~L~l~-------------~---------~a~a~~~nla~al~sqg~-------k~-----aL~L~Pd~~~a~~  163 (575)
                           ..+.+..             +         .+..++++++.+...-.-       .+     .+.++..-..++.
T Consensus       920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhl  999 (1636)
T KOG3616|consen  920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHL  999 (1636)
T ss_pred             hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchh
Confidence                 1111100             0         000011111111100000       01     1333444556888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 038048          164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC  196 (575)
Q Consensus       164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~  196 (575)
                      .++..+...|++++|-..|.+|++++.-|..|+
T Consensus      1000 k~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred             HHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence            899999999999999999999999998777644

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.29  E-value=3.4  Score=40.24  Aligned_cols=101  Identities=19%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..++..+|..|.+.|++++|+++|....+.- ..                                 ..+-.+.+.++-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~---------------------------------~~~~id~~l~~ir   81 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TS---------------------------------PGHKIDMCLNVIR   81 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CC---------------------------------HHHHHHHHHHHHH
Confidence            3578899999999999999999966532210 00                                 0112347788889


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC--CHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVD--MNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPd--n~~-----~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      +....|++.....+..+|-.+-..  +..     .+--|..++.+++|.+|-.+|-.++...
T Consensus        82 v~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   82 VAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            999999999999999998876543  232     2345888899999999999997776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.83  E-value=10  Score=41.48  Aligned_cols=149  Identities=13%  Similarity=0.013  Sum_probs=78.4

Q ss_pred             cCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           67 DKDPSRAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .||.++|+..+..++. ....+++.+.-+|-+|.+.  |.++-......++.++..+.+....                 
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~--~~~s~~~d~~~ldkAi~~Y~kgFe~-----------------  255 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL--FLESNFTDRESLDKAIEWYRKGFEI-----------------  255 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH--HHHcCccchHHHHHHHHHHHHHHcC-----------------
Confidence            5899999999988554 4556677888889888765  2222111111234444444433321                 


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------H---hCCCCHH--HHHHHHHHHHcCCHHHHH
Q 038048          146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL--------S---LGVDMNK--QCNLAICLMHMNRVTEAK  212 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL--------e---idPdn~~--~~NLA~iy~~qGr~eEAi  212 (575)
                               +|+.. .=.|++.++.-.|.-.+...-.++..        +   +.+...-  ...++.+..-.|++++|+
T Consensus       256 ---------~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~  325 (374)
T PF13281_consen  256 ---------EPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI  325 (374)
T ss_pred             ---------Ccccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence                     11111 11222222222222111111111111        0   1122111  457888889999999999


Q ss_pred             HHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhccc
Q 038048          213 SLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESP  248 (575)
Q Consensus       213 ~lLekALel~P~n~~~~~~l~slerA~elL~ele~a  248 (575)
                      +.+++++.+.|..|..    ++.-+-..++..+...
T Consensus       326 ~a~e~~~~l~~~~W~l----~St~~ni~Li~~~~~~  357 (374)
T PF13281_consen  326 QAAEKAFKLKPPAWEL----ESTLENIKLIRHFRKR  357 (374)
T ss_pred             HHHHHHhhcCCcchhH----HHHHHHHHHHHHHhcC
Confidence            9999999999988843    3333334444444433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.41  E-value=3.8  Score=39.72  Aligned_cols=67  Identities=12%  Similarity=-0.038  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+..+..+-...++.++++.++...--+.|.++. ..--|.+++..|+|.+|+.+|+.+....|..+
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence            46677788888999999999999999999999999 88899999999999999999999877665443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.03  E-value=2.2  Score=45.59  Aligned_cols=52  Identities=17%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      ..+|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|.+++.
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt  178 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT  178 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence            5678999999999999999999999999999999988888888888777654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=85.89  E-value=9.6  Score=43.72  Aligned_cols=76  Identities=21%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHH-HHHH------HHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK-ALSLGVDMNK-QCNL------AICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrk-ALeidPdn~~-~~NL------A~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .+.++|++..++.+||.++...|..-.|...+.. ++.+.|++.. ...+      +..+..+|+..++...++++.++.
T Consensus        93 ~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~  172 (620)
T COG3914          93 PLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL  172 (620)
T ss_pred             hHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            3566888888889998777777777666666655 8888888887 4444      888888899999999999988888


Q ss_pred             CCCC
Q 038048          223 GNRQ  226 (575)
Q Consensus       223 P~n~  226 (575)
                      |.+.
T Consensus       173 p~~~  176 (620)
T COG3914         173 PKYP  176 (620)
T ss_pred             hhhh
Confidence            8764

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.66  E-value=2.3  Score=30.98  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQY--YRKALSLGVDM  192 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~--yrkALeidPdn  192 (575)
                      .++.+|..+..+|++++|+..  |+-+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456677778888888888888  44666666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.41  E-value=4.1  Score=39.65  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .++..+|..|.+.|++++|++.|.++.+..-....    .+++..+.+..|++..+..++.++-.+-.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999998886544332    56888899999999999999999988644

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.37  E-value=43  Score=33.54  Aligned_cols=143  Identities=13%  Similarity=0.043  Sum_probs=91.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      ......+..++|+.-|...-..+-..  .-+....|.+..+.|+-++|+..+...-.                       
T Consensus        66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-----------------------  122 (221)
T COG4649          66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-----------------------  122 (221)
T ss_pred             HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-----------------------
Confidence            33456778888988887655544333  23677889999999999999987422100                       


Q ss_pred             HHHHHHhchhhHHhhcCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHH
Q 038048          140 TKMARSQGKKIQITVEQEKS--RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKS  213 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~--~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~  213 (575)
                                  ..--|...  .+-..-+.++...|-|++-....+.. .- +.++   . .-.||..-++.|++..|.+
T Consensus       123 ------------dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL-a~-d~n~mR~sArEALglAa~kagd~a~A~~  188 (221)
T COG4649         123 ------------DTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL-AG-DGNPMRHSAREALGLAAYKAGDFAKAKS  188 (221)
T ss_pred             ------------cCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc-cC-CCChhHHHHHHHHhHHHHhccchHHHHH
Confidence                        00011111  13445567888889998876655432 22 2232   2 5579999999999999999


Q ss_pred             HHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhcc
Q 038048          214 LLQAVKISAGNRQMDTSYSRSFERAIQMLTELES  247 (575)
Q Consensus       214 lLekALel~P~n~~~~~~l~slerA~elL~ele~  247 (575)
                      .|..+.. +-..+     -...+||+-++..+.+
T Consensus       189 ~F~qia~-Da~ap-----rnirqRAq~mldlI~s  216 (221)
T COG4649         189 WFVQIAN-DAQAP-----RNIRQRAQIMLDLIDS  216 (221)
T ss_pred             HHHHHHc-cccCc-----HHHHHHHHHHHHHHhc
Confidence            9998877 22111     1234678877776654

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.32  E-value=41  Score=36.64  Aligned_cols=141  Identities=11%  Similarity=0.088  Sum_probs=82.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ....+.++..-++.-..|++++|.-+.+|..||.-  ..--.-+|+.++..++......+.               ....
T Consensus       193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr---------------~sqq  255 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYR---------------QSQQ  255 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHh---------------hHHH
Confidence            34556677777788888899999888777766542  222233344433333222222221               1111


Q ss_pred             HHHhchh-hHHhhcCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHH
Q 038048          143 ARSQGKK-IQITVEQEKSR--ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       143 l~sqg~k-~aL~L~Pd~~~--a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                      ...++.. -+......+..  +--.|+.+-.++|+..||++.++...+-.|=...   +-||-.++++..-|.+...++-
T Consensus       256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa  335 (556)
T KOG3807|consen  256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA  335 (556)
T ss_pred             HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222210 00111111122  3356788999999999999999999988883322   5588888888887777777666


Q ss_pred             HHHH
Q 038048          217 AVKI  220 (575)
Q Consensus       217 kALe  220 (575)
                      +.=+
T Consensus       336 kYDd  339 (556)
T KOG3807|consen  336 KYDD  339 (556)
T ss_pred             hhcc
Confidence            5443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.21  E-value=1.3  Score=29.54  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          195 QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       195 ~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      .++||.+|..+|++++|+..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhC
Confidence            67899999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=83.23  E-value=33  Score=36.33  Aligned_cols=149  Identities=11%  Similarity=-0.005  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH-HHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch-----
Q 038048           75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEA-IEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK-----  148 (575)
Q Consensus        75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEA-ie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~-----  148 (575)
                      .-|.+.+..+|.+..++..+...-...-..... ........+..+.+|++++...+........+.........     
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            356778888999888887776655544332221 11112223445556666654332222222211111111111     


Q ss_pred             ---hhHHhhcCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC----C---------C-HH-----HHHHHHHHH
Q 038048          149 ---KIQITVEQEKSRILGNLAWAYM---QQNNFEMAEQYYRKALSLGV----D---------M-NK-----QCNLAICLM  203 (575)
Q Consensus       149 ---k~aL~L~Pd~~~a~~nLG~aY~---~qGryeEAe~~yrkALeidP----d---------n-~~-----~~NLA~iy~  203 (575)
                         +.++..+|+...+|...-....   ..-.+.+....|.++|..-.    +         . ..     ..++...+.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence               3345667777776644432222   22357788888888776421    1         0 11     246777888


Q ss_pred             HcCCHHHHHHHHHHHHHHcC
Q 038048          204 HMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P  223 (575)
                      ..|-.+.|+.+++-+++.+=
T Consensus       166 ~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  166 QAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HCCchHHHHHHHHHHHHHHc
Confidence            99999999999999999864

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.57  E-value=7.7  Score=37.35  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=47.0

Q ss_pred             hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          154 VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       154 L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      +.|....+-...|+++...|+|.+|+..|+...+-.+..+. .--++.|+.-+|+.+
T Consensus        39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            47888888888899999999999999999998888888777 777888888888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.36  E-value=5.5  Score=34.36  Aligned_cols=59  Identities=20%  Similarity=0.054  Sum_probs=47.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC---NLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~---NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      ..-|.=++.+.+.++|+..+++||+..++... +.   .|..+|.+.|+|.+++++.-.=+++
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566999999999999999999999887 44   4566789999999998887665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.10  E-value=2.1  Score=31.72  Aligned_cols=29  Identities=31%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                      +|..||.+-+..++|++|+.-|+++|+|.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            56677777777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.03  E-value=3.2  Score=41.71  Aligned_cols=55  Identities=18%  Similarity=0.128  Sum_probs=32.3

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                      +++.+.|+....|+.||.++...|+.-+|+=+|-+++...--++. ..||..++.+
T Consensus         7 ~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    7 KAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            355666666666666666666666666666666666655444444 6666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.90  E-value=6.3  Score=39.58  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=49.3

Q ss_pred             hhhHhhcCCCCCcHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHH
Q 038048           43 IFHVIHKVPSGDSPYVRAKHIQ-LIDKDPSRAVSLFWAAINAGDR----VDSALKDMAVVMKQLDRSDEAI  108 (575)
Q Consensus        43 ~y~~~~~~ps~d~~yarA~~l~-l~~kd~eeAi~lf~kAL~l~p~----~~~Al~nLA~iy~qqGrydEAi  108 (575)
                      .|-.....+..+.+-+.....- ....|+++|+.+|.++|++.+.    +++.+..||.+|.++|++++|-
T Consensus       128 ~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  128 RFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3444555555566665544443 4477999999999999987543    4789999999999999999985

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.67  E-value=1.1e+02  Score=34.93  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGV--DMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidP--dn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++-.|...+.++++.||...+++.|+...  |+..     ..-|+.+....|+..|+..+..-++.+...-+
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~  519 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP  519 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence            667778888889999999999999988761  1111     23578888889999999998888888765544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=80.57  E-value=5.5  Score=41.62  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ...|+=.+|...++++.|..+..+.+.++|+++. .-.-|.+|..+|-+.-|+.-+...++..|+++
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            5567778999999999999999999999999998 88999999999999999999999999999876

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.52  E-value=1.2e+02  Score=35.33  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             ChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH---------
Q 038048           69 DPSRAVSLFWAAINA------------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK---------  127 (575)
Q Consensus        69 d~eeAi~lf~kAL~l------------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~---------  127 (575)
                      -|++|...|.-|...            .|.....+..+|.+...+|+.+-|..+    ++.++..++.++.         
T Consensus       253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadL----ieR~Ly~~d~a~hp~F~~~sg~  328 (665)
T KOG2422|consen  253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADL----IERGLYVFDRALHPNFIPFSGN  328 (665)
T ss_pred             HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHH----HHHHHHHHHHHhcccccccccc
Confidence            356777767666543            344567788999999999999999988    3334444444432         


Q ss_pred             -----hhHHHHHHHhHHHHH---HHHhch--------hhHHhhcCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHH----
Q 038048          128 -----NIEEGIAFAGVKTKM---ARSQGK--------KIQITVEQE-KSR-ILGNLAWAYMQQNNFEMAEQYYRKA----  185 (575)
Q Consensus       128 -----l~~~a~a~~~nla~a---l~sqg~--------k~aL~L~Pd-~~~-a~~nLG~aY~~qGryeEAe~~yrkA----  185 (575)
                           ..+..-.++..+...   +...|.        +.++.++|. ++- +.+.+-...++..+|+==|..++..    
T Consensus       329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n  408 (665)
T KOG2422|consen  329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN  408 (665)
T ss_pred             ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence                 111111222222211   122222        456777776 544 3333444445566666666666655    


Q ss_pred             -HHhCCCCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCC
Q 038048          186 -LSLGVDMNKQCNLAICLMHMNR---VTEAKSLLQAVKISAGN  224 (575)
Q Consensus       186 -LeidPdn~~~~NLA~iy~~qGr---~eEAi~lLekALel~P~  224 (575)
                       |.+-|+..--..||..|.....   -..|...+.+|+...|.
T Consensus       409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence             4445666656677777777766   56788888888888773

>PRK10941 hypothetical protein; Provisional

Probab=80.03  E-value=9.5  Score=39.83  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      .+.+|=.+|.+.++++.|+.+.                                     ...+.+.|+++.-+-..|.+|
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~-------------------------------------e~ll~l~P~dp~e~RDRGll~  225 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRAS-------------------------------------EALLQFDPEDPYEIRDRGLIY  225 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHH-------------------------------------HHHHHhCCCCHHHHHHHHHHH
Confidence            4678888999999999999872                                     134678999999889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      .++|.+..|..-|+.-++..|+.+.
T Consensus       226 ~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        226 AQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHcCCcHHHHHHHHHHHHhCCCchh
Confidence            9999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-04

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 23/187 (12%), Positives = 59/187 (31%), Gaps = 33/187 (17%)

Query: 57  YVRAKHIQLIDKDPSRAVSLFWAAI----NAGDRVDSA--LKDMAVVMKQLDRSDEAIEA 110
           Y +A       K   +A   +        N      +A   +   +++K L R  EA++ 
Sbjct: 39  YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 111 ---------RSGRIEEEIELLQN-----KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ 156
                     +G  +     L       +  ++ + +        +  ++ +  Q     
Sbjct: 99  IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA---- 154

Query: 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-------CNLAICLMHMNRVT 209
             + ++G  +   ++Q  F+ A    +K  S+  +M              +  +H     
Sbjct: 155 --AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 210 EAKSLLQ 216
            A+  ++
Sbjct: 213 AAQKCVR 219

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKIS 221
            L         +E A Q Y     + ++  +   + A C + +  +  A      A  ++
Sbjct: 57  GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

Query: 222 AGNRQMDTSYSRSFERAIQMLTELE 246
           A        +     RA  ML  + 
Sbjct: 117 AAQPA----HEALAARAGAMLEAVT 137

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 145 SQGKKIQ--ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMNKQCNLAIC 201
           S G  +     + ++    L  L +   Q   ++ A++ ++    L   D      L  C
Sbjct: 2   SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61

Query: 202 LMHMNRVTEA-KSLLQAVKISAGN 224
              +    +A +S      +    
Sbjct: 62  RQSLGLYEQALQSYSYGALMDINE 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 71/535 (13%), Positives = 145/535 (27%), Gaps = 173/535 (32%)

Query: 61  KHIQLIDKDP-SRAVSLFWAAINAGDR-----VDSAL-KDMAVVMKQL-----DRSDEAI 108
            HI ++ KD  S  + LFW  ++  +      V+  L  +   +M  +       S    
Sbjct: 52  DHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 109 EARSGR----------------IEEEIELLQNKLKNI--EEGIAFAGV----KTKMARS- 145
                R                  +    L+  L  +   + +   GV    KT +A   
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 146 -QGKKIQITVEQEKSRILGNLAWAYMQQNN-----FEMAEQYYRKALSLGVDMNKQCNLA 199
               K+Q  ++         + W  ++  N      EM ++   +   +  +   + + +
Sbjct: 171 CLSYKVQCKMD-------FKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHS 220

Query: 200 ICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVG 259
             +    R+   ++ L         R +    S+ +E  + +L  +++            
Sbjct: 221 SNIKL--RIHSIQAEL--------RRLL---KSKPYENCLLVLLNVQNAKAWN------- 260

Query: 260 DDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLST---FSVCRSLANGHDEEILNEQDRI 316
                   F L          +C         L T     V   L+      I  +   +
Sbjct: 261 -------AFNL----------SCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 317 AYSRNHHENKH---SFLGYDKGSLKLMSSGPRAASQFSLPLFV--------DNGRRGSYI 365
             +    E K     +L      L      PR     + P  +        D        
Sbjct: 297 TLT--PDEVKSLLLKYLDCRPQDL------PREVLTTN-PRRLSIIAESIRDGLATWDNW 347

Query: 366 GNPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDG 425
            + +    L + ++           S    E    PA  R+  + L       F      
Sbjct: 348 KHVNCDK-LTTIIE----------SSLNVLE----PAEYRKMFDRLSV-----FPP---- 383

Query: 426 EQGKDRWGPIGSSNINQSSEKTLHTYSTVLFTQPRRSSSRE--HNMEDQRVARCREKPVG 483
                      S++I       L    ++++    +S      + +    +   + K   
Sbjct: 384 -----------SAHI---PTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 484 SSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALPSPNCED 538
            SI  +  E  +  EN+ A     + R +V            +       P   D
Sbjct: 426 ISIPSIYLELKVKLENEYA-----LHRSIV--DHYNIPKTFDSDD---LIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 54/458 (11%), Positives = 121/458 (26%), Gaps = 136/458 (29%)

Query: 5   VDKNFSTPPP-----TWRKQ--RSLPSPLSERKRISTPENNKKGDIFHVIHKVP-SGDSP 56
            D+ ++           R Q    L   L E +    P  N    +  +I  V  SG + 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR----PAKN----V--LIDGVLGSGKT- 164

Query: 57  YVRAKHIQLIDKDPSRAVS--LFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114
              A  +  +       +   +FW  +   +  ++ L+ +  ++ Q+D +  +    S  
Sbjct: 165 -WVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 115 IEEEIELLQNKLKNI------------------EEGI-AFA-GVKTKMARSQGKKI--QI 152
           I+  I  +Q +L+ +                   +   AF    K  +  ++ K++   +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFL 281

Query: 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM----NKQCN-LAICLMHMNR 207
           +        L + +            +    K L              N   + ++    
Sbjct: 282 SAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333

Query: 208 VTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQRP 267
              A+S+   +      + ++          I+            L  LE  + +K    
Sbjct: 334 ---AESIRDGLATWDNWKHVNCD---KLTTIIES----------SLNVLEPAEYRKMFDR 377

Query: 268 FA-LPADGNTNPQVTC-----STSGGQNHHLSTFSVCRSLANG---------HD------ 306
            +  P   +    +                ++      SL                    
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELK 436

Query: 307 EEILNEQD---RI--AYS--RNHHENK----------HSFLGY--------DKGSL---- 337
            ++ NE      I   Y+  +    +           +S +G+        ++ +L    
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 338 ---------KLMSSG-PRAASQFSLPLFVDNGRRGSYI 365
                    K+        AS   L           YI
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 29/159 (18%)

Query: 56  PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI 115
            Y + K ++LI      AV+    A  A D +      +A +    D+ +EA        
Sbjct: 306 MYGKRKLLELIGH----AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361

Query: 116 EEEIE-------------LLQNKLKNIEEGIA------------FAGVKTKMARSQGKKI 150
            +E+                  ++K  ++ I                 K K    +  K+
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421

Query: 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189
           +++     S  L  LA+        + A++   + L  G
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-VDMNKQCNLAICLMHMNRVTE 210
             ++   SR    L         +++A   Y     +   +     + A CL+    + E
Sbjct: 48  CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107

Query: 211 A-KSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELE 246
           A   L  A ++ A   +    +     R   ML  ++
Sbjct: 108 AESGLFLAQELIANXPE----FXELSTRVSSMLEAIK 140

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 15/104 (14%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLG-VDMNKQCNLAICLMHMNRVTEA-KSLLQAVKIS 221
           +LA+   Q   +E A   ++    L   D      L  C   M +   A  S      + 
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 222 AGNRQMDTSYS-------------RSFERAIQMLTELESPSVLK 252
               +     +                  A +++        L 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEA-KSLLQA 217
            L   +MQ  N  +A +Y + + +L     +        L +   + + +  A      A
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYAL----FQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501

Query: 218 VKISAGNRQMDTSY 231
           + +    +  +  +
Sbjct: 502 LLLVKKTQSNEKPW 515

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ--------CNLAICLMHMNRVTE 210
             +L  L      +++ + A  +++ AL L                NL      +     
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 211 A-KSLLQAVKI 220
           A  +L Q + +
Sbjct: 535 AIDALNQGLLL 545

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 10/63 (15%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC-----NLAICLMHMNRVTEA-KSLLQA 217
             A ++  +   + A   Y  A  L     +        L +  M +  +  A + L  +
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467

Query: 218 VKI 220
             +
Sbjct: 468 YAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 10/102 (9%), Positives = 21/102 (20%), Gaps = 27/102 (26%)

Query: 161 ILGNLAWAYMQQNNFEMAEQYYRKALSL----GVDMNKQCNLAICLMHMNRVTEA-KSLL 215
           +L   A     ++ F        K L +                 L       +      
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP---LHLASLHESGEKNKLYLISN 363

Query: 216 QAVKISAGNRQMDTSYS----------------RSFERAIQM 241
             V     + +   ++                 R F ++  M
Sbjct: 364 DLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 23/162 (14%), Positives = 40/162 (24%), Gaps = 12/162 (7%)

Query: 69  DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN 128
           D  R +    AA+    +   A   +A     +  +     A    ++  + L      +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMA----VQRGLALHPG---H 56

Query: 129 IEEGIAFAGVKTKMARSQGKKIQ----ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK 184
            E       V+    R     +          E   I   L  A       E A   Y +
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 185 ALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225
           A  L  +       L      +        L   V+ +    
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTE 210
              +      +  LA  Y  +  F+ A   Y  A +LG +      +   C + +    +
Sbjct: 63  CIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLK 122

Query: 211 AKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELE 246
           AK   + V   + + ++         +A   L  ++
Sbjct: 123 AKECFELVIQHSNDEKL-------KIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLG-VDMNKQCNLAICLMHMNRVTEA-KSLLQAVKIS 221
           + A+ +  +   E AE ++R        +++    LA       +  +A      A  + 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 222 AGN 224
             +
Sbjct: 101 KND 103

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 15/191 (7%)

Query: 57  YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG--R 114
            + A  I   D++P  A+       +        +     ++ +LDR D A +       
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQD 158

Query: 115 IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN 174
            +E+  L Q     +   +A  G K + A    +++          +L   A  +M Q  
Sbjct: 159 QDEDATLTQLATAWVS--LAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGR 215

Query: 175 FEMAEQYYRKALSLG-VDMNKQCNLAICLMHMNRVTEA-KSLLQAVKISAGNRQMDTSY- 231
           +E AE   ++AL           NL +   H+ +  E     L  +K +  +      Y 
Sbjct: 216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275

Query: 232 --SRSFERAIQ 240
                F+R + 
Sbjct: 276 AKENDFDRLVL 286

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKIS 221
            L   +     +  AE      +    +    +   A+ L ++ R  +  + LL+ +  +
Sbjct: 32  GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91

Query: 222 AGNRQMDTSYSRSFERAIQ 240
           + +  +     +S+++AI 
Sbjct: 92  SDDETI-----QSYKQAIL 105

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 32/168 (19%)

Query: 80  AINAGDRVDSA--LKDMAVVMKQLDRSDEAIE----------ARSGRIEEEIELLQN--- 124
            I   DR++ A     M+     + ++  +++                   ++       
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192

Query: 125 ---KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY 181
               LK  E+ I+      + A S  +  +    Q   R L N+      Q+ +E A  Y
Sbjct: 193 NFLDLKQYEDAISH----FQKAYSMAEAEKQ--PQLMGRTLYNIGLCKNSQSQYEDAIPY 246

Query: 182 YRKALSLGVDMNKQ-------CNLAICLMHMNRVTEAKSLL-QAVKIS 221
           +++A+++  + N           +      + ++ +A     + +  S
Sbjct: 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ------CNLAICLMHMNRV 208
           ++  +  L N+A +Y +  + +MA ++++KA  +  +            L+  L    + 
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277

Query: 209 TEAKSLL-QAVKIS 221
            +A   + + +   
Sbjct: 278 QKAFQFIEEGLDHI 291

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 146 QGKKIQITVEQEKSRI---LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC------ 196
           Q   I         R    L  +A  Y    +++ A  +   AL L +D+          
Sbjct: 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225

Query: 197 -NLAICLMHMNRVTEAKSLL-QAVKIS 221
            N+A           A     +A K+S
Sbjct: 226 LNIANSYDRSGDDQMAVEHFQKAAKVS 252

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK------QC--NLAICL 202
            ++ + EK+     +A AY       ++  +  +AL +  +         Q    +A   
Sbjct: 133 FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192

Query: 203 MHMNRVTEA-KSLLQAVKIS 221
                  +A   L  A++++
Sbjct: 193 DDFKHYDKALPHLEAALELA 212

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 17/130 (13%)

Query: 94  MAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA---RSQGK-- 148
           + VV  Q      A +       + +E ++  + N      +  +   +    R   K  
Sbjct: 199 VGVVAFQNGEWKTAEKW----FLDALEKIKA-IGNEVTVDKWEPLLNNLGHVCRKLKKYA 253

Query: 149 ------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC 201
                 +  + +  + +     + + +    NFE A  Y+  AL L  D       L  C
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

Query: 202 LMHMNRVTEA 211
           +      +EA
Sbjct: 314 IEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEA-KSLLQA 217
            +   Y   NN ++AE+++ +ALS+      +       + +          A K  L A
Sbjct: 164 YIGLEYGLTNNSKLAERFFSQALSI----APEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219

Query: 218 VKI 220
           ++ 
Sbjct: 220 LEK 222

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 28/103 (27%)

Query: 161 ILGNLAWAYMQQNNFEMAEQYYRKALSL----GVDMNKQCNLAICLMHMNRVTEAKSLLQ 216
           ++ +LA  +    +F+M  +     +         +         L+ +N+  E   L  
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP---VHIGTLVELNKANELFYLSH 80

Query: 217 -AVKISAGNRQMDTSYS-----------------RSFERAIQM 241
             V +         S+                  R   +A  +
Sbjct: 81  KLVDL---YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 64/204 (31%)

Query: 64  QLIDKDPSRAVSLFWAAI-----NAGDRVDSALKD-----------------MAVVMKQL 101
           +L+D  PS  VS  W A+       G + + A +                          
Sbjct: 81  KLVDLYPSNPVS--WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138

Query: 102 DRSDEAIEARSGRIEEEIELLQN-------------KLKNIEEGIAFAGVKTKMARSQGK 148
              D+A+ A         +L++                 N +    F       A     
Sbjct: 139 SEHDQAMAAYF----TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF----FSQA----- 185

Query: 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ----------CNL 198
              +++  E   ++  +     Q   ++ AE+++  AL     +  +           NL
Sbjct: 186 ---LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242

Query: 199 AICLMHMNRVTEA-KSLLQAVKIS 221
                 + +  EA     QA+ + 
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLI 266

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 29/138 (21%)

Query: 94  MAVVMKQLDRSDEAIEARSGRIEEEIEL--------------LQNKLKNIEEGIAFAGVK 139
            A + + L  +D+A E+      + + +              L  +L    E +A     
Sbjct: 48  RAEIYQYLKVNDKAQES----FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA----- 98

Query: 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNL 198
                   K +             N      +Q  F +AE Y +++L+           L
Sbjct: 99  -----YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153

Query: 199 AICLMHMNRVTEAKSLLQ 216
           A   M   ++ +A    +
Sbjct: 154 ARTKMLAGQLGDADYYFK 171

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KS 213
            + S I   LA  YM+  ++  A      AL             A    ++    +A +S
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 214 LLQAVKISAGN 224
             QA+ I   +
Sbjct: 65  FRQALSIKPDS 75

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 33/212 (15%)

Query: 29  RKRISTPENNKKGDIFHVIHKVPSG--DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDR 86
              +     N   +       +            +   + +   +++  ++ + ++A   
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234

Query: 87  VDS-------ALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIELLQNK------LKNIEE 131
            D        AL    +     +   +A      S  +                 +N +E
Sbjct: 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE 294

Query: 132 GIA-FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV 190
               F     + A        + +  E      +    Y    +++ A++ ++KA SL  
Sbjct: 295 FFKFF-----QKA--------VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 191 DMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
           +       LA  L    + TE+     +    
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 22/189 (11%), Positives = 51/189 (26%), Gaps = 49/189 (25%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIA-- 134
               +A ++ +  +  E+         E                 +     + +  I   
Sbjct: 346 PYIQLACLLYKQGKFTESEAF----FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 135 ---------FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA 185
                       +   +    GK   +  +        +     + +  F  A +   KA
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQS-------SQDPTQLDEEKFNAAIKLLTKA 454

Query: 186 LSLGVDMNKQC-----NLAICLMHMNRVTEA-KSLLQAVKISAGNRQMDTSYS-RSFERA 238
             L    + +       LA   + M ++ EA +    +  +    R MD      +F  A
Sbjct: 455 CEL----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL---ARTMDEKLQATTFAEA 507

Query: 239 IQMLTELES 247
            ++   L +
Sbjct: 508 AKIQKRLRA 516

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 15/157 (9%)

Query: 79  AAINAGDRVDSALKDMAVVMKQLDRSDEAIE----ARSGRIEEEIELLQNKLK----NIE 130
                  R    L     +       D  +E      S   +    LL + L+      +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208

Query: 131 EGIAFAGVKTKMARSQGKKIQ------ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK 184
           EG   A      +      +         + +  +  L      +  +NN   A+   ++
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 185 ALSLGVDMNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
           +++L    N    LA+ L       E  K   +AV +
Sbjct: 269 SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-----CNLAICLM 203
            +  +  Q  +  L N    +    NF  A +YY+ A+ L    +        N++ C +
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYI 70

Query: 204 HMNRVTEA-KSLLQAVKI 220
               + +  +   +A++I
Sbjct: 71  STGDLEKVIEFTTKALEI 88

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 11/107 (10%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC-----NLAICLMHMNRVTEAKSLLQAV 218
           N++  Y+   + E   ++  KAL +               A     +   T+A   L  +
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTDAMFDLSVL 119

Query: 219 KISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVGDDQKNQ 265
            ++        S     ER +           L   E        + 
Sbjct: 120 SLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 32/203 (15%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL------ 121
              + A+S F AA++       A    A V   + +S  A+      + + I+L      
Sbjct: 40  GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD----LTKVIQLKMDFTA 95

Query: 122 -------LQNKLKNIEEGIAF--AGVKTKMARSQGKKIQITVEQ-EKSRILGNLAWAYMQ 171
                  L  K   ++E        +K+  + ++ K+ Q  + + ++ + L + A     
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155

Query: 172 QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKISAGNRQMDT 229
             ++  A  +  K L + V   + +   A C +      +A   L  A K+   N   + 
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN--TEA 213

Query: 230 SYSRS--------FERAIQMLTE 244
            Y  S         E ++  + E
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 23/178 (12%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL------ 121
            +P +A+S   AA    +    A   ++ +  QL   + ++      + E ++L      
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE----VRECLKLDQDHKR 246

Query: 122 ---LQNKLKNIEEGIAFAGVKTKMAR--------SQGKKIQITVEQEKSRILGNLAWAYM 170
                 ++K + + I  A    +  R            K + ++ +   R    +   + 
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306

Query: 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKISAGNRQ 226
           +      A +   + L +  D      + A   +      EA +    A + +  ++Q
Sbjct: 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 14/72 (19%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKAL---SLGVD-------MNKQCNLAICLMHMNRVT 209
            I  +       ++    +  Y        +  VD       +    +L        ++ 
Sbjct: 213 PIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR---SLGALYRRQGKLE 269

Query: 210 EAKSLL-QAVKI 220
            A +L   A + 
Sbjct: 270 AAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD-------MNKQCNLAICLMHMNRVT 209
           L  LA  Y  QN ++ A      AL+     LG D       +N   NLA+      +  
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN---NLAVLYGKRGKYK 102

Query: 210 EAKSLL-QAVKI 220
           EA+ L  +A++I
Sbjct: 103 EAEPLCKRALEI 114

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 15/67 (22%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD-------MNKQCNLAICLMHMNRVT 209
           L NLA     Q   E  E YYR+AL      LG D        N   NLA C +   +  
Sbjct: 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN---NLASCYLKQGKYQ 186

Query: 210 EAKSLLQ 216
           +A++L +
Sbjct: 187 DAETLYK 193

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS------LGVD-------MNKQCNLAICLMHMNRV 208
             NLA  Y++Q  ++ AE  Y++ L+       G              +        ++ 
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM---HAEEREESKDKR 228

Query: 209 TEAKSLLQ 216
            ++    +
Sbjct: 229 RDSAPYGE 236

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 64  QLIDKDPSRAVSLFWAAINAGDRVDSALK-DMAVVMKQLDRSDEAIEARSGRIEEEIELL 122
           Q I  +  R    +W  ++    + S L  ++A+  K+    D+A        +E ++  
Sbjct: 29  QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF----YKELLQKA 84

Query: 123 QNKLKNIEE-GIAFAGV-KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ-NNFEMAE 179
            N +  +E          + K A    +KI + +E +       L   Y       +   
Sbjct: 85  PNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQLEADNLAANIFLGNYYYLTAEQEKKKL 143

Query: 180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ-AVKI 220
           +   K LS    M   +    +  +   R  +A++ LQ  +  
Sbjct: 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 16/72 (22%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD-------MNKQCNLAICLMHMNRVT 209
           L NL   Y  Q  +E+A    ++AL       G D       +N    LA+     N+  
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN---ILALVYRDQNKYK 86

Query: 210 EAKSLL-QAVKI 220
           +A +LL  A+ I
Sbjct: 87  DAANLLNDALAI 98

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD-------MNKQCNLAICLMHMNRVT 209
           L  LA  Y  QN ++ A      AL+     LG D       +N   NLA+      +  
Sbjct: 72  LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN---NLAVLYGKRGKYK 128

Query: 210 EAKSLL-QAVKI 220
           EA+ L  +A++I
Sbjct: 129 EAEPLCKRALEI 140

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD-------MNKQCNLAICLMHMNRVT 209
           L NLA     Q  +E  E YY++AL      LG D        N   NLA C +   +  
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN---NLASCYLKQGKFK 212

Query: 210 EAKSLLQ 216
           +A++L +
Sbjct: 213 QAETLYK 219

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 14/72 (19%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKAL---SLGVD-------MNKQCNLAICLMHMNRVT 209
            I  +       +   +    +        +  VD       +    NL        +  
Sbjct: 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK---NLGALYRRQGKFE 295

Query: 210 EAKSLL-QAVKI 220
            A++L   A++ 
Sbjct: 296 AAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 160 RILGNLAWAYMQQNNFEMAEQYYRKALS------LGVD-------MNKQCNLAICLMHMN 206
           +   NLA  Y++Q  F+ AE  Y++ L+       G              +         
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM---HAEEREECKG 252

Query: 207 RVTEAKSLLQ 216
           +  +  S  +
Sbjct: 253 KQKDGTSFGE 262

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-------CNLAIC 201
           +      +  S I   L  AY    ++  A QY++  L+L   MN +        NL   
Sbjct: 76  QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135

Query: 202 LMHMNRVTEAKSLL-QAVKI--SAGNRQ 226
           L  M R  EA     + + +    G+R 
Sbjct: 136 LKVMGRFDEAAICCERHLTLARQLGDRL 163

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 45/150 (30%)

Query: 84  GDRVD--SALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIELLQNKLKNIEEGIAFAGVK 139
           GDR     A  ++      L + ++A E   R+  +  E+                 G +
Sbjct: 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-----------------GER 299

Query: 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC--- 196
              A+S                  +L   Y   + F  A +Y+ + L++  ++  +    
Sbjct: 300 EVEAQS----------------CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343

Query: 197 ----NLAICLMHMNRVTEAKSLL-QAVKIS 221
               +L      +     A     Q ++++
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ----- 195
           ++AR  G +          R   NL  +++    FE A ++Y++ L+L V++ ++     
Sbjct: 251 RIAREFGDRAAE------RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304

Query: 196 --CNLAICLMHMNRVTEAKSLL-QAVKI 220
              +L      ++    A     + + I
Sbjct: 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAI 332

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 38/181 (20%)

Query: 84  GDRVD--SALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIE-------------LLQNKL 126
            DR+    +  ++   +K + R DEA     R   +  ++               + +  
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179

Query: 127 KNIEEGIAFAGVKTKMARSQGK---------KIQITVEQEKS--RILGNLAWAYMQQNNF 175
                          +  +  +         K+   +    +  R  GNL   Y    +F
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239

Query: 176 EMAEQYYRKALSLGVDMNKQ-------CNLAICLMHMNRVTEAKSLL-QAVKI--SAGNR 225
           + A +++++ L +  +   +        NL    + + +  +A     + + +    G R
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299

Query: 226 Q 226
           +
Sbjct: 300 E 300

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 24/116 (20%)

Query: 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ----- 195
            +A+S   ++        ++  GNL         F+ A     + L     + +Q     
Sbjct: 114 TLAKSMNDRLGE------AKSSGNLGNTLKVMGRFDEAAICCERHL----TLARQLGDRL 163

Query: 196 ------CNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL 245
                  NL        +    ++  +              +   ++  ++++ +L
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF---YQENLKLMRDL 216

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEAKSLL- 215
           L           +      +++ A+  G +  +        L     ++    +A     
Sbjct: 51  LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110

Query: 216 QAVKI--SAGNRQ 226
             + +  S  +R 
Sbjct: 111 HDLTLAKSMNDRL 123

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 31/146 (21%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           A  ++  V         AI       E+ + L             +  + +  +  +A  
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHH----FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA-- 224

Query: 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-Q 195
                   +  + + +      + + GNLA  Y +Q   ++A   YR+A+ L        
Sbjct: 225 --------AYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 196 CNLAICLMHMNRVTEA-KSLLQAVKI 220
           CNLA  L     V EA      A+++
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRL 300

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 31/163 (19%)

Query: 73  AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL----------- 121
           A                 L  ++ +  Q  R D +           I+            
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF----STLAIKQNPLLAEAYSNL 73

Query: 122 --LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAE 179
             +  +   ++E I       + A        + ++ +      NLA A +   + E A 
Sbjct: 74  GNVYKERGQLQEAIEHY----RHA--------LRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
           Q Y  AL    D+   + +L   L  + R+ EA    L+A++ 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
           NLA A  ++ +   AE  Y  AL L         NLA        + EA +   +A+++
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 37/171 (21%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL------ 121
            D   AV  + +A+     +     D+  ++K L R +EA         + IE       
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC----YLKAIETQPNFAV 170

Query: 122 -------LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN 174
                  + N    I   I       + A        +T++        NL     +   
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHH----FEKA--------VTLDPNFLDAYINLGNVLKEARI 218

Query: 175 FEMAEQYYRKALSLGVD----MNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
           F+ A   Y +ALSL  +         NLA        +  A  +  +A+++
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHG---NLACVYYEQGLIDLAIDTYRRAIEL 266

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
           NLA    +Q N E A + YRKAL +  +      NLA  L    ++ EA     +A++I
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 30/130 (23%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           A  ++A  +K+     EA +         + L             ++ +  NIEE +   
Sbjct: 273 AYCNLANALKEKGSVAEAEDC----YNTALRLCPTHADSLNNLANIKREQGNIEEAVR-- 326

Query: 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-NKQ 195
                      K +++    E +    NLA    QQ   + A  +Y++A+ +     +  
Sbjct: 327 --------LYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376

Query: 196 CNLAICLMHM 205
            N+   L  M
Sbjct: 377 SNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 31/163 (19%)

Query: 73  AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL----------- 121
           A+  +  A+           ++A  +      + A++A        ++            
Sbjct: 86  AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA----YVSALQYNPDLYCVRSDL 141

Query: 122 --LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAE 179
             L   L  +EE  A             K I+   +   +    NL   +  Q    +A 
Sbjct: 142 GNLLKALGRLEEAKA----------CYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAI 189

Query: 180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
            ++ KA++L  +      NL   L        A  + L+A+ +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ---CNLAICLMHMNRVTEA-KSL 214
           +R+L N      +Q  +E A Q   +A    +   +     NL +  + M +  +A +  
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164

Query: 215 LQAVKI 220
            +++++
Sbjct: 165 EKSLRL 170

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 94  MAVVMKQLDRSDEAIEA--RSGRIE-EEIELLQN------KLKNIEEGIAFAGVKTKMAR 144
           +AVV +       A E   ++   +     +L N      + K  EE             
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ---------- 126

Query: 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203
              +  Q T+  E+SR+  NL    +Q      A++Y+ K+L L  +       +A  L 
Sbjct: 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186

Query: 204 HMNRVTEAKSLLQ 216
                  A+    
Sbjct: 187 KEREYVPARQYYD 199

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVD----MNKQCNLAICLMHMNRVTEA-KSLLQAV 218
            LA  +  +   ++A++ YRKAL+        +N   N    L    R  EA + LL+A 
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLN---NYGGFLYEQKRYEEAYQRLLEAS 132

Query: 219 KIS 221
           + +
Sbjct: 133 QDT 135

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDM-NKQCNLAICLMHMNRVTEA-KSLLQAVKIS 221
            L   Y+Q+ N E A+   RKAL +     +    LA+          A +   +A+   
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD 101

Query: 222 AGN 224
           + N
Sbjct: 102 SRN 104

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 21/185 (11%), Positives = 58/185 (31%), Gaps = 13/185 (7%)

Query: 37  NNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAV 96
             K GDI           +   + +  +  +     +++ F+          +  +    
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186

Query: 97  VMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ 156
             + ++      +      ++  E      +  EE +                    +++
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK------------NNEDEKLKE 234

Query: 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEA-KSLL 215
           + +  L +       +N+   A +  +KA+ L   +N    +A+ +   N  TE      
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFD 294

Query: 216 QAVKI 220
           +A+K+
Sbjct: 295 KALKL 299

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 57  YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDS-------ALKDMAVVMKQLDRSDEAIE 109
               +     D+  ++A  LF   ++  +  +        +L+   +     +    A E
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258

Query: 110 ARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169
                I++ IEL                                    +      +A   
Sbjct: 259 D----IKKAIEL----------------------------------FPRVNSYIYMALIM 280

Query: 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
             +N+      Y+ KAL L  + +    +       +    +A K   +A ++
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220
           NL+  Y+   + +   +   KAL L  D +K     A     + +  +A   L  + +
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSL 101

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 49/217 (22%)

Query: 41  GDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN----AGDRVD--SALKDM 94
           G+++H   K      P    +  + +      AV  +   ++     GDR     A  ++
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193

Query: 95  AVVMKQLDRSDEAIEA--RSGRIEEEIELLQNK------LKNIEEGIAFAGVKTKMARSQ 146
                 L    +A+ A  +   I +E     +K        N+  G A+           
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNL--GNAY--------IFL 240

Query: 147 GK------------KIQITVEQEKS--RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192
           G+             +   ++      +   +L   Y    ++E A  Y+ K L++  ++
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300

Query: 193 NKQ-------CNLAICLMHMNRVTEAKSLL-QAVKIS 221
           N +        +L      +    +A     + ++IS
Sbjct: 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-------CNLAIC 201
           ++     +  S I   L  AY   +++  A +Y+   L+L   +  Q        NL   
Sbjct: 37  QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96

Query: 202 LMHMNRVTEAKSLL-QAVKIS 221
           L  +    EA     + + IS
Sbjct: 97  LKVLGNFDEAIVCCQRHLDIS 117

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 35/180 (19%)

Query: 69  DPSRAVSLFWAA--INAGDRVD--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN 124
           D    VS F AA  +   D     +    +      L    +A+E              +
Sbjct: 24  DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE-----------YHHH 72

Query: 125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK 184
            L               +AR+ G ++        ++  GNL        NF+ A    ++
Sbjct: 73  DLT--------------LARTIGDQLGE------AKASGNLGNTLKVLGNFDEAIVCCQR 112

Query: 185 ALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE 244
            L +  ++N +   A  L ++  V  AK             +       + + A+    E
Sbjct: 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 31/160 (19%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           A   ++ +  QL   + ++      + E ++L             ++   K IE      
Sbjct: 190 AFYKISTLYYQLGDHELSLSE----VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245

Query: 137 GVKTKMAR--------SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
               +  R            K + +V +   R    +   + +      A +   + L +
Sbjct: 246 ----RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

Query: 189 GVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKISAGNRQ 226
             D      + A   +      EA +    A + +  ++Q
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL------ 121
              + A+S F AA++       A    A V   + +S  A+      + + I L      
Sbjct: 17  GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD----LTKVIALKMDFTA 72

Query: 122 -------LQNKLKNIEEGIAF---AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171
                  L  K   ++E               + + +     V+ ++ + L + A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 172 QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKISAGN 224
             ++  A  +  K L + V   + +   A C +      +A   L  A K+ + N
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 18/177 (10%), Positives = 47/177 (26%), Gaps = 33/177 (18%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE---IELLQN 124
            D + A++     +          +  A    +     +AI       + +    E    
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193

Query: 125 ------KLKNIEEGIAFAG---------VKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169
                 +L + E  ++             +      Q KK+   +E          A   
Sbjct: 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES---------AEEL 244

Query: 170 MQQNNFEMAEQYYRKALSL-----GVDMNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
           ++   +  A   Y   +          +  +  +  C     +  EA +   + +++
Sbjct: 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 12/127 (9%), Positives = 28/127 (22%), Gaps = 27/127 (21%)

Query: 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-------CNLAICLMHMNR 207
               S     L + Y   + F+ A   ++                     + +       
Sbjct: 22  PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81

Query: 208 VTEAKSLL-QAVKISA--GNRQMDTSYS-----------RSFERAIQMLTELESPSVLKL 253
              A+    +  ++ A      +  S +                A Q   +      L  
Sbjct: 82  WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK-----SLVY 136

Query: 254 TELEVGD 260
            + +  D
Sbjct: 137 AQ-QADD 142

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 32/164 (19%)

Query: 69  DPSRAVSLFWAAIN----AGDRVD--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL 122
               A + F A       +GD      AL  + +V +     D A         EE ELL
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARR----CFLEERELL 96

Query: 123 QNKLKNIEEGIAFA----GVKTKMARSQGK--------------KIQITVEQEKSRILGN 164
              L       +           +A   G                 Q   +   +     
Sbjct: 97  A-SLPEDPLAASANAYEVAT---VALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152

Query: 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRV 208
           L     Q+ N   A+Q++ +A  +  ++     +   +  +N +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGL 196

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 38/171 (22%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN--- 124
            +   A+S    A+  G  + +  K ++    ++  +   +      +++ IE  Q    
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD----LKKTIEYYQKSLT 107

Query: 125 ---------KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNF 175
                    KL+N E+ +               +  +    EK+         Y  ++++
Sbjct: 108 EHRTADILTKLRNAEKELK----------KAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155

Query: 176 EMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEA-KSLLQAVKI 220
             A + Y + +        +      N A  L  +    EA     +A++ 
Sbjct: 156 PNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 49/217 (22%)

Query: 41  GDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN----AGDRVD--SALKDM 94
           G+++H   K      P    +  + +      AV L+   ++     GDR     A  ++
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189

Query: 95  AVVMKQLDRSDEAIEA--RSGRIEEEIELLQNK------LKNIEEGIAFAGVKTKMARSQ 146
                 L    +A+ A  +   I +E     +K        N+  G A+           
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNL--GNAY--------IFL 236

Query: 147 GK------------KIQITVEQEKS--RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192
           G+             +   ++      +   +L   Y    ++E A  Y+ K L++  ++
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296

Query: 193 NKQC-------NLAICLMHMNRVTEAKSLL-QAVKIS 221
             +        +L      +    +A     + ++IS
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-------CNLAIC 201
           ++     +  S I   L  AY   +++  A +Y+   L+L   +  Q        NL   
Sbjct: 33  QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92

Query: 202 LMHMNRVTEAKSLL-QAVKIS 221
           L  +    EA     + + IS
Sbjct: 93  LKVLGNFDEAIVCCQRHLDIS 113

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAI 200
            +AR+ G ++        ++  GNL        NF+ A    ++ L +  ++N +   A 
Sbjct: 71  TLARTIGDQLGE------AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124

Query: 201 CLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQM 241
            L ++  V  AK             +       + + A+ +
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEAKSLLQAV 218
            LA  +++ +N   A   + + +      +        +L      ++R  +A       
Sbjct: 12  ALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 219 KISAGNRQMDTSYSRSFERAIQMLTELE 246
            I     +         + A      LE
Sbjct: 68  -IEVAREEGTQKDLSELQDAKLKAEGLE 94

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 39/167 (23%)

Query: 84  GDRVD--SALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIELLQNK---LKNIEEGIAFA 136
           G R     A  ++      L    +A+ A  +   I +E      +     N+  G A+ 
Sbjct: 3   GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNL--GNAY- 59

Query: 137 GVKTKMARSQGK------------KIQITVEQEKS--RILGNLAWAYMQQNNFEMAEQYY 182
                     G+             +   ++      +   +L   Y    ++E A  Y+
Sbjct: 60  -------IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 112

Query: 183 RKALSLGVDMNKQC-------NLAICLMHMNRVTEAKSLL-QAVKIS 221
            K L++  ++  +        +L      +    +A     + ++IS
Sbjct: 113 LKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK-SLLQAVKIS 221
            L   Y +   F+ A  + R AL      +     L   L        A+ +    +  +
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 222 AGN 224
              
Sbjct: 84  QSR 86

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMNKQCNLAICLMHMNRVTEA-KSLLQAVK 219
           L NLA    +Q N E A + YRKAL +         NLA  L    ++ EA     +A++
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 220 I 220
           I
Sbjct: 72  I 72

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSL-GVDMNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
           NLA    QQ   + A  +Y++A+ +     +   N+   L  M  V  A +   +A++I
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 17/160 (10%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 80  AINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK------ 127
           A               +L+++++V++QL       +  S  + + +   +  ++      
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSG--DEHSRHVMDSVRQAKLAVQMDVLDG 213

Query: 128 ----NIEEGIAFAGVKTKMARSQG----------KKIQITVEQEKS-RILGNLAWAYMQQ 172
                +  G A+  +     ++            +  ++  +   +  +  N A  +  +
Sbjct: 214 RSWYIL--GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE 271

Query: 173 NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA 211
            ++  A + + +A +L     + Q      L  ++R+T  
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTE---AKSLLQAVK 219
            L   Y ++ +   A   +  AL+   +     NL++ L  +   +    ++ ++ +V+
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
                Y      + AE   ++AL+L      +  LA   + M R+ EA     +A++ 
Sbjct: 123 QRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
            L         ++ A   + +AL       +    LA   + +  V  A ++    V  
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 34/139 (24%)

Query: 94  MAVVMKQLDRSDEAIEARSGRIEEEIELLQ--------------------NKLKNIEEGI 133
           ++     L R  E  E   G +E+ + +L+                      L   ++  
Sbjct: 79  LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138

Query: 134 AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193
           A          S  + + +   ++   I   LA  Y+     + A   Y KAL       
Sbjct: 139 A----------SLKQALAL---EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185

Query: 194 K-QCNLAICLMHMNRVTEA 211
             +   A  L+   +  EA
Sbjct: 186 DLRVRYASALLLKGKAEEA 204

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSL-GVDMNKQCNLAICLMHMNRVTEA-KSLLQAVKI 220
           +L     +     +A      A  L   D+     LA+   + +    A  SL   +  
Sbjct: 56  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 13/147 (8%), Positives = 36/147 (24%), Gaps = 31/147 (21%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           A+       + L+     +      + +   L              +  L+ ++  +   
Sbjct: 312 AIASNGGGKQALETVQRLLPV----LCQAHGLTPQQVVAIASHDGGKQALETVQRLLP-- 365

Query: 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-MNKQ 195
                      +   +T EQ     + +           +       +A  L  + +   
Sbjct: 366 --------VLCQAHGLTPEQ--VVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415

Query: 196 CNLAICLMHMNRVTEA-KSLLQAVKIS 221
            +       +  V      L QA  ++
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 12/147 (8%), Positives = 34/147 (23%), Gaps = 31/147 (21%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           A+       + L+     +      + +   L              +  L+ ++  +   
Sbjct: 244 AIASNGGGKQALETVQRLLPV----LCQAHGLTPQQVVAIASNSGGKQALETVQRLLP-- 297

Query: 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-Q 195
                      +   +T +Q     + +           +       +A  L        
Sbjct: 298 --------VLCQAHGLTPQQ--VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347

Query: 196 CNLAICLMHMNRVTEA-KSLLQAVKIS 221
            +       +  V      L QA  ++
Sbjct: 348 ASHDGGKQALETVQRLLPVLCQAHGLT 374

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSL-GVDMNKQCNLAICLMHMN---RVTEAKSLL-QAV 218
            L   Y+ QN++  +   YR+AL L G +      LA  L +        + ++++ +A+
Sbjct: 49  LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108

Query: 219 KISAGN 224
            + +  
Sbjct: 109 ALDSNE 114

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 36/172 (20%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL------ 121
            + + A+ +F                 AV   +L + D A +        ++        
Sbjct: 17  NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE-TYFSKVNATKAKSA 75

Query: 122 -------LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN 174
                  +  K       I                +    +  +  + G +   +  + N
Sbjct: 76  DFEYYGKILMKKGQDSLAIQ----------QYQAAVDR--DTTRLDMYGQIGSYFYNKGN 123

Query: 175 FEMAEQYYRKALSLGVDMNKQ-----CNLAICLMHMNRVTEA-KSLLQAVKI 220
           F +A QY  K +                L     +     +A  S ++ +++
Sbjct: 124 FPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 17/100 (17%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAICLMHMNRVTEAKSLL- 215
           N+A A +    FE AE    +       +            L        R ++A+ +L 
Sbjct: 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317

Query: 216 QAVKISAGNRQMDTSYSRSF----ERAIQMLTELESPSVL 251
            A+K++       T +   F    E   Q L +L   + L
Sbjct: 318 DALKLANR-----TGFISHFVIEGEAMAQQLRQLIQLNTL 352

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK------QCNLAICLMHMNRVTEA-KSLLQ 216
            L       N  + A   Y +AL +              N+A+   +M++   A K L++
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 217 AVKISAGNRQMDTSYSRSFERAI 239
           A+ +  G        SR   R++
Sbjct: 266 AIYMQVGGTTPTGEASREATRSM 288

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRV 208
           E+   ++  N A A    + +E +     KA+ +   +N    +          
Sbjct: 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 90  ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL-------------LQNKLKNIEEGIAFA 136
           AL  +AV         +A EA    ++  I+                   + + +    +
Sbjct: 135 ALMALAVSYTNTSHQQDACEA----LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ- 195
            V   +     +      +     +   L   +     F  A   +  AL++      + 
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV----RPED 246

Query: 196 ----CNLAICLMHMNRVTEA-KSLLQAVKI 220
                 L   L + +R  EA ++  +A++I
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEI 276

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
            L    ++    ++A  Y ++A+ L  +  + +    +CL +   + EA        + 
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.68
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.66
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.65
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.62
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.62
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.61
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.58
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.58
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.57
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.57
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.56
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.54
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.51
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.49
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.48
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.46
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.43
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.39
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.37
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.33
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.33
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.29
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.27
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.26
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.22
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.2
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.1
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.03
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.02
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.02
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.99
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.89
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.86
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.83
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.76
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.73
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.63
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.27
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.21
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.13
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.97
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.59
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.08
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.74
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.61
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.53
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.42
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.99
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.67
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.29
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.82
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.12
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.84
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.75
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.0
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.38
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.1
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.2
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	86.66
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.01
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.26

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=1e-18  Score=159.39  Aligned_cols=159  Identities=11%  Similarity=0.076  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      -|...+..+...|++++|+.+|+++|+.+|++..++++||.+|..+|++++|+..+...+....           .....
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~   75 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-----------TSAEA   75 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------CCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----------hhHHH
Confidence            4667788889999999999999999999999999999999999999999999998655433211           11111


Q ss_pred             HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                      +..++..+...++        ..++.++|++..++..+|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            2222222222222        3457789999999999999999999999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCC
Q 038048          207 RVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n  225 (575)
                      ++++|+.+|+++++++|++
T Consensus       156 ~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          156 LRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             CHHHHHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHhCCccC
Confidence            9999999999999998853

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=1.7e-17  Score=158.48  Aligned_cols=163  Identities=18%  Similarity=0.088  Sum_probs=135.9

Q ss_pred             CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           52 SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        52 s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      .....+...+..+...+++++|+..|+++++.+|++..+++++|.+|.++|++++|+..+..+++...           .
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-----------~   71 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-----------R   71 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------T
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C
Confidence            33445666777888999999999999999999999999999999999999999999999766554322           2


Q ss_pred             HHHHHhHHHHHHHHh-----------ch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048          132 GIAFAGVKTKMARSQ-----------GK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       132 a~a~~~nla~al~sq-----------g~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn  192 (575)
                      ....+.+++.++...           |+        ..++.++|++..+++++|.+|..+|++++|+..|++|++++ ++
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~  150 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT  150 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence            222233333333333           33        45688899999999999999999999999999999999999 88


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          193 NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       193 ~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +. +++||.+|..+|++++|+..|+++++++|++.
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            88 99999999999999999999999999999764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.71  E-value=6.8e-17  Score=183.82  Aligned_cols=159  Identities=19%  Similarity=0.171  Sum_probs=130.6

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ..|...+.++...|++++|+.+|++||+++|++..++++||.+|.++|++++|++++.++++.           .+....
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----------~P~~~~   78 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----------SPTFAD   78 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHH
Confidence            456677788899999999999999999999999999999999999999999999997665442           233334


Q ss_pred             HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                      .+.+++.++...|+        ++++.++|++..++++||.+|..+|++++|+.+|++||+++|++.. ++|||.+|..+
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            45566666666665        4567788888888888888888888888888888888888888888 88888888888


Q ss_pred             CCHHHHHHHHHHHHHHcCC
Q 038048          206 NRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       206 Gr~eEAi~lLekALel~P~  224 (575)
                      |++++|++.+++++++.|+
T Consensus       159 g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          159 CDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             TCCTTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhChh
Confidence            8888888888888887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.70  E-value=6.7e-16  Score=145.77  Aligned_cols=143  Identities=13%  Similarity=0.042  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGD-RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI  133 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p-~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~  133 (575)
                      ..+...+..++..+++++|+.+|.+++..+| .+..+++++|.+|..+|++++|+..+..+++.           .+...
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----------NYNLA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TCSHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----------CcchH
Confidence            3456677888899999999999999999998 88889999999999999999999985543321           11112


Q ss_pred             HHHhHHHHHHHHhch--------hhHHhhcCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-H
Q 038048          134 AFAGVKTKMARSQGK--------KIQITVEQEKS-------RILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-Q  195 (575)
Q Consensus       134 a~~~nla~al~sqg~--------k~aL~L~Pd~~-------~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~  195 (575)
                      ..+..++.++...|+        +.++.++|++.       .+++++|.++..+|++++|+.+|++|++++|+  +.. +
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  156 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL  156 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence            223333333333333        23344555555       34555566666666666666666666666665  555 5


Q ss_pred             HHHHHHHHHcCCH
Q 038048          196 CNLAICLMHMNRV  208 (575)
Q Consensus       196 ~NLA~iy~~qGr~  208 (575)
                      ++||.+|..+|+.
T Consensus       157 ~~l~~~~~~~~~~  169 (228)
T 4i17_A          157 YSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5566666555555

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.70  E-value=1.4e-15  Score=152.76  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=40.8

Q ss_pred             HHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          151 QITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       151 aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++.+.|+  +..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++
T Consensus       203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            3444555  4555555555555555555555555555555555555 5555555555555555555555555555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=5.2e-16  Score=155.78  Aligned_cols=174  Identities=17%  Similarity=0.139  Sum_probs=124.5

Q ss_pred             CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH-----------------
Q 038048           53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI-----------------  115 (575)
Q Consensus        53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL-----------------  115 (575)
                      ....+...+.++...+++++|+.+|++++..+|.+..++++||.+|..+|++++|+.++...+                 
T Consensus        98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  177 (365)
T 4eqf_A           98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP  177 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence            333444455555566666666666666666666666666666666666666666666633322                 


Q ss_pred             ----------------HHHHHHHHHHHHhhHH--HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHH
Q 038048          116 ----------------EEEIELLQNKLKNIEE--GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus       116 ----------------eeAi~lL~~~L~l~~~--a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                                      ++++..+...+...+.  ....+.+++.++...|+        +.++.+.|++..+++++|.+|
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  257 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL  257 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                            2233333333333222  33455667777777666        346778899999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++++.|++.
T Consensus       258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence            9999999999999999999999998 99999999999999999999999999998765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=5.2e-16  Score=157.43  Aligned_cols=177  Identities=15%  Similarity=0.095  Sum_probs=128.6

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH------------------
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR------------------  111 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~------------------  111 (575)
                      .|.....+...+..+...|++++|+.+|++++..+|++..+++++|.+|...|++++|+..+                  
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  142 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG  142 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34444455566666777788888888888888888888778888888888888888887763                  


Q ss_pred             -----hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHH
Q 038048          112 -----SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMA  178 (575)
Q Consensus       112 -----~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEA  178 (575)
                           .+.+++++..+...+...+.....+.+++..+...|+        +.++.++|++..++.++|.+|...|++++|
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence                 2444555555555554444444455666666666665        345677888888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +..|++++.++|++.. +.++|.+|..+|++++|+.+|+++++++|++.
T Consensus       223 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  271 (388)
T 1w3b_A          223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP  271 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred             HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            8888888888888887 78888888888888888888888888877654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=2.8e-17  Score=148.89  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=115.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ++...+++++|+..|++++..+|..+.++++||.+|.++|+|++|++++..                             
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~-----------------------------   56 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICT-----------------------------   56 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHH-----------------------------
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------------
Confidence            334456899999999999999998888999999999999999999998543                             


Q ss_pred             HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 038048          143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL-LQAVKI  220 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l-LekALe  220 (575)
                              ++.++|+++.+|++||.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|... ++++++
T Consensus        57 --------al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           57 --------YINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             --------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             --------HHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                    35679999999999999999999999999999999999999999 99999999999999887765 699999


Q ss_pred             HcCCCC
Q 038048          221 SAGNRQ  226 (575)
Q Consensus       221 l~P~n~  226 (575)
                      ++|+++
T Consensus       129 l~P~~~  134 (150)
T 4ga2_A          129 LFPGSP  134 (150)
T ss_dssp             HSTTCH
T ss_pred             hCcCCH
Confidence            999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=1.2e-16  Score=147.45  Aligned_cols=127  Identities=16%  Similarity=0.115  Sum_probs=113.0

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048           75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV  154 (575)
Q Consensus        75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L  154 (575)
                      ..|++++.++|++..+++++|.+|.++|++++|+.++..                                     ++.+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------------------------------------al~~   65 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF-------------------------------------LCIY   65 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHh
Confidence            456788889999999999999999999999999998544                                     3567


Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHH
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSR  233 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~  233 (575)
                      +|+++.+|++||.+|..+|+|++|+.+|++|++++|+++. +++||.+|..+|++++|+..|++++++.|+..       
T Consensus        66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-------  138 (151)
T 3gyz_A           66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-------  138 (151)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------
T ss_pred             CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-------
Confidence            9999999999999999999999999999999999999999 99999999999999999999999999988532       


Q ss_pred             HHHHHHHHHHHh
Q 038048          234 SFERAIQMLTEL  245 (575)
Q Consensus       234 slerA~elL~el  245 (575)
                      -.++|+.++..+
T Consensus       139 ~~~~A~~ll~~l  150 (151)
T 3gyz_A          139 LKIKAQSYLDAI  150 (151)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            345666666543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=4.4e-15  Score=139.38  Aligned_cols=143  Identities=14%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-------DSALKDMAVVMKQLDRSDEAIEARSGRIE-------------  116 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-------~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------  116 (575)
                      +...+..+...+++++|+.+|++++..+|..       ..+++.+|.+|...|++++|+.++...+.             
T Consensus        41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  120 (258)
T 3uq3_A           41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN  120 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhH
Confidence            3334444455555555555555555554433       34555555555555555555555333322             


Q ss_pred             --HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          117 --EEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       117 --eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                        +++..+..                          ++.++|....++.++|.+|..+|++++|+.+|+++++++|++..
T Consensus       121 ~~~a~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  174 (258)
T 3uq3_A          121 AEKELKKAEA--------------------------EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR  174 (258)
T ss_dssp             HHHHHHHHHH--------------------------HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHH--------------------------HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence              11122222                          23345555555555666666666666666666666666655555


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          195 -QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       195 -~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                       ++++|.+|..+|++++|+.+|+++++.+|++
T Consensus       175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence             5555666666666666666666665555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=1.2e-15  Score=154.72  Aligned_cols=177  Identities=19%  Similarity=0.189  Sum_probs=144.1

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc----------------
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG----------------  113 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g----------------  113 (575)
                      .|.....+...+..+...|++++|+..|++++..+|+...++..+|.++..+|++++|+.++..                
T Consensus        97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  176 (388)
T 1w3b_A           97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG  176 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3444445666667777788888898888888888888888888888888888888888887433                


Q ss_pred             -------CHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHH
Q 038048          114 -------RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMA  178 (575)
Q Consensus       114 -------aLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEA  178 (575)
                             .+++++..+...+...+.....+.+++..+...++        ..++.++|++..+++++|.+|..+|++++|
T Consensus       177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  256 (388)
T 1w3b_A          177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence                   34445555555555444445566677777777666        346788999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.+|+++++++|+++. +.+||.+|..+|++++|+.+|++++++.|.+.
T Consensus       257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence            9999999999999999 99999999999999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.68  E-value=7.2e-15  Score=146.25  Aligned_cols=75  Identities=13%  Similarity=0.117  Sum_probs=42.8

Q ss_pred             HHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          151 QITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       151 aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++.++|+  ...+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|++
T Consensus       207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  284 (368)
T 1fch_A          207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  284 (368)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3444555  4555555555555555555555555555555555555 5555555555555555555555555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=3.3e-16  Score=142.04  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHH
Q 038048           73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQI  152 (575)
Q Consensus        73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL  152 (575)
                      +...|++++.++|....+++++|.++..+|++++|+.++..                                     ++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al   48 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQA-------------------------------------LC   48 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHH-------------------------------------HH
Confidence            34568899999999999999999999999999999998533                                     35


Q ss_pred             hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048          153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY  231 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~  231 (575)
                      .++|++..+++++|.+|..+|++++|+.+|++|++++|+++. ++++|.+|..+|++++|+.+|++++++.|+++.   +
T Consensus        49 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  125 (148)
T 2vgx_A           49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE---F  125 (148)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG---G
T ss_pred             HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc---c
Confidence            679999999999999999999999999999999999999999 999999999999999999999999999997652   2


Q ss_pred             HHHHHHHHHHHHHhccc
Q 038048          232 SRSFERAIQMLTELESP  248 (575)
Q Consensus       232 l~slerA~elL~ele~a  248 (575)
                      .....++..++..+...
T Consensus       126 ~~~~~~~~~~l~~l~~~  142 (148)
T 2vgx_A          126 XELSTRVSSMLEAIKLK  142 (148)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHhH
Confidence            34456677777665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.67  E-value=1.4e-15  Score=144.20  Aligned_cols=112  Identities=16%  Similarity=0.046  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKD----------------MAVVMKQLDRSDEAIEARSGRIEEEIEL  121 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~n----------------LA~iy~qqGrydEAie~~~gaLeeAi~l  121 (575)
                      ...+...+..|++++|+.+|++++..+|++..+++.                +|.+|..+|++++|+..+..        
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------   79 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE--------   79 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence            344566788999999999999999999999999999                99999999999999998544        


Q ss_pred             HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048          122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI  200 (575)
Q Consensus       122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~  200 (575)
                                                   ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.
T Consensus        80 -----------------------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~  130 (208)
T 3urz_A           80 -----------------------------LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN  130 (208)
T ss_dssp             -----------------------------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -----------------------------HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                                         35668888889999999999999999999999999999999888 888888


Q ss_pred             HHHHcC
Q 038048          201 CLMHMN  206 (575)
Q Consensus       201 iy~~qG  206 (575)
                      +|..+|
T Consensus       131 ~~~~~~  136 (208)
T 3urz_A          131 YYYLTA  136 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            775554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.66  E-value=1.1e-15  Score=145.99  Aligned_cols=166  Identities=14%  Similarity=0.063  Sum_probs=123.5

Q ss_pred             hhhHh-hcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----------CCHHHHHHH
Q 038048           43 IFHVI-HKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL-----------DRSDEAIEA  110 (575)
Q Consensus        43 ~y~~~-~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq-----------GrydEAie~  110 (575)
                      .|... ...|.....+...+.++...|++++|+..|+++++++|++..++++||.+|..+           |++++|+..
T Consensus        27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            34433 344555556667778888999999999999999999999999999999999999           999999988


Q ss_pred             HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038048          111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYY  182 (575)
Q Consensus       111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~y  182 (575)
                      +..+++.           .+.....+.+++.++...|+        +.++.++ +++.+++++|.+|..+|++++|+..|
T Consensus       107 ~~~al~~-----------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A          107 LKDAERV-----------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHh-----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6555443           33333445556666666665        3567788 88999999999999999999999999


Q ss_pred             HHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          183 RKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI  220 (575)
Q Consensus       183 rkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe  220 (575)
                      +++++++|++.. +++||.+|..+|++++|+..|+++-.
T Consensus       175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999999 99999999999999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.66  E-value=8.2e-16  Score=135.99  Aligned_cols=109  Identities=13%  Similarity=0.100  Sum_probs=100.5

Q ss_pred             HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH
Q 038048           81 INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR  160 (575)
Q Consensus        81 L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~  160 (575)
                      ..++|+.+.++.++|.+|.++|+|++|+..+..                                     ++.++|++..
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~   48 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNE-------------------------------------AVKRDPENAI   48 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCCHH
Confidence            356788888999999999999999999998544                                     3567999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++++|.+|..+|++++|+..|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999999999999999 99999999999999999999999999999865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.66  E-value=1.1e-14  Score=141.75  Aligned_cols=202  Identities=6%  Similarity=-0.036  Sum_probs=141.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHH-----------------------hcCH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEAR-----------------------SGRI  115 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~-----------------------~gaL  115 (575)
                      .+..+...+++++|+.+|.+++..+|.+..+++.+|.++...| ++++|+.++                       .+.+
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  141 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH  141 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence            3344566678888888888888888888888888888888888 888888772                       3344


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          116 EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS  187 (575)
Q Consensus       116 eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe  187 (575)
                      ++++..+...+...+.....+..++.++...|+        ..++.+.|++..+++++|.+|..+|++++|+.+|+++++
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            445555555554333323334445666665555        345777888888888999999999999999999999988


Q ss_pred             hC---------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCc
Q 038048          188 LG---------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKL  253 (575)
Q Consensus       188 id---------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p  253 (575)
                      +.         |.... +.++|.+|..+|++++|+.+|++++++.|++....    ......++..+++..++.++.+.|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            86         55566 88889999999999999999999998888764211    112233445556666666777777


Q ss_pred             ccccccch
Q 038048          254 TELEVGDD  261 (575)
Q Consensus       254 ~~~e~~~~  261 (575)
                      .....+..
T Consensus       302 ~~~~~~~~  309 (330)
T 3hym_B          302 DDTFSVTM  309 (330)
T ss_dssp             CCHHHHHH
T ss_pred             CchHHHHH
Confidence            66654444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.65  E-value=2.9e-15  Score=157.91  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      .|...+.++...+++++|+.+|+++|.++|++..+++++|.+|..+|+ +++|+.++..++.           ..+....
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-----------l~P~~~~  167 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-----------EQPKNYQ  167 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------HCTTCHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----------HCCCCHH
Confidence            344556667778999999999999999999999999999999999997 9999998655433           2223334


Q ss_pred             HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Q 038048          135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH-  204 (575)
Q Consensus       135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~-  204 (575)
                      .+.+++.++...|+        ..++.++|++..+|+++|.+|..+|++++|+.+|+++|+++|++.. ++++|.+|.. 
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            44555555555555        4567778888888888888888888888888888888888888887 8888888887 


Q ss_pred             cCCHHHH-----HHHHHHHHHHcCCCC
Q 038048          205 MNRVTEA-----KSLLQAVKISAGNRQ  226 (575)
Q Consensus       205 qGr~eEA-----i~lLekALel~P~n~  226 (575)
                      .|.+++|     +.+|++++.++|++.
T Consensus       248 ~~~~~eA~~~~el~~~~~Al~l~P~~~  274 (382)
T 2h6f_A          248 TGYNDRAVLEREVQYTLEMIKLVPHNE  274 (382)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHCCCCH
Confidence            5554777     477888888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.64  E-value=6.4e-15  Score=143.29  Aligned_cols=178  Identities=13%  Similarity=0.061  Sum_probs=147.1

Q ss_pred             cCCCCCcHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH----------------
Q 038048           49 KVPSGDSPYVRAKHIQLIDK-DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR----------------  111 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~k-d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~----------------  111 (575)
                      ..|.....+...+..+...+ ++++|+.+|++++..+|....++..+|.+|...|++++|+.++                
T Consensus        85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  164 (330)
T 3hym_B           85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY  164 (330)
T ss_dssp             HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence            44555556666777778888 9999999999999999999999999999999999999999883                


Q ss_pred             -------hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc---------CCcHHHHHHHHH
Q 038048          112 -------SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE---------QEKSRILGNLAW  167 (575)
Q Consensus       112 -------~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~---------Pd~~~a~~nLG~  167 (575)
                             .+.+++++..+...+...+.....+..++..+...|+        ..++.+.         |....++.++|.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~  244 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH  244 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence                   3445556666666665555555566777777777776        2334443         666789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            999999999999999999999999999 99999999999999999999999999999764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=3.3e-15  Score=139.67  Aligned_cols=156  Identities=8%  Similarity=0.012  Sum_probs=79.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      ..+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++..           +.....+..
T Consensus        62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~  130 (243)
T 2q7f_A           62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----------MENGDLFYM  130 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------CCSHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------CCCHHHHHH
Confidence            334444555566666666666666555555555566666666666666655533322211           001111222


Q ss_pred             HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                      ++.++...|+        ..++.+.|++..++..+|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|+++
T Consensus       131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  210 (243)
T 2q7f_A          131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE  210 (243)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence            2222222222        1234445555555555555555555555555555555555555555 555555555555555


Q ss_pred             HHHHHHHHHHHHcCCC
Q 038048          210 EAKSLLQAVKISAGNR  225 (575)
Q Consensus       210 EAi~lLekALel~P~n  225 (575)
                      +|+.+|++++++.|++
T Consensus       211 ~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          211 KALEMLDKAIDIQPDH  226 (243)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHccCcch
Confidence            5555555555555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.64  E-value=1.3e-14  Score=140.40  Aligned_cols=186  Identities=16%  Similarity=0.020  Sum_probs=134.2

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      ..+...+..++..+++++|+.+|++++...|.+   ..+++.+|.+|..+|++++|+..+...+......        ..
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~   87 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--------PR   87 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------TT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------ch
Confidence            345566677888999999999999999999988   8899999999999999999999966655431100        00


Q ss_pred             HHHHHhHHHHHHHH--------hch--------hhHHhhcCCcHHHH-----------------HHHHHHHHHcCCHHHH
Q 038048          132 GIAFAGVKTKMARS--------QGK--------KIQITVEQEKSRIL-----------------GNLAWAYMQQNNFEMA  178 (575)
Q Consensus       132 a~a~~~nla~al~s--------qg~--------k~aL~L~Pd~~~a~-----------------~nLG~aY~~qGryeEA  178 (575)
                      ....+..++.++..        .|+        ..++...|++..+.                 +++|.+|..+|++++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            01122233333333        222        23466677665444                 8899999999999999


Q ss_pred             HHHHHHHHHhCCCC---HH-HHHHHHHHHHc----------CCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048          179 EQYYRKALSLGVDM---NK-QCNLAICLMHM----------NRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE  244 (575)
Q Consensus       179 e~~yrkALeidPdn---~~-~~NLA~iy~~q----------Gr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e  244 (575)
                      +.+|+++++.+|++   .. ++++|.+|..+          |++++|+.+|+++++..|++.........+......+.+
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence            99999999999985   34 88999999977          999999999999999999865322233333444444444


Q ss_pred             hccc
Q 038048          245 LESP  248 (575)
Q Consensus       245 le~a  248 (575)
                      ++..
T Consensus       248 ~~~~  251 (261)
T 3qky_A          248 LEGD  251 (261)
T ss_dssp             HHTC
T ss_pred             hhhh
Confidence            4433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.64  E-value=3.7e-15  Score=159.74  Aligned_cols=160  Identities=14%  Similarity=0.018  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048           55 SPYVRAKHIQLIDKDP-SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI  133 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~-eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~  133 (575)
                      ..+...+..+...+++ ++|+.+|+++++++|.+..++++||.+|..+|++++|+.++..+++....            .
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~  170 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------------K  170 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC------------H
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------H
Confidence            3445566667778999 99999999999999999999999999999999999999997665543221            1


Q ss_pred             HHHhHHHHHHHHh---------ch--------hhHHhhcCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 038048          134 AFAGVKTKMARSQ---------GK--------KIQITVEQEKSRILGNLAWAYMQQ--------NNFEMAEQYYRKALSL  188 (575)
Q Consensus       134 a~~~nla~al~sq---------g~--------k~aL~L~Pd~~~a~~nLG~aY~~q--------GryeEAe~~yrkALei  188 (575)
                      ..+.+++.++...         |+        +.++.++|++..++++||.+|..+        |++++|+.+|++|+++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            2233333333333         33        356888999999999999999999        9999999999999999


Q ss_pred             CC---CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          189 GV---DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       189 dP---dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|   ++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99   8999 99999999999999999999999999999865

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=1.6e-15  Score=134.81  Aligned_cols=132  Identities=14%  Similarity=0.108  Sum_probs=112.5

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048           75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV  154 (575)
Q Consensus        75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L  154 (575)
                      ..|++++..+|....+++.+|.++...|++++|+.++..                                     ++.+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------------------------al~~   47 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA-------------------------------------LCML   47 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------------------------HHHh
Confidence            567888899999999999999999999999999998533                                     3567


Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHH
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSR  233 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~  233 (575)
                      +|++..+++++|.+|..+|++++|+.+|++|+.++|+++. ++++|.+|..+|++++|+.+|++++++.|+++.   +..
T Consensus        48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  124 (142)
T 2xcb_A           48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA---HEA  124 (142)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG---GHH
T ss_pred             CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc---hHH
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999997652   233


Q ss_pred             HHHHHHHHHHHhc
Q 038048          234 SFERAIQMLTELE  246 (575)
Q Consensus       234 slerA~elL~ele  246 (575)
                      ...++..++..+.
T Consensus       125 ~~~~~~~~l~~l~  137 (142)
T 2xcb_A          125 LAARAGAMLEAVT  137 (142)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4455666665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-14  Score=136.48  Aligned_cols=136  Identities=13%  Similarity=0.106  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|.+++..+ .+..+++.+|.+|...|++++|+.++...++.....               
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------   71 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM---------------   71 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---------------
Confidence            4456677788999999999999999999 888999999999999999999999865543321110               


Q ss_pred             hHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Q 038048          137 GVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALS--------------------------  187 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALe--------------------------  187 (575)
                                        .++.   ..+++++|.+|..+|++++|+.+|++++.                          
T Consensus        72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  133 (258)
T 3uq3_A           72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY  133 (258)
T ss_dssp             ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence                              0011   34556666666666666666666666666                          


Q ss_pred             hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          188 LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       188 idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++|++.. ++++|.+|..+|++++|+.+|++++...|.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  173 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA  173 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence            7777777 99999999999999999999999999999764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=4.7e-14  Score=138.12  Aligned_cols=175  Identities=11%  Similarity=0.026  Sum_probs=119.7

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHHH
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKLK  127 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L~  127 (575)
                      |.....+...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+..+...++...   ........
T Consensus        34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            333344444555556666666666666666666666666666666666666666666666444332111   00000000


Q ss_pred             --hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048          128 --NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC  196 (575)
Q Consensus       128 --l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~  196 (575)
                        .+. ........+..+...|+        ..++...|++..++.++|.+|..+|++++|+.+|+++++++|++.. ++
T Consensus       114 l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  192 (359)
T 3ieg_A          114 LVKAD-EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY  192 (359)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence              000 00011122344444444        3457779999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          197 NLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       197 NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++|.+|..+|++++|+.+|+++++..|++.
T Consensus       193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  222 (359)
T 3ieg_A          193 KISTLYYQLGDHELSLSEVRECLKLDQDHK  222 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence            999999999999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.63  E-value=1e-14  Score=145.22  Aligned_cols=170  Identities=16%  Similarity=0.114  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC----------------------
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR----------------------  114 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga----------------------  114 (575)
                      +...+..+...+++++|+.+|++++..+|.+..+++.+|.+|..+|++++|+..+...                      
T Consensus       101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 1fch_A          101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG  180 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence            3334444455555555555555555555555555555566666666655555553221                      


Q ss_pred             ----------------HHHHHHHHHHHHHhhHH--HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048          115 ----------------IEEEIELLQNKLKNIEE--GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus       115 ----------------LeeAi~lL~~~L~l~~~--a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a  168 (575)
                                      +++++..+...+...+.  ....+..++.++...|+        ..++.++|++..+++++|.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  260 (368)
T 1fch_A          181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT  260 (368)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence                            22333334444333333  34455667777777666        34577789999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++.+.|++.
T Consensus       261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          261 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999998 99999999999999999999999999988763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=1.9e-14  Score=127.53  Aligned_cols=158  Identities=15%  Similarity=0.053  Sum_probs=121.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++..           +.....+.
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~   80 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-----------PDNVKVAT   80 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCHHHHH
Confidence            3445666788999999999999999999999999999999999999999998865544321           11112223


Q ss_pred             HHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048          138 VKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV  208 (575)
Q Consensus       138 nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~  208 (575)
                      .++..+...|+        ..++.+.|.+..++..+|.+|..+|++++|+.+|++++++.|++.. +.++|.+|..+|++
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  160 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH  160 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence            33333333333        2346667888888888899999999999999999999998888888 88889999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 038048          209 TEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       209 eEAi~lLekALel~P~n~  226 (575)
                      ++|+.+++++++..|++.
T Consensus       161 ~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          161 EEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCCch
Confidence            999999999888888654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=4.2e-14  Score=133.88  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++...           .....+
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~  108 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-----------RNARVL  108 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHH
Confidence            344556678889999999999999999999999999999999999999999998665544311           112233


Q ss_pred             hHHHHHHHHhch--------hhHHh--hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          137 GVKTKMARSQGK--------KIQIT--VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       137 ~nla~al~sqg~--------k~aL~--L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                      ..++.++...|+        ..++.  ..|....+++++|.+|..+|++++|+.+|++++++.|++.. +++||.+|..+
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            344444444444        22344  56788889999999999999999999999999999999998 99999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCCC
Q 038048          206 NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       206 Gr~eEAi~lLekALel~P~n~  226 (575)
                      |++++|+.+|+++++..|.+.
T Consensus       189 g~~~~A~~~~~~~~~~~~~~~  209 (252)
T 2ho1_A          189 REYVPARQYYDLFAQGGGQNA  209 (252)
T ss_dssp             TCHHHHHHHHHHHHTTSCCCH
T ss_pred             CCHHHHHHHHHHHHHhCcCcH
Confidence            999999999999999888654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.62  E-value=1.1e-13  Score=135.61  Aligned_cols=180  Identities=13%  Similarity=0.043  Sum_probs=123.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------------hcCHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR-----------------------SGRIEEE  118 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~-----------------------~gaLeeA  118 (575)
                      ......+++++|+.+|.+++..+|....++..+|.+|...|++++|+..+                       .+.++++
T Consensus       128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            44566677777777777777777777777777777777777777777662                       3333444


Q ss_pred             HHHHHHHHHhhHHHHHH------------HhHHHHHHHHhch--------hhHHhhcCCcHH----HHHHHHHHHHHcCC
Q 038048          119 IELLQNKLKNIEEGIAF------------AGVKTKMARSQGK--------KIQITVEQEKSR----ILGNLAWAYMQQNN  174 (575)
Q Consensus       119 i~lL~~~L~l~~~a~a~------------~~nla~al~sqg~--------k~aL~L~Pd~~~----a~~nLG~aY~~qGr  174 (575)
                      +..+...+...+.....            ....+..+...|+        ..++.+.|++..    ++..+|.+|..+|+
T Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  287 (359)
T 3ieg_A          208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK  287 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence            44444444322211111            1122444444444        335666777663    56778999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048          175 FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE  244 (575)
Q Consensus       175 yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e  244 (575)
                      +++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.   .....+.++...+.+
T Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ---QIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHH
Confidence            99999999999999999988 88999999999999999999999999988754   233455555555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.62  E-value=5.8e-14  Score=136.37  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH---------------
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI---------------  115 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL---------------  115 (575)
                      |.....+...+..+...+++++|+.+|++++..+|....++..+|.+|...|++++|+..+...+               
T Consensus        52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  131 (327)
T 3cv0_A           52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ  131 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence            33333444455566667777777777777777777777777777777777777777777643322               


Q ss_pred             -----------------------HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHH
Q 038048          116 -----------------------EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGN  164 (575)
Q Consensus       116 -----------------------eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~n  164 (575)
                                             ++++..+...+...+.....+..++.++...|+        ..++.++|++..++.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  211 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK  211 (327)
T ss_dssp             --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                                   222233333332222222333444444444444        2234445555556666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+.+|++++...|+
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            666666666666666666666666666555 556666666666666666666666665554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.61  E-value=1e-13  Score=139.26  Aligned_cols=162  Identities=16%  Similarity=0.099  Sum_probs=126.1

Q ss_pred             HHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHH------------------HhcCHHHHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINA--GDRVDSALKDMAVVMKQLDRSDEAIEA------------------RSGRIEEEIELLQN  124 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l--~p~~~~Al~nLA~iy~qqGrydEAie~------------------~~gaLeeAi~lL~~  124 (575)
                      ...++.++|+..|++.+..  +|++..+++.+|.+|...|++++|+.+                  ..+.+++++..+..
T Consensus        76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3456789999999998876  588888999999999999999999987                  34556666666666


Q ss_pred             HHHhhHHHHHH--HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          125 KLKNIEEGIAF--AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       125 ~L~l~~~a~a~--~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      .+...+.....  ...+...+...|+        ..++...|++..+++++|.+|..+|++++|+.+|++||+++|+++.
T Consensus       156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            66433222111  0011111112222        3457779999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHHcCCHHH-HHHHHHHHHHHcCCCC
Q 038048          195 -QCNLAICLMHMNRVTE-AKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 -~~NLA~iy~~qGr~eE-Ai~lLekALel~P~n~  226 (575)
                       ++|||.++..+|++++ |..+++++++++|+++
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence             9999999999999987 5789999999999876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.60  E-value=9.7e-15  Score=132.78  Aligned_cols=141  Identities=16%  Similarity=0.107  Sum_probs=119.6

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      ..+++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.++..                                
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~--------------------------------   69 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ--------------------------------   69 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------------
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Confidence            457889999999999999999999999999999999999999998543                                


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          146 QGKKIQITVEQEKSRILGNLAWA-YMQQNNF--EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~a-Y~~qGry--eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                           ++.++|++..+++++|.+ |...|++  ++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++
T Consensus        70 -----al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           70 -----ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             -----HHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----HHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence                 245678889999999999 8899999  9999999999999999999 999999999999999999999999999


Q ss_pred             cCCCCCChhHHHHHHHHHHHHH
Q 038048          222 AGNRQMDTSYSRSFERAIQMLT  243 (575)
Q Consensus       222 ~P~n~~~~~~l~slerA~elL~  243 (575)
                      +|++.........+.++.++..
T Consensus       145 ~p~~~~~~~~~~~i~~~~~~~~  166 (177)
T 2e2e_A          145 NSPRINRTQLVESINMAKLLQR  166 (177)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHhcC
Confidence            9987632233445555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=2e-13  Score=125.38  Aligned_cols=159  Identities=13%  Similarity=0.072  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++..           +.....+
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~   79 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-----------PDSAEIN   79 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------CCChHHH
Confidence            44556677889999999999999999999999999999999999999999999866554321           1112233


Q ss_pred             hHHHHHHHHh-ch--------hhHHh--hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          137 GVKTKMARSQ-GK--------KIQIT--VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       137 ~nla~al~sq-g~--------k~aL~--L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                      ..++..+... |+        ..++.  ..|....+++++|.+|..+|++++|+.+|++++++.|++.. +.++|.+|..
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  159 (225)
T 2vq2_A           80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML  159 (225)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            4444555555 44        23344  45677889999999999999999999999999999999999 9999999999


Q ss_pred             cCCHHHHHHHHHHHHHHcC-CCC
Q 038048          205 MNRVTEAKSLLQAVKISAG-NRQ  226 (575)
Q Consensus       205 qGr~eEAi~lLekALel~P-~n~  226 (575)
                      +|++++|+.+|++++...| .+.
T Consensus       160 ~~~~~~A~~~~~~~~~~~~~~~~  182 (225)
T 2vq2_A          160 AGQLGDADYYFKKYQSRVEVLQA  182 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHHCSCCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCH
Confidence            9999999999999999998 653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=2.4e-14  Score=136.78  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=79.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------------------
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-------------------------  116 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------------------  116 (575)
                      ..++..+++++|+.+|+++++.+|.+..+++.+|.+|...|++++|+.++...++                         
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~   90 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD   90 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence            4445556666666666666666666555666666666666666666655332221                         


Q ss_pred             -HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048          117 -EEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS  187 (575)
Q Consensus       117 -eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe  187 (575)
                       +++..+...+...+.....+..++.++...|+        ..++.++|.+..+++++|......+++++|+.+|+++++
T Consensus        91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  170 (272)
T 3u4t_A           91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE  170 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111111111111111223333344433333        223444555555555555222333355555555555555


Q ss_pred             hCCCCHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHHc
Q 038048          188 LGVDMNK-QCNLAICLMHMNR---VTEAKSLLQAVKISA  222 (575)
Q Consensus       188 idPdn~~-~~NLA~iy~~qGr---~eEAi~lLekALel~  222 (575)
                      ++|++.. ++++|.++..+|+   +++|+..|+++++..
T Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            5555555 5555555555555   555555555555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.58  E-value=4.5e-14  Score=144.77  Aligned_cols=170  Identities=14%  Similarity=0.079  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------------hc
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR-----------------------SG  113 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~-----------------------~g  113 (575)
                      +...+..+...+++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.++                       .+
T Consensus        29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  108 (450)
T 2y4t_A           29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG  108 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            3334445555666666666666666666666666666666666666666666652                       22


Q ss_pred             CHHHHHHHHHHHHHhhHHHH---HH------------HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHH
Q 038048          114 RIEEEIELLQNKLKNIEEGI---AF------------AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus       114 aLeeAi~lL~~~L~l~~~a~---a~------------~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      .+++++..+...+...+...   ..            ....+..+...|+        ..++.+.|.+..+++++|.+|.
T Consensus       109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  188 (450)
T 2y4t_A          109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI  188 (450)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            33333334443332211111   11            1122333444444        3456778999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..|++++|+.+|+++++++|++.. ++++|.+|...|++++|+.+|++++.+.|++.
T Consensus       189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  245 (450)
T 2y4t_A          189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK  245 (450)
T ss_dssp             HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence            999999999999999999999999 99999999999999999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=1e-13  Score=115.93  Aligned_cols=131  Identities=21%  Similarity=0.222  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|....+++.+|.++...|++++|+.++...                      
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------------------   61 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA----------------------   61 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH----------------------
Confidence            3445566778899999999999999999999999999999999999999999884332                      


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL  215 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lL  215 (575)
                                     +.+.|....+++++|.+|..+|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.+|
T Consensus        62 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           62 ---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             ---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ---------------HHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence                           3446777889999999999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHcCC
Q 038048          216 QAVKISAGN  224 (575)
Q Consensus       216 ekALel~P~  224 (575)
                      ++++..+|+
T Consensus       127 ~~~~~~~~~  135 (136)
T 2fo7_A          127 QKALELDPR  135 (136)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHccCCC
Confidence            999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.58  E-value=2.6e-14  Score=131.26  Aligned_cols=162  Identities=10%  Similarity=0.030  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-HHHHHHHHhhHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-ELLQNKLKNIEEGIA  134 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-~lL~~~L~l~~~a~a  134 (575)
                      .+...+..++..|++++|+..|++++..+|++..+++++|.+|..+|++++|+.++...+.... ..+......+.....
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            3445556778899999999999999999999999999999999999999999999877765421 000000000000000


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--NK-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--~~-~~NLA~iy~~qGr~eEA  211 (575)
                        .....+....  +.++.++|++..+++++|.+|..+|++++|+.+|+++++++|++  .. +.+||.+|..+|+.++|
T Consensus        88 --~~~~~a~~~~--~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           88 --AAESPELKRL--EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             --HTSCHHHHHH--HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             --cccchHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence              0000000000  34678899999999999999999999999999999999999986  44 88999999999999999


Q ss_pred             HHHHHHHHHH
Q 038048          212 KSLLQAVKIS  221 (575)
Q Consensus       212 i~lLekALel  221 (575)
                      +..|+++|..
T Consensus       164 ~~~y~~al~~  173 (176)
T 2r5s_A          164 ASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.58  E-value=3.1e-14  Score=125.77  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...|..++..|++++|+.+|.++|+.+|.+..+++++|.+|..+|++++|+..+..                      
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------------   72 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT----------------------   72 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH----------------------
Confidence            3445677888999999999999999999999999999999999999999999998533                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                                     ++.++|++..+|+++|.+|..+|++++|+.+|+++|+++|++.. +.+|+.++
T Consensus        73 ---------------al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           73 ---------------CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             ---------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             ---------------HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                           35679999999999999999999999999999999999999999 88998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.58  E-value=1.7e-14  Score=164.10  Aligned_cols=133  Identities=17%  Similarity=0.163  Sum_probs=116.1

Q ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh
Q 038048           83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITV  154 (575)
Q Consensus        83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L  154 (575)
                      ..|+++.++++||.+|.++|++++|++++.++++.           .+.....+.+++.++...|+        +.++.+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-----------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35788899999999999999999999997666543           23333456667777777766        457899


Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|++..+|++||.+|..+|++++|+.+|++||+++|++.. ++|||.+|..+|++++|+.+|+++++++|++.
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999999 99999999999999999999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.57  E-value=1.7e-13  Score=146.05  Aligned_cols=186  Identities=14%  Similarity=0.041  Sum_probs=104.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ..+...|++++|+.+|+++++.+|.+..+++.||.+|.+.|++++|+++           +...+...+.....+..++.
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------~~~~~~~~~~~~~~~~~l~~  449 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA-----------YTTAARLFQGTHLPYLFLGM  449 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-----------HHHHHHTTTTCSHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHhCccchHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444           33333222222233444555


Q ss_pred             HHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HH-HHHHHHHHHHc
Q 038048          142 MARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL------GVDM-NK-QCNLAICLMHM  205 (575)
Q Consensus       142 al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei------dPdn-~~-~~NLA~iy~~q  205 (575)
                      ++...|+        ..++.+.|.+..+++.+|.+|...|++++|+.+|++++++      +|++ .. +.+||.+|...
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            5554444        2345667777778888888888888888888888888877      5654 44 77788888888


Q ss_pred             CCHHHHHHHHHHHHHHcCCCCCChh----HHHHHHHHHHHHHHhccccccCcccccc
Q 038048          206 NRVTEAKSLLQAVKISAGNRQMDTS----YSRSFERAIQMLTELESPSVLKLTELEV  258 (575)
Q Consensus       206 Gr~eEAi~lLekALel~P~n~~~~~----~l~slerA~elL~ele~al~~~p~~~e~  258 (575)
                      |++++|+.+|+++++..|++.....    .....++..+++..++..+.+.|.....
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            8888888888888887776542110    1112233344444445555555655533

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.57  E-value=2.8e-13  Score=138.83  Aligned_cols=166  Identities=11%  Similarity=0.000  Sum_probs=111.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc-----------------------CHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG-----------------------RIEE  117 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g-----------------------aLee  117 (575)
                      +..+...+++++|+.+|++++...|....+++.+|.+|...|++++|+.++..                       .+++
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            34456677888888888888888888888888888888888888888877333                       3333


Q ss_pred             HHHHHHHHHHhhHHHHHHH------------hHHHHHHHHhch--------hhHHhhcCCcH----HHHHHHHHHHHHcC
Q 038048          118 EIELLQNKLKNIEEGIAFA------------GVKTKMARSQGK--------KIQITVEQEKS----RILGNLAWAYMQQN  173 (575)
Q Consensus       118 Ai~lL~~~L~l~~~a~a~~------------~nla~al~sqg~--------k~aL~L~Pd~~----~a~~nLG~aY~~qG  173 (575)
                      ++..+...+...+.....+            ..++.++...|+        ..++.+.|++.    .++.++|.+|..+|
T Consensus       230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g  309 (450)
T 2y4t_A          230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE  309 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCC
Confidence            3333333332221111111            112444444444        23456667663    36777888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          174 NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       174 ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus       310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  363 (450)
T 2y4t_A          310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ  363 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence            888888888888888888877 78888888888888888888888888777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.56  E-value=1.2e-13  Score=134.21  Aligned_cols=170  Identities=16%  Similarity=0.118  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--------------------
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE--------------------  116 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe--------------------  116 (575)
                      +...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++                    
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence            445556778899999999999999999999999999999999999999999998444333                    


Q ss_pred             ---HHHHHHHHHHHhhHHHHHHHhHH--------------HH-HHHHhch--------hhHHhhcCCcHHHHHHHHHHHH
Q 038048          117 ---EEIELLQNKLKNIEEGIAFAGVK--------------TK-MARSQGK--------KIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus       117 ---eAi~lL~~~L~l~~~a~a~~~nl--------------a~-al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                         +++..+...+...+.....+..+              +. ++...|+        ..++.+.|.+..++..+|.+|.
T Consensus       104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  183 (327)
T 3cv0_A          104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN  183 (327)
T ss_dssp             CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence               33333333332111100000000              11 1111111        3456778999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+.+|+++++..|++.
T Consensus       184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  240 (327)
T 3cv0_A          184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV  240 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999 99999999999999999999999999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.56  E-value=8e-14  Score=139.15  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=125.9

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.....+...+..++..|++++|+..|++++..+|++..++++||.+|.++|++++|+.++...+..........+   
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~---  189 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL---  189 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH---
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH---
Confidence            35545556667777889999999999999999999999999999999999999999999998776553221110000   


Q ss_pred             HHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH-HHHH
Q 038048          130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--NK-QCNL  198 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--~~-~~NL  198 (575)
                              .....+...+.        +.++.++|++..++++||.+|..+|++++|+..|+++++++|++  .. +.+|
T Consensus       190 --------~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          190 --------VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             --------HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             --------HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                    00000101010        24577899999999999999999999999999999999999988  56 8899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q 038048          199 AICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       199 A~iy~~qGr~eEAi~lLekALel  221 (575)
                      |.+|..+|+.++|+..|++++..
T Consensus       262 ~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          262 QEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999999999988763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=5.5e-14  Score=148.16  Aligned_cols=202  Identities=8%  Similarity=-0.034  Sum_probs=152.5

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048           48 HKVPSGDSPYVRAKHIQLIDKD-PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL  126 (575)
Q Consensus        48 ~~~ps~d~~yarA~~l~l~~kd-~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L  126 (575)
                      ...|.....+...+.++...++ +++|+.+|+++|.++|++..+++++|.+|..+|++++|+..+.++++          
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~----------  194 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN----------  194 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH----------
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------
Confidence            3445555556666677777785 99999999999999999999999999999999999999998666544          


Q ss_pred             HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCC
Q 038048          127 KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ-QNNFEMA-----EQYYRKALSLGVDM  192 (575)
Q Consensus       127 ~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~-qGryeEA-----e~~yrkALeidPdn  192 (575)
                       +.+.....+.+++.++...|+        ..++.++|++..+|+++|.+|.. .|.+++|     +.+|++||+++|++
T Consensus       195 -ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~  273 (382)
T 2h6f_A          195 -QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN  273 (382)
T ss_dssp             -HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             -hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence             333334455666666666665        46789999999999999999999 5665888     59999999999999


Q ss_pred             HH-HHHHHHHHHHcC--CHHHHHHHHHHHHHHcCCCCCCh-----hHHHHH-------H-HHHHHHHHhccc-cccCccc
Q 038048          193 NK-QCNLAICLMHMN--RVTEAKSLLQAVKISAGNRQMDT-----SYSRSF-------E-RAIQMLTELESP-SVLKLTE  255 (575)
Q Consensus       193 ~~-~~NLA~iy~~qG--r~eEAi~lLekALel~P~n~~~~-----~~l~sl-------e-rA~elL~ele~a-l~~~p~~  255 (575)
                      .. +++||.+|..+|  ++++|+..++++ +.+|++....     .+....       + ...+++..++.+ ..++|..
T Consensus       274 ~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r  352 (382)
T 2h6f_A          274 ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR  352 (382)
T ss_dssp             HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence            99 999999999999  799999999987 7666653211     111110       1 124444445555 5667776


Q ss_pred             ccccch
Q 038048          256 LEVGDD  261 (575)
Q Consensus       256 ~e~~~~  261 (575)
                      ...|..
T Consensus       353 ~~~w~~  358 (382)
T 2h6f_A          353 KEYWRY  358 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666555

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.54  E-value=2.9e-13  Score=144.22  Aligned_cols=170  Identities=8%  Similarity=-0.050  Sum_probs=132.1

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-----------------------
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA-----------------------  110 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~-----------------------  110 (575)
                      ...+...+..+...|++++|+.+|++++..+|.+..++..++.+|.+.|++++|+.+                       
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            334444556667778888888888888887777767777777777777777777766                       


Q ss_pred             HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038048          111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYY  182 (575)
Q Consensus       111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~y  182 (575)
                      ..+.+++++..+...+...+.....+..++..+...|+        +.++.+.|++..+++.+|.+|...|++++|+.+|
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL  464 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            23444455555555554333444456666777766666        3456778999999999999999999999999999


Q ss_pred             HHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          183 RKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       183 rkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      ++++++.|++.. +.++|.+|...|++++|+.+|+++++..|
T Consensus       465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  506 (597)
T 2xpi_A          465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK  506 (597)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            999999999999 99999999999999999999999999854

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.53  E-value=1.2e-13  Score=128.04  Aligned_cols=130  Identities=15%  Similarity=0.085  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++  ++ ...+++++|.+|..+|++++|+.++..                       
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~-----------------------   62 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTR-----------------------   62 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence            4455667788999999999999996  33 578999999999999999999998543                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------H-HHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------------K-QCNLA  199 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------------~-~~NLA  199 (575)
                                    ++.++|++..+++++|.+|..+|++++|+.+|++++++.|++.                . ++++|
T Consensus        63 --------------al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (213)
T 1hh8_A           63 --------------SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA  128 (213)
T ss_dssp             --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred             --------------HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH
Confidence                          2456888999999999999999999999999999999998876                7 89999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          200 ICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       200 ~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|..+|++++|+.+|++++++.|++.
T Consensus       129 ~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          129 FMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            999999999999999999999998653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=2.5e-13  Score=122.70  Aligned_cols=124  Identities=18%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      +....+++.+|.+|...|+|++|+.++..                                     ++.++|++..++++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~   50 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQ-------------------------------------ALSIAPANPIYLSN   50 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCcCHHHHHH
Confidence            33466889999999999999999998544                                     35668999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT  243 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~  243 (575)
                      +|.+|..+|+|++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.. ......+..+...+.
T Consensus        51 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~  129 (164)
T 3sz7_A           51 RAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIE  129 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 999999999999999999999999999998762 223344555555555


Q ss_pred             Hhc
Q 038048          244 ELE  246 (575)
Q Consensus       244 ele  246 (575)
                      +..
T Consensus       130 ~~~  132 (164)
T 3sz7_A          130 EAN  132 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.52  E-value=3.2e-13  Score=141.34  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR  111 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~  111 (575)
                      ..|.....+...+..+...+++++|+..|++++..+|++..+++.+|.+|..+|++++|+..+
T Consensus        54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  116 (537)
T 3fp2_A           54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL  116 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            444555566667777888899999999999999999999999999999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=6.7e-13  Score=126.25  Aligned_cols=159  Identities=11%  Similarity=-0.030  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..+...+++++|+.+|++++..+|.+..+++++|.+|...|++++|+.++..+++..           +.....
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~  113 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----------PTYNYA  113 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCTHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------ccccHH
Confidence            344566777889999999999999999999999999999999999999999999865544321           111122


Q ss_pred             HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Q 038048          136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM---------------  192 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn---------------  192 (575)
                      +..++.++...|+        ..++.+.|++...+..++.. ..+|++++|+.+|++++...|++               
T Consensus       114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (275)
T 1xnf_A          114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS  192 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC
Confidence            3333444444433        23455666666544444433 44566666666666666655543               


Q ss_pred             ----------------------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          193 ----------------------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       193 ----------------------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                                            .. +++||.+|..+|++++|+.+|++++.++|++.
T Consensus       193 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence                                  23 56777777778888888888888777777654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=2.1e-13  Score=124.08  Aligned_cols=159  Identities=10%  Similarity=-0.032  Sum_probs=124.0

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCc
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEK  158 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~  158 (575)
                      ...+|++||.+|..+|++++|+.++..+++.           .+.....+..++.++...|+        ..++...|+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            4678999999999999999999997766543           22333444555556655555        3457779999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHH
Q 038048          159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSR  233 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~  233 (575)
                      ..++.++|.++...+++++|+..+.+++.++|++.. +..+|.+|..+|++++|+.+|+++++++|.+....    ....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999 99999999999999999999999999999875311    1112


Q ss_pred             HHHHHHHHHHHhccccccCcccc
Q 038048          234 SFERAIQMLTELESPSVLKLTEL  256 (575)
Q Consensus       234 slerA~elL~ele~al~~~p~~~  256 (575)
                      ..++..+++..++.++.++|..+
T Consensus       153 ~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhCCccCH
Confidence            23445555556666666666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.51  E-value=1.5e-13  Score=136.90  Aligned_cols=166  Identities=13%  Similarity=0.079  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDR------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.+++.++...+++++|+..|.+++.+.+.      ...++.++|.+|..+|++++|+.++..+++.....     ...
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----g~~  113 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-----GQF  113 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----CCH
Confidence            3566777888899999999999999987421      25689999999999999999999977665543211     011


Q ss_pred             HHHHHHHhHHHHHHHHh-ch--------hhHHhhcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          130 EEGIAFAGVKTKMARSQ-GK--------KIQITVEQEK------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       130 ~~a~a~~~nla~al~sq-g~--------k~aL~L~Pd~------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      ......+.+++.++... |+        ..++.+.|..      ..++.++|.+|..+|+|++|+.+|++++++.|++..
T Consensus       114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            11123344555555553 44        2344554432      346778888888888888888888888888776532


Q ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          195 --------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 --------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                              ++++|.+|..+|++++|+.+|+++++++|+..
T Consensus       194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                    46778888888888888888888888777644

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=5.2e-13  Score=117.70  Aligned_cols=129  Identities=10%  Similarity=0.032  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..++..+++++|+.+|.+++..+|....+++++|.+|...|++++|+.++..                       
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-----------------------   72 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR-----------------------   72 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence            444556677889999999999999999999999999999999999999999988433                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH--HHHHHHHHcCCHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC--NLAICLMHMNRVTEAKS  213 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~--NLA~iy~~qGr~eEAi~  213 (575)
                                    ++.++|.+..+++++|.+|..+|++++|+.+|+++++++|++.. +.  .++.++..+|++++|+.
T Consensus        73 --------------a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A           73 --------------AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          24557888889999999999999999999999999999999988 64  45555889999999999


Q ss_pred             HHHHHHHHc
Q 038048          214 LLQAVKISA  222 (575)
Q Consensus       214 lLekALel~  222 (575)
                      +++++..+.
T Consensus       139 ~~~~~~~~~  147 (166)
T 1a17_A          139 GDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             cccchHHHh
Confidence            999887754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.51  E-value=2.1e-13  Score=117.44  Aligned_cols=100  Identities=16%  Similarity=0.059  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA  166 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG  166 (575)
                      .+..++.+|.++...|++++|+.++..                                     ++.++|++..+++++|
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~~a   45 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTE-------------------------------------MIKRAPEDARGYSNRA   45 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------------------------HHHhCCCChHHHHHHH
Confidence            456788999999999999999998544                                     3566899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          167 WAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       167 ~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      .+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+..|+++++++|
T Consensus        46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999 99999999999999999999999999993

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.50  E-value=1.1e-12  Score=135.86  Aligned_cols=171  Identities=12%  Similarity=0.004  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC------------
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINA---------GDRVDSALKDMAVVMKQLDRSDEAIEARSGR------------  114 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l---------~p~~~~Al~nLA~iy~qqGrydEAie~~~ga------------  114 (575)
                      .|...+.++...|++++|+.+|++|+++         ++....++.+||.+|..+|++++|+.++.++            
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            4555677888899999999999999875         5667788999999999999999999874333            


Q ss_pred             ---------------------HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH---hch--------hhHHhhcCCcHHHH
Q 038048          115 ---------------------IEEEIELLQNKLKNIEEGIAFAGVKTKMARS---QGK--------KIQITVEQEKSRIL  162 (575)
Q Consensus       115 ---------------------LeeAi~lL~~~L~l~~~a~a~~~nla~al~s---qg~--------k~aL~L~Pd~~~a~  162 (575)
                                           +++|+..+.+.+...+....++..++.++..   .++        +.++.++|++..++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~  212 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK  212 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence                                 3445555555554444433444444444332   222        45788899999999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          163 GNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       163 ~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++|..+..    .|++++|+.+|++++.++|++.. +.+||.+|..+|++++|+.+|+++++.+|++.
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence            999876655    46788999999999999999999 99999999999999999999999999999764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=2.7e-13  Score=146.84  Aligned_cols=139  Identities=14%  Similarity=0.022  Sum_probs=119.9

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      |.....+...+..+...+++++|+.+|+++++.+|++..++++||.+|..+|++++|+.++..                 
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-----------------   82 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ-----------------   82 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------
Confidence            333445555667777788888888888888888888888888888888888888888887433                 


Q ss_pred             HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc---C
Q 038048          131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM---N  206 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q---G  206 (575)
                                          ++.++|++..++++||.+|..+|++++|+.+|+++++++|++.. +.+||.+|..+   |
T Consensus        83 --------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g  142 (568)
T 2vsy_A           83 --------------------ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR  142 (568)
T ss_dssp             --------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred             --------------------HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence                                35668999999999999999999999999999999999999999 99999999999   9


Q ss_pred             CHHHHHHHHHHHHHHcCCCC
Q 038048          207 RVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n~  226 (575)
                      ++++|+..|+++++.+|.+.
T Consensus       143 ~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             THHHHHHHHHHHHHHTCCCS
T ss_pred             cHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.1e-12  Score=126.49  Aligned_cols=163  Identities=20%  Similarity=0.254  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      +...+..+...+++++|+.+|++++..        .+....++..+|.+|...|++++|+.++..+++.....++.   .
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~  106 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK---D  106 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT---T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC---C
Confidence            444556778899999999999999984        55567789999999999999999999976665543222100   0


Q ss_pred             hHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 038048          129 IEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL----  188 (575)
Q Consensus       129 ~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei----  188 (575)
                      .+.....+.+++.++...|+        ..++.+        .|....+++++|.+|..+|++++|+.+|++++++    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            11112334444555544444        122332        2555668999999999999999999999999998    


Q ss_pred             ----CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          189 ----GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       189 ----dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                          .|.... +.+||.+|..+|++++|+.+|+++++..
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                565666 8899999999999999999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.49  E-value=1.3e-13  Score=154.76  Aligned_cols=150  Identities=11%  Similarity=-0.043  Sum_probs=127.4

Q ss_pred             HHcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAI--------NAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL--------~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +..+++++|+..|++++        +.+|++..+++.+|.+|.++|++++|+..+..+++..           +.....+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~  470 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----------GWRWRLV  470 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------CCCHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------cchHHHH
Confidence            56789999999999999        8999999999999999999999999999976655432           2222334


Q ss_pred             hHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          137 GVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       137 ~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                      .+++.++...|+        +.++.++|++..++++||.+|..+|++++ +.+|++|++++|++.. +++||.+|..+|+
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~  549 (681)
T 2pzi_A          471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD  549 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC
Confidence            444455554444        45788899999999999999999999999 9999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCC
Q 038048          208 VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       208 ~eEAi~lLekALel~P~n~  226 (575)
                      +++|+..|+++++++|++.
T Consensus       550 ~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          550 RVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHHHHHhhcccCcccH
Confidence            9999999999999998754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.48  E-value=6.3e-13  Score=139.11  Aligned_cols=158  Identities=12%  Similarity=0.041  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|. ..+++.+|.+|...|++++|+.++...++..           +.....+
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~  313 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-----------PEYPPTY  313 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-----------TTCHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-----------CCCHHHH
Confidence            445556677889999999999999999999 8899999999999999999999866554422           1122334


Q ss_pred             hHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          137 GVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       137 ~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                      ..++.++...|+        ..++.++|++..++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|+
T Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD  393 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            444455554444        3467789999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCC
Q 038048          208 VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       208 ~eEAi~lLekALel~P~n~  226 (575)
                      +++|+.+|+++++..|++.
T Consensus       394 ~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          394 FDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHcCCcch
Confidence            9999999999999988654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.48  E-value=3e-13  Score=122.28  Aligned_cols=115  Identities=12%  Similarity=0.054  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+.++...+++++|+.+|+++|+++|++..++++||.+|..+|++++|+..+..                      
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~----------------------   90 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR----------------------   90 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH----------------------
Confidence            3445667788899999999999999999999999999999999999999999998544                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY-YRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~-yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                                     ++.++|++..++++||.+|..+|++++|+.. +++|++++|+++. +..++.++..+|+
T Consensus        91 ---------------al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           91 ---------------SVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             ---------------HHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             ---------------HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence                           3567999999999999999999999987765 5999999999999 7788999988885

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=4.2e-13  Score=118.27  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      +.++.+||.+|.++|+|++|+.++..                                     ++.++|++..+++++|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~-------------------------------------Al~~~p~~~~~~~nlg~   50 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDK-------------------------------------AIELDPSNITFYNNKAA   50 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCCHHHHHhHHH
Confidence            45788999999999999999998644                                     35679999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH-------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMN-------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~-------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +|..+|+|++|+.+|++||+++|++.       . ++++|.+|..+|++++|+.+|+++|...|+
T Consensus        51 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           51 VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            99999999999999999999998764       3 678999999999999999999999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.1e-12  Score=135.89  Aligned_cols=61  Identities=15%  Similarity=0.022  Sum_probs=52.6

Q ss_pred             CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048           53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG  113 (575)
Q Consensus        53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g  113 (575)
                      ....+...+..++..+++++|+..|+++++.+|.+..+++.+|.+|..+|++++|+..+..
T Consensus        38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (514)
T 2gw1_A           38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV   98 (514)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3445566677778889999999999999999999999999999999999999999987544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.47  E-value=4.5e-13  Score=138.76  Aligned_cols=65  Identities=22%  Similarity=0.133  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          161 ILGNLAWAYMQ---QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       161 a~~nLG~aY~~---qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +++++|.+|..   +|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|++
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            66667777766   67777777777777777776666 6667777777777777777777777766653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=1.1e-12  Score=125.11  Aligned_cols=170  Identities=10%  Similarity=-0.052  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH---------HHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE---------LLQN  124 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~---------lL~~  124 (575)
                      +...+..++..|++++|+..|++++...|..   ..+++.+|.+|..+|++++|+..+...++....         .++.
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~   86 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL   86 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence            4445567788999999999999999988875   468999999999999999999997665543211         0000


Q ss_pred             HHHhhH-HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHH-----------------HHHHHHHHHcCCHHHH
Q 038048          125 KLKNIE-EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRIL-----------------GNLAWAYMQQNNFEMA  178 (575)
Q Consensus       125 ~L~l~~-~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~-----------------~nLG~aY~~qGryeEA  178 (575)
                      ...... .....+..++..+...|+        +..+...|+...+.                 ..+|.+|..+|++++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A  166 (225)
T 2yhc_A           87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV  166 (225)
T ss_dssp             HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            000000 000000000111111111        23455566655332                 6788999999999999


Q ss_pred             HHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          179 EQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       179 e~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +..|+++++..|+++   . ++.+|.+|..+|++++|+..+++++...|++.
T Consensus       167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            999999999999886   3 88899999999999999999999888888765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=3.4e-13  Score=128.33  Aligned_cols=123  Identities=18%  Similarity=0.141  Sum_probs=109.7

Q ss_pred             cCChHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAG----DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~----p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      .+++++|+.+|.++++..    |....+++.+|.+|...|++++|+.++..                             
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------   68 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ-----------------------------   68 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHH-----------------------------
Confidence            357899999999999974    44567899999999999999999998543                             


Q ss_pred             HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                              ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++
T Consensus        69 --------al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A           69 --------ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             --------HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                    24568888999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             cCCCC
Q 038048          222 AGNRQ  226 (575)
Q Consensus       222 ~P~n~  226 (575)
                      .|++.
T Consensus       141 ~~~~~  145 (275)
T 1xnf_A          141 DPNDP  145 (275)
T ss_dssp             CTTCH
T ss_pred             CCCCh
Confidence            98764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.47  E-value=6.9e-13  Score=126.59  Aligned_cols=159  Identities=11%  Similarity=-0.016  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      |...+.++...+++++|+.+|++++..+|....++.++|.+|..+|++++|+.++..+++.           .+.....+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~  145 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----------TTTDPKVF  145 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----------SCCCHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----------CCCcHHHH
Confidence            4455556666677777777777777777776667777777777777777777765554432           11111222


Q ss_pred             hHHH-HHHHHhch-------hhHHhhcCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HH-HH
Q 038048          137 GVKT-KMARSQGK-------KIQITVEQEKSRILGNLAWAYMQQNN---FEMAEQYYRKALSLG---VDM-----NK-QC  196 (575)
Q Consensus       137 ~nla-~al~sqg~-------k~aL~L~Pd~~~a~~nLG~aY~~qGr---yeEAe~~yrkALeid---Pdn-----~~-~~  196 (575)
                      .+++ ..+....-       ..++.++|++..+++++|.++..+|+   +++|+.+|++++++.   |+.     .. +.
T Consensus       146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  225 (272)
T 3u4t_A          146 YELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE  225 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            2333 22211100       34678899999999999999999999   999999999999987   653     24 78


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          197 NLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       197 NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +||.+|..+|++++|+.+|+++++++|++.
T Consensus       226 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  255 (272)
T 3u4t_A          226 YIAYYYTINRDKVKADAAWKNILALDPTNK  255 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence            899999999999999999999999999865

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.46  E-value=8.4e-13  Score=135.23  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      .+...+..++..+++++|+.+|++++.++|..               ..++++||.+|..+|++++|+.++..       
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-------  221 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK-------  221 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------
Confidence            34456677788999999999999999999998               58999999999999999999998544       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+||
T Consensus       222 ------------------------------al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          222 ------------------------------ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             ------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             ------------------------------HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence                                          35678999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHH-HHHHHHHHHH
Q 038048          200 ICLMHMNRVTEA-KSLLQAVKIS  221 (575)
Q Consensus       200 ~iy~~qGr~eEA-i~lLekALel  221 (575)
                      .++..+|++++| ..+|++++..
T Consensus       272 ~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          272 VCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 5677777764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.45  E-value=2.3e-12  Score=121.83  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK  127 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~  127 (575)
                      .+...+.++...+++++|+.+|.+++..        .+....++++||.+|..+|++++|+.++..+++......+..  
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--  122 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--  122 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--
Confidence            3445667778899999999999999987        344567899999999999999999999766554322211100  


Q ss_pred             hhHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048          128 NIEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL  188 (575)
Q Consensus       128 l~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei  188 (575)
                       .+.....+.+++.++...|+        ..++.+        .|....++.++|.+|..+|++++|+.+|++++++
T Consensus       123 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          123 -HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             01111223333333333333        112222        3334445566666666666666666666666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.45  E-value=2.6e-12  Score=110.78  Aligned_cols=106  Identities=23%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH
Q 038048           83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL  162 (575)
Q Consensus        83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~  162 (575)
                      .++....+++.+|.++...|++++|+.++..                                     ++.++|++..++
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~   46 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGR-------------------------------------AITRNPLVAVYY   46 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHH-------------------------------------HHhhCcCcHHHH
Confidence            4566788999999999999999999998543                                     245689999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++.+.|++
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence            99999999999999999999999999999999 9999999999999999999999999999873

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=1.3e-12  Score=123.04  Aligned_cols=130  Identities=11%  Similarity=-0.059  Sum_probs=107.5

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcC
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQ  156 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~P  156 (575)
                      +.++.+++++|.+|...|++++|+..+..+++....          .....+.+++.++...|+        ..++.++|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence            345678999999999999999999997665543210          112233335555555555        45688899


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ++..+++++|.+|..+|++++|+.+|+++++++|++.       . ++++|.++..+|++++|+.+|+++++++|+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999998       6 889999999999999999999999999987

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.43  E-value=1.2e-13  Score=141.61  Aligned_cols=137  Identities=15%  Similarity=0.031  Sum_probs=110.5

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +++++|+.+|++++..+|....+++++|.+|..+|+|++|+.++..+++......     ..                 .
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~-----------------~  184 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-----SF-----------------S  184 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-----CC-----------------C
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-----cC-----------------C
Confidence            4567788888888888888889999999999999999999998655433211000     00                 0


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ......+.+....++++||.+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus       185 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            00011222333679999999999999999999999999999999999 99999999999999999999999999999865

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.43  E-value=1.4e-12  Score=123.04  Aligned_cols=114  Identities=19%  Similarity=0.028  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      ..+.++|+++.+.|+|++|+..|.++++.......        .                 ..+...|.+..+|+|+|.+
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~--------~-----------------~a~~~~~~~a~a~~n~g~a   66 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP--------E-----------------EAFDHAGFDAFCHAGLAEA   66 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT--------T-----------------SCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc--------h-----------------hhhhhccchHHHHHHHHHH
Confidence            45778999999999999999997665432111000        0                 0001112234499999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh-------CCCCHH-H----HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSL-------GVDMNK-Q----CNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALei-------dPdn~~-~----~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      +..+|+|++|+.+|.+||++       +|++.. +    +|+|.+|..+|+++||+..|++++++.|++.+
T Consensus        67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            99999999999999999999       999999 9    99999999999999999999999999998875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.42  E-value=2.4e-12  Score=116.03  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ...+..+|..+.+.|+|++|+..|..++..........   .+.                ......++|....+++++|.
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~nla~   71 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE---KPG----------------EPEWVELDRKNIPLYANMSQ   71 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS---CTT----------------SHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC---CCC----------------HHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999766544211110000   000                00012336777789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHh
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL  245 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~el  245 (575)
                      +|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|++++.++|++.  ......+..+...+.+.
T Consensus        72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA--SVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 99999999999999999999999999999753  12233444555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=1.1e-12  Score=140.56  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=128.6

Q ss_pred             cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHhcCHHHHH
Q 038048           49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL---------DRSDEAIEARSGRIEEEI  119 (575)
Q Consensus        49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq---------GrydEAie~~~gaLeeAi  119 (575)
                      ..|.....+...+.++...+++++|+.+|+++++++|+ ..++++||.+|..+         |++++|+.++..+++...
T Consensus       132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  210 (474)
T 4abn_A          132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV  210 (474)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence            44444556667778888899999999999999999999 68999999999999         999999998766554322


Q ss_pred             HHHHHHHHhhHHHHHHHhHHHHHHHHh--------ch--------hhHHhhcC---CcHHHHHHHHHHHHHcCCHHHHHH
Q 038048          120 ELLQNKLKNIEEGIAFAGVKTKMARSQ--------GK--------KIQITVEQ---EKSRILGNLAWAYMQQNNFEMAEQ  180 (575)
Q Consensus       120 ~lL~~~L~l~~~a~a~~~nla~al~sq--------g~--------k~aL~L~P---d~~~a~~nLG~aY~~qGryeEAe~  180 (575)
                                 .....+.+++.++...        ++        ..++.++|   ++..+++++|.+|..+|++++|+.
T Consensus       211 -----------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~  279 (474)
T 4abn_A          211 -----------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE  279 (474)
T ss_dssp             -----------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence                       2222333344444333        32        35678899   999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          181 YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       181 ~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                      +|++|++++|++.. +.+++.++..+|++++|+..+.++
T Consensus       280 ~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999 999999999999999999876543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=7.5e-13  Score=115.88  Aligned_cols=100  Identities=17%  Similarity=0.074  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      .++.+|.++.+.|++++|+..+..                                     ++.++|++..++++||.+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~P~~~~a~~~lg~~~   61 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEA-------------------------------------VCQKEPEREEAWRSLGLTQ   61 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHHHHHHHH
Confidence            467899999999999999998533                                     3567999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+|++++|+.+|++|++++|++.. +++||.+|..+|++++|+..|+++++++|++.
T Consensus        62 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           62 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999999 99999999999999999999999999998653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.42  E-value=4.2e-12  Score=106.25  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK  139 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl  139 (575)
                      .+..+...+++++|+.+|.+++...|....+++.+|.+|...|++++|+.++..                          
T Consensus        18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------------   71 (131)
T 2vyi_A           18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER--------------------------   71 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHH--------------------------
Confidence            334445566666666666666666666666666666666666666666655322                          


Q ss_pred             HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048          140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV  208 (575)
Q Consensus       140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~  208 (575)
                                 ++.+.|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.++|.++..+|++
T Consensus        72 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           72 -----------AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             -----------HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence                       12335555566666666666666666666666666666666666 66666666666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=9.3e-13  Score=124.49  Aligned_cols=155  Identities=23%  Similarity=0.271  Sum_probs=113.2

Q ss_pred             HcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           66 IDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        66 ~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ..+++++|+.+|++|+..        .|....++..+|.+|...|++++|+.++..+++.....++.   ..+.....+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~   89 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK---DHPAVAATLN   89 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT---TCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC---cchHHHHHHH
Confidence            456788888888888873        24556789999999999999999999976665543222100   0111123344


Q ss_pred             HHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 038048          138 VKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--------GVDMN  193 (575)
Q Consensus       138 nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--------dPdn~  193 (575)
                      +++.++...|+        ..++.+        +|....++.++|.+|..+|++++|+.+|++++++        .|...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            55555555554        123333        3556679999999999999999999999999998        56666


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          194 K-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       194 ~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                      . +.+||.+|..+|++++|+.+|++++++.+
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            6 88999999999999999999999998744

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.9e-12  Score=109.38  Aligned_cols=111  Identities=14%  Similarity=0.011  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..                       
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-----------------------   63 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK-----------------------   63 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-----------------------
Confidence            445667778899999999999999999999999999999999999999999998533                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG------VDMNK-QCNLAICLMH  204 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid------Pdn~~-~~NLA~iy~~  204 (575)
                                    ++.++|++..+++++|.+|..+|++++|+.+|+++++++      |++.. ...|+.+...
T Consensus        64 --------------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           64 --------------AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             --------------HHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence                          356789999999999999999999999999999999999      88888 7778877654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=1.9e-12  Score=109.58  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +..+...+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..                           
T Consensus        23 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---------------------------   75 (133)
T 2lni_A           23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE---------------------------   75 (133)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHH---------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH---------------------------
Confidence            34445555566666666666665555555556666666666666665554222                           


Q ss_pred             HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                                ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.++..+|
T Consensus        76 ----------a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           76 ----------CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             ----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             ----------HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence                      12334555555566666666666666666666666666665555 555555555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.40  E-value=1.3e-12  Score=146.49  Aligned_cols=159  Identities=11%  Similarity=-0.063  Sum_probs=124.5

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      |.....+...+..++..+++++|+..|+++++.+|++..+++++|.+|..+|++++|++.+..+++..           +
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------P  498 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----------P  498 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------T
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------C
Confidence            55555666777788889999999999999999999999999999999999999999999976655432           2


Q ss_pred             HHHHHHhHHHHHHHHhch-------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          131 EGIAFAGVKTKMARSQGK-------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~-------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                      .....+.+++.++...|+       +.++.++|++..++++||.+|..+|++++|+.+|++|++++|++.. ++++|.+|
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            222344455555555554       3568889999999999999999999999999999999999999999 99999999


Q ss_pred             HHcCCHHHH-HHHHHHHHH
Q 038048          203 MHMNRVTEA-KSLLQAVKI  220 (575)
Q Consensus       203 ~~qGr~eEA-i~lLekALe  220 (575)
                      +..|+.++| ...+++++.
T Consensus       579 ~~~~~~~~~~~~~~~~A~~  597 (681)
T 2pzi_A          579 LSGRSTSEVTEEQIRDAAR  597 (681)
T ss_dssp             C-------CCHHHHHHHHH
T ss_pred             HccCCCCCCCHHHHHHHHH
Confidence            887774444 444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.40  E-value=3.4e-12  Score=115.20  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..++..+++++|+.+|++++.++|.+..+++++|.+|..+|++++|+.++..                       
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------------------   70 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL-----------------------   70 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHH-----------------------
Confidence            445567778899999999999999999999999999999999999999999998533                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM  203 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~  203 (575)
                                    ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++++....
T Consensus        71 --------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           71 --------------ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             --------------HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence                          35678999999999999999999999999999999999999998 777776543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.39  E-value=2.2e-12  Score=118.86  Aligned_cols=101  Identities=6%  Similarity=-0.080  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..+...|++++|+.+|++++.++|.++.++++||.+|..+|+|++|+.++..                      
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~----------------------   95 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV----------------------   95 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH----------------------
Confidence            4556667778899999999999999999999999999999999999999999998544                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                                     ++.++|+++.+++++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        96 ---------------al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           96 ---------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             ---------------HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ---------------HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                           3677999999999999999999999999999999999999876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.38  E-value=6.7e-12  Score=128.00  Aligned_cols=161  Identities=10%  Similarity=0.036  Sum_probs=119.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINA---GDR---VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI  133 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l---~p~---~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~  133 (575)
                      .+......+++++|+.+|++|+.+   .++   ...+++++|.+|..+|++++|+.++..+++.....-.    ......
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~  184 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----YNIRLL  184 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----THHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----chHHHH
Confidence            566778899999999999999986   222   4568999999999999999999997766554322100    001111


Q ss_pred             HHHhHHHHHHHHhch--------hhHHhhcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCH
Q 038048          134 AFAGVKTKMARSQGK--------KIQITVEQ------EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----G-VDMN  193 (575)
Q Consensus       134 a~~~nla~al~sqg~--------k~aL~L~P------d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----d-Pdn~  193 (575)
                      ..+.+++.++...|+        ..++.+.+      ....++++||.+|..+|++++|+.+|++|+++     + |...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            234455555555554        12333322      22348999999999999999999999999994     5 6666


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          194 K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       194 ~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      . +.+||.+|..+|++++|+.++++++.+.+.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            6 899999999999999999999999998653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.38  E-value=1.4e-12  Score=106.81  Aligned_cols=106  Identities=16%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048           84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG  163 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~  163 (575)
                      +|.+..+++.+|.++...|++++|+.++..                                     ++.+.|.+..+++
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------a~~~~~~~~~~~~   44 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEK-------------------------------------AIQLDPEESKYWL   44 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------------------------HHHhCcCCHHHHH
Confidence            566777889999999999999999998533                                     2456888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCCC
Q 038048          164 NLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMHM-NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       164 nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~q-Gr~eEAi~lLekALel~P~n~  226 (575)
                      ++|.+|..+|++++|+.+|+++++++|+  +.. ++++|.+|..+ |++++|+.++++++...|.+.
T Consensus        45 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           45 MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999999999999999999999999  988 99999999999 999999999999999988653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.37  E-value=4.5e-12  Score=117.88  Aligned_cols=127  Identities=14%  Similarity=0.128  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----------------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----------------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----------------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      +...+..++..+++++|+.+|.+++...|...                .+++++|.+|..+|++++|+.++..       
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------  113 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK-------  113 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------
Confidence            44556677888999999999999999888765                6788888888888888888877433       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+|+
T Consensus       114 ------------------------------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A          114 ------------------------------VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             ------------------------------HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             ------------------------------HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence                                          24457777888888888888888888888888888888888888 88888


Q ss_pred             HHHHHcCCHHHHH-HHHHHHHH
Q 038048          200 ICLMHMNRVTEAK-SLLQAVKI  220 (575)
Q Consensus       200 ~iy~~qGr~eEAi-~lLekALe  220 (575)
                      .++..+++..++. ..|.+++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          164 LCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888888777 44444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.37  E-value=7.5e-12  Score=125.41  Aligned_cols=164  Identities=15%  Similarity=0.143  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.+++.++...+++++|+..|.+++.+.+..      ..++.++|.+|..+|++++|+.++..+++.....     ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----g~~  112 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-----GTP  112 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-----TCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-----CCH
Confidence            35566777888899999999999999875422      4578999999999999999999977766543210     000


Q ss_pred             HHHHHHHhHHHHHHHHhch--------hhHHhhcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 038048          130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEK------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN--  193 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~--  193 (575)
                      ......+.+++.++.. |+        +.++.+.+..      ..+++++|.+|..+|+|++|+.+|++++++.|++.  
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  191 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY  191 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            1111233444444444 33        2334443321      46899999999999999999999999999976542  


Q ss_pred             ----H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          194 ----K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       194 ----~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                          . ++++|.++..+|++++|+.+|++++ ++|...
T Consensus       192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence                2 6789999999999999999999999 888755

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=2.7e-11  Score=111.01  Aligned_cols=132  Identities=13%  Similarity=0.141  Sum_probs=106.0

Q ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc
Q 038048           84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE  155 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~  155 (575)
                      .|....+++.+|.+|...|++++|+.++...++...           .....+..++.++...|+        ..++.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-----------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            466677899999999999999999999665544221           112233334444444444        3457778


Q ss_pred             CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          156 QEKSRILGNLAWAYMQQ-NNFEMAEQYYRKALS--LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~q-GryeEAe~~yrkALe--idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |.+..++.++|.+|... |++++|+.+|+++++  ..|++.. ++++|.+|..+|++++|+.+|+++++..|.+.
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  147 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP  147 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999 999999999999999  6666677 99999999999999999999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.36  E-value=5.6e-12  Score=106.67  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048           84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG  163 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~  163 (575)
                      .+....+++.+|.++...|++++|+.++..                                     ++.++|++..+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~~   54 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTE-------------------------------------AIKRNPKDAKLYS   54 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHH-------------------------------------HHTTCTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHcCCCcHHHHH
Confidence            345677899999999999999999998433                                     2456888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++.+|.+.
T Consensus        55 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            9999999999999999999999999999999 99999999999999999999999999988654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.36  E-value=7.3e-11  Score=114.15  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048           56 PYVRAKHIQLI----DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLK  127 (575)
Q Consensus        56 ~yarA~~l~l~----~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~  127 (575)
                      .+...+.++..    .+++++|+.+|+++++.+  +..++++||.+|..    .+++++|+.++..+++.          
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------  107 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------  107 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------
Confidence            34444455555    666666666666666654  45566666666666    66666666664443321          


Q ss_pred             hhHHHHHHHhHHHHHHHH----hch--------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 038048          128 NIEEGIAFAGVKTKMARS----QGK--------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVD  191 (575)
Q Consensus       128 l~~~a~a~~~nla~al~s----qg~--------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPd  191 (575)
                         .....+.+++.++..    .++        +.++  +..+..++++||.+|..    .+++++|+.+|++++++.  
T Consensus       108 ---~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--  180 (273)
T 1ouv_A          108 ---KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--  180 (273)
T ss_dssp             ---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             ---CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence               011233445555544    333        1223  33467788899999988    899999999999998873  


Q ss_pred             CHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHcC
Q 038048          192 MNK-QCNLAICLMH----MNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       192 n~~-~~NLA~iy~~----qGr~eEAi~lLekALel~P  223 (575)
                      +.. +++||.+|..    .+++++|+.+|+++++..+
T Consensus       181 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          181 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            456 8889999998    8999999999999888754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.36  E-value=5.2e-12  Score=114.25  Aligned_cols=103  Identities=15%  Similarity=0.019  Sum_probs=93.7

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ..+...+..+...+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..                     
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------   80 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY---------------------   80 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------
Confidence            34555667788899999999999999999999999999999999999999999998544                     


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                      ++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        81 ----------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           81 ----------------GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             ----------------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             ----------------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence                            35678999999999999999999999999999999999999886

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=1.7e-12  Score=120.80  Aligned_cols=140  Identities=17%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .+++++|...|.......+.....+..+|.++...|+|++|+.++..++.                              
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------------------   66 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD------------------------------   66 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Confidence            34455555555444443344456788999999999999999998655432                              


Q ss_pred             chhhHHhhcCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048          147 GKKIQITVEQEK----------------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT  209 (575)
Q Consensus       147 g~k~aL~L~Pd~----------------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e  209 (575)
                             +.|.+                ..+++++|.+|..+|+|++|+.+|+++++++|++.. ++++|.+|..+|+++
T Consensus        67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  139 (198)
T 2fbn_A           67 -------FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE  139 (198)
T ss_dssp             -------TTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             -------HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHH
Confidence                   12222                268999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhc
Q 038048          210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELE  246 (575)
Q Consensus       210 EAi~lLekALel~P~n~~~~~~l~slerA~elL~ele  246 (575)
                      +|+.+|+++++++|++.   .....+..+...+.+..
T Consensus       140 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          140 EAKENLYKAASLNPNNL---DIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             HHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHHH
Confidence            99999999999999754   23344444444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.36  E-value=1.1e-10  Score=113.01  Aligned_cols=150  Identities=14%  Similarity=0.039  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      .+...+..+...+++++|+.+|+++++  ++...++++||.+|..    .+++++|+.++..+++..             
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------   72 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------------   72 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------------
Confidence            445566777888999999999999999  6677899999999999    999999999976654421             


Q ss_pred             HHHHHhHHHHHHHH----hch------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048          132 GIAFAGVKTKMARS----QGK------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QC  196 (575)
Q Consensus       132 a~a~~~nla~al~s----qg~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~  196 (575)
                      ....+.+++.++..    .++      .....++.++..++++||.+|..    .+++++|+.+|++|+++.  +.. ++
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  150 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT  150 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence            11223344444444    333      01112234588899999999999    999999999999999986  566 99


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHc
Q 038048          197 NLAICLMH----MNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       197 NLA~iy~~----qGr~eEAi~lLekALel~  222 (575)
                      +||.+|..    .+++++|+.+|+++++..
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  180 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK  180 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            99999999    999999999999999874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.35  E-value=3e-11  Score=120.85  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINA------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRI  115 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL  115 (575)
                      ..+..+...+++++|+.+|++++..      .+....++.++|.+|...|++++|+.++..++
T Consensus        52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  114 (406)
T 3sf4_A           52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  114 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555566666666666666554      12224456666666666666666666644433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.35  E-value=6.4e-12  Score=111.45  Aligned_cols=107  Identities=14%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..++..+++++|+.+|++++..+|.+..++++||.+|..+|++++|+.++..                      
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------------   77 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY----------------------   77 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH----------------------
Confidence            3445567778899999999999999999999999999999999999999999998544                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                     ++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++. ...+.
T Consensus        78 ---------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           78 ---------------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             ---------------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             ---------------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence                           35678999999999999999999999999999999999999887 44333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.35  E-value=6.5e-13  Score=141.99  Aligned_cols=137  Identities=15%  Similarity=0.053  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      ++++|+..|.+++...|....+++++|.+|.++|+|++|+..|..+++......     ...                 .
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~-----------------~  306 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-----GLS-----------------E  306 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-----SCC-----------------H
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-----cCC-----------------h
Confidence            456788888888888888888999999999999999999999766543211100     000                 0


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      .....+++....+|+++|.+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++..
T Consensus       307 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            0001122333579999999999999999999999999999999999 999999999999999999999999999998763

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.35  E-value=6.2e-12  Score=107.26  Aligned_cols=100  Identities=19%  Similarity=0.138  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH---HHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS---RILGNLA  166 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~---~a~~nLG  166 (575)
                      +++.+|.++...|++++|+..+...                                     +...|++.   .+++++|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~p~~~~~~~~~~~lg   46 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSF-------------------------------------LELYPNGVYTPNALYWLG   46 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCSSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH-------------------------------------HHHCCCCcccHHHHHHHH
Confidence            5788999999999999999985332                                     34466666   7999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          167 WAYMQQNNFEMAEQYYRKALSLGVDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       167 ~aY~~qGryeEAe~~yrkALeidPdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|..+|++++|+.+|++++.++|++   .. ++++|.+|..+|++++|+.+|++++...|++.
T Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            99999999999999999999999999   77 99999999999999999999999999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=3.8e-11  Score=111.98  Aligned_cols=146  Identities=16%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      |.....+...+.++...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++..           +
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------~  156 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----------E  156 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------T
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------C
Confidence            33344455566777889999999999999999999999999999999999999999999865544321           1


Q ss_pred             HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048          131 EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC  201 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i  201 (575)
                      .....+..++.++...|+        ..++...|++..++..+|.+|..+|++++|+.+|+++++++|++.. +..++.+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            112233344444444444        3456778999999999999999999999999999999999999999 8888877


Q ss_pred             HHHcCC
Q 038048          202 LMHMNR  207 (575)
Q Consensus       202 y~~qGr  207 (575)
                      ....|+
T Consensus       237 ~~~~~~  242 (243)
T 2q7f_A          237 GHHHHH  242 (243)
T ss_dssp             ------
T ss_pred             HhhccC
Confidence            665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=7e-12  Score=129.82  Aligned_cols=50  Identities=18%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HCCCHHHHHHHHhcCHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMK---QLDRSDEAIEARSGRIE  116 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~---qqGrydEAie~~~gaLe  116 (575)
                      .+++++|+.+|++|+.++|+++.++.++|.++.   ..+++++|++.+..+++
T Consensus       151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            467999999999999999999999999998855   45777778777544433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.34  E-value=3.5e-11  Score=99.78  Aligned_cols=71  Identities=25%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .|++..+++++|.+|...|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.+|++++...|++
T Consensus        39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4555556666666666666666666666666666666665 6666666666666666666666666666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.33  E-value=1.7e-11  Score=102.60  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      +....+++.+|.++...|++++|+.++...                                     +.+.|++..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~   51 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKA-------------------------------------IELNPANAVYFCN   51 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHH-------------------------------------HHcCCCCHHHHHH
Confidence            344568889999999999999999985432                                     4457888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++...|++.
T Consensus        52 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            999999999999999999999999999999 99999999999999999999999999998654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.33  E-value=3.7e-11  Score=122.76  Aligned_cols=164  Identities=12%  Similarity=-0.005  Sum_probs=121.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGD------RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE  131 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p------~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~  131 (575)
                      ...+......+++++|+.+|++|+.+..      ....++++||.+|..+|++++|+.++..+++.......    ....
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~~~~  180 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL----YSIR  180 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT----CHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC----chhh
Confidence            3355667889999999999999997632      23568999999999999999999997666554332110    0001


Q ss_pred             HHHHHhHHHHHHHHhch--------hhHHhhc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 038048          132 GIAFAGVKTKMARSQGK--------KIQITVE------QEKSRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVDM  192 (575)
Q Consensus       132 a~a~~~nla~al~sqg~--------k~aL~L~------Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe-----idPdn  192 (575)
                      ....+.+++.++...|+        ..++.+.      +....++++||.+|..+|++++|+.+|++|++     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            11234455555555554        1222221      12245899999999999999999999999999     67777


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          193 NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       193 ~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .. +++||.+|..+|++++|+.++++++++.+..
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            66 8999999999999999999999999997653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.33  E-value=1.8e-11  Score=124.12  Aligned_cols=169  Identities=15%  Similarity=0.133  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcC------------------
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGR------------------  114 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~ga------------------  114 (575)
                      +...+..+...+++++|+.+|++++..+|.+.    .+++.+|.+|..+|++++|+.++..+                  
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            33455666677777777777777777777654    46677777777777777777763332                  


Q ss_pred             -----------HHHHHHHHHHHHHh------hHHHHHHHhHHHHHHHHhch-------------------------hhHH
Q 038048          115 -----------IEEEIELLQNKLKN------IEEGIAFAGVKTKMARSQGK-------------------------KIQI  152 (575)
Q Consensus       115 -----------LeeAi~lL~~~L~l------~~~a~a~~~nla~al~sqg~-------------------------k~aL  152 (575)
                                 +++++..+...+..      .......+.+++.++...|+                         ..++
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence                       22333333333322      11111223333333333322                         0111


Q ss_pred             hh------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          153 TV------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN------K-QCNLAICLMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       153 ~L------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~------~-~~NLA~iy~~qGr~eEAi~lLekAL  219 (575)
                      .+      .+....++.++|.+|..+|++++|+.+|++++++.++..      . ++++|.+|..+|++++|+.+|++++
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            11      233345888889999999999999999999988876422      1 6688999999999999999999988


Q ss_pred             HHcCCC
Q 038048          220 ISAGNR  225 (575)
Q Consensus       220 el~P~n  225 (575)
                      .+.+..
T Consensus       291 ~~~~~~  296 (411)
T 4a1s_A          291 ALAVEL  296 (411)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            887643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=1.9e-11  Score=100.63  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..+++.+|.++...|++++|+.++..                                     ++.+.|++..+++++|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------~~~~~~~~~~~~~~~a~   46 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSE-------------------------------------AIKLDPHNHVLYSNRSA   46 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHH-------------------------------------HHHHCCCcHHHHHHHHH
Confidence            46788999999999999999998533                                     24557888999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++..|++.
T Consensus        47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           47 AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999999 99999999999999999999999999988654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-11  Score=105.70  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HH
Q 038048           84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SR  160 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~  160 (575)
                      ++.....++.+|.++...|++++|+.++..                                     ++.+.|++   ..
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------a~~~~~~~~~~~~   66 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQ-------------------------------------ALGLDATPQDQAV   66 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------------HHTSCCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------------HHHHcccchHHHH
Confidence            455677888999999999999999998533                                     24557776   77


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus        67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A           67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            9999999999999999999999999999999998 99999999999999999999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.33  E-value=3.2e-11  Score=115.98  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ..++.++|.+|..+|++++|+.+|++++++.+...      . +.++|.+|..+|++++|+.+|++++.+.+.
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            34667777777777777777777777776643221      1 556777777777777777777777766554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.33  E-value=6.3e-12  Score=113.21  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINA------------------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE  118 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l------------------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA  118 (575)
                      +...+..++..+++++|+.+|.++|..                  +|....+++++|.+|..+|+|++|+..+..     
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~-----   88 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE-----   88 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-----
Confidence            345667778899999999999999998                  677778999999999999999999998433     


Q ss_pred             HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HH
Q 038048          119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K-QC  196 (575)
Q Consensus       119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~-~~  196 (575)
                                                      ++.++|++..+++++|.+|..+|++++|+..|+++++++|++. . ..
T Consensus        89 --------------------------------al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  136 (162)
T 3rkv_A           89 --------------------------------VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR  136 (162)
T ss_dssp             --------------------------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             --------------------------------HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence                                            3567999999999999999999999999999999999999999 4 66


Q ss_pred             HHHHHHHHcCCHH
Q 038048          197 NLAICLMHMNRVT  209 (575)
Q Consensus       197 NLA~iy~~qGr~e  209 (575)
                      .|+.+....++..
T Consensus       137 ~l~~~~~~~~~~~  149 (162)
T 3rkv_A          137 EMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.33  E-value=1e-11  Score=117.53  Aligned_cols=102  Identities=12%  Similarity=0.132  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH---
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN---  164 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n---  164 (575)
                      ...+...|..+...|++++|+.++..+++                                     ++|++..+++.   
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------~~p~~~~~~~~~~~   46 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-------------------------------------LNIDRTEMYYWTNV   46 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------HCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------hCCCChHHHHHhhh
Confidence            45677899999999999999998655433                                     34444444444   


Q ss_pred             -------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          165 -------------LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       165 -------------LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                                   +|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus        47 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence                         999999999999999999999999999999 99999999999999999999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=2.5e-11  Score=101.83  Aligned_cols=116  Identities=12%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..+++.+|.++...|++++|+.++..+                                     +.+.|++..+++++|.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-------------------------------------~~~~~~~~~~~~~la~   46 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKA-------------------------------------KELDPTNMTYITNQAA   46 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------------------------HhcCCccHHHHHHHHH
Confidence            467889999999999999999985432                                     4457888899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHH
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDM-------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAI  239 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn-------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~  239 (575)
                      +|..+|++++|+.+|++++.+.|++       .. ++++|.+|..+|++++|+.+|+++++..|+ .   .....+..+.
T Consensus        47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~l~~~~  122 (131)
T 1elr_A           47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P---DVLKKCQQAE  122 (131)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H---HHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-H---HHHHHHHHHH
Confidence            9999999999999999999999877       77 899999999999999999999999999873 2   2333444444


Q ss_pred             HHHHH
Q 038048          240 QMLTE  244 (575)
Q Consensus       240 elL~e  244 (575)
                      ..+.+
T Consensus       123 ~~~~~  127 (131)
T 1elr_A          123 KILKE  127 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.32  E-value=1.6e-12  Score=140.07  Aligned_cols=127  Identities=11%  Similarity=0.072  Sum_probs=110.9

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      +...+++++|+.+|++|++.+|....+++++|.+|.++|++++|++.+..                              
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------------------   65 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR------------------------------   65 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------------
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH------------------------------
Confidence            34578999999999999999999999999999999999999999998543                              


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH--HHHcCCHHHHHHHHH----
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC--LMHMNRVTEAKSLLQ----  216 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i--y~~qGr~eEAi~lLe----  216 (575)
                             ++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+++.+  +..+|++++|+.+++    
T Consensus        66 -------al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~  138 (477)
T 1wao_1           66 -------AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  138 (477)
T ss_dssp             -------HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred             -------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                   35678999999999999999999999999999999999999998 8899988  999999999999999    


Q ss_pred             -------HHHHHcCCCCC
Q 038048          217 -------AVKISAGNRQM  227 (575)
Q Consensus       217 -------kALel~P~n~~  227 (575)
                             +++.+.|+..+
T Consensus       139 ~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          139 VVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             TTTCCTTSSCCCCTTCCS
T ss_pred             hHhhhhhhhccccccccc
Confidence                   88888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=1.7e-11  Score=115.91  Aligned_cols=128  Identities=15%  Similarity=0.153  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS  159 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~  159 (575)
                      ..+++.+|.+|...|++++|+.++..+++..           +.....+..++.++...|+        ..++.++|.+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  105 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA  105 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence            4577889999999999999999966654431           1112233344444444444        34577789999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++.++|.+|..+|++++|+.+|++++.  ..|++.. ++++|.+|..+|++++|+.+|+++++..|.+.
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  175 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP  175 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH
Confidence            9999999999999999999999999999  8888888 99999999999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.31  E-value=4.1e-11  Score=115.65  Aligned_cols=138  Identities=12%  Similarity=-0.056  Sum_probs=106.0

Q ss_pred             HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHH
Q 038048           81 INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQI  152 (575)
Q Consensus        81 L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL  152 (575)
                      ....+....+++.+|.++.+.|+|++|+..+...++....        .......+..++.++...|+        ..++
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--------HEWAADAQFYLARAYYQNKEYLLAASEYERFI   79 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3457788899999999999999999999996554432110        00002333444555555554        3456


Q ss_pred             hhcC---CcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHH-H-----------------HHHHHHHH
Q 038048          153 TVEQ---EKSRILGNLAWAYMQ--------QNNFEMAEQYYRKALSLGVDMNK-Q-----------------CNLAICLM  203 (575)
Q Consensus       153 ~L~P---d~~~a~~nLG~aY~~--------qGryeEAe~~yrkALeidPdn~~-~-----------------~NLA~iy~  203 (575)
                      .+.|   ....+++++|.+|..        +|++++|+..|+++++++|++.. .                 +++|.+|.
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  159 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE  159 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666   446799999999999        99999999999999999999875 4                 88999999


Q ss_pred             HcCCHHHHHHHHHHHHHHcCCCC
Q 038048          204 HMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|++++|+..|+++++..|++.
T Consensus       160 ~~g~~~~A~~~~~~~l~~~p~~~  182 (261)
T 3qky_A          160 RRELYEAAAVTYEAVFDAYPDTP  182 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HccCHHHHHHHHHHHHHHCCCCc
Confidence            99999999999999999999765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=2.5e-11  Score=106.82  Aligned_cols=106  Identities=17%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      -..|..+...+++++|+.+|.+||+++|.+..+++++|.+|..+|+|++|+..+..+++.......              
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------   77 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--------------   77 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--------------
Confidence            356778889999999999999999999999999999999999999999999986554432111000              


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                                      ..+....+++++|.+|..+|++++|+.+|+++|++.|+..
T Consensus        78 ----------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           78 ----------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence                            0001134889999999999999999999999999998643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=7e-11  Score=97.24  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|.+..+++++|.+|...|++++|+..+..                       
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-----------------------   63 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK-----------------------   63 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHH-----------------------
Confidence            344556778899999999999999999999999999999999999999999987433                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                                    ++.+.|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.+.
T Consensus        64 --------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           64 --------------TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             --------------HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence                          24557888999999999999999999999999999999999998 88888775

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=2.7e-11  Score=104.30  Aligned_cols=137  Identities=12%  Similarity=0.064  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      +...+..+...+++++|+.+|++++...+..      ..++.++|.+|..+|++++|+.++..+++.....         
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---------   82 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---------   82 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------
Confidence            3445566778899999999999999875432      2478999999999999999999865543321100         


Q ss_pred             HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHH
Q 038048          131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLM  203 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~  203 (575)
                                            .-.+....+++++|.+|..+|++++|+.+|++++++.+..      .. +.+||.+|.
T Consensus        83 ----------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           83 ----------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             ----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence                                  0001113488999999999999999999999999884322      23 679999999


Q ss_pred             HcCCHHHHHHHHHHHHHHcCC
Q 038048          204 HMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P~  224 (575)
                      .+|++++|+.++++++++...
T Consensus       141 ~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          141 ALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTT
T ss_pred             HccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.29  E-value=5.8e-11  Score=98.46  Aligned_cols=113  Identities=20%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINA-GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l-~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      .+...+..+...+++++|+.+|.++ -. .|....+++.+|.+|...|++++|+.++..                     
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---------------------   68 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKA-LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK---------------------   68 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHH---------------------
Confidence            4455566777888999999888764 42 566778889999999999999999887433                     


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                                      ++.+.|.+..+++++|.+|..+|++++|+.+|+++++++|++.. +.+||.++..+|
T Consensus        69 ----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           69 ----------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ----------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ----------------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                            24457888999999999999999999999999999999999999 999999998765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.29  E-value=1.3e-11  Score=107.94  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=85.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      ...+..++..+++++|+..|++++..+|++..+++.||.++...|++++|+.++..                        
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~------------------------   76 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH------------------------   76 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Confidence            44456678899999999999999999999999999999999999999999998533                        


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                                   ++.++|++..++++||.+|..+|++++|+.+|+++++++|++.
T Consensus        77 -------------al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           77 -------------ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             -------------HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             -------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence                         3567999999999999999999999999999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.29  E-value=4.9e-11  Score=119.29  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCC--------------------HHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDR--------------------SDEAIEA  110 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGr--------------------ydEAie~  110 (575)
                      +...+.++...|++++|+.+|.+++...+..      ..++.++|.+|...|+                    +++|+.+
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            3345566677899999999999999875543      4489999999999999                    8888887


Q ss_pred             HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCC------cHHHHHHHHHHHHHcCCHH
Q 038048          111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQE------KSRILGNLAWAYMQQNNFE  176 (575)
Q Consensus       111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd------~~~a~~nLG~aY~~qGrye  176 (575)
                      +..+++.....     .........+.+++.++...|+        ..++.+.+.      ...+++++|.+|..+|+++
T Consensus       170 ~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          170 YEENLSLVTAL-----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            55544332111     0001111223334444444333        112222211      1226777777777777777


Q ss_pred             HHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          177 MAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       177 EAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +|+.+|++++++.|+.      .. +.++|.+|..+|++++|+.+|++++.+.+.
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            7777777777766544      33 567777777777777777777777776553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.29  E-value=1.9e-11  Score=130.63  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE  120 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~  120 (575)
                      .+...+..++..+++++|+.+|.+||.++|..               ..+++++|.+|.++|+|++|+.++..       
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-------  342 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK-------  342 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------
Confidence            34455667788999999999999999999987               68999999999999999999998544       


Q ss_pred             HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                                    ++.++|++..+++++|.+|..+|+|++|+.+|++|++++|++.. +.+|+
T Consensus       343 ------------------------------al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          343 ------------------------------ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             ------------------------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred             ------------------------------HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                                          35678999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHH-HHHHHH
Q 038048          200 ICLMHMNRVTEAKSL-LQAVKI  220 (575)
Q Consensus       200 ~iy~~qGr~eEAi~l-LekALe  220 (575)
                      .++..+|++++|... +.+++.
T Consensus       393 ~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          393 MCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998754 444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.29  E-value=3.5e-11  Score=122.01  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHH---------------------------HHHHHHHHHHHh------hHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIE---------------------------EEIELLQNKLKN------IEEGIA  134 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLe---------------------------eAi~lL~~~L~l------~~~a~a  134 (575)
                      ...++.+|.++...|++++|+.++..+++                           +++..+...+..      ......
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34566789999999999999998444433                           333333333322      122223


Q ss_pred             HHhHHHHHHHHhch--------hhHHhh------cCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 038048          135 FAGVKTKMARSQGK--------KIQITV------EQEKSRILGNLAWAYMQQNN-----------------FEMAEQYYR  183 (575)
Q Consensus       135 ~~~nla~al~sqg~--------k~aL~L------~Pd~~~a~~nLG~aY~~qGr-----------------yeEAe~~yr  183 (575)
                      .+..++.++...|+        ..++.+      .+....+++++|.+|..+|+                 +++|+.+|+
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            34555555555555        122333      34445577888888888888                 888888888


Q ss_pred             HHHHhCC------CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          184 KALSLGV------DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       184 kALeidP------dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +++++.+      .... +.++|.+|..+|++++|+.+|++++++.+.
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            8877642      2223 667888888888888888888888877664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.28  E-value=2.5e-11  Score=104.56  Aligned_cols=114  Identities=11%  Similarity=0.139  Sum_probs=97.6

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ..+...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..                     
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------------------   68 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR---------------------   68 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Confidence            34556677788999999999999999999999999999999999999999999987433                     


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH-HHHHHHHHHHc
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-----MNK-QCNLAICLMHM  205 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd-----n~~-~~NLA~iy~~q  205 (575)
                                      ++.++|++..+++++|.+|..+|++++|+.+|+++++++|+     +.. ...|..+....
T Consensus        69 ----------------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           69 ----------------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             ----------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             ----------------HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence                            35668999999999999999999999999999999999998     444 55555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.28  E-value=5.7e-11  Score=104.53  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ...++.+|.++...|++++|+.++..+                                     +.++|++..+++++|.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~a-------------------------------------l~~~~~~~~~~~~~a~   55 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQA-------------------------------------IELNPSNAIYYGNRSL   55 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH-------------------------------------HHhCCCChHHHHHHHH
Confidence            457889999999999999999985432                                     4568888999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++.+.|.+.
T Consensus        56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999 99999999999999999999999999999764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.28  E-value=4e-12  Score=126.62  Aligned_cols=131  Identities=10%  Similarity=0.075  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..                      
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------------   63 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR----------------------   63 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence            3445567778889999999999999999999999999999999999999999987433                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HH---------------
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QC---------------  196 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~---------------  196 (575)
                                     ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++..    ..               
T Consensus        64 ---------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
T 2c2l_A           64 ---------------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  128 (281)
T ss_dssp             ---------------HTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ---------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence                           35678999999999999999999999999999999999987631    11               


Q ss_pred             -------------HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          197 -------------NLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       197 -------------NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                                   .|+.+  ..|++++|+..|+++++++|++
T Consensus       129 ~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A          129 EERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccch
Confidence                         12222  3688889999999888888754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=5.4e-11  Score=118.31  Aligned_cols=139  Identities=15%  Similarity=0.016  Sum_probs=105.5

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      ++++|+.+|.++              |.+|..+|++++|+.++..+++.....     .........+.+++.++...|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~   92 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKA-----GNEDEAGNTYVEAYKCFKSGGN   92 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHCCC
Confidence            388888888876              678999999999999987766543211     1111112345566666666655


Q ss_pred             --------hhHHhhcCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcC
Q 038048          149 --------KIQITVEQEK------SRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMN  206 (575)
Q Consensus       149 --------k~aL~L~Pd~------~~a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qG  206 (575)
                              ..++.+.+..      ..++.++|.+|..+ |++++|+.+|++|+++.|+.      .. +.++|.+|..+|
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  172 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence                    2344444322      45899999999996 99999999999999998865      34 789999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCCC
Q 038048          207 RVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n~  226 (575)
                      ++++|+.+|++++++.|++.
T Consensus       173 ~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          173 QYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             CHHHHHHHHHHHHHTTSSCT
T ss_pred             CHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=2.2e-10  Score=114.42  Aligned_cols=169  Identities=12%  Similarity=-0.007  Sum_probs=120.6

Q ss_pred             hhhhHhhc-CCCCCcHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHH
Q 038048           42 DIFHVIHK-VPSGDSPYVRAKHIQL-------IDKDP-------SRAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSD  105 (575)
Q Consensus        42 e~y~~~~~-~ps~d~~yarA~~l~l-------~~kd~-------eeAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGryd  105 (575)
                      ..|..... .|.....+...+....       ..|++       ++|+..|++|+. ++|++..++.++|.++...|+++
T Consensus        37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~  116 (308)
T 2ond_A           37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  116 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence            35555444 3444434444444433       24775       899999999999 79999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhhHHHHH-HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH-cCCH
Q 038048          106 EAIEARSGRIEEEIELLQNKLKNIEEGIA-FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ-QNNF  175 (575)
Q Consensus       106 EAie~~~gaLeeAi~lL~~~L~l~~~a~a-~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~-qGry  175 (575)
                      +|+.++.++++...           .... .+.+++..+...|+        ..++.+.|....++...+.+... +|++
T Consensus       117 ~A~~~~~~al~~~p-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          117 KVHSIYNRLLAIED-----------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHHHHHHTSSS-----------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHHhccc-----------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence            99998766544211           1111 22233333333332        34566778777777666655433 7999


Q ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          176 EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       176 eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      ++|+.+|+++++++|++.. +.++|.++..+|++++|+.+|++++..
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988 899999999999999999999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.27  E-value=2.2e-11  Score=121.29  Aligned_cols=105  Identities=23%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN  164 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n  164 (575)
                      |....+++.+|.+|...|++++|+.++..                                     ++.++|++..++++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~   43 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGR-------------------------------------AITRNPLVAVYYTN   43 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCSCCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCccHHHHHH
Confidence            45567899999999999999999998544                                     25568999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|.+|..+|++++|+.+|++|++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus        44 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           44 RALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999999999999 99999999999999999999999999999764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=4.9e-11  Score=119.73  Aligned_cols=164  Identities=6%  Similarity=-0.015  Sum_probs=92.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHH--------------------hcCHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEAR--------------------SGRIEEEIE  120 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~--------------------~gaLeeAi~  120 (575)
                      +.+++.|++..|+..+++....+|.+ .++.+.++.+|..+|++++|+..+                    .+..+.++.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~   86 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA   86 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence            34567778888888777766666655 346677778888888888887651                    122333444


Q ss_pred             HHHHHHHh--hHHHHHHHhHHHHHHHHhch-hhHH--hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Q 038048          121 LLQNKLKN--IEEGIAFAGVKTKMARSQGK-KIQI--TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-  194 (575)
Q Consensus       121 lL~~~L~l--~~~a~a~~~nla~al~sqg~-k~aL--~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-  194 (575)
                      .++..+..  .+....++..++.++...|+ ..++  .-.|++..++.++|.+|..+|++++|+..|+++++++|++.. 
T Consensus        87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  166 (291)
T 3mkr_A           87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT  166 (291)
T ss_dssp             HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH
Confidence            44443321  12233344455555555555 1111  112556666666666666666666666666666666666543 


Q ss_pred             HHHHH--HHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          195 QCNLA--ICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       195 ~~NLA--~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ....+  .++...|++++|+.+|+++++..|++
T Consensus       167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~  199 (291)
T 3mkr_A          167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT  199 (291)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence            22212  33334466666666666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.26  E-value=4.3e-12  Score=130.27  Aligned_cols=129  Identities=16%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVD-----------------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL  122 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----------------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL  122 (575)
                      .+..++..+++++|+.+|.+++...|.+.                 .+++++|.+|..+|+|++|+.++..         
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~---------  255 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI---------  255 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH---------
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Confidence            34444556788888888888888777654                 2566666666666666666665322         


Q ss_pred             HHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048          123 QNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC  201 (575)
Q Consensus       123 ~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i  201 (575)
                                                  ++.++|++..+++++|.+|..+|+|++|+.+|++|++++|++.. +.+|+.+
T Consensus       256 ----------------------------al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          256 ----------------------------VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             ----------------------------HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             ----------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence                                        23445666666666666666666666666666666666666666 6666665


Q ss_pred             -HHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          202 -LMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       202 -y~~qGr~eEAi~lLekALel~P~n  225 (575)
                       ....+..+++..+|.+++...|++
T Consensus       308 ~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          308 AEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCC
Confidence             334555666666666666666544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.26  E-value=6.2e-11  Score=117.30  Aligned_cols=64  Identities=13%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHH-HHHHHHHHHHcC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEA-KSLLQAVKISAG  223 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEA-i~lLekALel~P  223 (575)
                      .+++++|.+|..+|+|++|+.+|++|+++.++.      .. ++++|.+|..+|++++| ..+|++++.+..
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999986431      34 88999999999999999 888999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.26  E-value=6.8e-11  Score=113.64  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      +...+......+++++|+.+|++++..+|.+.    .++..+|.+|...|++++|+.++..+++.....-     .....
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~   82 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-----DQLGE   82 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----ccHHH
Confidence            34456777889999999999999999998874    6788999999999999999999766655432210     01111


Q ss_pred             HHHHhHHHHHHHHhch--------hhHHhhcC------CcHHHHHHHHHHHHHcCC--------------------HHHH
Q 038048          133 IAFAGVKTKMARSQGK--------KIQITVEQ------EKSRILGNLAWAYMQQNN--------------------FEMA  178 (575)
Q Consensus       133 ~a~~~nla~al~sqg~--------k~aL~L~P------d~~~a~~nLG~aY~~qGr--------------------yeEA  178 (575)
                      ...+..++..+...|+        ..++.+.+      ....++.++|.+|..+|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            1233344444444444        11222222      124489999999999999                    9999


Q ss_pred             HHHHHHHHHhC------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          179 EQYYRKALSLG------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       179 e~~yrkALeid------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +.+|++++.+.      +.... +.++|.+|..+|++++|+.++++++++.+..
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  216 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF  216 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            99999999873      22334 7899999999999999999999999987643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=7.3e-11  Score=101.84  Aligned_cols=112  Identities=14%  Similarity=0.038  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .+...+..++..+++++|+.+|++++..+|+.   ..+++++|.+|..+|++++|+.++..                   
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------   90 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK-------------------   90 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------
Confidence            34455667788899999999999999999987   78999999999999999999988433                   


Q ss_pred             HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                                        ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +..++.+...
T Consensus        91 ------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           91 ------------------AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             ------------------HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             ------------------HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence                              24568888999999999999999999999999999999999998 7777776543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=4e-11  Score=118.70  Aligned_cols=130  Identities=12%  Similarity=0.042  Sum_probs=96.4

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      +...+++++|+.+|++++......      ..++++||.+|..+|++++|+.++..+++.....                
T Consensus       125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~----------------  188 (293)
T 3u3w_A          125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL----------------  188 (293)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS----------------
T ss_pred             HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------------
Confidence            334457888888888888753321      2367888888888888888888755543311000                


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCC-HH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNR-VT  209 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr-~e  209 (575)
                                    ....+....+++|+|.+|..+|+|++|+.+|++|+++.+..      .. ++++|.+|..+|+ ++
T Consensus       189 --------------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  254 (293)
T 3u3w_A          189 --------------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA  254 (293)
T ss_dssp             --------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred             --------------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHH
Confidence                          00122334589999999999999999999999999987544      45 8899999999995 69


Q ss_pred             HHHHHHHHHHHHcC
Q 038048          210 EAKSLLQAVKISAG  223 (575)
Q Consensus       210 EAi~lLekALel~P  223 (575)
                      +|+.+|++++.+..
T Consensus       255 ~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          255 EIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.24  E-value=1.4e-10  Score=118.12  Aligned_cols=158  Identities=11%  Similarity=-0.055  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGD-------RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p-------~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      .+...+.++...+++++|+.+|.+|+.+.+       ....++++||.+|..+|++++|+.++..+++.....-     .
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~  219 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-----Q  219 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-----C
Confidence            345566777889999999999999998733       2345899999999999999999999777665433221     0


Q ss_pred             hHHHHHHHhHHHHHHHHhch--------hhHHh-----hc-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 038048          129 IEEGIAFAGVKTKMARSQGK--------KIQIT-----VE-QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----  189 (575)
Q Consensus       129 ~~~a~a~~~nla~al~sqg~--------k~aL~-----L~-Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----  189 (575)
                      .......+.+++.++...|+        ..++.     .+ |....++++||.+|..+|++++|+.+|++|+++.     
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  299 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD  299 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            11111345566666666666        22333     24 7778899999999999999999999999999984     


Q ss_pred             CCCHH-HHHHHHHHHHcCC---HHHHHHHHHHH
Q 038048          190 VDMNK-QCNLAICLMHMNR---VTEAKSLLQAV  218 (575)
Q Consensus       190 Pdn~~-~~NLA~iy~~qGr---~eEAi~lLekA  218 (575)
                      |.... ..+||.+|...|+   +++|+.+++++
T Consensus       300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            33333 4567777777777   66666666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.23  E-value=2.4e-10  Score=97.29  Aligned_cols=112  Identities=10%  Similarity=-0.093  Sum_probs=93.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVD---SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~---~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ...+...+..+++++|+.+|.+++..+|++.   .+++.+|.+|..+|++++|+..+..                     
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~---------------------   64 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD---------------------   64 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH---------------------
Confidence            3445667889999999999999999999887   7999999999999999999998533                     


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                                      ++...|++   ..+++++|.+|..+|++++|+.+|+++++..|++.. ...+..+-...+
T Consensus        65 ----------------~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           65 ----------------LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             ----------------HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             ----------------HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence                            24457777   789999999999999999999999999999999987 555544444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.23  E-value=7.3e-11  Score=107.56  Aligned_cols=138  Identities=14%  Similarity=-0.010  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINA------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .+...+.++...+++++|+.+|++++..      .+....+++++|.+|..+|++++|+.++..+++...          
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------   97 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA----------   97 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence            4455667778899999999999999983      334456899999999999999999998554432110          


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-----HHHHHHH
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-----QCNLAIC  201 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-----~~NLA~i  201 (575)
                                     ..+      -++ ....+++++|.+|..+|++++|+.+|++++++.+.  +..     +.+||.+
T Consensus        98 ---------------~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  156 (203)
T 3gw4_A           98 ---------------SLP------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL  156 (203)
T ss_dssp             ---------------HSC------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------------HcC------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence                           000      001 12348899999999999999999999999987432  221     4799999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHcCC
Q 038048          202 LMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       202 y~~qGr~eEAi~lLekALel~P~  224 (575)
                      |..+|++++|+.++++++++...
T Consensus       157 ~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          157 AQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.22  E-value=3.5e-11  Score=113.36  Aligned_cols=108  Identities=13%  Similarity=0.089  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDR-------VD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN  124 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~-------~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~  124 (575)
                      +...+..++..|++++|+..|++||+++|.       ..     .+|+|+|.++..+|+|++|+..+..+++.    +  
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----~--   87 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----F--   87 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----H--
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----h--
Confidence            344566778889999999999999999998       43     39999999999999999999996554331    1  


Q ss_pred             HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL----GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~----~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                              ...+.++|++..+|    +++|.+|..+|++++|+.+|++||+++|++..
T Consensus        88 ------------------------n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           88 ------------------------NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             ------------------------HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ------------------------hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                                    12356799999999    99999999999999999999999999998876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.22  E-value=1.2e-11  Score=106.18  Aligned_cols=70  Identities=11%  Similarity=0.156  Sum_probs=39.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      |++..++++||.+|..+|+|++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++...|++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            344445555555555555555555555555555555555 5555555555555555555555555555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.22  E-value=6.4e-11  Score=123.72  Aligned_cols=113  Identities=11%  Similarity=0.003  Sum_probs=84.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHH-HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIEL-LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~l-L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      ..+|.+|...|+|++|+..+..+++..... ......                      ....++|....+++++|.+|.
T Consensus       227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA----------------------DGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHH----------------------HHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChH----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            356777888888888887777666532221 000000                      012335556678899999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~  341 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  341 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999988 88999999999999999999999999988754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.22  E-value=1.9e-11  Score=115.06  Aligned_cols=97  Identities=9%  Similarity=0.011  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      .+++|+..|+++++++|+++.+++++|.++..+++++.++...                                     
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------------------   59 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------------------   59 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------------------
Confidence            4688999999999999999999999999999888887666530                                     


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-----------CHHHHHHHHH
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-----------RVTEAKSLLQ  216 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-----------r~eEAi~lLe  216 (575)
                                              +.+++|+..|++||+++|++.. ++|||++|..+|           ++++|+.+|+
T Consensus        60 ------------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           60 ------------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence                                    1267777788888888888777 777888877764           7888888888


Q ss_pred             HHHHHcCCCC
Q 038048          217 AVKISAGNRQ  226 (575)
Q Consensus       217 kALel~P~n~  226 (575)
                      +|++++|++.
T Consensus       116 kAl~l~P~~~  125 (158)
T 1zu2_A          116 QAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHhCCCCH
Confidence            8888888653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.21  E-value=2.6e-10  Score=100.74  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS  159 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~  159 (575)
                      ..+++.+|.++...|++++|+..+...++...           .....+..++.++...|+        ..++.+.|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   76 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV   76 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            45788899999999999999999777654311           111222233333333333        24567789999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++.++|.+|..+|++++|+.+|++++.+.|++.. +.++|.+|..+|++++|+.+|++++...|.+.
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            99999999999999999999999999999999999 99999999999999999999999999988754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=2.1e-11  Score=104.55  Aligned_cols=44  Identities=9%  Similarity=0.024  Sum_probs=25.7

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      ++.++|++..+++++|.+|..+|++++|+.+|++++++.|++..
T Consensus        53 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            44555555555556666666666666666666666655555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.20  E-value=1.5e-10  Score=97.03  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|.+++..+|....+++++|.+|...|++++|+.++...++                    
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------------------   66 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--------------------   66 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh--------------------
Confidence            445566778899999999999999999999999999999999999999999998544322                    


Q ss_pred             hHHHHHHHHhchhhHHhhcCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          137 GVKTKMARSQGKKIQITVEQEK-------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~-------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                                       +.|++       ..+++++|.+|..+|++++|+.+|++++++.|+ .. ...++.++...++
T Consensus        67 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           67 -----------------VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE  127 (131)
T ss_dssp             -----------------HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred             -----------------hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence                             12222       568999999999999999999999999999994 65 7888887765443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.19  E-value=3.3e-10  Score=112.86  Aligned_cols=131  Identities=11%  Similarity=-0.026  Sum_probs=108.5

Q ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc
Q 038048           84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE  155 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~  155 (575)
                      -|....+++.+|..+.+.|++++|+.++..+++.           .+.....+..++.++...|+        ..++..+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            3788889999999999999999999986665443           22333444555566665555        2346668


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      |+....+..++..+..+++.++|+..|+++++++|++.. +++||.+|..+|++++|+..|++++..+|++
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            877778888888899999999999999999999999999 9999999999999999999999999999976

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=3.8e-10  Score=112.62  Aligned_cols=145  Identities=10%  Similarity=0.031  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------CCCH-------HHHHHHHhcCHHHHHHHHHHHHH-hhHHHHHH
Q 038048           71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQ-------LDRS-------DEAIEARSGRIEEEIELLQNKLK-NIEEGIAF  135 (575)
Q Consensus        71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-------qGry-------dEAie~~~gaLeeAi~lL~~~L~-l~~~a~a~  135 (575)
                      ++|+..|++++..+|.++.+|+++|.++..       .|++       ++|+.+           +.+++. ..+.....
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~-----------~~rAl~~~~p~~~~~  101 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI-----------YERAISTLLKKNMLL  101 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-----------HHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH-----------HHHHHHHhCcccHHH
Confidence            789999999999999999999999999874       5876       555555           444444 23444445


Q ss_pred             HhHHHHHHHHhch--------hhHHhhcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Q 038048          136 AGVKTKMARSQGK--------KIQITVEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH-  204 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~-  204 (575)
                      +.+++..+...|+        +.++.+.|.+.. +|.++|.++..+|++++|+..|++|+++.|.... +...|.+... 
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  181 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            5566666665555        456788998886 9999999999999999999999999999998877 6666665433 


Q ss_pred             cCCHHHHHHHHHHHHHHcCCCC
Q 038048          205 MNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       205 qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|++++|+.+|+++++..|++.
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~  203 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcH
Confidence            7999999999999999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=4.4e-11  Score=130.56  Aligned_cols=129  Identities=12%  Similarity=0.090  Sum_probs=105.2

Q ss_pred             HHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      ..+|++++|+.+|+++|++     ++++   ..++++||.+|..+|+|++|+.++.++++....+++..           
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-----------  388 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-----------  388 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----------
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----------
Confidence            4578999999999999974     4444   45799999999999999999999776655433322222           


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHcCC
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----GVDMNK----QCNLAICLMHMNR  207 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----dPdn~~----~~NLA~iy~~qGr  207 (575)
                                        .|+-...++|||.+|..+|+|++|+.+|++||+|     -|+++.    ..+|+.++.++|+
T Consensus       389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence                              3444558999999999999999999999999997     377764    5689999999999


Q ss_pred             HHHHHHHHHHHHHHc
Q 038048          208 VTEAKSLLQAVKISA  222 (575)
Q Consensus       208 ~eEAi~lLekALel~  222 (575)
                      +++|+.+|.++.+..
T Consensus       451 ~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          451 FRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=6.8e-10  Score=105.60  Aligned_cols=151  Identities=11%  Similarity=0.000  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC----CHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD----RSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG----rydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      ..+...+.++...+++++|+.+|+++++.  .++.++++||.+|.. +    ++++|+.++..+.+...           
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~-----------   84 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGS-----------   84 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCC-----------
Confidence            44556777778899999999999999886  468899999999998 7    89999999766543210           


Q ss_pred             HHHHHHhHHHHHHHH----hch--------hhHHhhcC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 038048          131 EGIAFAGVKTKMARS----QGK--------KIQITVEQ--EKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDM  192 (575)
Q Consensus       131 ~a~a~~~nla~al~s----qg~--------k~aL~L~P--d~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn  192 (575)
                        .....+++.++..    .++        +.++...+  +.+.++++||.+|..    .+++++|+.+|++|+++ |.+
T Consensus        85 --~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           85 --KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             --HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             --HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence              1112233333321    111        12334444  237899999999999    89999999999999999 666


Q ss_pred             HH-HHHHHHHHHHc-C-----CHHHHHHHHHHHHHHc
Q 038048          193 NK-QCNLAICLMHM-N-----RVTEAKSLLQAVKISA  222 (575)
Q Consensus       193 ~~-~~NLA~iy~~q-G-----r~eEAi~lLekALel~  222 (575)
                      .. +++||.+|... |     ++++|+.+|+++++..
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77 99999999875 3     8999999999999873

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.16  E-value=2.2e-10  Score=119.75  Aligned_cols=81  Identities=9%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             HHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          134 AFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       134 a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                      ..+.+++.++...++        ..++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+|+.++..
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445566666666555        4578889999999999999999999999999999999999999999 9999999999


Q ss_pred             cCCHHHHHHH
Q 038048          205 MNRVTEAKSL  214 (575)
Q Consensus       205 qGr~eEAi~l  214 (575)
                      ++++++|...
T Consensus       354 ~~~~~~a~k~  363 (370)
T 1ihg_A          354 IKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.16  E-value=9.9e-10  Score=112.12  Aligned_cols=157  Identities=11%  Similarity=0.045  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDR-------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~-------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      .+...+.++...++++.|+.+|.+|+...+.       ...++++||.+|..+|++++|++++..+++.....-     .
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~  217 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-----N  217 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----C
Confidence            3445666778899999999999999986332       245789999999999999999999777665432210     0


Q ss_pred             hHHHHHHHhHHHHHHHHhch--------hhHHh-----hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 038048          129 IEEGIAFAGVKTKMARSQGK--------KIQIT-----VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD----  191 (575)
Q Consensus       129 ~~~a~a~~~nla~al~sqg~--------k~aL~-----L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd----  191 (575)
                      .......+.+++.++...|+        ..++.     .+|....++++||.+|..+|++++|+.+|++++++.+.    
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  297 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK  297 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            01111344566666666555        22344     46777889999999999999999999999999998543    


Q ss_pred             -CHH-HHHHHHHHHHcCC---HHHHHHHHHH
Q 038048          192 -MNK-QCNLAICLMHMNR---VTEAKSLLQA  217 (575)
Q Consensus       192 -n~~-~~NLA~iy~~qGr---~eEAi~lLek  217 (575)
                       ... ...|+.+|...|+   +.+|+.++++
T Consensus       298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          298 FYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence             222 4445555555555   5555555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=1.4e-09  Score=107.61  Aligned_cols=132  Identities=12%  Similarity=0.041  Sum_probs=104.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVD------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .....++..+++++|+.+|.+++...+...      ..++.+|.+|..+|++++|+..+..+++.           .   
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~---  145 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----------Q---  145 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-----------C---
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------H---
Confidence            344556788999999999999999877643      34678999999999999999985443210           0   


Q ss_pred             HHHHhHHHHHHHHhchhhHHhh-cC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----H-HHHHHHHH
Q 038048          133 IAFAGVKTKMARSQGKKIQITV-EQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKAL---SLGVDMN----K-QCNLAICL  202 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L-~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkAL---eidPdn~----~-~~NLA~iy  202 (575)
                                         ... ++ ....+++++|.+|..+|+|++|+.+|++|+   +..|++.    . ++|+|.+|
T Consensus       146 -------------------~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          146 -------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             -------------------CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence                               000 11 114589999999999999999999999999   5566653    4 78999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHcC
Q 038048          203 MHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       203 ~~qGr~eEAi~lLekALel~P  223 (575)
                      ..+|++++|+.++++++++.+
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.14  E-value=5.8e-10  Score=103.07  Aligned_cols=97  Identities=18%  Similarity=0.162  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      .++++|.++...|++++|+..+..+                                       ++| +..+++++|.+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a---------------------------------------~~~-~~~~~~~lg~~~   47 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV---------------------------------------QDP-HSRICFNIGCMY   47 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---------------------------------------SSC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH---------------------------------------cCC-ChHHHHHHHHHH
Confidence            5678999999999999999986553                                       223 456999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|.+.
T Consensus        48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999 99999999999999999999999999988764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=8.9e-10  Score=91.73  Aligned_cols=101  Identities=23%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      .+++.+|.+|...|++++|+.++...                                     +...|.+..+++.+|.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~~a~~   44 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKA-------------------------------------LELDPRSAEAWYNLGNA   44 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHH-------------------------------------HHcCCcchhHHHHHHHH
Confidence            46788999999999999999884332                                     34467788899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |...|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.++++++...|.+.
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999998 99999999999999999999999999988653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.11  E-value=3.4e-09  Score=106.90  Aligned_cols=159  Identities=13%  Similarity=0.031  Sum_probs=116.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      +.+.+..+++++|+.++++++...|...     .++.++|.+|...|++++|+.++..++......-.     .......
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~   95 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----WHYALWS   95 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----HHHHHHH
Confidence            3556788999999999999999876542     26889999999999999999997666554332100     0001112


Q ss_pred             HhHHHHHHHHhch--------hhHHhhc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 038048          136 AGVKTKMARSQGK--------KIQITVE--------QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-----NK  194 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~--------Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-----~~  194 (575)
                      ..+++..+...|+        ..++.+.        |....++.++|.+|..+|++++|+.+|++++++.+..     ..
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            2334444444444        1122221        3345688999999999999999999999999998753     23


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          195 -QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       195 -~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                       +.++|.++..+|++++|+.++++++.+.+.
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence             779999999999999999999999988543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.10  E-value=3.8e-10  Score=92.18  Aligned_cols=100  Identities=17%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      +...+..+...+++++|+.+|++++..+|....+++++|.+|..+|++++|+.++..                       
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-----------------------   65 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY-----------------------   65 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHH-----------------------
Confidence            344556677889999999999999999999999999999999999999999988433                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 038048          137 GVKTKMARSQGKKIQITVEQE--KSRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn~  193 (575)
                                    ++.+.|.  ...+++++|.+|..+ |++++|+.+|++++...|++.
T Consensus        66 --------------a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           66 --------------VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             --------------HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             --------------HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence                          2456788  889999999999999 999999999999999999764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.10  E-value=4.8e-10  Score=94.34  Aligned_cols=72  Identities=14%  Similarity=0.065  Sum_probs=67.1

Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+..|++++++.|...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            6889999999999999999999999999999999999999 99999999999999999999999999987543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.09  E-value=7.7e-10  Score=100.73  Aligned_cols=128  Identities=15%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR  144 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~  144 (575)
                      +..|++++|+.+++...........+++.+|.+|...|++++|+.++..+++....                        
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------   58 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK------------------------   58 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------------------------
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH------------------------
Confidence            56789999999655444433356779999999999999999999986554332110                        


Q ss_pred             HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH----H-HHHHHHHHHHcCCHHHHHHHHH
Q 038048          145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL---GVDMN----K-QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei---dPdn~----~-~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                             ....+....+++++|.+|..+|++++|+.+|++++++   .+++.    . ++++|.+|..+|++++|+.+++
T Consensus        59 -------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (203)
T 3gw4_A           59 -------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE  131 (203)
T ss_dssp             -------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                   0112233458999999999999999999999999999   55432    3 7899999999999999999999


Q ss_pred             HHHHHcC
Q 038048          217 AVKISAG  223 (575)
Q Consensus       217 kALel~P  223 (575)
                      +++.+.+
T Consensus       132 ~al~~~~  138 (203)
T 3gw4_A          132 KSLVYAQ  138 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.09  E-value=5.3e-11  Score=128.32  Aligned_cols=101  Identities=19%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      .+++++|.+|.++|++++|++++..                                     ++.++|++..+++++|.+
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------Al~~~p~~~~~~~~lg~~   49 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQ-------------------------------------AIELNPSNAIYYGNRSLA   49 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------------HHHhCCccHHHHHHHHHH
Confidence            4567789999999999999998544                                     245689999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |..+|+|++|+.+|++|++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus        50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999 99999999999999999999999999999876

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=1.4e-09  Score=104.51  Aligned_cols=134  Identities=17%  Similarity=0.190  Sum_probs=97.4

Q ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh--
Q 038048           85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITV--  154 (575)
Q Consensus        85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L--  154 (575)
                      |....+++.+|.+|...|++++|+.++..+++......+.   ........+..++..+...|+        ..++.+  
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH---DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4456688899999999999999999976665543222100   011112233444444444444        122333  


Q ss_pred             ------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          155 ------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG--------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       155 ------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid--------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekAL  219 (575)
                            .+....+++++|.+|..+|++++|+.+|++++++.        |.... +.++|.+|..+|++++|+.+|++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  35556799999999999999999999999999985        44444 8899999999999999999999999


Q ss_pred             HH
Q 038048          220 IS  221 (575)
Q Consensus       220 el  221 (575)
                      .+
T Consensus       181 ~~  182 (311)
T 3nf1_A          181 EI  182 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            98

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.08  E-value=7e-11  Score=121.24  Aligned_cols=119  Identities=13%  Similarity=0.062  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ...++.+|.+|...|+|++|+.+|..++........  ..       ..++...+...      +     ...+++++|.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~-------~~~~~~~~~~~------l-----~~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--FQ-------LYGKYQDMALA------V-----KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--HT-------CCHHHHHHHHH------H-----HTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--hh-------hcccHHHHHHH------H-----HHHHHHHHHH
Confidence            457889999999999999999997665543211110  00       00000000000      0     1238999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999999999 99999999999999999999999999999765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.07  E-value=9.5e-10  Score=93.25  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++.+.|..
T Consensus        11 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            46779999999999999999999999999999999999999999 9999999999999999999999999998854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.07  E-value=5.3e-11  Score=98.54  Aligned_cols=66  Identities=14%  Similarity=0.102  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+++++|.++..+|+|++|+.+|++|++++|++.. ++++|.+|..+|++++|+..|++++.++|++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35555666666666666666666666666666655 5666666666666666666666666665554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=1e-09  Score=108.45  Aligned_cols=131  Identities=11%  Similarity=0.021  Sum_probs=101.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDS------ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~------Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      ....+..+++++|+.+|++++...+....      .++.+|.++...|++++|+.++..+++.           .     
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-----------~-----  145 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----------Q-----  145 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-----------C-----
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----------h-----
Confidence            34567789999999999999987765543      3456999999999999999985543220           0     


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----H-HHHHHHHHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQE---KSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMN----K-QCNLAICLM  203 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd---~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~----~-~~NLA~iy~  203 (575)
                                        .-.++   ...++++||.+|..+|+|++|+.+|++|+++.   |.+.    . ++|+|.+|.
T Consensus       146 ------------------~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          146 ------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             ------------------CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence                              00111   13479999999999999999999999999642   1222    2 789999999


Q ss_pred             HcCCHHHHHHHHHHHHHHcCCC
Q 038048          204 HMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+|++++|+.++++++++.+..
T Consensus       208 ~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          208 LDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999987643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=9.1e-10  Score=112.54  Aligned_cols=124  Identities=17%  Similarity=0.023  Sum_probs=106.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ..+...+++++|...|..++..+|... +++.+|.++.+.++|++|+.++....                          
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~--------------------------  162 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG--------------------------  162 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG--------------------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh--------------------------
Confidence            445678999999999999998899888 99999999999999999999865421                          


Q ss_pred             HHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHH-HHHHHHHHHHcCCHHHHHHH
Q 038048          142 MARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLG--VD-MNK-QCNLAICLMHMNRVTEAKSL  214 (575)
Q Consensus       142 al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pd-n~~-~~NLA~iy~~qGr~eEAi~l  214 (575)
                                 . .+++   ..++++||.++..+|++++|+.+|++++...  |. ... ++++|.++..+|+.++|..+
T Consensus       163 -----------~-~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~  230 (282)
T 4f3v_A          163 -----------K-WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL  230 (282)
T ss_dssp             -----------G-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -----------c-cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence                       1 1122   3489999999999999999999999999655  66 445 99999999999999999999


Q ss_pred             HHHHHHHcCC
Q 038048          215 LQAVKISAGN  224 (575)
Q Consensus       215 LekALel~P~  224 (575)
                      |++++..+|+
T Consensus       231 l~~a~a~~P~  240 (282)
T 4f3v_A          231 LEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHhcCCc
Confidence            9999999995

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.05  E-value=1.2e-09  Score=100.05  Aligned_cols=126  Identities=16%  Similarity=0.013  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSR  160 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~  160 (575)
                      ..++.+|.++...|++++|+..+..+++....           ....+..++.++...|+        +.++.++| ++.
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-----------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence            45778999999999999999998887765432           22334444555555555        23466678 666


Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAY-MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY-~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+..++.+. ...+...+|+..|+++++++|++.. +++||.+|..+|++++|+..|+++++.+|+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  142 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ  142 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence            666666443 3444556789999999999999999 99999999999999999999999999998653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.05  E-value=1.9e-09  Score=97.60  Aligned_cols=111  Identities=15%  Similarity=0.163  Sum_probs=97.3

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHCCCH--HHHHHHHhcCHHHHHHHHH
Q 038048           47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVV-MKQLDRS--DEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~i-y~qqGry--dEAie~~~gaLeeAi~lL~  123 (575)
                      +...|.....+...+.++...+++++|+.+|++++..+|.+..+++++|.+ |...|++  ++|+.++..          
T Consensus        37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~----------  106 (177)
T 2e2e_A           37 IRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK----------  106 (177)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH----------
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH----------
Confidence            344555556667777888999999999999999999999999999999999 8899999  999988433          


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                                 ++.++|++..+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus       107 ---------------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          107 ---------------------------ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             ---------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             ---------------------------HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence                                       24568999999999999999999999999999999999999865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.03  E-value=1.6e-09  Score=108.36  Aligned_cols=130  Identities=13%  Similarity=0.059  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcC------
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQ------  156 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~P------  156 (575)
                      +...|.+|..+|++++|+.++..+++.....     .........+.+++.++...|+        ..++.+.+      
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~  113 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD  113 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3345789999999999999977766543221     1111122345566666665554        22333321      


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ....++.++|.+|.. |++++|+.+|++|+++.|..      .. +.++|.+|..+|++++|+.+|++++.+.+++.
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            124589999999999 99999999999999998754      23 78999999999999999999999999987653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.03  E-value=4.7e-09  Score=113.56  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.....+...+..+...+++++|+.+|+++++.+|++..++++||.+|..+|++++|++++..                
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------  116 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR----------------  116 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Confidence            3444455666778888999999999999999999999999999999999999999999998543                


Q ss_pred             HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                           ++.++|++..++.++|.+|..+   |++++|+.+|+++++++|++.. +..|+
T Consensus       117 ---------------------al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          117 ---------------------AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             ---------------------HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             ---------------------HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence                                 2456899999999999999999   9999999999999999999987 77766

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.02  E-value=1.3e-09  Score=92.31  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhH
Q 038048           72 RAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQ  151 (575)
Q Consensus        72 eAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~a  151 (575)
                      .|+..|++++..+|.+..++++||.+|...|++++|+.++..                                     +
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------a   45 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA-------------------------------------A   45 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------H
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------------------------H
Confidence            588999999999999999999999999999999999998543                                     2


Q ss_pred             HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcC
Q 038048          152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMN  206 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qG  206 (575)
                      +.++|++..++++||.+|..+|++++|+.+|++++++.|++..   ...+..++...|
T Consensus        46 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           46 LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999885442   445555444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.02  E-value=1.7e-09  Score=102.96  Aligned_cols=131  Identities=8%  Similarity=-0.121  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS  159 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~  159 (575)
                      +.+++++|..+...|++++|+..+...++....        .......+..++.++...|+        ...+.+.|++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            567899999999999999999996654432110        00011223344444444444        34566778765


Q ss_pred             H---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHH-H-----------------HHHHH
Q 038048          160 R---ILGNLAWAYMQ------------------QNNFEMAEQYYRKALSLGVDMNK-Q-----------------CNLAI  200 (575)
Q Consensus       160 ~---a~~nLG~aY~~------------------qGryeEAe~~yrkALeidPdn~~-~-----------------~NLA~  200 (575)
                      .   +++.+|.+|..                  +|++++|+..|+++++.+|++.. .                 +.+|.
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~  155 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE  155 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   88999988876                  67999999999999999999874 2                 57899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          201 CLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       201 iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|++++|+..|+++++..|++.
T Consensus       156 ~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          156 YYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            99999999999999999999999754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.00  E-value=8e-09  Score=110.58  Aligned_cols=150  Identities=14%  Similarity=0.019  Sum_probs=115.1

Q ss_pred             cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           67 DKDPS-------RAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        67 ~kd~e-------eAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      .|+++       +|+..|++|++ ..|++..++..+|.++...|++++|+.++.++++......          ...+.+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~  361 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP----------TLVYIQ  361 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH----------HHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc----------hHHHHH
Confidence            58876       99999999997 7999999999999999999999999999776654211000          011222


Q ss_pred             HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048          139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWA-YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV  208 (575)
Q Consensus       139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a-Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~  208 (575)
                      ++..+...|+        ..++...|.....+...+.+ +..+|++++|..+|+++|++.|+++. +.++|.++..+|++
T Consensus       362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence            2222222222        23556667666666666655 45799999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 038048          209 TEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       209 eEAi~lLekALel~P~n~  226 (575)
                      ++|..+|++++...|.++
T Consensus       442 ~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          442 NNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHHHHHHHHHHSCCSCG
T ss_pred             hhHHHHHHHHHhccCCCH
Confidence            999999999999876554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=2.6e-09  Score=85.30  Aligned_cols=67  Identities=27%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ..+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            345555555555555555555555555555555555 5555555555555555555555555555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=1.7e-09  Score=102.89  Aligned_cols=136  Identities=10%  Similarity=-0.071  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc---
Q 038048           71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG---  147 (575)
Q Consensus        71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg---  147 (575)
                      .+|+.+|+++.+.  .++.++++||.+|...+++++|+.++..+.+...             .....+++.++...|   
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-------------~~a~~~lg~~y~~~g~~~   67 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-------------GDALALLAQLKIRNPQQA   67 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHTTSSTTSC
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcCCCCC
Confidence            4688999999886  5688999999999999999999999776544210             112223333333211   


Q ss_pred             h------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHH----cCCHHH
Q 038048          148 K------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMH----MNRVTE  210 (575)
Q Consensus       148 ~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~----qGr~eE  210 (575)
                      +      -+...+++.++.++++||.+|..    .+++++|+.+|++|++..|.  ++. +++||.+|..    .+++++
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            1      11233578889999999999998    99999999999999999984  567 9999999999    999999


Q ss_pred             HHHHHHHHHHH
Q 038048          211 AKSLLQAVKIS  221 (575)
Q Consensus       211 Ai~lLekALel  221 (575)
                      |+.+|+++++.
T Consensus       148 A~~~~~~A~~~  158 (212)
T 3rjv_A          148 ASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999999997

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=3e-08  Score=101.97  Aligned_cols=148  Identities=7%  Similarity=0.043  Sum_probs=110.4

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH--
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD--RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA--  143 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG--rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al--  143 (575)
                      ...++|+.++.++|.++|++..+++..+.++..+|  ++++|+.+....+....+           ....+.....++  
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----------~y~aW~~R~~iL~~  115 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----------NYQIWNYRQLIIGQ  115 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----------CCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----------cHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999  999999885444332211           111111111111  


Q ss_pred             --HHh---ch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          144 --RSQ---GK--------KIQITVEQEKSRILGNLAWAYMQQNNFE--MAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       144 --~sq---g~--------k~aL~L~Pd~~~a~~nLG~aY~~qGrye--EAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                        ...   ++        ..++..+|.+..+|++.++++..+|+++  +++.++.++++++|.|.. +.+.+.++...|+
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              111   11        3456778888888888888888888888  888888888888888888 8888888888887


Q ss_pred             ------HHHHHHHHHHHHHHcCCCC
Q 038048          208 ------VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       208 ------~eEAi~lLekALel~P~n~  226 (575)
                            +++++.++++++..+|+|.
T Consensus       196 ~~~~~~~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          196 LATDNTIDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             cchhhhHHHHHHHHHHHHHhCCCCc
Confidence                  8888888888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.93  E-value=2.9e-09  Score=117.75  Aligned_cols=156  Identities=6%  Similarity=-0.026  Sum_probs=105.1

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR----------SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr----------ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      -.++|+.++.++|..+|++..+|+..+.++...|+          +++|++.+..                         
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~-------------------------   98 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES-------------------------   98 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHH-------------------------
Confidence            45789999999999999999999999999999988          5666655322                         


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-CHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQN--NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-RVTEAKSL  214 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG--ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-r~eEAi~l  214 (575)
                                  ++..+|++..+|++.++++..+|  ++++|+.++.++++++|.|.. |.+.+.++...| .+++|+++
T Consensus        99 ------------~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           99 ------------CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             ------------HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ------------HHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence                        24456677777777777777777  557777777777777777776 667777777777 67777777


Q ss_pred             HHHHHHHcCCCCCChh----HHHHH--------------HHHHHHHHHhccccccCcccccccch
Q 038048          215 LQAVKISAGNRQMDTS----YSRSF--------------ERAIQMLTELESPSVLKLTELEVGDD  261 (575)
Q Consensus       215 LekALel~P~n~~~~~----~l~sl--------------erA~elL~ele~al~~~p~~~e~~~~  261 (575)
                      ++++++.+|.+..+-.    .+..+              ++..+.+..+..++..+|..+..|.-
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence            7777776666532110    11111              33455555555566666666655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.93  E-value=5.7e-09  Score=86.12  Aligned_cols=82  Identities=17%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHH
Q 038048          136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAI  200 (575)
Q Consensus       136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~  200 (575)
                      +.+++..+...|+        ..++.++|++..+++++|.+|..+|++++|+.+|+++++++|++      .. ++++|.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~   86 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL   86 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence            4455555555555        45688899999999999999999999999999999999999999      77 889999


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 038048          201 CLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       201 iy~~qGr~eEAi~lLek  217 (575)
                      ++..+|++++|+..+++
T Consensus        87 ~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           87 AQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHhHhhhHhHHHH
Confidence            99999988888776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.2e-08  Score=101.14  Aligned_cols=159  Identities=11%  Similarity=0.107  Sum_probs=112.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH---
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-----------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL---  121 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-----------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l---  121 (575)
                      ...+..|++++|+..|.+++...+..                 ..++.+||.+|..+|++++|++++...+.....+   
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            44577899999999999999987653                 2468999999999999999999977766543211   


Q ss_pred             -----HHHHHHhh-------HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          122 -----LQNKLKNI-------EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       122 -----L~~~L~l~-------~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                           +...+..+       .....++.........      .........++.+||.+|..+|+|++|+.++++++...
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR------EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH------SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence                 11111110       0111111111111111      11133446799999999999999999999999999862


Q ss_pred             ------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          190 ------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       190 ------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                            +.... +.++|.+|..+|++++|..+|++++.+.+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence                  22334 78999999999999999999999999876443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.89  E-value=9.1e-09  Score=82.06  Aligned_cols=72  Identities=22%  Similarity=0.258  Sum_probs=61.3

Q ss_pred             HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                      .+..++..+...++        ..++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+||.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            34455555555555        3567889999999999999999999999999999999999999999 99999999876


Q ss_pred             C
Q 038048          206 N  206 (575)
Q Consensus       206 G  206 (575)
                      |
T Consensus        91 g   91 (91)
T 1na3_A           91 G   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.88  E-value=1.8e-09  Score=117.77  Aligned_cols=106  Identities=8%  Similarity=0.028  Sum_probs=82.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                      ...+..+..+|+|++|+.++.++++....+++..                             +|+-..+++|||.+|..
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-----------------------------Hp~~a~~~~nLa~~y~~  363 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-----------------------------NLYVLRLLSIASEVLSY  363 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-----------------------------SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-----------------------------CHHHHHHHHHHHHHHHH
Confidence            3455668889999999998766544322222111                             33345589999999999


Q ss_pred             cCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          172 QNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       172 qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|+|++|+.+|+++|++.     |+++.    ++|||.+|..+|++++|+.+|++|+++.....
T Consensus       364 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          364 LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999973     56554    78999999999999999999999999876544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.88  E-value=2.2e-08  Score=107.22  Aligned_cols=152  Identities=9%  Similarity=0.024  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------CCCHHHHHHHHhcCHHHHHHHHHHHHH-hhHHHHHHHhHHHHH
Q 038048           71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQ-------LDRSDEAIEARSGRIEEEIELLQNKLK-NIEEGIAFAGVKTKM  142 (575)
Q Consensus        71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-------qGrydEAie~~~gaLeeAi~lL~~~L~-l~~~a~a~~~nla~a  142 (575)
                      ..|+..|++++...|.++.+|+++|..+.+       .|+++.|...    .+++..++..++. ..+.....+..++..
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~----~~~A~~~~~~Al~~~~p~~~~l~~~~~~~  330 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF----SDEAANIYERAISTLLKKNMLLYFAYADY  330 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH----HHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh----hHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            478899999999999999999999999987       7998833211    1223333344432 233333444455555


Q ss_pred             HHHhch--------hhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH-HHHcCCHHHH
Q 038048          143 ARSQGK--------KIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC-LMHMNRVTEA  211 (575)
Q Consensus       143 l~sqg~--------k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i-y~~qGr~eEA  211 (575)
                      +...|+        +.++.+.|.+. .+|.++|.++..+|++++|..+|++|++..|.... +...|.+ +..+|++++|
T Consensus       331 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          331 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHH
Confidence            554444        34567777764 58888888888888888888888888888887666 5555544 4468888888


Q ss_pred             HHHHHHHHHHcCCCC
Q 038048          212 KSLLQAVKISAGNRQ  226 (575)
Q Consensus       212 i~lLekALel~P~n~  226 (575)
                      ..+|+++++..|++.
T Consensus       411 ~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          411 FKIFELGLKKYGDIP  425 (530)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHCCCCH
Confidence            888888888888654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.88  E-value=1.6e-08  Score=86.79  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..++..+|.+|...|++++|+.++..+++.....-.                               ......++.++|.
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~   57 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------------KAAERIAYSNLGN   57 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------------------------chHHHHHHHHHHH
Confidence            357889999999999999999996554432211000                               0011248899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      +|..+|++++|+.+|++++++.+..      .. ++++|.+|..+|++++|+.++++++.+.+.
T Consensus        58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986543      33 779999999999999999999999998653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.87  E-value=7.3e-08  Score=102.11  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             cCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHcCC
Q 038048          155 EQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLekALel~P~  224 (575)
                      +..++.++++||.+|..    .+++++|+.+|++|++..  ++. +++||.+|..    .+++++|+.+|+++++..|+
T Consensus       359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            44778899999999999    999999999999999864  577 9999999999    99999999999999999853

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.86  E-value=1.1e-07  Score=95.67  Aligned_cols=58  Identities=17%  Similarity=0.004  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAG--------DRVDSALKDMAVVMKQLDRSDEAIEARSGRIE  116 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~--------p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe  116 (575)
                      ..+.++...|++++|+.+|++++...        +....++.++|.+|..+|++++|+.++...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  163 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34556677899999999999998764        33456788899999999999999998655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.84  E-value=4.5e-09  Score=86.28  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=34.5

Q ss_pred             hcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          154 VEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       154 L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++|++.. +++++|.+|..+|++++|+.+|+++++++|++.. +.+        +.+.+|+.+|++++..+|++
T Consensus        29 ~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            3555555 5555555555555555555555555555555554 322        44555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.84  E-value=2.1e-08  Score=111.01  Aligned_cols=120  Identities=8%  Similarity=0.039  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD--RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG--rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +++|+.+|.+++..+|++..+|++.+.++.+.|  ++++|++.+.+                                  
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k----------------------------------  134 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR----------------------------------  134 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH----------------------------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHH----------------------------------
Confidence            899999999999999999999999999999999  66998887433                                  


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc--------------CCHHHH
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQN-NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM--------------NRVTEA  211 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~qG-ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q--------------Gr~eEA  211 (575)
                         ++.++|.+..+|++.++++..+| .+++|++++.++++++|+|.. |++++.++..+              +++++|
T Consensus       135 ---~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee  211 (567)
T 1dce_A          135 ---FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (567)
T ss_dssp             ---HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             ---HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence               35679999999999999999999 999999999999999999999 99999999885              678999


Q ss_pred             HHHHHHHHHHcCCCC
Q 038048          212 KSLLQAVKISAGNRQ  226 (575)
Q Consensus       212 i~lLekALel~P~n~  226 (575)
                      ++++.+++.++|++.
T Consensus       212 l~~~~~ai~~~P~~~  226 (567)
T 1dce_A          212 LELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHhhCCCCc
Confidence            999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.83  E-value=3e-08  Score=88.86  Aligned_cols=110  Identities=16%  Similarity=0.134  Sum_probs=95.0

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .+|+++|+.+|+++.+.+...  +.  ||.+|...+.+++|+.++..+                                
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~A--------------------------------   51 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKA--------------------------------   51 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHH--------------------------------
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHH--------------------------------
Confidence            357899999999999987543  44  999999999999988875442                                


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHH
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQA  217 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLek  217 (575)
                             .+..++.++++||.+|..    .+++++|+.+|++|.+.  .++. .++||.+|..    .+++++|+.+|++
T Consensus        52 -------a~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~  122 (138)
T 1klx_A           52 -------CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  122 (138)
T ss_dssp             -------HHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             -------HcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence                   123567799999999999    99999999999999987  6777 9999999999    9999999999999


Q ss_pred             HHHH
Q 038048          218 VKIS  221 (575)
Q Consensus       218 ALel  221 (575)
                      +.+.
T Consensus       123 Aa~~  126 (138)
T 1klx_A          123 ACRL  126 (138)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9986

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.83  E-value=1.5e-07  Score=99.65  Aligned_cols=149  Identities=13%  Similarity=0.047  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048           56 PYVRAKHIQLI----DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLK  127 (575)
Q Consensus        56 ~yarA~~l~l~----~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~  127 (575)
                      .+...+..+..    .+++++|+.+|+++++.  ++..+++.||.+|..    .+++++|+.++..+.+...        
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------  110 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL--------  110 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--------
Confidence            44455566666    78999999999999987  467899999999999    9999999999766543210        


Q ss_pred             hhHHHHHHHhHHHHHHHH----hch------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 038048          128 NIEEGIAFAGVKTKMARS----QGK------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       128 l~~~a~a~~~nla~al~s----qg~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~  193 (575)
                           .....+++.++..    .++      .....++..+..++++||.+|..    .+++++|+.+|++|++.  ++.
T Consensus       111 -----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~  183 (490)
T 2xm6_A          111 -----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV  183 (490)
T ss_dssp             -----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             -----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence                 0111122222222    111      01122345667778888888877    77888888888888775  456


Q ss_pred             H-HHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 038048          194 K-QCNLAICLMH----MNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       194 ~-~~NLA~iy~~----qGr~eEAi~lLekALel  221 (575)
                      . +++||.+|..    .+++++|+.+|+++++.
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence            6 7788888877    78888888888877764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=1.9e-07  Score=98.00  Aligned_cols=149  Identities=6%  Similarity=-0.010  Sum_probs=114.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .+..++|+.++.++|.++|++..+++..+.++...| .+++++......+..           .+.....+.....++..
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----------nPKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----------NLKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHHH
Confidence            345578999999999999999999999999999999 488888875443332           12222222222222222


Q ss_pred             h-c-h--------hhHHhhcCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048          146 Q-G-K--------KIQITVEQEKSRILGNLAWAYMQQNNFE--------MAEQYYRKALSLGVDMNK-QCNLAICLMHMN  206 (575)
Q Consensus       146 q-g-~--------k~aL~L~Pd~~~a~~nLG~aY~~qGrye--------EAe~~yrkALeidPdn~~-~~NLA~iy~~qG  206 (575)
                      . + .        ..++..+|.+..+|++.++++...|.++        ++++++.++++++|.|.. +++.+.++...+
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            2 1 1        3457778999999999999999888888        899999999999999998 999999998888


Q ss_pred             C-------HHHHHHHHHHHHHHcCCCC
Q 038048          207 R-------VTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       207 r-------~eEAi~lLekALel~P~n~  226 (575)
                      +       +++++.++++++.++|+|.
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~P~n~  242 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLIPHNV  242 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            7       7899999999999988764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.80  E-value=2.6e-07  Score=95.52  Aligned_cols=162  Identities=12%  Similarity=-0.043  Sum_probs=113.1

Q ss_pred             CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-------HHH--
Q 038048           54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGD--RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-------ELL--  122 (575)
Q Consensus        54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p--~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-------~lL--  122 (575)
                      ...+..++.++...|++++|+.++.+.|..+|  ...+++..++.+|+.+|+++.|.+.+....+...       .++  
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            44445677778889999999999999999987  7888999999999999999999998533211110       000  


Q ss_pred             --HHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------
Q 038048          123 --QNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSL----------  188 (575)
Q Consensus       123 --~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALei----------  188 (575)
                        ...+.+...+    .+...++.-.  ..+....|+  ....+++   +++.+|++++|+..++.++++          
T Consensus       180 Laea~v~l~~g~----~~~q~A~~~f--~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~  250 (310)
T 3mv2_B          180 LAESYIKFATNK----ETATSNFYYY--EELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA  250 (310)
T ss_dssp             HHHHHHHHHHTC----STTTHHHHHH--HHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred             HHHHHHHHHhCC----ccHHHHHHHH--HHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence              0000000000    0011111100  112333454  2334444   899999999999999988887          


Q ss_pred             CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          189 GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       189 dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|+++. ..|++.+...+|+  +|.++++++.+.+|+++
T Consensus       251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            488988 8899999999998  99999999999999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.78  E-value=2.4e-07  Score=96.49  Aligned_cols=157  Identities=10%  Similarity=0.045  Sum_probs=118.5

Q ss_pred             HcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH---HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048           66 IDKDP-SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRS---DEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK  141 (575)
Q Consensus        66 ~~kd~-eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGry---dEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~  141 (575)
                      ..+++ ++|+.++.++|..+|++..+++..+.++...++.   ++..    ..+++++..+...+...+.....+....-
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~----~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA----ALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhh----HHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34554 5899999999999999999999999999887762   1111    11333444444444433333444444444


Q ss_pred             HHHHhch----------hhHHhhcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc----
Q 038048          142 MARSQGK----------KIQITVEQEKSRILGNLAWAYMQQNN-FEMAEQYYRKALSLGVDMNK-QCNLAICLMHM----  205 (575)
Q Consensus       142 al~sqg~----------k~aL~L~Pd~~~a~~nLG~aY~~qGr-yeEAe~~yrkALeidPdn~~-~~NLA~iy~~q----  205 (575)
                      ++...+.          ..++.++|.+..+|++.++++...|. ++++++++.++++++|.|.. +++++.++...    
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            4443331          34678899999999999999999999 69999999999999999999 99999998887    


Q ss_pred             ----------CCHHHHHHHHHHHHHHcCCCC
Q 038048          206 ----------NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       206 ----------Gr~eEAi~lLekALel~P~n~  226 (575)
                                +.+++++.++.+++.++|+|.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence                      568999999999999999874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.78  E-value=4.5e-09  Score=113.03  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=61.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +-..+++|||.+|..+|+|++|+.+|+++|++.     |+++.    ++|||.+|..+|++++|+.+|++|+++.....
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            334589999999999999999999999999873     55553    88999999999999999999999999876544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.77  E-value=1.6e-07  Score=99.30  Aligned_cols=142  Identities=13%  Similarity=0.049  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048           56 PYVRAKHIQLIDK---DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~k---d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a  132 (575)
                      .|.++.. ++...   +..+|+.+|++|++++|++..++..++.+|..       ...+...-......+...+      
T Consensus       199 l~Lra~~-~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------~~~~~~~~~~~~~~l~~a~------  264 (372)
T 3ly7_A          199 NFYQAHD-YLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------RHSQHPLDEKQLAALNTEI------  264 (372)
T ss_dssp             HHHHHHH-HHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HHHHSCCCHHHHHHHHHHH------
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HhccCCCchhhHHHHHHHH------
Confidence            3344533 34443   45889999999999999999999999998872       1111100000001111110      


Q ss_pred             HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Q 038048          133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAK  212 (575)
Q Consensus       133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi  212 (575)
                                 .   ...++.++|.++.++.-+|.++...|++++|+..+++|++++|+...+..+|.++...|++++|+
T Consensus       265 -----------~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~  330 (372)
T 3ly7_A          265 -----------D---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA  330 (372)
T ss_dssp             -----------H---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -----------H---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                       0   01235668999999999999999999999999999999999986333888999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 038048          213 SLLQAVKISAGNR  225 (575)
Q Consensus       213 ~lLekALel~P~n  225 (575)
                      +.|++|+.++|..
T Consensus       331 e~~~~AlrL~P~~  343 (372)
T 3ly7_A          331 DAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHSCSH
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999999953

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.76  E-value=9.9e-09  Score=86.20  Aligned_cols=85  Identities=9%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH
Q 038048           83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL  162 (575)
Q Consensus        83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~  162 (575)
                      .+|++..++++||.+|..+|++++|+.++..                                     ++.++|++..++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~a~   44 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEE-------------------------------------LVETDPDYVGTY   44 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCTHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCcHHHH
Confidence            3688899999999999999999999998543                                     356789999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMH  204 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~  204 (575)
                      ++||.+|..+|++++|+.+|++++++.|.+..   ...+..++..
T Consensus        45 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           45 YHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence            99999999999999999999999999775433   3344444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=5.3e-08  Score=82.86  Aligned_cols=86  Identities=14%  Similarity=-0.024  Sum_probs=73.0

Q ss_pred             cCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChh
Q 038048          155 EQEKSRILGNLAWAYMQQNN---FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTS  230 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGr---yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~  230 (575)
                      +|+++.++..+|.+++..++   .++|..+|++||+++|++.. .+.||.++..+|+|++|+.+++++++.+|.+++...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~   81 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT   81 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            58889999999999987766   79999999999999999999 999999999999999999999999999998543223


Q ss_pred             HHHHHHHHHH
Q 038048          231 YSRSFERAIQ  240 (575)
Q Consensus       231 ~l~slerA~e  240 (575)
                      ....+.+|+.
T Consensus        82 i~~~I~~A~~   91 (93)
T 3bee_A           82 IIESINKAKK   91 (93)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            3344444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.73  E-value=7e-08  Score=79.04  Aligned_cols=87  Identities=10%  Similarity=-0.046  Sum_probs=70.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 038048          163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQ  240 (575)
Q Consensus       163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~e  240 (575)
                      +++|.+|..+|++++|+.+|+++++++|++..  ++++|.+|..+|++++|+.+|+++++++|++..  .+  ......+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~--~~~~~~~   79 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQ--ARKMVMD   79 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HH--HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HH--HHHHHHH
Confidence            67899999999999999999999999999976  789999999999999999999999999997651  11  1134445


Q ss_pred             HHHHhccccccCc
Q 038048          241 MLTELESPSVLKL  253 (575)
Q Consensus       241 lL~ele~al~~~p  253 (575)
                      ++..++......|
T Consensus        80 a~~~~~~~~~~~p   92 (99)
T 2kc7_A           80 ILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHHHCCTTHHHH
T ss_pred             HHHHHHHHhccCc
Confidence            5555555554433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.72  E-value=3.8e-09  Score=107.96  Aligned_cols=191  Identities=14%  Similarity=0.057  Sum_probs=131.1

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh--H------
Q 038048           66 IDKDPSRAVSLFWAAINAGDRVDSALKDM-------AVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI--E------  130 (575)
Q Consensus        66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nL-------A~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~--~------  130 (575)
                      ..+|+..|+..|.++++.+|...++|.++       +.++...+++.+++..++++++.....+...+.+.  +      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            57899999999999999999999999999       89999999999999887777664332222111100  0      


Q ss_pred             --HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-HH-HHH
Q 038048          131 --EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-M-NK-QCN  197 (575)
Q Consensus       131 --~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd-n-~~-~~N  197 (575)
                        ..-.+...++.++...|+        ...+...|++. +++.+|.++++.++|++|+.+|++++...+. . .. +++
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence              000111122233333333        11233477777 9999999999999999999999988776422 2 23 899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHcCCCCC--Ch------hHHHHHHHHHHHHHHhccccccCccccccc
Q 038048          198 LAICLMHMNRVTEAKSLLQAVKISAGNRQM--DT------SYSRSFERAIQMLTELESPSVLKLTELEVG  259 (575)
Q Consensus       198 LA~iy~~qGr~eEAi~lLekALel~P~n~~--~~------~~l~slerA~elL~ele~al~~~p~~~e~~  259 (575)
                      ||.++..+|++++|+.+|++++... .++.  .+      ..+..+++..++...++......|. .+..
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            9999999999999999999998532 2121  11      1234445556666666666667776 4433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.68  E-value=2.7e-08  Score=106.93  Aligned_cols=99  Identities=15%  Similarity=0.068  Sum_probs=78.5

Q ss_pred             cCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           67 DKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      .|++++|+.+|+++|++     +|++   ..++++||.+|..+|+|++|+.++.++++....+++..             
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------------  377 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------------  377 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------------
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------------
Confidence            46899999999999974     5554   45799999999999999999999777655333222221             


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK  194 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~  194 (575)
                                      .|+-...++|||.+|..+|+|++|+.+|++||+|.     |+++.
T Consensus       378 ----------------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          378 ----------------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             ----------------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                            33445589999999999999999999999999974     77764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.67  E-value=3.8e-07  Score=96.90  Aligned_cols=148  Identities=13%  Similarity=0.030  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           56 PYVRAKHIQLIDK---DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL----DRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        56 ~yarA~~l~l~~k---d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq----GrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      .+...+.++...+   ++++|+.+|++++..++....++++||.+|...    +++++|+.++..+. .           
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-----------  245 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-----------  245 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-----------
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-----------
Confidence            5555666666677   788888888888888888777778888888665    68888887755543 1           


Q ss_pred             hHHHHHHHhHHHHHHH---Hhch------hhHHhhcCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHH
Q 038048          129 IEEGIAFAGVKTKMAR---SQGK------KIQITVEQEKSRILGNLAWAYMQQN-----NFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       129 ~~~a~a~~~nla~al~---sqg~------k~aL~L~Pd~~~a~~nLG~aY~~qG-----ryeEAe~~yrkALeidPdn~~  194 (575)
                        .......+++.++.   ..++      -+...++..++.++++||.+|. .|     ++++|+.+|++|.   ++++.
T Consensus       246 --g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~  319 (452)
T 3e4b_A          246 --GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA  319 (452)
T ss_dssp             --GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred             --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence              01111222222211   1111      0112335567777888887777 55     7888888888877   77777


Q ss_pred             -HHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 038048          195 -QCNLAICLMH----MNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       195 -~~NLA~iy~~----qGr~eEAi~lLekALel  221 (575)
                       +++||.+|..    ..++++|+.+|+++.+.
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence             7788877776    34788888888877663

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=8.2e-08  Score=102.85  Aligned_cols=113  Identities=14%  Similarity=0.060  Sum_probs=87.0

Q ss_pred             HHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      +..++++++|+.+|++++..     ++++   ..++.+||.+|..+|+|++|+.++.++++....+++..          
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~----------  366 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS----------  366 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS----------
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC----------
Confidence            34578999999999999975     4444   45799999999999999999999766554322222111          


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHc
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----GVDMNK----QCNLAICLMHM  205 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----dPdn~~----~~NLA~iy~~q  205 (575)
                                         .|+-...++|||.+|..+|+|++|+.+|++|++|     -|+++.    ..+|+.++.++
T Consensus       367 -------------------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          367 -------------------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             -------------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence                               3334458999999999999999999999999997     477764    46787777654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.66  E-value=3.9e-07  Score=93.70  Aligned_cols=144  Identities=3%  Similarity=-0.037  Sum_probs=111.1

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHC---CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVM----KQL---DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy----~qq---GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      .++++++.++.++|..+|++..+++..+.++    ...   ++++++++++...++...           .....+....
T Consensus        83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-----------kny~aW~~R~  151 (306)
T 3dra_A           83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-----------KNHHVWSYRK  151 (306)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-----------TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHH
Confidence            3899999999999999999999999999999    777   788888887555444322           1111121111


Q ss_pred             HHHHHhc-----h-----hhHHhhcCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048          141 KMARSQG-----K-----KIQITVEQEKSRILGNLAWAYMQQNN------FEMAEQYYRKALSLGVDMNK-QCNLAICLM  203 (575)
Q Consensus       141 ~al~sqg-----~-----k~aL~L~Pd~~~a~~nLG~aY~~qGr------yeEAe~~yrkALeidPdn~~-~~NLA~iy~  203 (575)
                      -++...+     +     ...+..+|.+..+|++.+.++...|+      +++++.++.++|.++|+|.. +++++.++.
T Consensus       152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~  231 (306)
T 3dra_A          152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE  231 (306)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence            1111111     1     34678899999999999999999998      99999999999999999999 999999999


Q ss_pred             HcCCHHH-HHHHHHHHHHHc
Q 038048          204 HMNRVTE-AKSLLQAVKISA  222 (575)
Q Consensus       204 ~qGr~eE-Ai~lLekALel~  222 (575)
                      ..|+..+ +..++++++.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~  251 (306)
T 3dra_A          232 RFDRSITQLEEFSLQFVDLE  251 (306)
T ss_dssp             HTTCCGGGGHHHHHTTEEGG
T ss_pred             hcCCChHHHHHHHHHHHhcc
Confidence            9999655 556777777765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=2.3e-08  Score=107.16  Aligned_cols=70  Identities=11%  Similarity=-0.042  Sum_probs=61.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .-..++++||.+|..+|+|++|+.+|+++|++.     |+++.    ++|||.+|..+|++++|+.+|++|+++.....
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l  405 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH  405 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            334589999999999999999999999999873     55554    78999999999999999999999999876544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.63  E-value=5.9e-07  Score=93.58  Aligned_cols=146  Identities=7%  Similarity=-0.045  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR--SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr--ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +++++.++..+|..+|++..+++..+.++...|+  ++++++++...++....           ....+....-++...+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-----------Ny~AW~~R~~vl~~l~  158 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----------NFHCWDYRRFVAAQAA  158 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHhC
Confidence            6889999999999999999999999999999995  88888875555443221           1111111111111111


Q ss_pred             h---------hhHHhhcCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048          148 K---------KIQITVEQEKSRILGNLAWAYMQQ--------------NNFEMAEQYYRKALSLGVDMNK-QCNLAICLM  203 (575)
Q Consensus       148 ~---------k~aL~L~Pd~~~a~~nLG~aY~~q--------------GryeEAe~~yrkALeidPdn~~-~~NLA~iy~  203 (575)
                      .         ...+..+|.+..+|++++.++..+              +.+++++.++.+++.++|++.. ++.+.-++.
T Consensus       159 ~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          159 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            1         346788999999999999999988              5799999999999999999999 765555544


Q ss_pred             Hc-----------CCHHHHHHHHHHHHHHcCCCC
Q 038048          204 HM-----------NRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       204 ~q-----------Gr~eEAi~lLekALel~P~n~  226 (575)
                      ..           +.+++++.++++++++.|++.
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~  272 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQELEPENK  272 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence            44           468999999999999999763

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=5.4e-07  Score=92.58  Aligned_cols=100  Identities=11%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             hhHHhhcCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHH-cCCHHHHHHHHHHH
Q 038048          149 KIQITVEQE--KSRILGNLAWAYMQQ-----NNFEMAEQYYRKALSLGVDM-NK-QCNLAICLMH-MNRVTEAKSLLQAV  218 (575)
Q Consensus       149 k~aL~L~Pd--~~~a~~nLG~aY~~q-----GryeEAe~~yrkALeidPdn-~~-~~NLA~iy~~-qGr~eEAi~lLekA  218 (575)
                      +++++++|+  +..+|..||.+|...     |+.++|+.+|++||+++|+. .. .+.+|..|.. +|++++|..+|+++
T Consensus       187 erAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          187 ERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            467999999  556999999999996     99999999999999999975 77 9999999988 59999999999999


Q ss_pred             HHHcCCC-CCCh-hHHHHHHHHHHHHHHhccc
Q 038048          219 KISAGNR-QMDT-SYSRSFERAIQMLTELESP  248 (575)
Q Consensus       219 Lel~P~n-~~~~-~~l~slerA~elL~ele~a  248 (575)
                      +...|.. ++.. ......++++.+|.++...
T Consensus       267 L~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~  298 (301)
T 3u64_A          267 LAIDPESVPHNKLLVILSQKRARWLKAHVQDF  298 (301)
T ss_dssp             HHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCCCCChhHHHHHHHHHHHHHHHHhHHh
Confidence            9998864 4322 1223445677777765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.48  E-value=2.5e-06  Score=102.76  Aligned_cols=164  Identities=12%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH--------HHH-----
Q 038048           55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE--------IEL-----  121 (575)
Q Consensus        55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA--------i~l-----  121 (575)
                      ..+.+.+..+...|++++|+..|.+|     ++..++.++|.++.+.|+|++|++++..+....        +..     
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence            33444555556666777777777654     445666677777777777777777653322111        000     


Q ss_pred             -----HHHHHHhhHHHHHHHhHHHHHHHHhch-hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Q 038048          122 -----LQNKLKNIEEGIAFAGVKTKMARSQGK-KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV-----  190 (575)
Q Consensus       122 -----L~~~L~l~~~a~a~~~nla~al~sqg~-k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP-----  190 (575)
                           +...+..  .....+.+++..+.+.|+ ..++.. -..+..|..+|.+|.++|++++|+++|++|....+     
T Consensus      1181 ~rleele~fI~~--~n~ad~~~iGd~le~eg~YeeA~~~-Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A         1181 NRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLL-YNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred             cCHHHHHHHHhC--CCHHHHHHHHHHHHhcCCHHHHHHH-HHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence                 0000000  001123456666665555 111111 11134778888888888888888888888855543     


Q ss_pred             --------------------CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          191 --------------------DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       191 --------------------dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                                          .+++ ...++..|..+|.++||+.+|+++|.+++.+.
T Consensus      1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence                                1333 44677788888999999999988888876654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.33  E-value=2.6e-06  Score=90.45  Aligned_cols=133  Identities=11%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD---RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG---rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      +.+.|..+++.+...+|.   ++++||.+|...|   ++++|+.++..+.+...           .....+.+++.++..
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----------~~a~~~~~Lg~~y~~  225 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----------VTAQRVDSVARVLGD  225 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhC
Confidence            445555666666555554   7888888888888   88888887655433210           000111122222211


Q ss_pred             h----ch------hhHHhhcCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-----
Q 038048          146 Q----GK------KIQITVEQEKSRILGNLAWA-Y--MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-----  206 (575)
Q Consensus       146 q----g~------k~aL~L~Pd~~~a~~nLG~a-Y--~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-----  206 (575)
                      .    .+      -+...+ |.++.++++||.+ |  ...+++++|+.+|++|++.  +++. +++||.+|. .|     
T Consensus       226 g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~  301 (452)
T 3e4b_A          226 ATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPA  301 (452)
T ss_dssp             GGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCC
T ss_pred             CCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCC
Confidence            1    00      011223 8888888999988 4  5788999999999998855  4677 888998888 56     


Q ss_pred             CHHHHHHHHHHHH
Q 038048          207 RVTEAKSLLQAVK  219 (575)
Q Consensus       207 r~eEAi~lLekAL  219 (575)
                      ++++|+.+|+++.
T Consensus       302 d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          302 DAKAAEAHFEKAV  314 (452)
T ss_dssp             CHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHh
Confidence            8899999998888

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.28  E-value=1.3e-05  Score=96.73  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcC------------------HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGR------------------IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~ga------------------LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +.+.+|+.+|.++.+.|+++||+..|.++                  +++++..|..+.+..... .....++.++...+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTN 1181 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhc
Confidence            44678999999999999999999995443                  334444444333211000 00011333333333


Q ss_pred             h--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          148 K--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       148 ~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      +  ...--++..+...+.++|..|...|+|++|..+|.+|       ..+..||.+|.++|++++|++.++++...
T Consensus      1182 rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1182 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            3  1111123334456778999999999999999999997       13899999999999999999999998543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=4.5e-06  Score=85.14  Aligned_cols=162  Identities=8%  Similarity=-0.104  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      +...+.++...|++++|+.+|.+++...+..      ..++..+|.++...|++++|+.++...++......     ...
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~  132 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-----RVF  132 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-----CCS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----ccH
Confidence            5566777888999999999999998764432      23567889999999999999999666554332110     000


Q ss_pred             HHHHHHhHHHHHHHHhch-h-------hHHh------hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH
Q 038048          131 EGIAFAGVKTKMARSQGK-K-------IQIT------VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV---DMN  193 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~-k-------~aL~------L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP---dn~  193 (575)
                      .......+++..+...|+ .       .++.      -.+....++.++|.+|..+|+|++|..+|++++.+.+   +..
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            011223344444444444 0       0111      1344466999999999999999999999999998853   222


Q ss_pred             ----H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048          194 ----K-QCNLAICLMHMNRVTEAKSLLQAVKISAG  223 (575)
Q Consensus       194 ----~-~~NLA~iy~~qGr~eEAi~lLekALel~P  223 (575)
                          . +.++|.++...|++++|..+|.++++..+
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence                2 56889999999999999999999998754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.23  E-value=4.3e-07  Score=98.23  Aligned_cols=138  Identities=10%  Similarity=0.067  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...+..++..+++++|+..|.++     .+..++..++.++...|+|++|+.++..+.+....            ...
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~------------~~i   96 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------------SYV   96 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc------------chh
Confidence            4445556666777788888777653     23456777777777788888887765444332100            011


Q ss_pred             HhHHHHHHHHhch--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH
Q 038048          136 AGVKTKMARSQGK--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK  212 (575)
Q Consensus       136 ~~nla~al~sqg~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi  212 (575)
                      ...+..++...|+  ...--++..+..+|+++|..|...|+|++|..+|.++        . +..||.+|.++|++++|+
T Consensus        97 ~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A           97 ETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             ------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence            1112222222222  0001112223348888888888888888888888876        4 778888888888888888


Q ss_pred             HHHHHH
Q 038048          213 SLLQAV  218 (575)
Q Consensus       213 ~lLekA  218 (575)
                      ..++++
T Consensus       169 ea~~KA  174 (449)
T 1b89_A          169 DGARKA  174 (449)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            888887

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.21  E-value=1.4e-05  Score=68.14  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLG-------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeid-------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +.-++.||..++.+|+|..|+..|++|++..       +.... +.+||.+|.++|++++|+.++++++++.|++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            3467899999999999999999999999974       22344 88999999999999999999999999999864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.13  E-value=3e-05  Score=69.13  Aligned_cols=97  Identities=11%  Similarity=0.004  Sum_probs=78.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+.++......++|+.+|+++.+.  .+..++++||.+|..    .+++++|+.++..+.                    
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--------------------   88 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--------------------   88 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH--------------------
Confidence            555555667888999999999987  568899999999999    899999999854431                    


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                                         +..++.++++||.+|..    .+++++|+.+|++|.+..  +.. ..+|+
T Consensus        89 -------------------~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           89 -------------------GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             -------------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             -------------------cCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence                               23557799999999999    999999999999999873  444 55554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.10  E-value=5.6e-05  Score=79.27  Aligned_cols=138  Identities=10%  Similarity=-0.028  Sum_probs=99.6

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-C-CHHHHHHHHhcCHHHHHH---HHHHHHHhhHHHHHHHh-----
Q 038048           68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL-D-RSDEAIEARSGRIEEEIE---LLQNKLKNIEEGIAFAG-----  137 (575)
Q Consensus        68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq-G-rydEAie~~~gaLeeAi~---lL~~~L~l~~~a~a~~~-----  137 (575)
                      .++++++.++.++|..+|++..+++..+.++... + ++++++++....++....   ......-.+... ..+.     
T Consensus       103 ~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l-~~~~~~~~~  181 (349)
T 3q7a_A          103 KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF-STLGRISEA  181 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH-HHTTCCCHH
T ss_pred             hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccccccchh
Confidence            3699999999999999999999999999999998 8 888888875444332111   000000000000 0000     


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN-------FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV  208 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGr-------yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~  208 (575)
                      .+...+...  ...+..+|.+..+|++.+.++..+++       +++++.++.+++.++|+|.. ++++..++...|+.
T Consensus       182 ~~~eELe~~--~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          182 QWGSELDWC--NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            000000000  34678899999999999999999997       89999999999999999999 99999999888875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=7.5e-06  Score=76.52  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             hhcCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          153 TVEQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLG-V-DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       153 ~L~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeid-P-dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..++.+..+.+++|+++.+..   +.++|+.+|+++++.+ | ++.+ +|+||..|.++|+|++|..+++++|+++|++.
T Consensus        26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            446778889999999999998   7779999999999999 7 4456 99999999999999999999999999999875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.06  E-value=3e-06  Score=79.66  Aligned_cols=89  Identities=8%  Similarity=-0.074  Sum_probs=71.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH----------HHHHHHHHHHHHHcCCCCCCh----hHHHH
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV----------TEAKSLLQAVKISAGNRQMDT----SYSRS  234 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~----------eEAi~lLekALel~P~n~~~~----~~l~s  234 (575)
                      .+.++|++|+..|++|++++|+++. ++|+|.+|..+|++          ++|+..|+++|+++|++..+.    .....
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4667899999999999999999999 99999999999886          599999999999999875311    11122


Q ss_pred             -----------HHHHHHHHHHhccccccCcccccc
Q 038048          235 -----------FERAIQMLTELESPSVLKLTELEV  258 (575)
Q Consensus       235 -----------lerA~elL~ele~al~~~p~~~e~  258 (575)
                                 +++..+++..++.++.++|.....
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence                       246777777788888888876533

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.05  E-value=3.2e-05  Score=65.83  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      +.-.+.||..+.++|+|+.|+..+..++..    +...                          .........++.+||.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~----~~~~--------------------------~~~~~~~~~i~~~L~~   54 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQ----LDEG--------------------------EISTIDKVSVLDYLSY   54 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHTT--------------------------CCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHh----hhcc--------------------------CCCcccHHHHHHHHHH
Confidence            345678999999999999999996554321    0000                          0012345679999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA  199 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA  199 (575)
                      +|.++|++++|+.+|++|++++|++.. ..|++
T Consensus        55 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            999999999999999999999999998 88887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.02  E-value=4e-05  Score=79.20  Aligned_cols=137  Identities=11%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--HHHHHHHHhhHHHHHHHhHHHHHHHHhch--
Q 038048           73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--ELLQNKLKNIEEGIAFAGVKTKMARSQGK--  148 (575)
Q Consensus        73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--~lL~~~L~l~~~a~a~~~nla~al~sqg~--  148 (575)
                      |+..|++.+..++....+++.+|.+|...|++++|+.++.+.++...  ..+           ........++...|+  
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l-----------ea~~l~vqi~L~~~r~d  153 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT-----------ELLLLAIEVALLNNNVS  153 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH-----------HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH-----------HHHHHHHHHHHHCCCHH
Confidence            88889888877656667778999999999999999998654322100  001           111111112222222  


Q ss_pred             ------hhHHhhcCC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHH
Q 038048          149 ------KIQITVEQE----KSRILGNL--AWAYMQQN--NFEMAEQYYRKALSLGVDM--NK-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       149 ------k~aL~L~Pd----~~~a~~nL--G~aY~~qG--ryeEAe~~yrkALeidPdn--~~-~~NLA~iy~~qGr~eEA  211 (575)
                            +.....+|+    +..+..+|  |++.+..|  ++++|..+|+++.+..|+.  .. .+|   +++.+|++++|
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred             HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence                  112345663    23344555  56677777  9999999999998888873  23 445   89999999999


Q ss_pred             HHHHHHHHHHcC
Q 038048          212 KSLLQAVKISAG  223 (575)
Q Consensus       212 i~lLekALel~P  223 (575)
                      +..++.+++..|
T Consensus       231 e~~L~~l~~~~p  242 (310)
T 3mv2_B          231 QGIVELLLSDYY  242 (310)
T ss_dssp             HHHHHHHHSHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999998888753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.97  E-value=4.7e-05  Score=71.16  Aligned_cols=88  Identities=17%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD---RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG---rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      ...+...|..++..++....+.+++|.++.+.+   ++++|+.++...                                
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l--------------------------------   61 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL--------------------------------   61 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------------------------------
Confidence            356778888888888888999999999999988   566888773321                                


Q ss_pred             chhhHHhhc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          147 GKKIQITVE-Q-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       147 g~k~aL~L~-P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                           +..+ | +..+++|+||..|+++|+|++|..+++++|+++|+|..
T Consensus        62 -----l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           62 -----LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             -----HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             -----HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence                 1223 4 34569999999999999999999999999999999986

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=2.7e-05  Score=66.04  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=63.4

Q ss_pred             CCCcHHHHHHHHHHHHHCCC---HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH
Q 038048           84 GDRVDSALKDMAVVMKQLDR---SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR  160 (575)
Q Consensus        84 ~p~~~~Al~nLA~iy~qqGr---ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~  160 (575)
                      +|+++.++..+|.++...+.   .++|+.++.+                                     ++.++|++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~-------------------------------------AL~~dp~~~r   44 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQ-------------------------------------ALQLEPYNEA   44 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHH-------------------------------------HHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-------------------------------------HHHHCcCCHH
Confidence            57788999999999987666   6888887433                                     3677999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                      +++.||.++++.|+|++|+.+|+++++.+|+.+
T Consensus        45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           45 ALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            999999999999999999999999999999943

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.83  E-value=2.3e-05  Score=84.84  Aligned_cols=194  Identities=11%  Similarity=0.066  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH---HhhHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL---KNIEEG  132 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L---~l~~~a  132 (575)
                      .|...+..+...|++++|+.+|+.+++..++ +.+...|+.+|.+.|+++++++++.+--..+...++...   .....+
T Consensus        63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA  141 (449)
T 1b89_A           63 SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA  141 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTCC----------------CTTTH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Confidence            4455555566688999999999998875333 566788999999999999988875442111111111111   000000


Q ss_pred             ------HHHHhHHHHHHHHhch-hhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038048          133 ------IAFAGVKTKMARSQGK-KIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM  203 (575)
Q Consensus       133 ------~a~~~nla~al~sqg~-k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~  203 (575)
                            ...+.+++.++...|+ ..++..  .-.++.+|..++.++...|+++.|..+... |.++|+.  ...+..+|.
T Consensus       142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Ye  218 (449)
T 1b89_A          142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQ  218 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHH
Confidence                  0112333333333333 000000  012334444444444444455444444443 1122222  345678899


Q ss_pred             HcCCHHHHHHHHHHHHHHcCCCCCChhHH------HHHHHHHHHHHHhccccccCc
Q 038048          204 HMNRVTEAKSLLQAVKISAGNRQMDTSYS------RSFERAIQMLTELESPSVLKL  253 (575)
Q Consensus       204 ~qGr~eEAi~lLekALel~P~n~~~~~~l------~slerA~elL~ele~al~~~p  253 (575)
                      +.|++++|+.+|++++.+++.+.+.-..+      =.-++..+.+..+.+.+.+.+
T Consensus       219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            99999999999999999886543210000      012556666776666666555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.77  E-value=0.00053  Score=77.66  Aligned_cols=183  Identities=9%  Similarity=-0.037  Sum_probs=120.6

Q ss_pred             hhhhHh-hcCCCCCcHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH
Q 038048           42 DIFHVI-HKVPSGDSPYVRAKHIQLIDKDPSRAV-SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI  119 (575)
Q Consensus        42 e~y~~~-~~~ps~d~~yarA~~l~l~~kd~eeAi-~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi  119 (575)
                      ..|... ...|....-+..........++.++|. ..|.+|+...|.....+..++.++...|++++|.+++...++.-.
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345433 233333333444445556677888997 999999999999888899999999999999999999766655321


Q ss_pred             HHHH---HH-------HHhhH-HHHHHHhHHHHHHHHhch--------hhHHhh-cCCcHHHHHHHHHHHHHcC-CHHHH
Q 038048          120 ELLQ---NK-------LKNIE-EGIAFAGVKTKMARSQGK--------KIQITV-EQEKSRILGNLAWAYMQQN-NFEMA  178 (575)
Q Consensus       120 ~lL~---~~-------L~l~~-~a~a~~~nla~al~sqg~--------k~aL~L-~Pd~~~a~~nLG~aY~~qG-ryeEA  178 (575)
                      ..+.   ..       +.... .....+-.+.......+.        ..++.. .+....+|...|.+-...+ +++.|
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A  489 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA  489 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence            1111   00       00000 000111222222221111        123333 2233456766676666665 49999


Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                      ..+|+++|+..|++.. +..++..+...|+.+.|..+|++++...|+
T Consensus       490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999 888999999999999999999999998774

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.59  E-value=9.9e-05  Score=75.87  Aligned_cols=107  Identities=14%  Similarity=-0.016  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHC-----CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048           70 PSRAVSLFWAAINAGDRV--DSALKDMAVVMKQL-----DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM  142 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qq-----GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a  142 (575)
                      ...|...+++||+++|+.  ..++.-||.+|...     |+.++|++++.+                             
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer-----------------------------  229 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH-----------------------------  229 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH-----------------------------
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH-----------------------------
Confidence            478999999999999994  55999999999995     999999998544                             


Q ss_pred             HHHhchhhHHhhcCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          143 ARSQGKKIQITVEQEK-SRILGNLAWAYMQ-QNNFEMAEQYYRKALSLGVDM-NKQCNLAICLMHMNRVTEAKSLLQAV  218 (575)
Q Consensus       143 l~sqg~k~aL~L~Pd~-~~a~~nLG~aY~~-qGryeEAe~~yrkALeidPdn-~~~~NLA~iy~~qGr~eEAi~lLekA  218 (575)
                              ++.++|+. ..+++..|..|+. +|++++|..++++||.++|.. +.     ..+...++-.+|..++.++
T Consensus       230 --------AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-----~~lan~~~q~eA~~LL~~~  295 (301)
T 3u64_A          230 --------LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-----NKLLVILSQKRARWLKAHV  295 (301)
T ss_dssp             --------HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-----CHHHHHHHHHHHHHHHHTH
T ss_pred             --------HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-----hhHHHHHHHHHHHHHHHHh
Confidence                    36789975 8999999999988 599999999999999999885 42     1222333445666666544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.08  E-value=0.0011  Score=60.03  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             hcCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCH-H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          154 VEQEKSRILGNLAWAYMQQNNFEM---AEQYYRKALSLG-VDMN-K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       154 L~Pd~~~a~~nLG~aY~~qGryeE---Ae~~yrkALeid-Pdn~-~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++....+.+++|+++....+..+   ++.+++..+..+ |... . .+.||..+.++|+|++|..+++.+|++.|+|.
T Consensus        30 ~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           30 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            356667899999999999998888   999999999987 6333 4 89999999999999999999999999999875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.74  E-value=0.011  Score=53.48  Aligned_cols=89  Identities=20%  Similarity=0.161  Sum_probs=69.7

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH---HHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDE---AIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydE---Aie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      ....+...|..++..++....+.+++|.++.......+   +|.+.           ...+                   
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lL-----------e~l~-------------------   65 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLL-----------EELL-------------------   65 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHH-----------HHHT-------------------
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-----------HHHH-------------------
Confidence            45567788888888888888999999999999887776   44441           1111                   


Q ss_pred             hchhhHHhhc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          146 QGKKIQITVE-Q-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       146 qg~k~aL~L~-P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                             ..+ | ..-+.++.||..++++|+|++|..+++..|+++|+|..
T Consensus        66 -------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           66 -------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             -------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             -------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence                   111 2 23358999999999999999999999999999999987

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.68  E-value=0.024  Score=61.59  Aligned_cols=117  Identities=12%  Similarity=0.108  Sum_probs=93.3

Q ss_pred             ChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           69 DPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      +.+.|..+|.+....+-. +..+|+.|-..|.+.|++++|+.++..-                             ..  
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M-----------------------------~~--  133 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM-----------------------------KA--  133 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------------------HH--
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------HH--
Confidence            368899999988776422 3568889999999999999999873220                             00  


Q ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                          .-+.|+ ..+|+.|-..|.+.|++++|..+|++..+.  .|+...+..|-.+|.+.|+.++|..+|++..+.
T Consensus       134 ----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          134 ----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             ----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence                112343 447888899999999999999999999875  576666888999999999999999999998775

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.61  E-value=0.0083  Score=56.78  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----------------------HH-HHHHHHHHHHcCCHHHHHH
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDM----------------------NK-QCNLAICLMHMNRVTEAKS  213 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn----------------------~~-~~NLA~iy~~qGr~eEAi~  213 (575)
                      .++..+|++++.+|+|..|+.+|++||.+.   +.+                      .+ .+.+|.||.++|++++|+.
T Consensus        64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A           64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence            488999999999999999999999998753   111                      14 6889999999999999999


Q ss_pred             HHHHH
Q 038048          214 LLQAV  218 (575)
Q Consensus       214 lLekA  218 (575)
                      .++.+
T Consensus       144 ~Le~I  148 (167)
T 3ffl_A          144 ILDGI  148 (167)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            98753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.60  E-value=0.01  Score=54.88  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          156 QEKSRILGNLAWAYMQQNNFE---MAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~qGrye---EAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .-...+.+++|+++..-.+..   +++.+++..+...|....  .+.||..+.++|+|++|..+.+.+|+..|+|.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            345669999999999987665   799999999999997765  89999999999999999999999999999875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.55  E-value=0.015  Score=65.88  Aligned_cols=133  Identities=5%  Similarity=-0.038  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINA-GDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQNKLKNIEEGIA  134 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l-~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a  134 (575)
                      +..........++.+.|..+|.+|++. .+.....+...|.+....++ ++.|..++...                    
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~--------------------  496 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG--------------------  496 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH--------------------
Confidence            333334444557788999999999887 43344555555666655544 78888774332                    


Q ss_pred             HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH-H-HHHHHHHHHHcCCHHH
Q 038048          135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MN-K-QCNLAICLMHMNRVTE  210 (575)
Q Consensus       135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~-~-~~NLA~iy~~qGr~eE  210 (575)
                                       +...|++...+...+......|+.+.|..+|++|+...|+  .. . +..+...-...|..+.
T Consensus       497 -----------------Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~  559 (679)
T 4e6h_A          497 -----------------LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS  559 (679)
T ss_dssp             -----------------HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred             -----------------HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence                             3345777778888888889999999999999999999884  33 3 6677788889999999


Q ss_pred             HHHHHHHHHHHcCCCC
Q 038048          211 AKSLLQAVKISAGNRQ  226 (575)
Q Consensus       211 Ai~lLekALel~P~n~  226 (575)
                      +..+++++++..|++.
T Consensus       560 ~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          560 VRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHhCCCCc
Confidence            9999999999999764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.53  E-value=0.0072  Score=63.91  Aligned_cols=75  Identities=19%  Similarity=0.076  Sum_probs=64.2

Q ss_pred             HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHH
Q 038048           82 NAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRI  161 (575)
Q Consensus        82 ~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a  161 (575)
                      ..+|..+.++..+|.++...|++++|+....+                                     ++.++|+ ..+
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~r-------------------------------------Al~Ln~s-~~a  312 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINT-------------------------------------GIDLEMS-WLN  312 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------------HHHHCCC-HHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------------------------HHhcCCC-HHH
Confidence            45688888999999999999999999998433                                     3455664 567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      |..+|.++...|++++|++.|.+|+.++|....
T Consensus       313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            889999999999999999999999999998876

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.42  E-value=0.012  Score=53.86  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          159 SRILGNLAWAYMQQNNF---EMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       159 ~~a~~nLG~aY~~qGry---eEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+.+++|+++.+-.+.   .+++.+++..+...|....  ++.||..+.++|+|++|..+.+.+|++.|+|.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            46889999999988766   4699999999999997665  99999999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.99  E-value=0.11  Score=56.23  Aligned_cols=130  Identities=12%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             HHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      ...|++++|+.+|......+-. +..+|+.|-.++...+...++..  .+.++.+..++.....                
T Consensus        37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~--~~~l~~A~~lf~~M~~----------------   98 (501)
T 4g26_A           37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP--NPGLSRGFDIFKQMIV----------------   98 (501)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC--CHHHHHHHHHHHHHHH----------------
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh--cchHHHHHHHHHHHHH----------------
Confidence            4568999999999988876422 23456666666665555332211  0111222222222110                


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                              .-+.|+ ..+|+.|-.+|.+.|++++|+.+|++..+.  .|+...+..|-..|.+.|++++|..+|++..+.
T Consensus        99 --------~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A           99 --------DKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             --------TTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --------hCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                    122343 447899999999999999999999998875  566555888889999999999999999998874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.67  E-value=0.3  Score=52.65  Aligned_cols=47  Identities=11%  Similarity=-0.008  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048           71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE  117 (575)
Q Consensus        71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee  117 (575)
                      +.....|+++|...|..+..|...+..+.+.|+.++|..++..++..
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999999999999887665544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.22  Score=57.21  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      ..+..-+..+...|+|+-|+.+.++|+.+-|+... |+.|+.+|..+|+|+.|+-.++.
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            35555678888999999999999999999999999 99999999999999999976553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.82  E-value=0.19  Score=47.02  Aligned_cols=64  Identities=17%  Similarity=0.092  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +|...|.. ...++.++|.+.|+.++.+...++. +...|..-..+|+.+.|.+++.+++...|..
T Consensus        63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            55556643 6679999999999999999888977 9999999999999999999999999988753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.62  E-value=0.86  Score=50.06  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             HHHHHcCChHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           62 HIQLIDKDPSRAVS-LFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        62 ~l~l~~kd~eeAi~-lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      ...+..+++++|.. ++.    .-++ ...+..++..+...|.+++|+.........    +...+        ..+++.
T Consensus       607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~----f~~~l--------~~~~~~  669 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISPDQDQK----FELAL--------KVGQLT  669 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCCCHHHH----HHHHH--------HHTCHH
T ss_pred             hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCCCcchh----eehhh--------hcCCHH
Confidence            34567889999876 441    0010 122356778889999999999874321100    11111        112222


Q ss_pred             HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048          141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA  185 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA  185 (575)
                      .++.       +...-++...|.+||..+.+.|+++.|+.+|.++
T Consensus       670 ~A~~-------~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          670 LARD-------LLTDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHH-------HHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHH-------HHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            2211       2223456779999999999999999999999985

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.57  E-value=0.18  Score=52.89  Aligned_cols=61  Identities=11%  Similarity=-0.090  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                      +...++.++...|++.+|+..+++++..+|-+.. +..|-.+|...|+..+|+..|+++...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5567888999999999999999999999999998 889999999999999999999987664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.29  E-value=0.37  Score=45.52  Aligned_cols=130  Identities=11%  Similarity=-0.107  Sum_probs=76.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc---CCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINA---GDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE  130 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l---~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~  130 (575)
                      -....+..+.++.|+.+...++..   +++.      ..++..+|.+++..++|..|+..|..++.....+.+..-.   
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~---  102 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV---  102 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence            334456778999999998887654   3332      2478899999999999999999977765532211111100   


Q ss_pred             HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                        ....   + ...+..  .... .+.+.++-+.++.+|.++|++++|+..++.. -..-..+. ...||.+|
T Consensus       103 --~~~~---~-~~ss~p--~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 --RPST---G-NSASTP--QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             --cccc---c-ccCCCc--cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence              0000   0 000000  0011 1345568899999999999999999986542 11222333 44555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.12  E-value=0.72  Score=50.70  Aligned_cols=93  Identities=19%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGR--IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG  163 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~ga--LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~  163 (575)
                      +....|..||..+.+.|+++.|+.+|...  +.....                               +.....+...+.
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~-------------------------------l~~~~~~~~~~~  727 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFL-------------------------------LHSSFNNKEGLV  727 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH-------------------------------HHHHTTCHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHH-------------------------------HHHHcCCHHHHH
Confidence            34567788888888888888888885442  111000                               011122333445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      .++.+....|++..|..+|.+.        . .-....+|.+.+++++|+.+-++
T Consensus       728 ~~~~~a~~~~~~~~A~~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          728 TLAKDAETTGKFNLAFNAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence            5666666666666666555441        1 22334456677777777776554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.09  E-value=1.7  Score=46.76  Aligned_cols=51  Identities=8%  Similarity=-0.104  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          175 FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       175 yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .......|+++|...|..+. +++++..+..+|+.++|..+|++++.. |.+.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence            34567788888888888888 888888888888888888888888888 7653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.84  E-value=0.29  Score=53.48  Aligned_cols=62  Identities=21%  Similarity=0.058  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .+..||++......+..|..+|.+|+.+.|++.. ++.||.+...+|+.-+|+-+|-+++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            6788999999999999999999999999999999 9999999999999999999999998764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.75  E-value=1.9  Score=39.79  Aligned_cols=75  Identities=9%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC-CcHHHHHH
Q 038048           86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ-EKSRILGN  164 (575)
Q Consensus        86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P-d~~~a~~n  164 (575)
                      -...+.+++|.++......++-..-        +.++...+                          ...| ..-+.++.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~G--------I~LLe~l~--------------------------~~~~~~~RdcLYy   82 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLG--------VKILTDIY--------------------------KEAESRRRECLYY   82 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHH--------HHHHHHHH--------------------------HHCCSTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHH--------HHHHHHHH--------------------------hcCccchhHHHHH
Confidence            4567889999999998876654322        12222211                          1234 33458999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       165 LG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      ||..++++|+|.+|..+.+..|++.|+|..
T Consensus        83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           83 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            999999999999999999999999999986

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.71  E-value=1.1  Score=40.92  Aligned_cols=74  Identities=9%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC-cHHHHHHH
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE-KSRILGNL  165 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd-~~~a~~nL  165 (575)
                      ...+.+++|.++......++-..-        +.+|...+                          ..+|. .-+.++.|
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~G--------I~LLe~l~--------------------------~~~~~~~Rd~LYyL   84 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLG--------VKILTDIY--------------------------KEAESRRRECLYYL   84 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHH--------HHHHHHHH--------------------------HHCGGGHHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHH--------HHHHHHHH--------------------------hcCcchhHHHHHHH
Confidence            467888999999988776543221        22222211                          12342 34589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          166 AWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       166 G~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      |..+.++|+|++|..+.+.+|++.|+|..
T Consensus        85 Avg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           85 TIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            99999999999999999999999999997

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.00  E-value=4.2  Score=38.53  Aligned_cols=47  Identities=6%  Similarity=-0.138  Sum_probs=39.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048           63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR  114 (575)
Q Consensus        63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga  114 (575)
                      +++..|+++.|.++.+..     ++...|..||...+.+|+++-|+.+|...
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            457789999998886543     45678999999999999999999997654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.38  E-value=5.4  Score=38.34  Aligned_cols=112  Identities=10%  Similarity=-0.052  Sum_probs=78.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      -.|++.++-+-.-.+...|   +-...+++++.-.|.|..|+-+..                                  
T Consensus        15 Y~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~R~Lf~L~----------------------------------   57 (242)
T 3kae_A           15 YRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYTRALFHLH----------------------------------   57 (242)
T ss_dssp             TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHH----------------------------------
T ss_pred             cccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHhHHHHHHH----------------------------------
Confidence            3577776532221222222   344567888888899888886621                                  


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------CCCCHH--HHHHHHHHHHcCC
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS--L---------------GVDMNK--QCNLAICLMHMNR  207 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe--i---------------dPdn~~--~~NLA~iy~~qGr  207 (575)
                              +-+-.++.+.-..+|....+|..|+.+++..|+  +               +|.+.+  ...+|.++...|.
T Consensus        58 --------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~  129 (242)
T 3kae_A           58 --------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY  129 (242)
T ss_dssp             --------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC
T ss_pred             --------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC
Confidence                    223345667778899999999999999999993  3               245555  4568999999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 038048          208 VTEAKSLLQAVKISAG  223 (575)
Q Consensus       208 ~eEAi~lLekALel~P  223 (575)
                      .+||+.++.......+
T Consensus       130 r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          130 REEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHhhhHhhhhcCCcc
Confidence            9999999998888765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.10  E-value=9.7  Score=36.61  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=70.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH-HHHHHHhH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE-EGIAFAGV  138 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~-~a~a~~~n  138 (575)
                      ..++..+.|.+..|+-++-     .-+...+.|.-+.+|....+|..|+......++       ..++..+ .+..    
T Consensus        39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~-------~kvd~d~~~d~~----  102 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILE-------GKVERDPDVDAR----  102 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCSBCCCCCCHH----
T ss_pred             hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccCcccccc----
Confidence            4466788899988875552     234456677779999999999999987322111       0000000 0000    


Q ss_pred             HHHHHHHhchhhHHhhcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          139 KTKMARSQGKKIQITVEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                                -...-++|.+.+ .+..+|.++.+.|+-+||+.+|.....++|=+.
T Consensus       103 ----------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          103 ----------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             ----------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ----------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence                      001245777777 556669999999999999999999888765443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.90  E-value=0.78  Score=48.59  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ..++..||..|.+.|++++|.+++....+.                                  ..-..+-.+++..+..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~----------------------------------~~~~~~kid~~l~~ir  176 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSK----------------------------------AISTGAKIDVMLTIAR  176 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHH----------------------------------HTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------cCChHHHHHHHHHHHH
Confidence            347789999999999999999985442111                                  0112233457888889


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          168 AYMQQNNFEMAEQYYRKALSLG---VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeid---Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      ++...+++..|..++.+|..+.   ++...    ..-.|.+++..++|.+|-.+|-.++...
T Consensus       177 l~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          177 LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            9999999999999999997763   22221    3456888899999999999999988764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.20  E-value=4.6  Score=48.07  Aligned_cols=100  Identities=9%  Similarity=-0.036  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      ..++.|-..|.+.|+.++|..++..-           ....                     .--+.|+ ..+|+.|-..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM-----------~~m~---------------------~kG~~Pd-vvTYNtLI~G  174 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVH-----------HGQR---------------------QKRKLLT-LDMYNAVMLG  174 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHSH---------------------HHHTTCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH-----------HHHh---------------------hcCCCCC-HhHHHHHHHH
Confidence            36788888999999999999873220           0000                     0012233 4488999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 038048          169 YMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRV-TEAKSLLQAVKIS  221 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~-eEAi~lLekALel  221 (575)
                      |++.|++++|..+|++..+.  .||...+..|-.+|.+.|+. ++|..+|++....
T Consensus       175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            99999999999999999874  58777777788899999985 7888999888764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.13  E-value=15  Score=38.91  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEA  110 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~  110 (575)
                      .+.+.||.+|.+.|++++-.++
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~   41 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADL   41 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Confidence            3567899999999999999888

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=86.66  E-value=8.1  Score=36.12  Aligned_cols=53  Identities=15%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCC
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNR  207 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr  207 (575)
                      ...++.+|...|..-.++|+...|...+.+|+...|....++..|..-++.|+
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~  142 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK  142 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence            45556688888999999999999999999999999998877777777666665

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.01  E-value=3.5  Score=43.96  Aligned_cols=102  Identities=19%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      ....||.+|...|++.+|..+......+                 +++.       ..       ...-..++.....+|
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~E-----------------t~~~-------~~-------~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVE-----------------TYGS-------ME-------MSEKIQFILEQMELS  187 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------HCSS-------SC-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH-----------------HHhc-------cc-------HHHHHHHHHHHHHHH
Confidence            4467899999999999999884332110                 0000       00       000123666677899


Q ss_pred             HHcCCHHHHHHHHHHHHH---hCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          170 MQQNNFEMAEQYYRKALS---LGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALe---idPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      ...+++..|..++.++..   -.+..+.     ..-+|.++...++|.+|-.+|..++...
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            999999999999998743   1233332     3467888999999999999999998853

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.80  E-value=2.4  Score=46.18  Aligned_cols=55  Identities=13%  Similarity=0.149  Sum_probs=50.2

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH  204 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~  204 (575)
                      +++.+.|+...+|+.||.+....|+.-+|+-+|-++|....-++. ..||..++.+
T Consensus       177 ~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            467889999999999999999999999999999999998877888 9999988865

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.26  E-value=2.7  Score=42.49  Aligned_cols=58  Identities=9%  Similarity=-0.019  Sum_probs=54.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+++.|.+++|++.....++-+|.+.. ...|..+|.-.|+++.|..-++-+.+++|+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            456789999999999999999999999 9999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	575
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.004
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 51  PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110
           P+    Y+   ++    +   RAV+ +  A++          ++A V  +    D AI+ 
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

Query: 111 --RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168
             R+  ++         L       A     +           + +    +  L NLA  
Sbjct: 260 YRRAIELQPHFPDAYCNL-----ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA-KSLLQAVKI 220
             +Q N E A + YRKAL +  +      NLA  L    ++ EA     +A++I
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS---------GRIEEE 118
                A+  +  AI        A  ++A  +K+     EA +  +               
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMA 178
           +  ++ +  NIEE +              +K  + V  E +    NLA    QQ   + A
Sbjct: 311 LANIKREQGNIEEAVRLY-----------RKA-LEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 179 EQYYRKALSLGVDMNK-QCNLAICLMHMN 206
             +Y++A+ +         N+   L  M 
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVD-MNKQCNLAICLMHMNRVTEAKSLL-QAVKIS 221
            LA    Q  +FE AE++  +      D       L+       R+  +      A+K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 222 AGN 224
              
Sbjct: 64  PLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCN 197
             + A     ++    E + + +L  L+  + Q    + +  +   A+     + +   N
Sbjct: 14  DFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72

Query: 198 LAICLMHMN 206
           L        
Sbjct: 73  LGNVYKERG 81

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRV 208
            L     ++ +F  A++Y+ KA  L  + +   NL +       V
Sbjct: 7   GLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGV 50

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 13/149 (8%), Positives = 38/149 (25%), Gaps = 6/149 (4%)

Query: 72  RAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131
           + +       N           + ++  +   +   ++ +S       +     L +I  
Sbjct: 104 QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDI-- 161

Query: 132 GIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191
              +    ++         Q+       +    LA     + +      YY +++++   
Sbjct: 162 -ARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 192 MNK-QCNLAICLMHMNRVTEAKSLLQAVK 219
                 NL   L       +       V 
Sbjct: 219 FPAASTNLQKALSKALESRDEVKTKWGVS 247

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 20/194 (10%), Positives = 44/194 (22%), Gaps = 17/194 (8%)

Query: 35  PENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDM 94
            E          +  +       +    +       +R  +L        D + +A K  
Sbjct: 160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 219

Query: 95  AVVMKQLDRSDE-------AIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147
            +  +                +             +N  +       F   +  +     
Sbjct: 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279

Query: 148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------KQCN 197
               + +  + +R L  L   Y Q      A++    AL L                   
Sbjct: 280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339

Query: 198 LAICLMHMNRVTEA 211
               L+ +N + E 
Sbjct: 340 QLRQLIQLNTLPEL 353

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ------CNLAICLMHMNRVTEAK 212
           +      A   +   N + AE+  + AL                 L   L     +T + 
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 213 SLLQ 216
           +L+Q
Sbjct: 72  ALMQ 75

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 68  KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE---------EE 118
           KD   A+  F A  +   R      ++  +   L    EA +A +  I           +
Sbjct: 19  KDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 75

Query: 119 IELLQNKLKNIEEGIAFAGVKTKMARSQG----KKIQITVEQEKSRILGNLAWAYMQQNN 174
             +L  + +  +  I          R       K + +  +     +L N+A+ Y ++  
Sbjct: 76  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 135

Query: 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAG 223
           ++ AE+    A S+  +  +   +   +  + +    + L + V I  G
Sbjct: 136 WKKAEEQLALATSMKSE-PRHSKIDKAMECVWK----QKLYEPVVIPVG 179

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 12/70 (17%)

Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSL------------GVDMNKQCNLAICLMHMN 206
            R   NL  + +       A +++ +AL++             +  N    L + L  + 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 207 RVTEAKSLLQ 216
           +     +   
Sbjct: 300 QSDAYGAADA 309

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 10/103 (9%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 90  ALKDMAVVMKQLDRSDEAIEA--RSGRIEEEIELLQNKLKN--IEEGIAFAGVKTKMARS 145
             K++     +    D A++   ++  ++               E+G      +      
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
           +  +      ++ ++    +  +Y ++  ++ A  +Y K+L+ 
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.7
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.45
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.22
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.17
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.12
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.06
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.93
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.91
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.3
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.9
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.42
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.42
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.76

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.8e-16  Score=153.08  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------------
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-------------------  116 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------------  116 (575)
                      .+...+.++...+++++|+..|.+++.++|.+..++.++|.+|..+|++++|++++...+.                   
T Consensus        55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (323)
T d1fcha_          55 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA  134 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhc
Confidence            4444445555555555555555555555555555555555555555555555554221110                   


Q ss_pred             -------------------HHHHHHHHHHHhhHH--HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHH
Q 038048          117 -------------------EEIELLQNKLKNIEE--GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAW  167 (575)
Q Consensus       117 -------------------eAi~lL~~~L~l~~~--a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~  167 (575)
                                         +++..+...+...+.  ....+..++..+...|+        +.++.++|++..+++++|.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  214 (323)
T d1fcha_         135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA  214 (323)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhh
Confidence                               111111111111000  11223344555555555        3457778888888889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++|+++|++.
T Consensus       215 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         215 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             cccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            999999999999999999999998888 88899999999999999999999999888764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.3e-16  Score=150.70  Aligned_cols=176  Identities=19%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh-----------------
Q 038048           50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS-----------------  112 (575)
Q Consensus        50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~-----------------  112 (575)
                      .|.....+...+......+++++|+.++.++++.+|++..++..+|.+|...|++++|+..+.                 
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            333334455555666778899999999999999999999999999999999999999988732                 


Q ss_pred             ------cCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHH
Q 038048          113 ------GRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMA  178 (575)
Q Consensus       113 ------gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEA  178 (575)
                            +.+++++..+...+...+.....+.+++.++...++        ..++...|....++..+|.+|..+|++++|
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence                  333344444444443333333334444444444444        223444566666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      +.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++
T Consensus       325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            6666666666666666 6666666666666666666666666666654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=147.61  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048           48 HKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA  110 (575)
Q Consensus        48 ~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~  110 (575)
                      ...|.....+...+.++...+++++|+.+|+++++.+|.+..+++.||.+|..+|++++|+..
T Consensus        27 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~   89 (388)
T d1w3ba_          27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccc
Confidence            344555556666778888899999999999999999999999999999999999999999988

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-15  Score=148.14  Aligned_cols=197  Identities=14%  Similarity=0.074  Sum_probs=139.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH----------------------
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE----------------------  116 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe----------------------  116 (575)
                      .-+..++..|++++|+..|+++|+.+|++..++++||.+|..+|++++|+.++..+++                      
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence            4456778999999999999999999999999999999999999999999998554443                      


Q ss_pred             -HHHHHHHHHHHhhHHHHHH---------HhHH------HHHHHHhch--------hhHHhhcCC--cHHHHHHHHHHHH
Q 038048          117 -EEIELLQNKLKNIEEGIAF---------AGVK------TKMARSQGK--------KIQITVEQE--KSRILGNLAWAYM  170 (575)
Q Consensus       117 -eAi~lL~~~L~l~~~a~a~---------~~nl------a~al~sqg~--------k~aL~L~Pd--~~~a~~nLG~aY~  170 (575)
                       +++..+...+...+.....         ..++      ...+...+.        ..++.++|+  ++.++.++|.++.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence             3333333333211000000         0000      000000000        234566765  4668999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHh
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTEL  245 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~el  245 (575)
                      .+|++++|+.+|++++.++|++.. ++++|.+|..+|++++|+.+|+++++++|++....    ......++..+++..+
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999 99999999999999999999999999999865211    1122333445555555


Q ss_pred             ccccccCccc
Q 038048          246 ESPSVLKLTE  255 (575)
Q Consensus       246 e~al~~~p~~  255 (575)
                      +.++.++|..
T Consensus       264 ~~al~l~p~~  273 (323)
T d1fcha_         264 LEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHhCCcC
Confidence            5555555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.2e-14  Score=136.97  Aligned_cols=101  Identities=11%  Similarity=-0.052  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048           57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA  136 (575)
Q Consensus        57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~  136 (575)
                      |...+.++...|++++|+..|.++|.++|+++.++++||.+|..+|++++|+..+..                       
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-----------------------   96 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS-----------------------   96 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhH-----------------------
Confidence            445567788899999999999999999999999999999999999999999998544                       


Q ss_pred             hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                                    ++.++|++..+++++|.+|..+|++++|+..|+++++++|++..
T Consensus        97 --------------al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_          97 --------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             --------------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --------------HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence                          34568888888888888888888888888888888888887665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.2e-14  Score=140.92  Aligned_cols=130  Identities=9%  Similarity=0.024  Sum_probs=97.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      .+.+....+.+++|+.+|.+||+++|.+..+++++|.++...|+ +++|+..+..+                        
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~a------------------------  104 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI------------------------  104 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------------------
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHH------------------------
Confidence            34455667899999999999999999999999999999999886 89999874432                        


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                                   +.++|++..+|+++|.++..+|++++|+.+|.+|++++|++.. +.++|.+|..+|++++|+.+|++
T Consensus       105 -------------l~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1         105 -------------IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             -------------HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             -------------HHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                         4456666666666666666666666666666666666666666 66666666666666666666666


Q ss_pred             HHHHcCCCC
Q 038048          218 VKISAGNRQ  226 (575)
Q Consensus       218 ALel~P~n~  226 (575)
                      +++++|.+.
T Consensus       172 al~~~p~n~  180 (315)
T d2h6fa1         172 LLKEDVRNN  180 (315)
T ss_dssp             HHHHCTTCH
T ss_pred             HHHHCCccH
Confidence            666666553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1e-13  Score=130.43  Aligned_cols=120  Identities=18%  Similarity=0.134  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           70 PSRAVSLFWAAINAGD----RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        70 ~eeAi~lf~kAL~l~p----~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      .+.|+..+.+++...+    ....+++++|.+|..+|++++|+..+..                                
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~--------------------------------   62 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ--------------------------------   62 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------------------
Confidence            4567777777776533    2356899999999999999999998544                                


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048          146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN  224 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~  224 (575)
                           ++.++|+++.++++||.+|..+|++++|+.+|++|++++|++.. ++++|.+|..+|++++|+..|+++++++|.
T Consensus        63 -----al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          63 -----ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             -----HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -----hhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence                 35679999999999999999999999999999999999999999 999999999999999999999999999997


Q ss_pred             CC
Q 038048          225 RQ  226 (575)
Q Consensus       225 n~  226 (575)
                      +.
T Consensus       138 ~~  139 (259)
T d1xnfa_         138 DP  139 (259)
T ss_dssp             CH
T ss_pred             cH
Confidence            64

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-13  Score=127.69  Aligned_cols=127  Identities=16%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      .-+......+|+++|+..|.++   .+.++.++++||.+|..+|++++|++.+.+                         
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~k-------------------------   61 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR-------------------------   61 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHH-------------------------
Confidence            4467778899999999999863   555678999999999999999999998644                         


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------H-HHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------------K-QCNLAIC  201 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------------~-~~NLA~i  201 (575)
                                  ++.++|+++.+|+++|.+|.++|+|++|+..|++|+...+.+.                . ++|+|.+
T Consensus        62 ------------Al~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~  129 (192)
T d1hh8a_          62 ------------SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM  129 (192)
T ss_dssp             ------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred             ------------HHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHH
Confidence                        3567999999999999999999999999999999999866542                3 6799999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          202 LMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       202 y~~qGr~eEAi~lLekALel~P~n  225 (575)
                      |..+|++++|+..|++++.+.|+.
T Consensus       130 ~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         130 YAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999998863

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.8e-14  Score=128.90  Aligned_cols=102  Identities=24%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      +..+...|+.|.+.|+|++|+..+..                                     ++.++|.++.+|+++|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~k-------------------------------------al~~~p~~~~~~~~lg~   46 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGR-------------------------------------AITRNPLVAVYYTNRAL   46 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCCHHHHHhHHH
Confidence            45677899999999999999998644                                     35679999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +|..+|+|++|+.+|++||+++|++.. +++||.+|..+|++++|+..|+++++++|++.
T Consensus        47 ~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          47 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999 99999999999999999999999999998654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-13  Score=118.58  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      +...|..+...|+|++|+.++..                                     ++.++|+++.+|+++|.+|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~-------------------------------------al~~~p~~~~~~~~~a~~~~   48 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSE-------------------------------------AIKLDPHNHVLYSNRSAAYA   48 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHhcCCcchhhhhccccccc
Confidence            45689999999999999998544                                     35679999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .+|++++|+..|.++++++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        49 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          49 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             ccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999 99999999999999999999999999999865

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.3e-13  Score=120.46  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          154 VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       154 L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      ++|++..+|+++|.+|..+|++++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|++++.++|++
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          39 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            34444444444444444444444444444444444444444 4444444444444444444444444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-13  Score=116.80  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      .-+..++..|++++|+.+|.++|..+|.+..+++++|.+|..+|++++|+..+..                         
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------   62 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK-------------------------   62 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhh-------------------------
Confidence            3467778999999999999999999999999999999999999999999998533                         


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                                  ++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++. +.+++.+.
T Consensus        63 ------------al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          63 ------------TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             ------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ------------HHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence                        35679999999999999999999999999999999999999999 88888764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=8.9e-14  Score=126.45  Aligned_cols=119  Identities=9%  Similarity=0.099  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF  135 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~  135 (575)
                      .+...|..++..|++++|+.+|.+||.++|.++.+++++|.+|.++|++++|+..+..                      
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~----------------------   63 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR----------------------   63 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHH----------------------
Confidence            3556778889999999999999999999999999999999999999999999998533                      


Q ss_pred             HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHH
Q 038048          136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEA  211 (575)
                                     ++.++|++..+|++||.+|..+|+|++|+.+|++|++++|++.. +..++..+...++...+
T Consensus        64 ---------------al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  125 (201)
T d2c2la1          64 ---------------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  125 (201)
T ss_dssp             ---------------HTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred             ---------------HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence                           46789999999999999999999999999999999999998776 55555555544444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.2e-13  Score=118.57  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH--HHcCCHHHHHHHH
Q 038048          150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL--MHMNRVTEAKSLL  215 (575)
Q Consensus       150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy--~~qGr~eEAi~lL  215 (575)
                      .++.++|++..+++++|.+|..+|++++|+.+|++++.++|++.. ...++.+.  ...+.+++|+...
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            457889999999999999999999999999999999999999998 77776664  4445556665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=1.1e-12  Score=112.23  Aligned_cols=93  Identities=17%  Similarity=0.066  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      ..+++|.++.+.|++++|+..+..                                     ++.++|+++.+|++||.+|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~a~~~lg~~~   60 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEA-------------------------------------VCQKEPEREEAWRSLGLTQ   60 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhh-------------------------------------hcccccccchhhhhhhhhh
Confidence            357899999999999999998543                                     3567999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVK  219 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekAL  219 (575)
                      ..+|++++|+.+|++|++++|++.. +++||.+|..+|++++|+++|+++|
T Consensus        61 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          61 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999 9999999999999999999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=4.4e-12  Score=115.02  Aligned_cols=116  Identities=11%  Similarity=0.056  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      .+...|..+...|+|++|+..|..++.    .+.......                 .......++|....++.|+|.+|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~----~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLR----YVEGSRAAA-----------------EDADGAKLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHHHHS-----------------CHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hhhhhhhhh-----------------hhHHHHHhChhhHHHHHHHHHHH
Confidence            345689999999999999998655433    111111000                 00122455777788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++|+|++|+..|.+||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999 99999999999999999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-11  Score=123.11  Aligned_cols=124  Identities=10%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048           66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS  145 (575)
Q Consensus        66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s  145 (575)
                      ..+++++|+.+|.++|+.+|++..+++++|.++..+|++++|++.+..                                
T Consensus        90 l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~k--------------------------------  137 (315)
T d2h6fa1          90 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD--------------------------------  137 (315)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH--------------------------------
T ss_pred             hCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhh--------------------------------
Confidence            356799999999999999999999999999999999999999988433                                


Q ss_pred             hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC------HHHHHHHHHHH
Q 038048          146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR------VTEAKSLLQAV  218 (575)
Q Consensus       146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr------~eEAi~lLekA  218 (575)
                           ++.++|.+..+|+++|.+|..+|++++|+.+|+++|+++|.+.. ++++|.++...++      +++|+..+.++
T Consensus       138 -----al~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a  212 (315)
T d2h6fa1         138 -----ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  212 (315)
T ss_dssp             -----HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHH
Confidence                 35668888888888888888888888888888888888888888 8888888877776      57788888888


Q ss_pred             HHHcCCCC
Q 038048          219 KISAGNRQ  226 (575)
Q Consensus       219 Lel~P~n~  226 (575)
                      ++++|++.
T Consensus       213 l~~~P~~~  220 (315)
T d2h6fa1         213 IKLVPHNE  220 (315)
T ss_dssp             HHHSTTCH
T ss_pred             HHhCCCch
Confidence            88888764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.8e-11  Score=111.81  Aligned_cols=66  Identities=23%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +++|+|.+|+++|+|++|+.++++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            5677777777777777777777777777777777 77777777777777777777777777777654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-11  Score=107.87  Aligned_cols=113  Identities=11%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      ..+.++|..|...|+|++|+.++..+                                     +.++|++..+++++|.+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~a-------------------------------------l~~~p~~~~~~~~~a~~   47 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKA-------------------------------------KELDPTNMTYITNQAAV   47 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------HHhCcccHHHHHhHHHH
Confidence            35678999999999999999996553                                     56799999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK--------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQ  240 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~--------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~e  240 (575)
                      |..+|+|++|+..|++||+++|++..        ++++|.++..++++++|+.+|++++..++.    ......+..+..
T Consensus        48 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~----~~~~~~l~~~~k  123 (128)
T d1elra_          48 YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT----PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH
Confidence            99999999999999999999998764        456888899999999999999999998763    233444444444


Q ss_pred             HH
Q 038048          241 ML  242 (575)
Q Consensus       241 lL  242 (575)
                      .+
T Consensus       124 ~l  125 (128)
T d1elra_         124 IL  125 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=3.6e-11  Score=107.98  Aligned_cols=116  Identities=16%  Similarity=0.085  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY  169 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY  169 (575)
                      .+...|+.+...|+|++|+..|..+++.    +.........  ...               ....+-...++.|+|.+|
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~----~~~~~~~~~~--~~~---------------~~~~~~~~~~~~Nla~~~   77 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQ--ILL---------------DKKKNIEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCH--HHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcchhhhhhH--HHH---------------HhhhhHHHHHHhhHHHHH
Confidence            3556789999999999999887654431    1000000000  000               000111134889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999 99999999999999999999999999999865

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3e-11  Score=110.36  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH---HHHH-HHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCC
Q 038048           90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL---LQNK-LKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQE  157 (575)
Q Consensus        90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l---L~~~-L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd  157 (575)
                      .+...|..+..+|+|++|+..|..++......   .... ..........+.+++.++...|+        ..++.++|+
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~   94 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN   94 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence            34556777777777777777655444321000   0000 00000111234566666666666        457889999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH
Q 038048          158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK  212 (575)
Q Consensus       158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi  212 (575)
                      +..+++++|.+|..+|+|++|+.+|++|++++|++.. ...|+.++..+++..+..
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 889999988877777654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-11  Score=114.55  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048           91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM  170 (575)
Q Consensus        91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~  170 (575)
                      +++.|..+...|+|++|++.+..                                        +.+.++.+++|||.+|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~----------------------------------------i~~~~~~~~~nlG~~~~   47 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA----------------------------------------VQDPHSRICFNIGCMYT   47 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT----------------------------------------SSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh----------------------------------------cCCCCHHHHHHHHHHHH
Confidence            45789999999999999987432                                        34556789999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048          171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR  225 (575)
Q Consensus       171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n  225 (575)
                      .+|+|++|+.+|++||+++|+++. ++++|.+|..+|++++|+..|++++...+.+
T Consensus        48 ~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          48 ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999 9999999999999999999999999976654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=1.8e-11  Score=110.92  Aligned_cols=118  Identities=8%  Similarity=0.093  Sum_probs=100.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINA----------------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL  121 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l----------------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l  121 (575)
                      ...+...+..+++++|+..|.++|..                +|....++.++|.+|.++|+|++|+..+..        
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~--------  102 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE--------  102 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh--------
Confidence            34456677889999999999999853                334456789999999999999999997433        


Q ss_pred             HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048          122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI  200 (575)
Q Consensus       122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~  200 (575)
                                                   ++.++|+++.+|+++|.+|..+|++++|+..|++|++++|++.. ...|+.
T Consensus       103 -----------------------------al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1         103 -----------------------------ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             -----------------------------HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -----------------------------hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                         46789999999999999999999999999999999999999999 888999


Q ss_pred             HHHHcCCHHHHH
Q 038048          201 CLMHMNRVTEAK  212 (575)
Q Consensus       201 iy~~qGr~eEAi  212 (575)
                      ++.......++.
T Consensus       154 ~~~~l~~~~~~~  165 (169)
T d1ihga1         154 VKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988777666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=6.3e-12  Score=112.68  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=93.6

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      .+++|+..|++|++++|+++.+++++|.+|...+++..+.+.. +.+++++..+.                         
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~-~~~~~Ai~~~~-------------------------   65 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFE-------------------------   65 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHH-------------------------
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHH-------------------------
Confidence            4789999999999999999999999999999988887766542 22333333332                         


Q ss_pred             hhHHhhcCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHH
Q 038048          149 KIQITVEQEKSRILGNLAWAYMQQNN-----------FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       149 k~aL~L~Pd~~~a~~nLG~aY~~qGr-----------yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEA  211 (575)
                       .++.++|++..+|++||.+|..+|+           |++|+.+|++|++++|++.. +.+|+.+....+.+.++
T Consensus        66 -kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          66 -EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             -HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             -HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             3467899999999999999998865           79999999999999999999 88898887555444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.23  E-value=2.7e-11  Score=110.15  Aligned_cols=116  Identities=19%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048           89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA  168 (575)
Q Consensus        89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a  168 (575)
                      ..+...|+.+...|+|++|+..|..++..    +........                  .......+....++.|+|.+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~----~~~~~~~~~------------------~~~~~~~~~~~~~~~Nla~~   73 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW----LEMEYGLSE------------------KESKASESFLLAAFLNLAMC   73 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCH------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhhccch------------------hhhhhcchhHHHHHHhHHHH
Confidence            45667899999999999999997664432    111000000                  00011122224488999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      |..+|+|++|+.+|+++|.++|++.. ++++|.+|..+|++++|+..|++++.++|++.
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999 99999999999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=1e-10  Score=106.25  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDR---------------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~---------------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~  123 (575)
                      ..|..++..|++.+|+.+|.+||..-+.               ...++.|+|.+|..+|++++|+..+..          
T Consensus        20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~----------   89 (168)
T d1kt1a1          20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK----------   89 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhh----------
Confidence            3566778899999999999999974322               124678999999999999999998433          


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                                                 ++.++|++..+++++|.+|..+|+|++|+..|+++++++|++.. ...|+.+.
T Consensus        90 ---------------------------al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          90 ---------------------------ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             ---------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             ---------------------------hhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                       35679999999999999999999999999999999999999999 88899988


Q ss_pred             HHcCCHHH-HHHHHHHHHHH
Q 038048          203 MHMNRVTE-AKSLLQAVKIS  221 (575)
Q Consensus       203 ~~qGr~eE-Ai~lLekALel  221 (575)
                      ...+++.+ ....|.++++.
T Consensus       143 ~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhh
Confidence            77776654 55555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.4e-12  Score=109.81  Aligned_cols=98  Identities=7%  Similarity=0.071  Sum_probs=85.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048           92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ  171 (575)
Q Consensus        92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~  171 (575)
                      .+|++.+...+++++|++.|..                                     ++.++|++..+++|+|+++..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~-------------------------------------aL~~~p~~~~~~~n~a~~L~~   45 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQS-------------------------------------EKAAGSVSKSTQFEYAWCLVR   45 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHSCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH-------------------------------------HHhhCCCCHHHHHHHHHHHHH
Confidence            4678888899999999988644                                     356799999999999999987


Q ss_pred             c---CCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          172 Q---NNFEMAEQYYRKALSLGVDMN--K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       172 q---GryeEAe~~yrkALeidPdn~--~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .   +++++|+.+|++++.++|.+.  . +++||.+|..+|++++|+.+|+++|+++|++.
T Consensus        46 s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          46 TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            4   455679999999999998664  4 89999999999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.4e-11  Score=106.46  Aligned_cols=105  Identities=16%  Similarity=0.071  Sum_probs=85.9

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH---HHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSD---EAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGryd---EAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      .+-.+++++|++.|+++|..+|.+..+++++|.+|...++..   +|+.++..                           
T Consensus         9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~---------------------------   61 (122)
T d1nzna_           9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE---------------------------   61 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH---------------------------
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH---------------------------
Confidence            345678999999999999999999999999999998766554   56665322                           


Q ss_pred             HHHHHhchhhHHhhcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          141 KMARSQGKKIQITVEQEK--SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~--~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                                ++..+|.+  ..++++||.+|..+|+|++|+.+|+++|+++|++.. ...++.|....
T Consensus        62 ----------~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          62 ----------LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             ----------HTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ----------HHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence                      23344444  458999999999999999999999999999999998 77777776543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=7.7e-11  Score=105.76  Aligned_cols=110  Identities=16%  Similarity=0.152  Sum_probs=94.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCc----------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048           60 AKHIQLIDKDPSRAVSLFWAAINAGDRV----------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ  123 (575)
Q Consensus        60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~----------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~  123 (575)
                      .|..++..+++.+|+..|.+||..-+..                ..++.|+|.+|.++|++++|+..+..          
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~----------   92 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK----------   92 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc----------
Confidence            4566778999999999999999764432                24678999999999999999998543          


Q ss_pred             HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048          124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL  202 (575)
Q Consensus       124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy  202 (575)
                                                 ++.++|.+..+|+++|.+|..+|++++|+.+|+++++++|++.. ..+++.+.
T Consensus        93 ---------------------------al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          93 ---------------------------VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             ---------------------------HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ---------------------------cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                       35679999999999999999999999999999999999999999 88888877


Q ss_pred             HHcC
Q 038048          203 MHMN  206 (575)
Q Consensus       203 ~~qG  206 (575)
                      .+++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.5e-12  Score=135.29  Aligned_cols=71  Identities=18%  Similarity=-0.024  Sum_probs=65.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ++...++.+||.++..+|+|++|+.+|++|++++|++.. +++||.+|..+|++.+|+.+|.++|..+|..+
T Consensus       149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence            344578999999999999999999999999999999999 99999999999999999999999999988643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.17  E-value=6.9e-11  Score=100.80  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      +..+......|++++|+..|++++..+|++..++++||.+|...|++++|+.++..                        
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~------------------------   75 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH------------------------   75 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccc------------------------
Confidence            44567778899999999999999999999999999999999999999999998543                        


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL  186 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL  186 (575)
                                   ++.++|++..++++||.+|..+|++++|+++|++.|
T Consensus        76 -------------al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          76 -------------ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             -------------HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------ccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                         367799999999999999999999999999999986

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.5e-10  Score=112.95  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAG------DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI  129 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~------p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~  129 (575)
                      .|.+++.++...+++++|+..|.+|+.+.      +....++.++|.+|.++|++++|++++..+++.....-     ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~-----~~  113 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-----QF  113 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-----cc
Confidence            47788899999999999999999999862      22345799999999999999999999777665432210     00


Q ss_pred             HHHHHHHhHHHHHHHH-hch--------hhHHhh---c---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          130 EEGIAFAGVKTKMARS-QGK--------KIQITV---E---QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       130 ~~a~a~~~nla~al~s-qg~--------k~aL~L---~---Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      ......+.+++..+.. .++        ..++.+   .   +....++.++|.+|..+|+|++|+.+|++++.+.+.+..
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            1111222233333321 122        112222   1   123457999999999999999999999999999887752


Q ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          195 --------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       195 --------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                              +.++|.++...|+++.|...++++++++|...
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (290)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence                    46889999999999999999999999987543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=3.8e-12  Score=125.75  Aligned_cols=150  Identities=9%  Similarity=-0.157  Sum_probs=105.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      +......+.+++|+.+|++++..+|.+..+++++|.+|..+|++++|+..+...++...........             
T Consensus       151 ~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------  217 (334)
T d1dcea1         151 FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN-------------  217 (334)
T ss_dssp             HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH-------------
T ss_pred             HHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH-------------
Confidence            3344445555566666666666666655566666666666666665555544444432222111110             


Q ss_pred             HHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHH
Q 038048          141 KMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEA  211 (575)
Q Consensus       141 ~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEA  211 (575)
                        +...+.        ...+..+|....++.++|.++...|++.+|+..|.+++..+|++.. +.+||.+|..+|++++|
T Consensus       218 --~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         218 --AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             --HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred             --HHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHH
Confidence              000000        2345678888888899999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 038048          212 KSLLQAVKISAGNR  225 (575)
Q Consensus       212 i~lLekALel~P~n  225 (575)
                      +.+|+++++++|.+
T Consensus       296 ~~~~~~ai~ldP~~  309 (334)
T d1dcea1         296 LQYFSTLKAVDPMR  309 (334)
T ss_dssp             HHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHCccc
Confidence            99999999999964

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=4.4e-11  Score=107.07  Aligned_cols=76  Identities=8%  Similarity=0.021  Sum_probs=68.6

Q ss_pred             HHhhcCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC-----------H
Q 038048          151 QITVEQEKSRILGNLAWAYMQQ----------NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR-----------V  208 (575)
Q Consensus       151 aL~L~Pd~~~a~~nLG~aY~~q----------GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr-----------~  208 (575)
                      ++.++|+++.+++++|.+|..+          +.+++|+..|++||+++|++.. +++||.+|..+|+           +
T Consensus        23 al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~  102 (145)
T d1zu2a1          23 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF  102 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhH
Confidence            4678999999999999999854          5568999999999999999999 9999999998875           6


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 038048          209 TEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       209 eEAi~lLekALel~P~n~  226 (575)
                      ++|+.+|+++++++|++.
T Consensus       103 ~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1         103 DLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhhhhcccccCCCHH
Confidence            999999999999999754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.06  E-value=4.5e-10  Score=100.50  Aligned_cols=114  Identities=18%  Similarity=0.021  Sum_probs=83.7

Q ss_pred             HHHHHH--HHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048           89 SALKDM--AVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA  166 (575)
Q Consensus        89 ~Al~nL--A~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG  166 (575)
                      .++..|  |..++..|+|++|+..|..+++.......                         .......+....+|+|+|
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~-------------------------~~~~~~~~~~a~~~~nlg   62 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-------------------------EEAFDHAGFDAFCHAGLA   62 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-------------------------TSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh-------------------------hhhcccchhHHHHHHHHH
Confidence            344444  88999999999999997665442111000                         000000112245899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-------C----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048          167 WAYMQQNNFEMAEQYYRKALSLGVD-------M----NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM  227 (575)
Q Consensus       167 ~aY~~qGryeEAe~~yrkALeidPd-------n----~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~  227 (575)
                      .+|..+|+|++|+..|+++|++.|.       .    .. ++++|.+|..+|++++|+..|++++++.|+..+
T Consensus        63 ~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          63 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            9999999999999999999987542       1    22 679999999999999999999999999886653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=4e-09  Score=99.24  Aligned_cols=50  Identities=14%  Similarity=0.066  Sum_probs=36.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHH
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDMAVVMKQLDRSDEAIEAR  111 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nLA~iy~qqGrydEAie~~  111 (575)
                      .+++..|++++|+.+|++++...|..     ..++..+|.+|..+|++++|+..+
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~   74 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM   74 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44567778888888888888777664     236777788888888888887773

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-09  Score=95.02  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048           59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV  138 (575)
Q Consensus        59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n  138 (575)
                      ..|..++..+++++|+.+|.++|.++|.+..+++++|.+|.++|+|++|+..+..+++.......               
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~---------------   73 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE---------------   73 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH---------------
Confidence            45677889999999999999999999999999999999999999999999986554432111000               


Q ss_pred             HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 038048          139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQ  195 (575)
Q Consensus       139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~  195 (575)
                                     .......++.++|.++..++++++|+.+|++++..+++....
T Consensus        74 ---------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~  115 (128)
T d1elra_          74 ---------------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL  115 (128)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Confidence                           001113488999999999999999999999999998865433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=88.97  Aligned_cols=67  Identities=12%  Similarity=-0.001  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      +-+++||.++.++|+|++|+.+|++|+++.|.+       .. +.|||.+|..+|++++|+.+|+++|+++|++.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            457899999999999999999999999997654       34 78999999999999999999999999999865

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=7.3e-09  Score=101.69  Aligned_cols=146  Identities=7%  Similarity=-0.029  Sum_probs=101.6

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      ..++|+.+|.++|..+|++..+|+..+.++..++....... ..+.+++++..+...+...+.....+..++.++...++
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~-~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEE-SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHH-HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            35899999999999999999998887777666554322211 11223333334444443333333444444444433332


Q ss_pred             ----------hhHHhhcCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048          149 ----------KIQITVEQEKSRIL-GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL  215 (575)
Q Consensus       149 ----------k~aL~L~Pd~~~a~-~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lL  215 (575)
                                ..++.++|....++ ..+|.++...|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+..+
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                      34677899888875 56789999999999999999999999999999 999999999998876553333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.91  E-value=2.2e-09  Score=95.91  Aligned_cols=107  Identities=12%  Similarity=0.028  Sum_probs=80.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048           61 KHIQLIDKDPSRAVSLFWAAINAGDRV------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN  128 (575)
Q Consensus        61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l  128 (575)
                      +..++..|++++|+..|++||++.++.            ..++.++|.+|..+|++++|+..+..++..    .......
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~----~~~~~~~   91 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----FNRRGEL   91 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc----ccccccc
Confidence            566778899999999999999987653            357899999999999999999985554331    1111100


Q ss_pred             hHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048          129 IEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN  193 (575)
Q Consensus       129 ~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~  193 (575)
                      .                      ....+....+++++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        92 ~----------------------~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          92 N----------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             T----------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             c----------------------ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            0                      000112234889999999999999999999999999976543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.2e-09  Score=86.66  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048           88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW  167 (575)
Q Consensus        88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~  167 (575)
                      ++..+.||.++.++|+|++|+..+..+++...    .                          .....++...++++||.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~----~--------------------------~~~~~~~~~~~l~~Lg~   54 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLD----E--------------------------GEISTIDKVSVLDYLSY   54 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----T--------------------------TCCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh----h--------------------------hhccCccHHHHHHHHhh
Confidence            34577999999999999999998655432100    0                          01113344679999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048          168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM  205 (575)
Q Consensus       168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q  205 (575)
                      +|.++|++++|+.+|++||+++|++.. ..||+.+...+
T Consensus        55 ~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 99998776544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.3e-08  Score=97.19  Aligned_cols=139  Identities=14%  Similarity=-0.005  Sum_probs=98.1

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048           69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK  148 (575)
Q Consensus        69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~  148 (575)
                      ++++|..+|.+              .|.+|..+|+|++|++++.++++.....-     ........+.+++.++...|+
T Consensus        32 ~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~-----~~~~~a~~~~~~g~~y~~~~~   92 (290)
T d1qqea_          32 KFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQKKAG-----NEDEAGNTYVEAYKCFKSGGN   92 (290)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHhCC
Confidence            35666666654              58899999999999999877766432211     111122345555666655555


Q ss_pred             --------hhHHhhcCCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcC
Q 038048          149 --------KIQITVEQEK------SRILGNLAWAYMQ-QNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMN  206 (575)
Q Consensus       149 --------k~aL~L~Pd~------~~a~~nLG~aY~~-qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qG  206 (575)
                              ..++.+.+..      ..++.++|.+|.. .|++++|+.+|++|+++.+..      .. +.++|.+|..+|
T Consensus        93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_          93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence                    1223332211      4588999998866 699999999999999885432      22 678999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCCC
Q 038048          207 RVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       207 r~eEAi~lLekALel~P~n~  226 (575)
                      +|++|+.+|++++...+.+.
T Consensus       173 ~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         173 QYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             CHHHHHHHHHHHHHTTSSCT
T ss_pred             hHHHHHHHHHHHHHhCccch
Confidence            99999999999999988764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.75  E-value=6.1e-07  Score=84.50  Aligned_cols=163  Identities=14%  Similarity=0.041  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcC-----------------
Q 038048           56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGR-----------------  114 (575)
Q Consensus        56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~ga-----------------  114 (575)
                      .++..+.....++|+++|+.+|++|.+.+  +..++++||.+|..    ..++..|..++..+                 
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~   81 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY   81 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence            34566777788999999999999998764  57889999999998    66788887772222                 


Q ss_pred             --------HHHHHHHHHHHHHhh----------------------H------------HHHHHHhHHHHHHHHhch----
Q 038048          115 --------IEEEIELLQNKLKNI----------------------E------------EGIAFAGVKTKMARSQGK----  148 (575)
Q Consensus       115 --------LeeAi~lL~~~L~l~----------------------~------------~a~a~~~nla~al~sqg~----  148 (575)
                              .+.+...+......-                      .            ........++..+.....    
T Consensus        82 ~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  161 (265)
T d1ouva_          82 SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKD  161 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccc
Confidence                    122222222221100                      0            000011222222222110    


Q ss_pred             ------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHH
Q 038048          149 ------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKS  213 (575)
Q Consensus       149 ------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~  213 (575)
                            ......+..+..++++||.+|..    ..++++|+.+|++|.+.  +++. .++||.+|..    ..++++|+.
T Consensus       162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~  239 (265)
T d1ouva_         162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIE  239 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred             cccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence                  01233366788899999999888    77899999999999887  4666 8999999986    458999999


Q ss_pred             HHHHHHHHc
Q 038048          214 LLQAVKISA  222 (575)
Q Consensus       214 lLekALel~  222 (575)
                      +|+++....
T Consensus       240 ~~~kAa~~g  248 (265)
T d1ouva_         240 NFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHCc
Confidence            999998864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=7e-09  Score=102.03  Aligned_cols=126  Identities=13%  Similarity=-0.040  Sum_probs=108.7

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048           64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA  143 (575)
Q Consensus        64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al  143 (575)
                      .+.+|++++|+..|+++++.+|++..++.+||.+|...|++++|+..+..                              
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~------------------------------   55 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ------------------------------   55 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH------------------------------
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------------------------
Confidence            46689999999999999999999999999999999999999999987433                              


Q ss_pred             HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048          144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS  221 (575)
Q Consensus       144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel  221 (575)
                             ++.++|+...++.+++.++...+..+++...+.++..+ .|+... ...++.++...|++++|+.+++++++.
T Consensus        56 -------a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          56 -------SIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             -------HHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -------HHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                   35678999999999999999888888887766665444 344445 778899999999999999999999999


Q ss_pred             cCCCC
Q 038048          222 AGNRQ  226 (575)
Q Consensus       222 ~P~n~  226 (575)
                      .|...
T Consensus       129 ~p~~~  133 (264)
T d1zbpa1         129 RQEKG  133 (264)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3e-08  Score=104.54  Aligned_cols=128  Identities=9%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .+.++.|+..|.+++.++|....+++++|.++.+.|++++|+..+..++.....             ..+.+++.+++..
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------~~~~~LG~l~~~~  165 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-------------HCLVHLGDIARYR  165 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHHHHHH-------------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-------------HHHHHHHHHHHHc
Confidence            345666666677777788888889999999999999999999886554432211             1223344444444


Q ss_pred             ch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048          147 GK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR  207 (575)
Q Consensus       147 g~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr  207 (575)
                      ++        .+++.++|++..+|++||.+|..+|++.+|+.+|.+||.++|.++. +.||+.+|.+..+
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            44        4678999999999999999999999999999999999999999999 9999999876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=2.1e-07  Score=85.95  Aligned_cols=68  Identities=12%  Similarity=-0.074  Sum_probs=62.3

Q ss_pred             cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048          155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA  222 (575)
Q Consensus       155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~  222 (575)
                      .+....++.+++.++..+|++++|+.+++++++++|.+.. +.+|+.+|..+|++++|+..|+++...-
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3444568999999999999999999999999999999999 9999999999999999999999986653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=1e-06  Score=85.71  Aligned_cols=148  Identities=13%  Similarity=-0.014  Sum_probs=105.1

Q ss_pred             ChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048           69 DPSRAVSLFWAAINA-GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG  147 (575)
Q Consensus        69 d~eeAi~lf~kAL~l-~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg  147 (575)
                      ..++|...|.+|+.. .|.....+..++.++..+|++++|+.++...+.......          ...+..++......+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~----------~~~w~~~~~~~~~~~  148 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP----------TLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT----------HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHHcC
Confidence            456778888888864 566677777788888888888888877544332110000          000111111111111


Q ss_pred             h--------hhHHhhcCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048          148 K--------KIQITVEQEKSRILGNLAWAYM-QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA  217 (575)
Q Consensus       148 ~--------k~aL~L~Pd~~~a~~nLG~aY~-~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek  217 (575)
                      .        ..++...|.....+...|.... ..|+.+.|..+|++++...|++.. +..++..+..+|+++.|..+|++
T Consensus       149 ~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~  228 (308)
T d2onda1         149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            1        2356678888888888887654 468999999999999999999999 99999999999999999999999


Q ss_pred             HHHHcCCCC
Q 038048          218 VKISAGNRQ  226 (575)
Q Consensus       218 ALel~P~n~  226 (575)
                      ++...|.++
T Consensus       229 ai~~~~~~~  237 (308)
T d2onda1         229 VLTSGSLPP  237 (308)
T ss_dssp             HHHSSSSCG
T ss_pred             HHHhCCCCh
Confidence            999877554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.7e-06  Score=79.35  Aligned_cols=97  Identities=15%  Similarity=0.047  Sum_probs=54.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048           62 HIQLIDKDPSRAVSLFWAAINAGDRV----DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG  137 (575)
Q Consensus        62 ~l~l~~kd~eeAi~lf~kAL~l~p~~----~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~  137 (575)
                      .+....+++++|..++++++...+..    ...+.++|.+|...|++++|+.++..++....                  
T Consensus       221 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------  282 (366)
T d1hz4a_         221 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR------------------  282 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh------------------
Confidence            33445566666666666666554432    23455666666667776666666333211100                  


Q ss_pred             HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048          138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG  189 (575)
Q Consensus       138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid  189 (575)
                                   .....|....++..+|.+|..+|++++|+.+|++|+++.
T Consensus       283 -------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         283 -------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             -------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             -------------hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                         011233334466667777777777777777777776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=4.4e-06  Score=81.11  Aligned_cols=104  Identities=8%  Similarity=-0.002  Sum_probs=78.0

Q ss_pred             hHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HcCCHHHHHHHHHHHHHHcCCCC
Q 038048          150 IQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM-HMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       150 ~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~-~qGr~eEAi~lLekALel~P~n~  226 (575)
                      .++...|.+. .+|..++..+...|++++|..+|.+|++..|.... +...|.... ..|+.+.|..+|++++...|++.
T Consensus       124 ~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         124 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            3466677654 57899999999999999999999999999999998 888888755 46899999999999999999864


Q ss_pred             CCh-hH------HHHHHHHHHHHHHhccccccCc
Q 038048          227 MDT-SY------SRSFERAIQMLTELESPSVLKL  253 (575)
Q Consensus       227 ~~~-~~------l~slerA~elL~ele~al~~~p  253 (575)
                      ..- .+      ....++|+.++..+-......|
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            210 01      1224556666666544443333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=9.9e-06  Score=69.91  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048           67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ  146 (575)
Q Consensus        67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq  146 (575)
                      .+|+++|+.+|+++.+.+.  ..++++||..  ...++++|+.++..                                 
T Consensus         6 ~kd~~~A~~~~~kaa~~g~--~~a~~~l~~~--~~~~~~~a~~~~~~---------------------------------   48 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE--MFGCLSLVSN--SQINKQKLFQYLSK---------------------------------   48 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTHHHHHHTC--TTSCHHHHHHHHHH---------------------------------
T ss_pred             ccCHHHHHHHHHHHHHCCC--hhhhhhhccc--cccCHHHHHHHHhh---------------------------------
Confidence            3588999999999998864  4566777643  34566666665322                                 


Q ss_pred             chhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHH
Q 038048          147 GKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQA  217 (575)
Q Consensus       147 g~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLek  217 (575)
                            ..+..++.++++||.+|..    ..++++|+.+|+++.+.  .++. .++||.+|..    ..++++|+.+|++
T Consensus        49 ------aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~  120 (133)
T d1klxa_          49 ------ACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  120 (133)
T ss_dssp             ------HHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             ------hhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence                  1234567799999999987    67899999999999875  5677 9999999987    5789999999999


Q ss_pred             HHHH
Q 038048          218 VKIS  221 (575)
Q Consensus       218 ALel  221 (575)
                      +.+.
T Consensus       121 Aa~~  124 (133)
T d1klxa_         121 ACRL  124 (133)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9885

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=2.3e-05  Score=68.79  Aligned_cols=68  Identities=13%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048          159 SRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMN-K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ  226 (575)
Q Consensus       159 ~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~-~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~  226 (575)
                      ..+.++.|+++.+-   .+.++|+.+|++++..+|.+. . +++||.+|.++|+|++|..+++++|+++|++.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            46889999999866   455799999999999999886 4 89999999999999999999999999999875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.78  E-value=1.6e-05  Score=77.51  Aligned_cols=63  Identities=10%  Similarity=0.066  Sum_probs=44.6

Q ss_pred             HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048          152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL  214 (575)
Q Consensus       152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l  214 (575)
                      +..+|++..++.+||.+|+.+|++++|+..|+++++++|++.. ..+++.++...+..+++...
T Consensus        23 l~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1          23 IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            4567777777777777777777777777777777777777777 66777777666655555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=0.00086  Score=62.18  Aligned_cols=28  Identities=7%  Similarity=-0.122  Sum_probs=24.3

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048           87 VDSALKDMAVVMKQLDRSDEAIEARSGR  114 (575)
Q Consensus        87 ~~~Al~nLA~iy~qqGrydEAie~~~ga  114 (575)
                      ++.++++||..+.+.+++++|++++.++
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kA   28 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKA   28 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3678999999999999999999986554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=0.00037  Score=63.45  Aligned_cols=67  Identities=15%  Similarity=0.013  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------H-HHHHHHHHHHcCCHHHHHHHHH
Q 038048          160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------------------K-QCNLAICLMHMNRVTEAKSLLQ  216 (575)
Q Consensus       160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------------------~-~~NLA~iy~~qGr~eEAi~lLe  216 (575)
                      ..+.+.|..+...|++++|+..|.+||++.++..                      . +.++|.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4788999999999999999999999999987553                      2 3589999999999999999999


Q ss_pred             HHHHHcCCCC
Q 038048          217 AVKISAGNRQ  226 (575)
Q Consensus       217 kALel~P~n~  226 (575)
                      +++..+|.+.
T Consensus        92 ~al~~~P~~e  101 (179)
T d2ff4a2          92 ALTFEHPYRE  101 (179)
T ss_dssp             HHHHHSTTCH
T ss_pred             HHHHhCCccH
Confidence            9999999763

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.0069  Score=52.56  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=36.6

Q ss_pred             cCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048          155 EQEK-SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK  194 (575)
Q Consensus       155 ~Pd~-~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~  194 (575)
                      +|.. -+.+++||.+|.++|+|++|..+++++|+++|+|..
T Consensus        68 ~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          68 AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            5544 469999999999999999999999999999999997

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.0069  Score=51.31  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=67.2

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048           65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT  140 (575)
Q Consensus        65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla  140 (575)
                      ....+.++|+.+|+++.+.  +++.+.+.||.+|..    ..++++|+.++..+                          
T Consensus        34 ~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~a--------------------------   85 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA--------------------------   85 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH--------------------------
T ss_pred             ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhh--------------------------
Confidence            3457899999999999876  467899999999987    45677777764332                          


Q ss_pred             HHHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 038048          141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGV  190 (575)
Q Consensus       141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidP  190 (575)
                                   .+..++.++++||.+|..    ..++.+|+.+|++|.+...
T Consensus        86 -------------a~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          86 -------------CGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             -------------HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             -------------hccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence                         234567799999999998    5799999999999987653