Citrus Sinensis ID: 038058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Secondary Structure (PSIPRED)
cEEEEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEcccccccccEEEEEEEEEccccccccccHHHEEEEEEEEEEcccccEEEEEEEEEEEEccccccEEEEEcccccccccEEEEEccccccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccEEEEEEEEEEEccccccccccEEEEEcccccccccccEEEEEccccccccccccccccEEEEEEEEccccccEEEEEEEEEEEccccccEEEEEccccHHHHHccccEEcccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mlvsesqsvsaTRKISKYQKPRKQFVLYYHdnllldpddvanstsakvtsgtklgnyefGMVVvfndpvtkdqsfqspeaataqGFYFYNMKNDYSAWFAYTLVFNSseykgtlnimgadlmpektrdlsvvggtgdffmARGIATFTTDAVEGIKYFRLKMDIKLYECY
Flexible Loop (DISEMBL)
mlvsesqsvsatrkiskyqkprKQFVLYYHDNLLLDPDDVANSTSAKVtsgtklgnyEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMArgiatfttdavegikyfrlkmdikLYECY
Low Complexity Region (SEG)
MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Disordered region (IsUnstruct)
**********************KQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTK********AATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYEC*
Disordered Region (DISOPRED)
MLV**********************VLYYHDNLLLDPDDVANSTSA*VTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Disordered Region (DISEMBL)
****************KYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Disordered Region (DISPRO)
MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
P13240	184	Disease resistance respon	N/A	no	0.976	0.902	0.477	1e-38

>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 10/176 (5%)

Query: 1   MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKV-----TSGTKLG 55
           ML + S ++   RK     KP K  V Y+HD +L +  + AN+TSA V      S TKL 
Sbjct: 13  MLFALSSAIPNKRKP---YKPCKNLVFYFHD-ILYNGKNAANATSAIVAAPEGVSLTKLA 68

Query: 56  -NYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTL 114
               FG ++VF+DP+T   S  S +   AQGFY Y+ KN Y++W ++T V NS+ ++GT+
Sbjct: 69  PQSHFGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTI 128

Query: 115 NIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
              GAD +  KTRD+SV GGTGDFFM RGIAT TTDA EG  YFRL + IK +EC+
Sbjct: 129 TFAGADPIVAKTRDISVTGGTGDFFMHRGIATITTDAFEGEAYFRLGVYIKFFECW 184

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
15222633	182	Disease resistance-responsive (dirigent-	0.964	0.901	0.674	2e-58
297840071	182	disease resistance-responsive family pro	0.964	0.901	0.668	3e-58
297799618	187	disease resistance-responsive family pro	0.952	0.866	0.662	3e-56
224075048	162	predicted protein [Populus trichocarpa]	0.952	1.0	0.662	2e-55
186701231	187	disease resistance-responsive family pro	0.952	0.866	0.638	3e-55
186701210	187	putative disease resistance protein [Ara	0.952	0.866	0.644	7e-55
15236570	187	disease resistance-responsive, dirigent	0.952	0.866	0.638	1e-54
157849648	187	disease resistance response protein [Bra	0.952	0.866	0.625	3e-54
15237092	184	disease resistance-responsive, dirigent	0.994	0.918	0.511	5e-44
15237088	184	disease resistance-responsive, dirigent	0.994	0.918	0.517	7e-44

>gi|15222633|ref|NP_176598.1| Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana] gi|6692115|gb|AAF24580.1|AC007764_22 F22C12.8 [Arabidopsis thaliana] gi|34365595|gb|AAQ65109.1| At1g64160 [Arabidopsis thaliana] gi|51968652|dbj|BAD43018.1| putative dirigent protein [Arabidopsis thaliana] gi|51971673|dbj|BAD44501.1| putative dirigent protein [Arabidopsis thaliana] gi|332196082|gb|AEE34203.1| Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 137/166 (82%), Gaps = 2/166 (1%)

Query: 6   SQSVSATRKISKYQ-KPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVV 64
           +++V + RK SK Q KP K FVLYYHD ++   DDV N+TSA VT+   LGN++FG +V+
Sbjct: 18  TKTVISARKPSKSQPKPCKNFVLYYHD-IMFGVDDVQNATSAAVTNPPGLGNFKFGKLVI 76

Query: 65  FNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPE 124
           F+DP+T D++FQS   A AQGFYFY+MKNDY+AWFAYTLVFNS+++KGTLNIMGADLM  
Sbjct: 77  FDDPMTIDKNFQSEPVARAQGFYFYDMKNDYNAWFAYTLVFNSTQHKGTLNIMGADLMMV 136

Query: 125 KTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           ++RDLSVVGGTGDFFM+RGI TF TD  EG KYFR+KMDIKLYECY
Sbjct: 137 QSRDLSVVGGTGDFFMSRGIVTFETDTFEGAKYFRVKMDIKLYECY 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840071|ref|XP_002887917.1| disease resistance-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297333758|gb|EFH64176.1| disease resistance-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 137/166 (82%), Gaps = 2/166 (1%)

Query: 6   SQSVSATRKISKYQ-KPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVV 64
           S++V + RK SK Q KP K FVLYYHD ++   DDV N+TSA +T+   LGN++FG +V+
Sbjct: 18  SKTVISARKPSKSQPKPCKNFVLYYHD-IMFGVDDVQNATSAAITNPPGLGNFKFGKLVI 76

Query: 65  FNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPE 124
           F+DP+T D++FQS   A AQGFYFY+MKNDY+AWFAYTLVFNS+++KGTLNIMGADLM  
Sbjct: 77  FDDPMTIDKNFQSEPVARAQGFYFYDMKNDYNAWFAYTLVFNSTQHKGTLNIMGADLMMV 136

Query: 125 KTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           ++RDLSVVGGTGDFFM+RGI TF TD  EG KYFR+KMDIKLY+CY
Sbjct: 137 QSRDLSVVGGTGDFFMSRGIVTFETDTFEGAKYFRVKMDIKLYDCY 182

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799618|ref|XP_002867693.1| disease resistance-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297313529|gb|EFH43952.1| disease resistance-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           +V + RK    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F+D
Sbjct: 26  TVLSFRKTLDPKKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDD 84

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+T D+++ S   A AQGFYFY+MK D++AWF YTLVFNSSEYKGTLNIMGADLM E TR
Sbjct: 85  PITTDKNYLSKPLARAQGFYFYDMKMDFNAWFCYTLVFNSSEYKGTLNIMGADLMMEPTR 144

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           DLSVVGGTGDFFMARGIATF TD  +G KYFR+KMDIKLYECY
Sbjct: 145 DLSVVGGTGDFFMARGIATFVTDIFQGAKYFRVKMDIKLYECY 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075048|ref|XP_002304535.1| predicted protein [Populus trichocarpa] gi|222841967|gb|EEE79514.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           SVS+ +K  K ++P K  VLYYHD L  +  DVAN+TSA  T  TKLGN++FGM+VVF+D
Sbjct: 1   SVSSAKKSFKPKQPCKDLVLYYHDTLF-NGTDVANATSAAATDPTKLGNFKFGMLVVFDD 59

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+TKD    S   A AQGFYFY+ K+ Y+AWFA+TL+FNS+++KGTLNIMGADLM E+TR
Sbjct: 60  PMTKDNHLLSRPVARAQGFYFYDKKSTYTAWFAFTLIFNSTKHKGTLNIMGADLMTEETR 119

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           D SVVGGTGDFFMARGIAT  TD  +G  YFRLKMDIKLYECY
Sbjct: 120 DFSVVGGTGDFFMARGIATIHTDTFQGDYYFRLKMDIKLYECY 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186701231|gb|ACC91257.1| disease resistance-responsive family protein [Capsella rubella]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           +V  +R+    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F+D
Sbjct: 26  TVFGSRRTLDQKKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDD 84

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+T D+++ S   A AQGFYFY+MK D++AWF YTLVFNS+++KGTLNIMGADLM E TR
Sbjct: 85  PITMDKNYLSEPVARAQGFYFYDMKMDFNAWFCYTLVFNSTQHKGTLNIMGADLMMEPTR 144

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           DLSVVGGTGDFFMARGIATF TD  +G KYFR+KMDIKLYECY
Sbjct: 145 DLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY 187

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186701210|gb|ACC91237.1| putative disease resistance protein [Arabidopsis halleri]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           +V + RK    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F+ 
Sbjct: 26  TVLSFRKTIDQKKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDG 84

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+T D+++ S   A AQGFYFY+MK D++AWF YTLVFNS+E+KGTLNIMGADLM E TR
Sbjct: 85  PITMDKNYLSKPLARAQGFYFYDMKMDFNAWFCYTLVFNSTEHKGTLNIMGADLMMEPTR 144

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           DLSVVGGTGDFFMARGIATF TD  +G KYFR+KMDIKLYECY
Sbjct: 145 DLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY 187

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236570|ref|NP_194100.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana] gi|4454038|emb|CAA23035.1| putative disease resistance response protein [Arabidopsis thaliana] gi|7269217|emb|CAB79324.1| putative disease resistance response protein [Arabidopsis thaliana] gi|21594041|gb|AAM65959.1| putative disease resistance response protein [Arabidopsis thaliana] gi|27311667|gb|AAO00799.1| putative disease resistance response protein [Arabidopsis thaliana] gi|332659395|gb|AEE84795.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           +V + RK    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F+ 
Sbjct: 26  TVLSFRKTIDQKKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDG 84

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+T D+++ S   A AQGFYFY+MK D+++WF+YTLVFNS+E+KGTLNIMGADLM E TR
Sbjct: 85  PITMDKNYLSKPVARAQGFYFYDMKMDFNSWFSYTLVFNSTEHKGTLNIMGADLMMEPTR 144

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           DLSVVGGTGDFFMARGIATF TD  +G KYFR+KMDIKLYECY
Sbjct: 145 DLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849648|gb|ABV89607.1| disease resistance response protein [Brassica rapa]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 8   SVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFND 67
           +V + RK    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F+ 
Sbjct: 26  TVYSFRKTLDQRKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDG 84

Query: 68  PVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTR 127
           P+T D+++ S   A AQGFYFY+MK D+++WF++TLVFNS+E+KGTLNIMGADLM E TR
Sbjct: 85  PITMDKNYLSEPVARAQGFYFYDMKTDFNSWFSFTLVFNSTEHKGTLNIMGADLMMEPTR 144

Query: 128 DLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
           DLSVVGGTGDFFMARGIATF TD  +G +YFR+KMDIKLYECY
Sbjct: 145 DLSVVGGTGDFFMARGIATFVTDLFQGARYFRVKMDIKLYECY 187

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237092|ref|NP_192860.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana] gi|4850300|emb|CAB43056.1| putative disease resistance response protein [Arabidopsis thaliana] gi|7267820|emb|CAB81222.1| putative disease resistance response protein [Arabidopsis thaliana] gi|332657584|gb|AEE82984.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 119/170 (70%), Gaps = 1/170 (0%)

Query: 1   MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
           +L+ +S +VS+ +K     KP K+FVL+ HD +  D D+ AN+TSA + +   LG++ FG
Sbjct: 15  VLLCQSYTVSSFQKSLDLAKPCKRFVLHLHD-IAYDGDNAANATSAAIVNPLGLGDFSFG 73

Query: 61  MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGAD 120
             V+ +DPVT DQ++ S   A  QGF+ Y+ K  Y AW A+T+VFNS+++KG   IMG +
Sbjct: 74  KFVIMDDPVTMDQNYLSKPVARVQGFFCYHGKATYDAWIAWTVVFNSTQHKGAFTIMGEN 133

Query: 121 LMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
              E TRDL +VGGTGDF M RGIAT TTD ++G KYFR+K+DIKLYECY
Sbjct: 134 PFMEPTRDLPIVGGTGDFIMTRGIATLTTDHIDGSKYFRVKLDIKLYECY 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237088|ref|NP_192858.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana] gi|4850298|emb|CAB43054.1| putative disease resistance response protein [Arabidopsis thaliana] gi|7267818|emb|CAB81220.1| putative disease resistance response protein [Arabidopsis thaliana] gi|32815935|gb|AAP88352.1| At4g11190 [Arabidopsis thaliana] gi|332657583|gb|AEE82983.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 1   MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
           +L+ +S +V + R+     KP K+FV Y H N+  D D+  N+TSA + +   LG++ FG
Sbjct: 15  VLLYQSTTVLSFRQPFNLAKPCKRFVFYLH-NVAYDGDNTDNATSAAIVNPLGLGDFSFG 73

Query: 61  MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGAD 120
             V+ ++PVT DQ+  S + A  QGF+FY+ K  Y  W ++++VFNS+++KG LNIMG +
Sbjct: 74  KFVIMDNPVTMDQNMLSEQVARVQGFFFYHGKTKYDTWLSWSVVFNSTQHKGALNIMGEN 133

Query: 121 LMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
              E TRDL VVGGTGDF M RGIATF TD VEG KYFR+KMDIKLYECY
Sbjct: 134 AFMEPTRDLPVVGGTGDFVMTRGIATFMTDLVEGSKYFRVKMDIKLYECY 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2024593	182	DIR5 "dirigent protein 5" [Ara	0.964	0.901	0.674	7.5e-57
TAIR|locus:2128469	187	DIR6 "dirigent protein 6" [Ara	0.964	0.877	0.636	1.1e-53
TAIR|locus:2136128	184	AT4G11190 "AT4G11190" [Arabido	0.994	0.918	0.517	2.8e-43
TAIR|locus:2136143	184	AT4G11210 "AT4G11210" [Arabido	0.994	0.918	0.511	3.5e-43
TAIR|locus:2136118	185	DP1 "AT4G11180" [Arabidopsis t	0.994	0.913	0.520	4.5e-43
TAIR|locus:2162361	185	AT5G42500 "AT5G42500" [Arabido	0.876	0.805	0.307	5.4e-15
TAIR|locus:2162366	182	AT5G42510 "AT5G42510" [Arabido	0.852	0.796	0.320	7.9e-14
TAIR|locus:2009769	189	AT1G65870 "AT1G65870" [Arabido	0.841	0.756	0.309	1.3e-11
TAIR|locus:2017689	193	AT1G22900 "AT1G22900" [Arabido	0.876	0.772	0.307	3.5e-11
TAIR|locus:2047002	187	AT2G21100 "AT2G21100" [Arabido	0.694	0.631	0.317	5.2e-10

TAIR|locus:2024593 DIR5 "dirigent protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 112/166 (67%), Positives = 137/166 (82%)

Query:     6 SQSVSATRKISKYQ-KPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVV 64
             +++V + RK SK Q KP K FVLYYHD ++   DDV N+TSA VT+   LGN++FG +V+
Sbjct:    18 TKTVISARKPSKSQPKPCKNFVLYYHD-IMFGVDDVQNATSAAVTNPPGLGNFKFGKLVI 76

Query:    65 FNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPE 124
             F+DP+T D++FQS   A AQGFYFY+MKNDY+AWFAYTLVFNS+++KGTLNIMGADLM  
Sbjct:    77 FDDPMTIDKNFQSEPVARAQGFYFYDMKNDYNAWFAYTLVFNSTQHKGTLNIMGADLMMV 136

Query:   125 KTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
             ++RDLSVVGGTGDFFM+RGI TF TD  EG KYFR+KMDIKLYECY
Sbjct:   137 QSRDLSVVGGTGDFFMSRGIVTFETDTFEGAKYFRVKMDIKLYECY 182

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0042349 "guiding stereospecific synthesis activity" evidence=IDA

GO:1901599 "(-)-pinoresinol biosynthetic process" evidence=IDA

TAIR|locus:2128469 DIR6 "dirigent protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 105/165 (63%), Positives = 130/165 (78%)

Query:     6 SQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVF 65
             S +V + RK    +KP K F  Y+HD +L D D+VAN+TSA + S   LGN++FG  V+F
Sbjct:    24 SDTVLSFRKTIDQKKPCKHFSFYFHD-ILYDGDNVANATSAAIVSPPGLGNFKFGKFVIF 82

Query:    66 NDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEK 125
             + P+T D+++ S   A AQGFYFY+MK D+++WF+YTLVFNS+E+KGTLNIMGADLM E 
Sbjct:    83 DGPITMDKNYLSKPVARAQGFYFYDMKMDFNSWFSYTLVFNSTEHKGTLNIMGADLMMEP 142

Query:   126 TRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
             TRDLSVVGGTGDFFMARGIATF TD  +G KYFR+KMDIKLYECY
Sbjct:   143 TRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY 187

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0042349 "guiding stereospecific synthesis activity" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:1901599 "(-)-pinoresinol biosynthetic process" evidence=IDA

TAIR|locus:2136128 AT4G11190 "AT4G11190" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 88/170 (51%), Positives = 118/170 (69%)

Query:     1 MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
             +L+ +S +V + R+     KP K+FV Y H N+  D D+  N+TSA + +   LG++ FG
Sbjct:    15 VLLYQSTTVLSFRQPFNLAKPCKRFVFYLH-NVAYDGDNTDNATSAAIVNPLGLGDFSFG 73

Query:    61 MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGAD 120
               V+ ++PVT DQ+  S + A  QGF+FY+ K  Y  W ++++VFNS+++KG LNIMG +
Sbjct:    74 KFVIMDNPVTMDQNMLSEQVARVQGFFFYHGKTKYDTWLSWSVVFNSTQHKGALNIMGEN 133

Query:   121 LMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
                E TRDL VVGGTGDF M RGIATF TD VEG KYFR+KMDIKLYECY
Sbjct:   134 AFMEPTRDLPVVGGTGDFVMTRGIATFMTDLVEGSKYFRVKMDIKLYECY 183

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2136143 AT4G11210 "AT4G11210" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 87/170 (51%), Positives = 119/170 (70%)

Query:     1 MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
             +L+ +S +VS+ +K     KP K+FVL+ HD +  D D+ AN+TSA + +   LG++ FG
Sbjct:    15 VLLCQSYTVSSFQKSLDLAKPCKRFVLHLHD-IAYDGDNAANATSAAIVNPLGLGDFSFG 73

Query:    61 MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGAD 120
               V+ +DPVT DQ++ S   A  QGF+ Y+ K  Y AW A+T+VFNS+++KG   IMG +
Sbjct:    74 KFVIMDDPVTMDQNYLSKPVARVQGFFCYHGKATYDAWIAWTVVFNSTQHKGAFTIMGEN 133

Query:   121 LMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
                E TRDL +VGGTGDF M RGIAT TTD ++G KYFR+K+DIKLYECY
Sbjct:   134 PFMEPTRDLPIVGGTGDFIMTRGIATLTTDHIDGSKYFRVKLDIKLYECY 183

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

TAIR|locus:2136118 DP1 "AT4G11180" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 89/171 (52%), Positives = 120/171 (70%)

Query:     1 MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
             +L+ +S +VS   K    +KP K FVLY H N+  D D+ AN+T+A +     LG++ FG
Sbjct:    16 VLLLQSSTVSYVPKSFDLKKPCKHFVLYLH-NIAYDGDNAANATAATIVKPLGLGDHSFG 74

Query:    61 MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGAD 120
              +++ N+PVT DQ++ S   A AQGFYFYNMK +Y+AW A+TLVFNS+++KGT  IM A+
Sbjct:    75 ELIIINNPVTLDQNYLSKPVARAQGFYFYNMKTNYNAWVAWTLVFNSTKHKGTFTIMDAN 134

Query:   121 LMP-EKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
                 +  RDLS+VGGTGDF M RGIATF T   +G KYF ++M+IKLYECY
Sbjct:   135 PFGLQPARDLSIVGGTGDFLMTRGIATFKTKLTQGSKYFCVEMNIKLYECY 185

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS;IMP

TAIR|locus:2162361 AT5G42500 "AT5G42500" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 48/156 (30%), Positives = 77/156 (49%)

Query:     3 VSESQSVSATRKISKYQKPRK--QFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
             V+ES++ S T+    Y KP K      Y+HD +  D         A+ T+ +   N  FG
Sbjct:    22 VTESEAYSTTKPCQGY-KPDKFTHLHFYFHDVISGDKPTAVKVAEARRTNSS---NVNFG 77

Query:    61 MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKG-TLNIMGA 119
             ++++ +DP+T+     S E   AQG Y      + S    + L F + E+ G T+ + G 
Sbjct:    78 VIMIADDPLTEGPDPSSKEVGRAQGMYALTAMKNISFTMVFNLAFTAGEFNGSTVAMYGR 137

Query:   120 DLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGI 155
             + +  K R++ ++GGTG F  ARG A   T  V G+
Sbjct:   138 NEIFSKVREMPIIGGTGAFRFARGYAQAKTYKVVGL 173

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2162366 AT5G42510 "AT5G42510" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 49/153 (32%), Positives = 74/153 (48%)

Query:     8 SVSATRKISKYQ--KPRK--QFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVV 63
             SV+A    + YQ  KP K      Y+HD +  D         A+ T  T L N +FG+++
Sbjct:    21 SVTAYSTTTPYQGYKPEKFTHLHFYFHDVISGDKPTAVKVAEARPT--TTL-NVKFGVIM 77

Query:    64 VFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKG-TLNIMGADLM 122
             + +DP+T+     S E   AQG Y      D      +  VF + E+ G T+ + G + +
Sbjct:    78 IADDPLTEGPDPSSKEVGRAQGMYASTAMKDIVFTMVFNYVFTAGEFNGSTIAVYGRNDI 137

Query:   123 PEKTRDLSVVGGTGDFFMARGIATFTTDAVEGI 155
               K R+L ++GGTG F  ARG A   T  + G+
Sbjct:   138 FSKVRELPIIGGTGAFRFARGYALPKTYKIVGL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2009769 AT1G65870 "AT1G65870" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 47/152 (30%), Positives = 71/152 (46%)

Query:     3 VSESQSVSATRKISKY--QKPRKQFVL--YYHDNLLLDPDDVANSTSAKVTSGTKLGNYE 58
             ++ES+S S T K + Y   KP K   L  Y+HD +  D        +   T+ +  G   
Sbjct:    22 ITESKSFSTTVK-APYPGHKPDKLTHLHFYFHDIVSGDKPTSVQVANGPTTNSSATG--- 77

Query:    59 FGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYK-GTLNIM 117
             FG+V V +D +T      S E   AQG Y    +N      A+ LVF   ++   T+ + 
Sbjct:    78 FGLVAVVDDKLTVGPEITSEEVGRAQGMYASADQNKLGLLMAFNLVFTKGKFSDSTVAMY 137

Query:   118 GADLMPEKTRDLSVVGGTGDFFMARGIATFTT 149
             G + +  K R++ ++GGTG F   RG A   T
Sbjct:   138 GRNPVLSKVREMPIIGGTGAFRFGRGYALAKT 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2017689 AT1G22900 "AT1G22900" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 48/156 (30%), Positives = 69/156 (44%)

Query:     3 VSESQSVSATRKISKYQKPRKQFVL--YYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFG 60
             V++S+  S T       KP K   L  Y+HD  ++  D       A+   GT      FG
Sbjct:    30 VTQSKPYSKTTPFQG-NKPDKLTHLHFYFHD--IISGDKPTTIRVAEAP-GTNSSATVFG 85

Query:    61 MVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKG-TLNIMGA 119
              V++ + PVT+     S E   AQG Y       +     +  VF   E+ G T  + G 
Sbjct:    86 AVLIVDAPVTEGPELSSKEVGRAQGLYASTDMKTFGFTMVFNFVFTEGEFNGSTAALYGR 145

Query:   120 DLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGI 155
             + +  + R+L ++GGTGDF  ARG A   T  V  I
Sbjct:   146 NPILLEERELPIIGGTGDFRFARGYALPKTYKVVNI 181

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2047002 AT2G21100 "AT2G21100" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 40/126 (31%), Positives = 59/126 (46%)

Query:    28 YYHDNLLLDPDDVANSTSAKVTSGTKLGNYE--FGMVVVFNDPVTKDQSFQSPEAATAQG 85
             Y+HD L        N T+ KV  GT        FG V + +D +T+    +S     AQG
Sbjct:    48 YFHDTL-----SGKNPTAVKVAQGTDTEKSPTLFGAVFMVDDALTETADPKSKLVGRAQG 102

Query:    86 FYFYNMKNDYSAWFAYTLVFNSSEYK-GTLNIMGADLMPEKTRDLSVVGGTGDFFMARGI 144
              Y  + K +     A +  F    YK  T++++G +      R++ +VGGTG F MARG 
Sbjct:   103 LYGSSCKEEVGLIMAMSFCFEDGPYKDSTISMIGKNSAMNPIREMPIVGGTGMFRMARGY 162

Query:   145 ATFTTD 150
             A   T+
Sbjct:   163 AIARTN 168

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam03018	144	pfam03018, Dirigent, Dirigent-like protein	9e-53

>gnl|CDD|217321 pfam03018, Dirigent, Dirigent-like protein

 Score =  164 bits (417), Expect = 9e-53
 Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 21  PRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEA 80
                  Y HD +        N+T+ +V S     +  FG VVV +DP+T+     S   
Sbjct: 1   KLTHLHFYMHDIVTG-----PNATAVQVASPPGTNSSGFGTVVVIDDPLTEGPDLNSKLV 55

Query: 81  ATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKG-TLNIMGADLMPEKTRDLSVVGGTGDFF 139
             AQGFY Y  ++  S   A+T VF S EY G TL +MG + + E+ R+LSVVGGTG F 
Sbjct: 56  GRAQGFYVYASQDGLSLLMAFTFVFTSGEYNGSTLAVMGRNPVFEEVRELSVVGGTGKFR 115

Query: 140 MARGIATFTT--DAVEGIKYFRLKMDIKL 166
           MARG A   T      G     L + +K 
Sbjct: 116 MARGYALARTYFSLTSGDAIVELNVYVKH 144

This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF03018	144	Dirigent: Dirigent-like protein; InterPro: IPR0042	100.0
PF06351	176	Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR	98.12
PLN02343	229	allene oxide cyclase	97.69
PF11528	134	DUF3224: Protein of unknown function (DUF3224); In	87.64

>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants

Probab=100.00  E-value=1.8e-49  Score=310.20  Aligned_cols=139  Identities=37%  Similarity=0.600  Sum_probs=126.4

Q ss_pred             CeeeEEEEeeeeeecCCCCCCCcceEEeeeCCCCCCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEE
Q 038058           21 PRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFA  100 (170)
Q Consensus        21 k~~~l~fY~Hd~~~~~g~~~~n~t~v~v~~p~~~~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~  100 (170)
                      |++||+||||| +.    ++||+|++.|+.|+.+...+||+++|+||||||||+++||+||||||+|+.+++++.+++++
T Consensus         1 ~~t~l~fY~H~-~~----~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~   75 (144)
T PF03018_consen    1 KETHLHFYMHD-IV----SGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMS   75 (144)
T ss_pred             CceEEEEEeee-cC----CCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEE
Confidence            68999999999 67    45899999999887655559999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcCC-eEEEEeccCCCCCceeeEEEeccccccCceeEEEEEEe-eec-CcEEEEEEEEE
Q 038058          101 YTLVFNSSEYKG-TLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTD-AVE-GIKYFRLKMDI  164 (170)
Q Consensus       101 ~~~vF~~g~~~G-tL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~-~~~-g~~~~~l~i~v  164 (170)
                      ++++|++++||| ||+++|+++..+++||||||||||+||||||||+++++ ... ++.++||+|++
T Consensus        76 ~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~~v~e~~v~~  142 (144)
T PF03018_consen   76 FTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGNAVLELNVHL  142 (144)
T ss_pred             EEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCCEEEEEEEEE
Confidence            999999999999 99999999988999999999999999999999999999 444 46666666554

>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5

Probab=98.12  E-value=0.00018  Score=57.45  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=75.2

Q ss_pred             CCCCeeeEEEEeeeeeecCCCCCCCcce-EEeeeCCCCCCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecC----
Q 038058           18 YQKPRKQFVLYYHDNLLLDPDDVANSTS-AKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMK----   92 (170)
Q Consensus        18 ~~~k~~~l~fY~Hd~~~~~g~~~~n~t~-v~v~~p~~~~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~----   92 (170)
                      .+.|+..|+.|=-. ...     +++.+ ++...-   +....|+.+-|.|+|.+|..  -+-+|--+|+-+.-..    
T Consensus         3 ~p~kvqel~vyeiN-Erd-----R~SPa~L~ls~k---~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k   71 (176)
T PF06351_consen    3 RPTKVQELSVYEIN-ERD-----RGSPAYLRLSQK---SVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEK   71 (176)
T ss_dssp             -----EEEEEEEE---S------S--S--B--SSS---SSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCC
T ss_pred             CccceEEEEEEEEc-ccc-----cCCCcEEEcccc---cchhcccccccccccccchh--hhhhcccceEEEEEEecccc
Confidence            45677788888443 231     22222 222221   33568999999999999987  5889999999766432    


Q ss_pred             CCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEEeccccccCceeEEEEEEeeec
Q 038058           93 NDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVE  153 (170)
Q Consensus        93 ~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~~~~  153 (170)
                      .+...=-.+++-|.+   -|.|+++|..... ++.-++|.||||-|+.|+|-++++.+.+.
T Consensus        72 ~GdryEaiySfyfGd---yGhISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivfP  128 (176)
T PF06351_consen   72 KGDRYEAIYSFYFGD---YGHISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVFP  128 (176)
T ss_dssp             TEEEEEEEEEEE-GG---GEEEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEETT
T ss_pred             CCceEEEEEEEEecc---cceEEEecccccc-cceeEEEeccCceeecceEEEEEEEeecc
Confidence            232333456677754   5799999997654 56789999999999999999999987655

3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.

>PLN02343 allene oxide cyclase

Probab=97.69  E-value=0.0021  Score=53.31  Aligned_cols=91  Identities=18%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             CCcccEEEEeeceecCCCCCCccceeeEEEEEEecC----CCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058           57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMK----NDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV  132 (170)
Q Consensus        57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~----~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV  132 (170)
                      ...|+.+-|.|.|.+|.-  -|-+|--.|+-+.-..    .+..+=-.+++-|.|   -|.|+|+|..... ++.-++|.
T Consensus        85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD---yGHisvqGpylty-eDt~LaiT  158 (229)
T PLN02343         85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD---YGHISVQGPYLTY-EDTYLAIT  158 (229)
T ss_pred             ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC---cceeEEecccccc-ccceEEee
Confidence            568999999999999865  4789999998665533    233344567788864   5799999997654 45689999


Q ss_pred             eccccccCceeEEEEEEeeec
Q 038058          133 GGTGDFFMARGIATFTTDAVE  153 (170)
Q Consensus       133 GGTG~Fr~ArG~a~~~t~~~~  153 (170)
                      ||+|-|+.|+|-++++.+.+.
T Consensus       159 GGsGiFega~GqvkL~qivfP  179 (229)
T PLN02343        159 GGSGIFEGAYGQVKLHQIVFP  179 (229)
T ss_pred             cCcceeecceeEEEEeeeeee
Confidence            999999999999999876544

>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function

Probab=87.64  E-value=8.3  Score=29.90  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=46.3

Q ss_pred             CccceeeEEEEEEecCC-CceeEEEEEEEE-ecCCcCCe--EEEEeccCCCCCceeeEEE--eccccccCceeEEEEEEe
Q 038058           77 SPEAATAQGFYFYNMKN-DYSAWFAYTLVF-NSSEYKGT--LNIMGADLMPEKTRDLSVV--GGTGDFFMARGIATFTTD  150 (170)
Q Consensus        77 Sk~VGRaQG~~~~~~~~-~~~~~~~~~~vF-~~g~~~Gt--L~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArG~a~~~t~  150 (170)
                      -.+.|++++-|+.+-.. +.+.+..+..+= +-+..+||  |+-.|.........+|-||  -|||++...+|-..++..
T Consensus        40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~  119 (134)
T PF11528_consen   40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID  119 (134)
T ss_dssp             TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred             eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence            34778888888877543 444454443221 11245564  5555554433345689999  999999999999998876


Q ss_pred             e
Q 038058          151 A  151 (170)
Q Consensus       151 ~  151 (170)
                      .
T Consensus       120 ~  120 (134)
T PF11528_consen  120 E  120 (134)
T ss_dssp             T
T ss_pred             C
Confidence            5

; PDB: 2OOJ_B 2Q03_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	98.79
4h6b_A	195	Allene oxide cyclase; B-barrel, oxylipins, fatty a	98.64

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A

Probab=98.79  E-value=1.8e-07  Score=74.35  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             CCcccEEEEeeceecCCCCCCccceeeEEEEEEec----CCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058           57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNM----KNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV  132 (170)
Q Consensus        57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV  132 (170)
                      ...|..+.|+++|.+|..  -+.||.-+|+-+...    +.+..+--.+++.|.+   .|.|+++|..... ++..+||+
T Consensus        43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~GhISvQGpy~t~-~Dt~LAIT  116 (188)
T 2brj_A           43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTY-EDSFLAIT  116 (188)
T ss_dssp             SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETT-BCEEEEEE
T ss_pred             cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---CceEEEecccccc-ccceeeEe
Confidence            457999999999997765  489999999977775    2233444566777754   4699999996332 46789999


Q ss_pred             eccccccCceeEEEEEEeeecCc
Q 038058          133 GGTGDFFMARGIATFTTDAVEGI  155 (170)
Q Consensus       133 GGTG~Fr~ArG~a~~~t~~~~g~  155 (170)
                      ||||.|+.|+|.+++++..+...
T Consensus       117 GGTGif~gA~G~Vkl~~i~~P~k  139 (188)
T 2brj_A          117 GGAGIFEGAYGQVKLQQLVYPTK  139 (188)
T ss_dssp             EEEETTTTCEEEEEEEEEETTTE
T ss_pred             cCcceEcceEEEEEEEeeccCce
Confidence            99999999999999999877643

>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*

Probab=98.64  E-value=1.4e-06  Score=69.48  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=71.8

Q ss_pred             CCcccEEEEeeceecCCCCCCccceeeEEEEEEec----CCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058           57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNM----KNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV  132 (170)
Q Consensus        57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV  132 (170)
                      ...|+.+.|+++|.+|..  -+-||...|+-+...    +.+...--.+++.|.+   -|+|+++|..-. -+..-+||+
T Consensus        51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t-~eDs~lAIT  124 (195)
T 4h6b_A           51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYIT-YEDSYLAIT  124 (195)
T ss_dssp             CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEET-TBCEEEEEE
T ss_pred             cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceec-cCceeEEEe
Confidence            468999999999999987  578999999976663    2222333455666754   589999999743 345679999


Q ss_pred             eccccccCceeEEEEEEeeecC
Q 038058          133 GGTGDFFMARGIATFTTDAVEG  154 (170)
Q Consensus       133 GGTG~Fr~ArG~a~~~t~~~~g  154 (170)
                      ||||.|+.|+|-+++..+.+.-
T Consensus       125 GGTGiF~Ga~GqVkl~qiv~pf  146 (195)
T 4h6b_A          125 GGSGIFAGCYGQAKLHQIIFPF  146 (195)
T ss_dssp             EESGGGTTCEEEEEEEEEETTT
T ss_pred             cCcceEcccEEEEEEeEeeeee
Confidence            9999999999999999876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2brja1	174	Allene oxide cyclase, AOC {Thale cress (Arabidopsi	97.82
d2ooja1	133	Hypothetical protein SO1590 {Shewanella oneidensis	92.28
d2q03a1	133	Uncharacterized protein Sden_2034 {Shewanella deni	85.26

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

Probab=97.82  E-value=0.00013  Score=55.15  Aligned_cols=93  Identities=19%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CCCcccEEEEeeceecCCCCCCccceeeEEEEEEecCC----CceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEE
Q 038058           56 NYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKN----DYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSV  131 (170)
Q Consensus        56 ~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~----~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aV  131 (170)
                      ....|..+-|-|.|..|..  -|-+|--.|+-+.-...    +..+--.+++-|.|   -|.|++||.....+ +.-++|
T Consensus        28 ~n~lGDlVpFsNkly~g~l--~kRlGitaG~C~liq~~pek~gdryEa~ySfyfGD---yGhISvqGpyltye-Dtylai  101 (174)
T d2brja1          28 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTYE-DSFLAI  101 (174)
T ss_dssp             SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETTB-CEEEEE
T ss_pred             cccccccccccchhcccch--hhhccceeeEEEEEEecCCcCcceeEEEEEEEecC---cccEEEeccccccc-cceeee
Confidence            4568999999999997765  47899999987665432    22233466777764   47999999986543 568999


Q ss_pred             EeccccccCceeEEEEEEeeecC
Q 038058          132 VGGTGDFFMARGIATFTTDAVEG  154 (170)
Q Consensus       132 VGGTG~Fr~ArG~a~~~t~~~~g  154 (170)
                      +||||-|+.|+|-++++.+.+.-
T Consensus       102 TGGsGiFeGa~GqVkL~qivfPf  124 (174)
T d2brja1         102 TGGAGIFEGAYGQVKLQQLVYPT  124 (174)
T ss_dssp             EEEEETTTTCEEEEEEEEEETTT
T ss_pred             ecccceeecceeEEEEeeeeeee
Confidence            99999999999999999876553

>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: AOC barrel-like
superfamily: SO1590-like
family: SO1590-like
domain: Hypothetical protein SO1590
species: Shewanella oneidensis [TaxId: 70863]

Probab=92.28  E-value=1.3  Score=31.59  Aligned_cols=85  Identities=18%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             CCccceeeEEEEEEec--CCCceeEEEEEEEEe--cCCcCC--eEEEEeccCCCCCceeeEEE--eccccccCceeEEEE
Q 038058           76 QSPEAATAQGFYFYNM--KNDYSAWFAYTLVFN--SSEYKG--TLNIMGADLMPEKTRDLSVV--GGTGDFFMARGIATF  147 (170)
Q Consensus        76 ~Sk~VGRaQG~~~~~~--~~~~~~~~~~~~vF~--~g~~~G--tL~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArG~a~~  147 (170)
                      +-.+-|+.++.++.+-  .++...++.+. .|+  -+..+|  +|+-.|..........|-||  -|||++...+|...+
T Consensus        38 ~Gdl~G~s~~e~l~~y~~~~g~A~yvg~E-~f~G~l~Gr~Gtfvlqh~G~~~~g~~~~~~~IVpgSgTGeL~Gl~G~~~i  116 (133)
T d2ooja1          38 YGELEARSQGEMLSAMTAVKGSAGYVAIE-QVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI  116 (133)
T ss_dssp             CSSEEEEEEEEEEEEECSSTTCEEEEEEE-EEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred             eeeeeeEEEEEEEEEecCCCCceEEEEEE-EEEEEECCceEEEEEEEeeEEcCCccceEEEEEcCCCCccccccEEEEEE
Confidence            3457899999999885  23445555543 222  234556  45555665555566789999  999999999999998


Q ss_pred             EEeeecCcEEEEEEEE
Q 038058          148 TTDAVEGIKYFRLKMD  163 (170)
Q Consensus       148 ~t~~~~g~~~~~l~i~  163 (170)
                      +.  .+|...+++..+
T Consensus       117 ~~--e~G~h~y~~dye  130 (133)
T d2ooja1         117 SI--ENGQHFYEFSFC  130 (133)
T ss_dssp             EE--ETTEEEEEEEEE
T ss_pred             EE--eCCeEEEEEEEe
Confidence            53  367565565554

>d2q03a1 b.159.2.1 (A:5-137) Uncharacterized protein Sden_2034 {Shewanella denitrificans [TaxId: 192073]}

class: All beta proteins
fold: AOC barrel-like
superfamily: SO1590-like
family: SO1590-like
domain: Uncharacterized protein Sden 2034
species: Shewanella denitrificans [TaxId: 192073]

Probab=85.26  E-value=2.7  Score=29.81  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             CccceeeEEEEEEecCCCc-eeEEEEEEEEe--cCCcCC--eEEEEeccCCCCCceeeEEEe--ccccccCceeEEEEEE
Q 038058           77 SPEAATAQGFYFYNMKNDY-SAWFAYTLVFN--SSEYKG--TLNIMGADLMPEKTRDLSVVG--GTGDFFMARGIATFTT  149 (170)
Q Consensus        77 Sk~VGRaQG~~~~~~~~~~-~~~~~~~~vF~--~g~~~G--tL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArG~a~~~t  149 (170)
                      -.+.|++++.|+.+-+..- +.++.+. .|+  -+..+|  .|+-.|.........+|-||=  |||++...+|...+..
T Consensus        40 Gdl~G~s~~~~l~~y~~~g~A~yvg~E-~f~G~l~Gr~Gsfvlqh~G~~~~g~~~~~~~IVpgSgTGeL~Gl~Gsg~~~~  118 (133)
T d2q03a1          40 GVLQGHSEIRYLMSYQDNANATFVGFE-HFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS  118 (133)
T ss_dssp             SSEEEEEEEEEEEEEEETTEEEEEEEE-EEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred             eeEEEEEEEEEEEEEcCCCcEEEEEEE-EEEEEECCceEEEEEEEEeEEcCCceeEEEEEEcCCCCccccCcEEEEEEEE
Confidence            4578999998888855433 3344332 222  234556  455556655545567899995  9999999999988754


Q ss_pred             eeecCcEEEEEE
Q 038058          150 DAVEGIKYFRLK  161 (170)
Q Consensus       150 ~~~~g~~~~~l~  161 (170)
                      . .+|...+++.
T Consensus       119 ~-e~G~~~Y~~~  129 (133)
T d2q03a1         119 T-ENGQANYQIT  129 (133)
T ss_dssp             C-STTEEEEEEE
T ss_pred             c-CCCeeEEEEE
Confidence            3 3554434443