Citrus Sinensis ID: 038071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MPTLATIKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEESRQSDSKRINSKEIRSCPLQIWCC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEHHccccccccccEEEccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEHcccccccccccccccccccccccccHccccccccccccHHHccccccccEEEEEcccccccccccccccccHHccccccEEEEc
Coil and Loop (DISEMBL)
mptlatikeeeeeeegvvddelvsggslpkpmeglnevgsppfLRKIYEMVEDletnpavswissateesrqsdskrinskeirscplqiwcc
Flexible Loop (DISEMBL)
mptlatikeeeeeeegvvddelvsggslpkpmeglnevgspPFLRKIYEMVEDLETNpavswissateesrqsdskrinskeirscplqiwcc
Low Complexity Region (SEG)
MPTLATIKeeeeeeeGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEESRQSDSKRINSKEIRSCPLQIWCC
Disordered region (IsUnstruct)
******************************************FLRKIYEMVEDLETN*AVSW***********************CPLQIWC*
Disordered Region (DISOPRED)
****ATI*******************************GSPPFLRKIYEMVEDLETNPAV***********************RSCPLQIWCC
Disordered Region (DISEMBL)
********************ELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWI***************NSKEIRSCPLQIWCC
Disordered Region (DISPRO)
***************************L*KP*EGLNEVGSPPFLRKIYEMVEDLETNPAVSWIS****************KEIRSCPLQIWCC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPTLATIKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEESRQSDSKRINSKEIRSCPLQIWCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
O80982	345	Heat stress transcription	yes	no	0.365	0.098	0.705	7e-08
Q338B0	358	Heat stress transcription	yes	no	0.580	0.150	0.517	2e-07
Q6VBB2	372	Heat stress transcription	no	no	0.709	0.177	0.461	3e-07
Q9LUH8	406	Heat stress transcription	no	no	0.419	0.096	0.589	4e-07
P41152	351	Heat shock factor protein	N/A	no	0.344	0.091	0.656	2e-06
Q84MN7	376	Heat stress transcription	no	no	0.376	0.093	0.6	6e-06
Q8H7Y6	359	Heat stress transcription	no	no	0.397	0.103	0.567	7e-06
Q6F388	357	Heat stress transcription	no	no	0.494	0.128	0.520	1e-05
Q657C0	402	Heat stress transcription	no	no	0.365	0.084	0.588	6e-05
Q9M1V5	282	Heat stress transcription	no	no	0.365	0.120	0.617	0.0001

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 29 PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          P+PMEGLNE G PPFL K YEMVED  T+  VSW
Sbjct: 31 PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSW 64

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).
Arabidopsis thaliana (taxid: 3702)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 7  IKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          +KEE  E +     E   GG+ P+PMEGL+EVG PPFL K Y++VED  T+  VSW
Sbjct: 9  VKEEMLESQQQQRQE--DGGAAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSW 62

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 12/78 (15%)

Query: 2  PTLATIKEEEEEEEGVVDDELVSG---------GSLPKPMEGLNEVGSPPFLRKIYEMVE 52
          P L  +KEEE   +G    E+V+G         G  P+PMEGL++ G PPFL K Y+MV+
Sbjct: 4  PMLNAVKEEESHGDGG-GLEVVAGEDGAAAVAAGVAPRPMEGLHDAGPPPFLTKTYDMVD 62

Query: 53 DLETNPAVSWISSATEES 70
          D  T+ AVSW  SAT  S
Sbjct: 63 DAGTDAAVSW--SATSNS 78

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 27 SLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISS 65
          S P+P+EGL+E G PPFL K Y++VED  TN  VSW  S
Sbjct: 46 SYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKS 84

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 31 PMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          PMEGL++VG PPFL K YEMVED  T+  +SW
Sbjct: 20 PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISW 51

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q84MN7|HFA2A_ORYSJ Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 26/35 (74%)

Query: 28 LPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          LP+PMEGL E G PPFL K YE+V+D  T+  +SW
Sbjct: 39 LPRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISW 73

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 27/37 (72%)

Query: 26 GSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          G  P+PMEGL+EVG PPFL K +++V D  T+  VSW
Sbjct: 21 GEAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSW 57

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 23 VSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEES 70
          V+ G  P+PM+GL + G PPFL K Y+MV+D  T+  VSW  SAT  S
Sbjct: 19 VANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSW--SATNNS 64

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q657C0|HFA6B_ORYSJ Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 29  PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
           P+PMEGL E G  PF+ K YEMV D  T+  VSW
Sbjct: 80  PRPMEGLGEAGPAPFVAKTYEMVADAATDAVVSW 113

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M1V5|HFA7B_ARATH Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 29 PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          P PMEGL E G  PFL K +EMV D  TN  VSW
Sbjct: 15 PVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSW 48

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
356545733	408	PREDICTED: heat stress transcription fac	0.483	0.110	0.666	5e-10
356537158	649	PREDICTED: uncharacterized protein LOC10	0.602	0.086	0.515	3e-08
356561927	404	PREDICTED: heat stress transcription fac	0.365	0.084	0.764	6e-08
414871360	110	TPA: hypothetical protein ZEAMMB73_64816	0.623	0.527	0.482	2e-07
242039641	362	hypothetical protein SORBIDRAFT_01g02149	0.602	0.154	0.5	3e-07
388252715	408	HSFA9 [Coffea arabica]	0.559	0.127	0.490	4e-07
449446823	382	PREDICTED: heat shock factor protein HSF	0.354	0.086	0.757	4e-07
226501926	357	heat shock factor protein HSF30 [Zea may	0.602	0.156	0.5	4e-07
414871357	357	TPA: heat shock factor protein HSF30 iso	0.602	0.156	0.5	5e-07
297738649	663	unnamed protein product [Vitis vinifera]	0.526	0.073	0.530	2e-06

>gi|356545733|ref|XP_003541290.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 18 VDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          +DD  V+G S PKPMEGL+EVG PPFL+K +EMVED  T+P VSW
Sbjct: 50 IDDGAVNGSSSPKPMEGLHEVGPPPFLKKTFEMVEDPHTDPIVSW 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537158|ref|XP_003537097.1| PREDICTED: uncharacterized protein LOC100809819 [Glycine max]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 10/66 (15%)

Query: 1   MPTLATIKEEEEEEEGVVDDELV----SGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLET 56
           M T+A   +EE      +DD++V    S  + PKPMEGL++VG PPFL+K +EMVED  T
Sbjct: 42  MRTMAHAVKEE------MDDDIVNWSLSSLTSPKPMEGLHKVGPPPFLKKTFEMVEDPHT 95

Query: 57  NPAVSW 62
           NP VSW
Sbjct: 96  NPIVSW 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561927|ref|XP_003549228.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query: 29 PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          PKPMEGL+EVG PPFL+K +EMVED  TNP VSW
Sbjct: 60 PKPMEGLHEVGPPPFLKKTFEMVEDPHTNPIVSW 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414871360|tpg|DAA49917.1| TPA: hypothetical protein ZEAMMB73_648169 [Zea mays]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 5  ATIKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
            IKEE  E++    D +  GG  P+PMEGL+EVG PPFL K +++VED  T+  +SW
Sbjct: 8  GIIKEELLEQQPPTQDGVGGGGDAPRPMEGLHEVGPPPFLTKTFDLVEDPATDAVLSW 65

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039641|ref|XP_002467215.1| hypothetical protein SORBIDRAFT_01g021490 [Sorghum bicolor] gi|241921069|gb|EER94213.1| hypothetical protein SORBIDRAFT_01g021490 [Sorghum bicolor]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 7  IKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          +KEE  E++  + D +  GG  P+PMEGL+EVG PPFL K +++VED  T+  VSW
Sbjct: 10 VKEELLEQQQPLQDGVGDGGGAPRPMEGLHEVGPPPFLTKTFDLVEDPATDAVVSW 65

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388252715|gb|AFK24440.1| HSFA9 [Coffea arabica]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 16 GVVDDELVSGG---SLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSAT 67
          G V      GG    +PKP++GL+EVG PPFL+K +EMV+D ET+  +SW S+ T
Sbjct: 45 GNVSSNFSGGGEFSDVPKPLQGLHEVGPPPFLKKTFEMVDDPETDSTISWSSTNT 99

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446823|ref|XP_004141170.1| PREDICTED: heat shock factor protein HSF30-like [Cucumis sativus] gi|449488169|ref|XP_004157958.1| PREDICTED: heat shock factor protein HSF30-like [Cucumis sativus]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 30 KPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          KPMEGL++VG PPFL+K YEMVED ET+P VSW
Sbjct: 48 KPMEGLHDVGPPPFLKKTYEMVEDPETDPVVSW 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501926|ref|NP_001147128.1| heat shock factor protein HSF30 [Zea mays] gi|195607494|gb|ACG25577.1| heat shock factor protein HSF30 [Zea mays]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 7  IKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          IKEE  E++    D +  GG  P+PMEGL+EVG PPFL K +++VED  T+  +SW
Sbjct: 10 IKEELLEQQPPTQDGVGGGGDAPRPMEGLHEVGPPPFLTKTFDLVEDPATDAVLSW 65

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414871357|tpg|DAA49914.1| TPA: heat shock factor protein HSF30 isoform 1 [Zea mays] gi|414871358|tpg|DAA49915.1| TPA: heat shock factor protein HSF30 isoform 2 [Zea mays] gi|414871359|tpg|DAA49916.1| TPA: heat shock factor protein HSF30 isoform 3 [Zea mays]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 7  IKEEEEEEEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
          IKEE  E++    D +  GG  P+PMEGL+EVG PPFL K +++VED  T+  +SW
Sbjct: 10 IKEELLEQQPPTQDGVGGGGDAPRPMEGLHEVGPPPFLTKTFDLVEDPATDAVLSW 65

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738649|emb|CBI27894.3| unnamed protein product [Vitis vinifera]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 14  EEGVVDDELVSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
           E G     L +   + KPMEGL+E G PPFL+K +EMVED ET+  VSW
Sbjct: 388 ESGWCCSSLAAAAEVAKPMEGLHEAGPPPFLKKTFEMVEDPETDSVVSW 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.430	0.115	0.65	1.1e-08
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.419	0.096	0.589	3e-07
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.419	0.143	0.538	7.7e-06
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.365	0.120	0.617	1.8e-05
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.387	0.127	0.527	0.00037

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/40 (65%), Positives = 28/40 (70%)

Query:    23 VSGGSLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
             V   S P+PMEGLNE G PPFL K YEMVED  T+  VSW
Sbjct:    25 VGSSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSW 64

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query:    27 SLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISS 65
             S P+P+EGL+E G PPFL K Y++VED  TN  VSW  S
Sbjct:    46 SYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKS 84

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query:    29 PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSWISSAT 67
             P+PMEGL+E   PPFL K +EMV+D  T+  VSW    T
Sbjct:    16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGT 54

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query:    29 PKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
             P PMEGL E G  PFL K +EMV D  TN  VSW
Sbjct:    15 PVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSW 48

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query:    27 SLPKPMEGLNEVGSPPFLRKIYEMVEDLETNPAVSW 62
             +LP P+EGL E     FL K Y +VED  TN  VSW
Sbjct:     4 NLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSW 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        86   0.00091  102 3  11 23  0.38    30
                                                     29  0.47    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.51u 0.15s 10.66t   Elapsed:  00:00:01
  Total cpu time:  10.51u 0.15s 10.66t   Elapsed:  00:00:01
  Start:  Fri May 10 13:25:01 2013   End:  Fri May 10 13:25:02 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
smart00415	105	smart00415, HSF, heat shock factor	1e-05
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	7e-05

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 39 GSPPFLRKIYEMVEDLETNPAVSW 62
            PPFL K+Y +VED  T+  +SW
Sbjct: 1  QPPPFLTKLYLLVEDPSTDKIISW 24

Length = 105

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score = 37.5 bits (88), Expect = 7e-05
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 42 PFLRKIYEMVEDLETNPAVSW 62
          PFL K+YE++ED   +  +SW
Sbjct: 1  PFLHKLYEILEDPSYDDIISW 21

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.89
smart00415	105	HSF heat shock factor.	99.78
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.76
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.75
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	93.95
smart00413	87	ETS erythroblast transformation specific domain. v	92.33
KOG3806	177	consensus Predicted transcription factor [Transcri	87.48

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.89  E-value=4.6e-24  Score=164.02  Aligned_cols=56  Identities=30%  Similarity=0.506  Sum_probs=53.7

Q ss_pred             CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      .+++|+||+|||+||+||++|++|+||++|+||   |+.+|++.+||+||||+||+||-
T Consensus         9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFv   67 (304)
T KOG0627|consen    9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFV   67 (304)
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCcccee
Confidence            348999999999999999999999999999999   99999999999999999999984

>smart00415 HSF heat shock factor

Probab=99.78  E-value=4.4e-20  Score=124.71  Aligned_cols=54  Identities=26%  Similarity=0.469  Sum_probs=51.7

Q ss_pred             CCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           39 GSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        39 ~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      ++|.|+.|||+||+|+..+++|+|+++|++|   |+..|.+.|||+||||+||+||.
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~   57 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFV   57 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHH
Confidence            4789999999999999999999999999999   89999999999999999999983

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.76  E-value=2e-19  Score=141.16  Aligned_cols=57  Identities=14%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             CCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           36 NEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        36 ~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      +-..++.|++|||.||+||++.++|+|+++|+||   ++++|++.|||+||||+||+||.
T Consensus         6 ~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFV   65 (282)
T COG5169           6 RWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFV   65 (282)
T ss_pred             CCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHH
Confidence            3455678999999999999999999999999999   99999999999999999999983

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.75  E-value=1e-19  Score=121.56  Aligned_cols=51  Identities=24%  Similarity=0.424  Sum_probs=46.3

Q ss_pred             hHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           42 PFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        42 ~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      .|+.|||+||+|+.++++|+|+++|++|   |+.+|++.|||+||||+||+||.
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~   54 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFV   54 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHH
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceee
Confidence            4999999999999999999999999999   89999999999999999999984

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=93.95  E-value=0.016  Score=38.49  Aligned_cols=30  Identities=17%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             hhhhhcCCCCCCceeecC-CCCCC---Cccchhh
Q 038071           47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSK   76 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk   76 (93)
                      +.++++|++..++|+|.. .+..|   |++++++
T Consensus         8 Ll~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~   41 (85)
T PF00178_consen    8 LLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR   41 (85)
T ss_dssp             HHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH
T ss_pred             HHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH
Confidence            457899999999999999 89999   8888876

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=92.33  E-value=0.085  Score=35.69  Aligned_cols=30  Identities=13%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             hhhhhcCCCCCCceeecC-CCCCC---Cccchhh
Q 038071           47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSK   76 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk   76 (93)
                      |.+++.||+..++|+|.. ++..|   |+++.|+
T Consensus         8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~   41 (87)
T smart00413        8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVAR   41 (87)
T ss_pred             HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHH
Confidence            357899999999999998 57788   7877666

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=87.48  E-value=0.35  Score=36.53  Aligned_cols=31  Identities=13%  Similarity=0.325  Sum_probs=26.1

Q ss_pred             hhhhhcCCCCCCceeecC-CCCCC---Cccchhhh
Q 038071           47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSKR   77 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk~   77 (93)
                      |-++++|.+..++|+|+. +|-.|   ||++.+|.
T Consensus        75 LleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArl  109 (177)
T KOG3806|consen   75 LLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARL  109 (177)
T ss_pred             HHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHH
Confidence            346789999999999998 68789   88888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
1hks_A	106	Heat-shock transcription factor; transcription reg	2e-07
3hts_B	102	Heat shock transcription factor; transcription reg	4e-07
2ldu_A	125	Heat shock factor protein 1; structural genomics,	1e-06

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 39 GSPPFLRKIYEMVEDLETNPAVSW 62
          G P FL K++ +V+D +TN  + W
Sbjct: 3  GVPAFLAKLWRLVDDADTNRLICW 26

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score = 43.2 bits (102), Expect = 4e-07
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 36 NEVGSPPFLRKIYEMVEDLETNPAVSW 62
            +  P F+ K++ MV D      + W
Sbjct: 8  GSMARPAFVNKLWSMVNDKSNEKFIHW 34

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 41 PPFLRKIYEMVEDLETNPAVSW 62
          P FL K++ +V D +T+  + W
Sbjct: 18 PAFLTKLWTLVSDPDTDALICW 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
1hks_A	106	Heat-shock transcription factor; transcription reg	99.9
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.87
3hts_B	102	Heat shock transcription factor; transcription reg	99.86
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	91.67
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.94
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	89.89
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	89.15
4avp_A	106	ETS translocation variant 1; transcription, transc	87.77
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	83.53
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	82.61
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	80.16
2dao_A	118	Transcription factor ETV6; ETS domain, structural	80.08

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.90  E-value=8.4e-25  Score=147.83  Aligned_cols=55  Identities=20%  Similarity=0.431  Sum_probs=53.1

Q ss_pred             CCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           38 VGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        38 ~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      +++|+|+.|||+||+||+++++|+|+++|+||   |+.+|+++|||+||||+||+||.
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFv   59 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFI   59 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHH
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHH
Confidence            67899999999999999999999999999999   99999999999999999999984

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.87  E-value=1.4e-23  Score=146.21  Aligned_cols=58  Identities=19%  Similarity=0.370  Sum_probs=54.9

Q ss_pred             cCCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           35 LNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        35 ~~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      .....+|+|+.|||+||+||.++++|+|+++|++|   |+.+|+++|||+||||+||+||.
T Consensus        12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFv   72 (125)
T 2ldu_A           12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFV   72 (125)
T ss_dssp             CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHH
Confidence            34678899999999999999999999999999999   99999999999999999999984

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.86  E-value=3.2e-23  Score=140.99  Aligned_cols=57  Identities=18%  Similarity=0.395  Sum_probs=53.1

Q ss_pred             CCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           36 NEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        36 ~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      ....+|+|+.|||+||+||.++++|+|+++|++|   ++.+|+++|||+||||+||+||.
T Consensus         8 ~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFv   67 (102)
T 3hts_B            8 GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFV   67 (102)
T ss_dssp             --CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHH
T ss_pred             CCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHH
Confidence            4567899999999999999999999999999999   89999999999999999999984

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=91.67  E-value=0.092  Score=35.19  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             ChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           41 PPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        41 p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      =.||.   ++++|++..++|+|...+..|   |+++.++
T Consensus         9 wqFL~---~LL~d~~~~~~I~W~~~~g~Fklvd~e~VAr   44 (98)
T 1fli_A            9 WQFLL---ELLSDSANASCITWEGTNGEFKMTDPDEVAR   44 (98)
T ss_dssp             HHHHH---HHHHTCSSCSSEECTTSSSSCEECCHHHHHH
T ss_pred             HHHHH---HHhcCcccCCCeEEeCCCCEEEEcCHHHHHH
Confidence            34554   567899999999999888889   8877776

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.94  E-value=0.11  Score=35.54  Aligned_cols=31  Identities=16%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      |.++++|++..++|+|...+..|   |+++.++.
T Consensus         7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArl   40 (110)
T 1awc_A            7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQK   40 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHH
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHH
Confidence            35789999999999999888788   77777663

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=89.89  E-value=0.081  Score=35.13  Aligned_cols=31  Identities=6%  Similarity=0.289  Sum_probs=25.7

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      |.++++|++..++|+|...+..|   |+++.++.
T Consensus        11 L~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArl   44 (93)
T 1bc8_C           11 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARL   44 (93)
T ss_dssp             HHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHH
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHH
Confidence            45789999999999999887788   88777663

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=89.15  E-value=0.11  Score=35.01  Aligned_cols=30  Identities=13%  Similarity=0.318  Sum_probs=24.5

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      |.++++|++..++|+|...+..|   |+++.++
T Consensus        14 Ll~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VAr   46 (102)
T 2ypr_A           14 LLELLADRANAGCIAWEGGHGEFKLTDPDEVAR   46 (102)
T ss_dssp             HHHHHTCGGGTTTCEECSSTTEEECSSHHHHHH
T ss_pred             HHHHhcCCCCCCcccccCCCceEEecChHHHHH
Confidence            34778999999999998877778   7777766

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=87.77  E-value=0.14  Score=34.56  Aligned_cols=33  Identities=9%  Similarity=0.272  Sum_probs=26.2

Q ss_pred             HHHhhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           44 LRKIYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        44 l~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      ..=|.++++|++..++|+|...+..|   ++++.++
T Consensus        15 wqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~   50 (106)
T 4avp_A           15 WQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVAR   50 (106)
T ss_dssp             HHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHH
T ss_pred             HHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHH
Confidence            33345778999999999999988778   7777766

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=83.53  E-value=0.32  Score=34.72  Aligned_cols=41  Identities=17%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      .+|......=|.++++|++..++|+|...+..|   |+++.++.
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArl   79 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR   79 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHH
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHH
Confidence            455555555566889999999999999887778   88877763

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=82.61  E-value=0.35  Score=34.89  Aligned_cols=31  Identities=6%  Similarity=0.289  Sum_probs=25.9

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      |.+++.|++..++|+|...+.-|   |+++.++.
T Consensus        12 LleLL~d~~~~~~I~Wt~~~geFklvdpe~VArL   45 (157)
T 1hbx_G           12 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARL   45 (157)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHH
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCcHHHHHH
Confidence            45789999999999999887788   88777764

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=80.16  E-value=0.42  Score=34.88  Aligned_cols=41  Identities=17%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      .+|.-....=|.++++|+...++|+|...+..|   |+++.|+.
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArl  104 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARR  104 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHH
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHH
Confidence            344444455556789999999999999887778   88777763

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.08  E-value=0.27  Score=33.94  Aligned_cols=34  Identities=9%  Similarity=0.208  Sum_probs=25.8

Q ss_pred             HHHhhhhhcCCCCCCceeecCC-CCCC---Cccchhhh
Q 038071           44 LRKIYEMVEDLETNPAVSWISS-ATEE---SRQSDSKR   77 (93)
Q Consensus        44 l~KtY~mVeDp~td~iIsWs~~-G~SF---~~~~Fsk~   77 (93)
                      ..=|.++++|++..++|+|... +.-|   |+++.++.
T Consensus        12 wqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArl   49 (118)
T 2dao_A           12 WDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARL   49 (118)
T ss_dssp             HHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHH
T ss_pred             HHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHH
Confidence            3345678899999999999974 4578   88777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	2e-06
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-06

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 40.2 bits (94), Expect = 2e-06
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 39 GSPPFLRKIYEMVEDLETNPAVSW 62
            P F+ K++ MV D      + W
Sbjct: 1  ARPAFVNKLWSMVNDKSNEKFIHW 24

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 39.5 bits (92), Expect = 4e-06
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 39 GSPPFLRKIYEMVEDLETNPAVSW 62
          G P FL K++ +V+D +TN  + W
Sbjct: 3  GVPAFLAKLWRLVDDADTNRLICW 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.83
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.82
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	92.35
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	91.01
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	88.97
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	88.22
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	86.83

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.83  E-value=3.9e-22  Score=132.73  Aligned_cols=55  Identities=20%  Similarity=0.431  Sum_probs=53.0

Q ss_pred             CCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           38 VGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        38 ~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      +++|+|+.|||+||+|+.++++|+|+++|++|   |+..|.+.|||+||||+||+||.
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~   59 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFI   59 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHH
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHH
Confidence            67899999999999999999999999999999   89999999999999999999984

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.82  E-value=5.3e-22  Score=130.81  Aligned_cols=53  Identities=19%  Similarity=0.408  Sum_probs=51.2

Q ss_pred             CChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071           40 SPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC   92 (93)
Q Consensus        40 ~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~   92 (93)
                      -|+|+.|||+||+|+..+++|+|+++|++|   |+.+|.+.|||+||||+||+||.
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~   57 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFV   57 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHH
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHH
Confidence            589999999999999999999999999999   99999999999999999999984

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.032  Score=35.83  Aligned_cols=30  Identities=13%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      |.+|+.|++..++|+|...+..|   |+++.|+
T Consensus        12 L~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~   44 (98)
T d1flia_          12 LLELLSDSANASCITWEGTNGEFKMTDPDEVAR   44 (98)
T ss_dssp             HHHHHHTCSSCSSEECTTSSSSCEECCHHHHHH
T ss_pred             HHHHhcCcccCCceEEECCCCEEEeCCHHHHHH
Confidence            34688999999999998887778   7777665

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.01  E-value=0.036  Score=36.31  Aligned_cols=30  Identities=17%  Similarity=0.419  Sum_probs=25.0

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      |.++++|++..++|+|...+..|   |+++.|+
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~   39 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQ   39 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHH
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHH
Confidence            45778999999999999888888   7777665

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.037  Score=34.79  Aligned_cols=29  Identities=14%  Similarity=0.339  Sum_probs=23.8

Q ss_pred             hhhhcCCCCCCceeecC-CCCCC---Cccchhh
Q 038071           48 YEMVEDLETNPAVSWIS-SATEE---SRQSDSK   76 (93)
Q Consensus        48 Y~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk   76 (93)
                      .++++|++..++|+|.. ++..|   |+++.|+
T Consensus         8 ~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~   40 (86)
T d1duxc_           8 LQLLREQGNGHIISWTSRDGGEFKLVDAEEVAR   40 (86)
T ss_dssp             HHHHHHCSSSSSCEEEETTTTEEECTTHHHHHH
T ss_pred             HHHhcCCCCCCceEeccCCCCEEEecCHHHHHH
Confidence            35678999999999998 57788   7777776

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.061  Score=37.00  Aligned_cols=31  Identities=6%  Similarity=0.289  Sum_probs=25.9

Q ss_pred             hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071           47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR   77 (93)
Q Consensus        47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~   77 (93)
                      |.++++|++..++|+|...+..|   ++++.++.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~l   43 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARL   43 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHH
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHH
Confidence            34678999999999999888889   88877763

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.83  E-value=0.084  Score=35.88  Aligned_cols=39  Identities=15%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             CCCChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071           38 VGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSK   76 (93)
Q Consensus        38 ~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk   76 (93)
                      ++.-....=|.+++.|++..++|+|...+..|   ++++.|+
T Consensus        37 ~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~   78 (142)
T d1gvja_          37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVAR   78 (142)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHH
T ss_pred             CCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHH
Confidence            34333333455788999999999999877778   7777765