Citrus Sinensis ID: 038160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 270 | ||||||
| 358344895 | 906 | Resistance protein RGC2, partial [Medica | 0.866 | 0.258 | 0.294 | 1e-21 | |
| 147787802 | 1517 | hypothetical protein VITISV_005047 [Viti | 0.925 | 0.164 | 0.292 | 3e-20 | |
| 357439633 | 1039 | Rpp4 candidate [Medicago truncatula] gi| | 0.918 | 0.238 | 0.261 | 3e-16 | |
| 255574526 | 1232 | Disease resistance protein RFL1, putativ | 0.859 | 0.188 | 0.305 | 9e-15 | |
| 356522570 | 2300 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.112 | 0.262 | 1e-14 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.929 | 0.330 | 0.267 | 1e-13 | |
| 357504319 | 1022 | Resistance protein RGC2 [Medicago trunca | 0.9 | 0.237 | 0.267 | 3e-13 | |
| 358344919 | 1995 | NBS/LRR resistance protein-like protein | 0.448 | 0.060 | 0.443 | 4e-13 | |
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.485 | 0.097 | 0.413 | 9e-13 | |
| 359488025 | 1781 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.149 | 0.282 | 1e-12 |
| >gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 38/272 (13%)
Query: 31 PH----FQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL--------------------- 65
PH FQ+L+ + V C L +F S+ ++ QLQ L
Sbjct: 132 PHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLVSNCGIEEIVVKEEGPDEMV 191
Query: 66 -----ELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTED---LSQNNEN 117
LT++ L L KL+ + G+H+ + +L+ + + +C ++++F + L ++++N
Sbjct: 192 KFVFPHLTSIELDNLTKLKAFFVGVHSLQCKSLKTIKLFKCPRIELFKAEPLKLQESSKN 251
Query: 118 DQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEI 177
+ I QP E+E L + +EL+L + + LK +CK+ ++ P +LE
Sbjct: 252 VEQNISTYQPLFVFEEE--LLTSVESTPQFRELELLQLHKLKYICKEGFQMDPFLHFLES 309
Query: 178 LGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAM 237
+ V SL+ L+PSS V+F + L C LI+L+T STAK+LV+L +++ C +
Sbjct: 310 IDVCQCSSLIKLVPSS-VTFSYMTYLEVTNCNGLINLITHSTAKSLVKLTTMKIEMCNWL 368
Query: 238 TEVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269
++V +D E EIVFC L+TL+L L L
Sbjct: 369 EDIVNGKED--ETNEIVFCSLQTLELISLQRL 398
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 146/328 (44%), Gaps = 78/328 (23%)
Query: 16 VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL---------- 65
V+KIW N+ P + +FQ+L + + C LK +F AS++ +L QLQ L
Sbjct: 1040 VEKIW--NEDPHGIL-NFQNLQSITIDECQSLKNLFPASLVRDLVQLQELHVLCCGIEEI 1096
Query: 66 ----------------ELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT- 108
++T+L L L +LR YPG H S WP+L+ L+V C K+ +F
Sbjct: 1097 VAKDNGVDTQATFVFPKVTSLELSYLHQLRSFYPGAHPSWWPSLKQLTVRECYKVNVFAF 1156
Query: 109 -----------------------------EDLSQNNENDQLGIPAQQPPLPLEKEGCL-- 137
E+L+ ++ D P Q P + L
Sbjct: 1157 ENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHNKDTEIWPEQFPVDSFPRLRVLDD 1216
Query: 138 ---------------EKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYH 182
E +L ++E+ L L L K++SK G L+ L V +
Sbjct: 1217 VIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPELTHLWKENSKPGLDLLSLKSLEVRN 1276
Query: 183 SQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242
L+ L+PSS+ SF+NLA L C L L++ S AK+LV+L +++ G M EVV
Sbjct: 1277 CVRLINLVPSSA-SFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGGSHMMEEVVA 1335
Query: 243 NDKDGVEKEEIVFCKLKTLQLFDLDSLT 270
N+ +G +EI FCKL+ + L L +LT
Sbjct: 1336 NE-EGEAADEIAFCKLQHMALKCLSNLT 1362
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 144/336 (42%), Gaps = 88/336 (26%)
Query: 15 NVDKIWH-YNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE------- 66
NV K+ H + + P FQ+L+ + V C L IF ++ ++ QLQ L
Sbjct: 116 NVPKLKHVWKEDPHDTM-RFQNLSEVSVEECTSLISIFPLTVARDMMQLQSLRVSNCGIE 174
Query: 67 -------------------LTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIF 107
LT +RL+ LPKL+ + G+H+ + +L+ + + C K+++F
Sbjct: 175 EIVAKEEGTNEIVNFVFSHLTFIRLELLPKLKAFFVGVHSLQCKSLKTIYLFGCPKIELF 234
Query: 108 TEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYR-----PY---- 156
+L +++ +D L I QP +E+ + I + Y PY
Sbjct: 235 KTELRHQESSRSDVLNISTYQPLFVIEESQYSGVQFNNVKHIDVCEFYTEEATFPYWFLK 294
Query: 157 -----------------------------------HLKQL-----------CKQDSKLGP 170
LKQL CK+ K+ P
Sbjct: 295 NVPSLESLLVQWSLFTEIFQGEQLISTEKETQISPRLKQLELGQLHRLQYICKEGFKMDP 354
Query: 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQ 230
I ++E + V H SL+ L+P SSV+F L L C LI+L+T STAK+LV+L ++
Sbjct: 355 ILHFIESINVNHCSSLIKLVP-SSVTFTYLTYLEVTSCNGLINLITYSTAKSLVKLTTMK 413
Query: 231 VYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266
+ C + ++V +D E +EI FC L++L+L L
Sbjct: 414 IKMCNLLEDIVNGKED--ETKEIEFCSLQSLELISL 447
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 40/272 (14%)
Query: 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQL 62
+P LE L +S+I + IWH A H +SL +V C KY+F+ SMI + +L
Sbjct: 920 VPTLEDLILSSIPCETIWHGELSTAC--SHLKSL---IVENCRDWKYLFTLSMIRSFIRL 974
Query: 63 QHLELTTLR-LQGLPKLRCLYP--GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQ 119
+ LE+ ++G+ + GM +P L L KLK ++ S +
Sbjct: 975 EKLEICNCEFMEGIIRTEEFSEEEGMIKLMFPRLNFL------KLKNLSDVSSLRIGHGL 1028
Query: 120 LGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILG 179
+ P+ ++ L+L R LK + ++ P Q +EIL
Sbjct: 1029 IECPS----------------------LRHLELNRLNDLKNIWSRNIHFDPFLQNVEILK 1066
Query: 180 VYHSQSLLIL-LPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238
V ++L L +PS+S F+NL L C ++I+LVTSS A ++V+LV + + C +T
Sbjct: 1067 VQFCENLTNLAMPSAS--FQNLTCLEVLHCSKVINLVTSSVATSMVQLVTMHIEDCDMLT 1124
Query: 239 EVVINDKDGVEKEEIVFCKLKTLQLFDLDSLT 270
+V ++KD EI+F KLKTL L L +LT
Sbjct: 1125 GIVADEKDETAG-EIIFTKLKTLALVRLQNLT 1155
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522570|ref|XP_003529919.1| PREDICTED: uncharacterized protein LOC100813151 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 92/351 (26%)
Query: 5 NLEALEISAI-NVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQ 63
NL+ +++S + ++++W + P + +F+ L + V+ C +L+ +F AS+ ++ +L+
Sbjct: 1139 NLQVVDVSYLPKLEQVWSRD--PGGIL-NFKKLQSIHVFSCHRLRNVFPASVAKDVPKLE 1195
Query: 64 HL----------------------------ELTTLRLQGLPKLRCLYPGMHTSEWPALEI 95
++ ELT ++L L ++ Y G H E P L+
Sbjct: 1196 YMSVSVCHGIVEIVACEDGSETNTEQLVFPELTDMKLCNLSSIQHFYRGRHPIECPKLKK 1255
Query: 96 LSVHRCD-KLKIFTEDLSQNNENDQLGIPAQQ--PPLPL------EKEGCLEKHLGKLAM 146
L V C+ KLK F ++NE D+ + A++ P L E + L + K M
Sbjct: 1256 LEVRECNKKLKTFGTG-ERSNEEDEAVMSAEKIFPNLEFLVIDFDEAQKWLLSNTVKHPM 1314
Query: 147 --IKELKLYRPYHLKQLCK-----------------------QDSKLG------------ 169
+KEL+L + ++LC+ +S+LG
Sbjct: 1315 HRLKELRLSKVNDGERLCQILYRMPNLEKLYLSSAKHLLKESSESRLGIVLQLKELGLYW 1374
Query: 170 -----------PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218
P+ Q LE+L +Y L+ L P SVS L L + C L +L+ SS
Sbjct: 1375 SEIKDIGFEREPVLQRLELLSLYQCHKLIYLAP-PSVSLAYLTNLEVWYCYGLRNLMASS 1433
Query: 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269
TAK+LV+L +++ GC + E+V +D+ E+E+IVF KL T++L L L
Sbjct: 1434 TAKSLVQLKSMKIRGCNELEEIV-SDEGNEEEEQIVFGKLITIELEGLKKL 1483
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 147/359 (40%), Gaps = 108/359 (30%)
Query: 16 VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL-------- 67
V+KIW N+ P + +FQ+L + + C LK +F AS++ +L QL+ LEL
Sbjct: 323 VEKIW--NKDPHGIL-NFQNLKSIFIDKCQSLKNLFPASLVKDLVQLEKLELRSCGIEEI 379
Query: 68 ------------------TTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIF-- 107
T+L L L +LR YPG HTS+WP L+ L V CDK+ +F
Sbjct: 380 VAKDNEAETAAKFVFPKVTSLILVNLHQLRSFYPGAHTSQWPLLKELIVRACDKVNVFAS 439
Query: 108 -TEDLSQNNENDQLGIPAQQP-------PLP------LEKEGCLE--------------- 138
T + + +P+ QP LP L G E
Sbjct: 440 ETPTFQRRHHEGSFDMPSLQPLFLLQQVALPYLEELILNDNGNTEIWQEQFPMDSFPRLR 499
Query: 139 -----KHLGKLAMIKELKLYRPYHLKQL-CKQDSKLGPIFQY------------------ 174
++ L +I L R ++L++L ++ S + IFQ
Sbjct: 500 YLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLEGLDEENQAQRLGRLREI 559
Query: 175 -------LEILGVYHSQSLLILLPSSSVSFRNLAKLVA----------------FGCKEL 211
L L +S+S+L L S+ N L++ + C L
Sbjct: 560 WLRDLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNL 619
Query: 212 IHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSLT 270
L++ S AK+LV+L K+++ G M EVV N+ G +EI F KL+ + L L +LT
Sbjct: 620 RSLISPSVAKSLVKLRKLKIGGLHMMEEVVANE-GGEAVDEIAFYKLQHMVLLCLPNLT 677
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504319|ref|XP_003622448.1| Resistance protein RGC2 [Medicago truncatula] gi|355497463|gb|AES78666.1| Resistance protein RGC2 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 140/336 (41%), Gaps = 93/336 (27%)
Query: 22 YNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL---------------- 65
+++ P +F Q L + V CD LKY+F AS+ +L +L+ L
Sbjct: 559 WDKDPEGIF-FLQVLQEMSVTECDNLKYLFPASVAKDLTRLKVLSATNCEELVEIFSKDE 617
Query: 66 -----------ELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQN 114
+LTT+ L LP+L+ YP +H EWPAL+ L H C+ L I ++
Sbjct: 618 IPAEGEIKEFPQLTTMHLINLPRLKYFYPRLHKLEWPALKELHAHPCN-LTILK--CRED 674
Query: 115 NENDQLGIPAQQPP------------------------------LPLEKEGCLEKHLGKL 144
+ DQ IP ++ P E + L LG L
Sbjct: 675 HPEDQALIPIEKIPSMDKLIVVIGDTLVRWNRWSSKLQFDKLQHFQEESDSVLHVFLGML 734
Query: 145 AMIKELKL-----------YRP-------------------YHLKQLCKQDSKLGPIFQY 174
I +L+ RP ++L + + S L I +
Sbjct: 735 PAIGKLEFDNCLVEEIFSPERPNADYKSVLLHLTEIELNNMFNLNSIGLEHSWLHSIPEN 794
Query: 175 LEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234
L+ L V + L+ L+P VSF +L L C +++L TSSTAK+L RL +++ C
Sbjct: 795 LKKLVVTNCGRLINLVP-DMVSFSSLKYLDVSICSGMLYLFTSSTAKSLCRLKVMKIESC 853
Query: 235 RAMTEVVINDKD-GVEKEEIVFCKLKTLQLFDLDSL 269
+M E+V + D E ++++F L+TL L DL L
Sbjct: 854 ESMQEIVSTEGDESGEDKKLIFEDLRTLFLKDLSKL 889
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 147 IKELKLYRPYHLKQLCKQDSKLG-PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVA 205
I++L L+ L+ + ++D L P+FQYLE L V + SL+ L+PSS+ SF NL L+
Sbjct: 1802 IRKLWLFELEKLEHIWQEDFPLNHPLFQYLEDLRVLNCPSLISLVPSST-SFTNLTYLIV 1860
Query: 206 FGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFD 265
CKELI+L+T STAK+LV+L + V C M +VV D++ E E IVF L+ L+
Sbjct: 1861 DNCKELIYLITYSTAKSLVQLKTLIVMNCEKMLDVVKIDEEKAE-ENIVFENLEYLEFTS 1919
Query: 266 LDSL 269
L SL
Sbjct: 1920 LSSL 1923
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 138 EKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF 197
E H LA ++EL+L LK L K++S +GP FQ LEIL ++ +L+ L+P SSVSF
Sbjct: 1079 ENHFRALARLRELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVP-SSVSF 1137
Query: 198 RNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCK 257
NLA L C LI+L+ AK+LV+ ++ M EVV N+ + +EI FCK
Sbjct: 1138 HNLASLDISYCCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANEGENA-GDEITFCK 1196
Query: 258 LKTLQLFDLDSLT 270
L+ ++L L +LT
Sbjct: 1197 LEEIELCVLPNLT 1209
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 152/364 (41%), Gaps = 98/364 (26%)
Query: 1 VALPNLEALEISAI-NVDKIWHYNQIPA------------------AVFP-----HFQSL 36
VA P+L+ L I + NV KIW NQIP +FP QSL
Sbjct: 1346 VAFPSLDCLYIEGLDNVKKIWP-NQIPQDSFSKLEVVKVASCGELLNIFPSCMLKRLQSL 1404
Query: 37 TRLVVWYCDKLKYIFSA---------SMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHT 87
RL V C L+ +F S +GN + ++T L L+ LP+LR YPG HT
Sbjct: 1405 ERLSVHVCSSLEAVFDVEGTNVNVDCSSLGNTNVVP--KITLLALRNLPQLRSFYPGAHT 1462
Query: 88 SEWPALEILSVHRCDKLKI--FTEDLSQNN--------ENDQLGI-------PAQQPPLP 130
S+WP L+ L+V C KL + F + + N E +LG+ P Q P
Sbjct: 1463 SQWPLLKYLTVEMCPKLDVLAFQQRHYEGNLDVAFPNLEELELGLNRDTEIWPEQFPMDS 1522
Query: 131 LEKEGCLE--KHLGKLAMIKELKLYRPYHLKQL-CKQDSKLGPIFQYLEILGVYHSQSL- 186
+ L+ + L +I L R ++L+ L + S + +FQ + ++ L
Sbjct: 1523 FPRLRVLDVYDYRDILVVIPSFMLQRLHNLEVLKVGRCSSVEEVFQLEGLDEENQAKRLG 1582
Query: 187 ------LILLPS----------SSVSFRNLAKLVAFGCKELIHLVTS------------- 217
L LP + ++L L CK+LI+LV S
Sbjct: 1583 QLREIKLDDLPGLTHLWKENSKPGLDLQSLESLEVLDCKKLINLVPSSVSFQNLATLDVQ 1642
Query: 218 -----------STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266
S AK+LV+L +++ G M EVV N+ G +EI F KL+ ++L L
Sbjct: 1643 SCGSLRSLISPSVAKSLVKLKTLKICGSDMMEEVVANEG-GEATDEITFYKLQHMELLYL 1701
Query: 267 DSLT 270
+LT
Sbjct: 1702 PNLT 1705
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00009683001 | SubName- Full=Chromosome undetermined scaffold_244, whole genome shotgun sequence; (359 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 270 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.68 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.47 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.16 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.13 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.84 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.74 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.66 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.32 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.21 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.13 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.04 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.95 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.95 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.85 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.8 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.76 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.74 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.73 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.72 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.66 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.65 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.58 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.57 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.53 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 97.5 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.45 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.36 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.17 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 96.99 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 96.78 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.61 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 96.56 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.55 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.12 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.77 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 95.69 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 95.5 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.09 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 94.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 94.92 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 94.43 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 94.08 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 93.86 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 93.57 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 93.28 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.11 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 91.48 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 90.81 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 90.72 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 90.69 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 90.47 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 90.26 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 90.24 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 90.16 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 87.18 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 86.84 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 86.49 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 82.92 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 80.09 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=154.14 Aligned_cols=239 Identities=21% Similarity=0.229 Sum_probs=119.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE----------------
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE---------------- 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~---------------- 66 (270)
+.+|++|++.+++++.+|.+ + . .+++|++|++++|..++.++. ++.+++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~--~----~-~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG--V----H-SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred ccCCcEEECcCccccccccc--c----c-cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhc
Confidence 45777777777767776654 1 1 455555555555554444422 33444444443
Q ss_pred ---eeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCC------CCC---CCCCCCCccc
Q 038160 67 ---LTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLG------IPA---QQPPLPLEKE 134 (270)
Q Consensus 67 ---L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~------~~~---~~~l~~~~~~ 134 (270)
|+.|++++|.+++.++.. ..+++|+.|++++|..++.+|... .+++.++.. +|. +..+..+...
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCcccccccccccccccccccc
Confidence 233466677777666543 256777888888887776665321 122222211 110 0000000000
Q ss_pred ccc-----ccC-------cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcE
Q 038160 135 GCL-----EKH-------LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAK 202 (270)
Q Consensus 135 ~c~-----e~~-------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~ 202 (270)
.|. +.. ....++|+.|++++|+.+..+.. ....+++|+.|++++|..++.++.. ..+++|++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~ 829 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS----SIQNLHKLEHLEIENCINLETLPTG--INLESLES 829 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccCh----hhhCCCCCCEEECCCCCCcCeeCCC--CCccccCE
Confidence 000 000 00134555566665555444321 1234556666666666655554322 24556666
Q ss_pred EEeeCCcCCcccC------------------ChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecC
Q 038160 203 LVAFGCKELIHLV------------------TSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 203 L~i~~c~~l~~l~------------------~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
|++++|.+++.+. .+.....+++|+.|++.+|++++.+.. ....+++|+.+.+.
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFS 901 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecC
Confidence 6666665544321 112345567777777777777766532 11245667777777
Q ss_pred CCCCC
Q 038160 265 DLDSL 269 (270)
Q Consensus 265 ~~~~L 269 (270)
+|++|
T Consensus 902 ~C~~L 906 (1153)
T PLN03210 902 DCGAL 906 (1153)
T ss_pred CCccc
Confidence 77665
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=133.01 Aligned_cols=95 Identities=22% Similarity=0.177 Sum_probs=70.1
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCC-----
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKD----- 246 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~----- 246 (270)
.++|++|++++|+.+..++.. ...+++|+.|++.+|.+++.+... .++++|+.|++++|..+..+......
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCEeE
Confidence 468999999999888776444 778999999999999999876432 26889999999999887654311100
Q ss_pred -------CCccceeecCccCeeecCCCCCCC
Q 038160 247 -------GVEKEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 247 -------~~~~~~~~~~~L~~L~l~~~~~L~ 270 (270)
..+.....+++|+.|.+.+|++|+
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 001112258899999999998874
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=113.94 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=42.1
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|++++|..... .|.....+++|++|++.++.-... .+.....+++|+.|++++|.-..++ +..
T Consensus 283 l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~--------p~~ 351 (968)
T PLN00113 283 LQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEI--------PKN 351 (968)
T ss_pred ccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcC--------ChH
Confidence 55666666665542222 233244556666666665533221 1223455666666666666421111 111
Q ss_pred eeecCccCeeecCCC
Q 038160 252 EIVFCKLKTLQLFDL 266 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~ 266 (270)
...+++|+.|++.++
T Consensus 352 l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 352 LGKHNNLTVLDLSTN 366 (968)
T ss_pred HhCCCCCcEEECCCC
Confidence 124567777777654
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=112.73 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++|. +..... .....+++|++|+++++...... +.....+++|+.|++.+|.-... .+.....+
T Consensus 283 l~~L~~L~Ls~n~-l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~~ 355 (968)
T PLN00113 283 LQKLISLDLSDNS-LSGEIP---ELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGE--IPKNLGKH 355 (968)
T ss_pred ccCcCEEECcCCe-eccCCC---hhHcCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCc--CChHHhCC
Confidence 6788888888773 221111 12335789999999987644433 44466789999999998864322 23456778
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
++|+.|+++++. +.... +.....+++|+.|.+.++
T Consensus 356 ~~L~~L~Ls~n~-l~~~~-------p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 356 NNLTVLDLSTNN-LTGEI-------PEGLCSSGNLFKLILFSN 390 (968)
T ss_pred CCCcEEECCCCe-eEeeC-------ChhHhCcCCCCEEECcCC
Confidence 999999999984 22211 111123567888777653
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-11 Score=105.42 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=144.4
Q ss_pred CccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 5 NLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 5 ~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
.||+|.++| -.+..-- .-... +.+||+++|.+++|+++++....+....++.|+++ .+..|++++....
T Consensus 139 ~lk~LSlrG~r~v~~ss----lrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l-----~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS----LRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL-----NLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcch----hhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh-----hhcccchhHHHHH
Confidence 477888887 4443310 10111 27899999999999988876556667788888777 6778999988777
Q ss_pred CccccCCCcccEEEeccCCCceeec-----ccccccccCCCC-CCCC--CC----------CCCCCcccccc----ccCc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFT-----EDLSQNNENDQL-GIPA--QQ----------PPLPLEKEGCL----EKHL 141 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~-----~~~~~~~~~~~~-~~~~--~~----------~l~~~~~~~c~----e~~~ 141 (270)
+.....||+|++|+++.|+.++.-. .+ ...+..... .+.. .+ .+...+--+|. ++..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG-~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRG-CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhcc-chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 6666679999999999999876411 00 000000000 0000 00 00000000110 0000
Q ss_pred ---CCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCCh
Q 038160 142 ---GKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 142 ---~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
--+..|+.|..++|..+.+.... ..+...++|+.+.+..|..+.+... ....+++.|+.+++.+|....+....
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLW--ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHH--HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 00445566666666554432110 1123357888888888877765442 23456788888888888776665334
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 270 (270)
+.+.+++.|+.+.++.|..+.+-.+.-.+... =....|..+.+.+||..+
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~---c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSS---CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhcc---ccccccceeeecCCCCch
Confidence 45677888888888888765544211100000 034568888888888653
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-11 Score=102.88 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=150.7
Q ss_pred CCCCccEEEEec-ccccee-cccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcc
Q 038160 2 ALPNLEALEISA-INVDKI-WHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLR 79 (270)
Q Consensus 2 ~~~~L~~L~l~~-~~l~~~-~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~ 79 (270)
+.|+.++|.+.+ .+++.. ... +. . .+++|++|.+..|.+++..........+++|++| +++.|+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~s--la-~---~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~l-----NlSwc~qi~ 230 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLS--LA-R---YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYL-----NLSWCPQIS 230 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHH--HH-H---hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHh-----hhccCchhh
Confidence 578999999998 777652 211 11 1 6899999999999999887655567788998887 677888877
Q ss_pred eecCCccccCCCcccEEEeccCCCcee--ecc--cccccccCCC--C-----C---------CCCCCCCCCCccccc---
Q 038160 80 CLYPGMHTSEWPALEILSVHRCDKLKI--FTE--DLSQNNENDQ--L-----G---------IPAQQPPLPLEKEGC--- 136 (270)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~--~~~~~~~~~~--~-----~---------~~~~~~l~~~~~~~c--- 136 (270)
+-........+..++++..++|..+.. +.. ...+.+..+. . + ...++.+ ..-.|
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l---~~s~~t~~ 307 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL---CYSSCTDI 307 (483)
T ss_pred cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh---cccCCCCC
Confidence 632222223355566666667765431 100 0000000000 0 0 0001111 11112
Q ss_pred ----cccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhh-cCCCcccCcCCcEEEeeCCcCC
Q 038160 137 ----LEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLIL-LPSSSVSFRNLAKLVAFGCKEL 211 (270)
Q Consensus 137 ----~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~L~~L~i~~c~~l 211 (270)
+..+....++|+.+-+.+|.++..... ...+...++|+.+.+.+|....+- ..+...+++.|+.+.++.|.-+
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f--t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGF--TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhh--hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 111223478999999999998665432 123345789999999998765543 2334578999999999999887
Q ss_pred cccCChh---HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCCCC
Q 038160 212 IHLVTSS---TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269 (270)
Q Consensus 212 ~~l~~~~---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 269 (270)
++-.... .......|..+.+.+|+.+.+..- ......++|+.+.+.+|.+.
T Consensus 386 tD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-------e~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 386 TDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-------EHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhhccccccccceeeecCCCCchHHHH-------HHHhhCcccceeeeechhhh
Confidence 7752211 123456788999999997765521 11236789999999888764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-08 Score=92.28 Aligned_cols=91 Identities=23% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccC--ChhHHh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLV--TSSTAK 221 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~--~~~~~~ 221 (270)
.++|+.|++++- +++.+-. +....++.|++|.++. +.++++....+..+.+|+.|+++.. .+...+ ....+.
T Consensus 316 tqkL~~LdLs~N-~i~~l~~---~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 316 TQKLKELDLSSN-RITRLDE---GSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFN 389 (873)
T ss_pred cccceeEecccc-ccccCCh---hHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhc
Confidence 667777777665 3443321 1123466777777775 3344444333445666777766642 222111 111234
Q ss_pred hccCCcEEEEecCCCcceEe
Q 038160 222 TLVRLVKVQVYGCRAMTEVV 241 (270)
Q Consensus 222 ~l~~L~~L~i~~c~~l~~~~ 241 (270)
.+++|++|.+.|. +++.|.
T Consensus 390 gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 390 GLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred cchhhhheeecCc-eeeecc
Confidence 4777777777776 355553
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.2e-07 Score=86.04 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCCccEEEEeccc--cceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAIN--VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~--l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.|+|.+|-+.++. +.. ++...+-.+|.|+.|++++|.++.++|.. ++.|.+|++|+
T Consensus 544 ~~~L~tLll~~n~~~l~~------is~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~ 601 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE------ISGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLD 601 (889)
T ss_pred CCccceEEEeecchhhhh------cCHHHHhhCcceEEEECCCCCccCcCChH--Hhhhhhhhccc
Confidence 3456666666643 222 22222225777888888877777776444 77777777776
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=80.39 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=27.4
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
++|+.|.+++|. ++.++.. ..++|+.|+++++ ++..+ +..+ .++|+.|++++|
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~---l~~sL~~L~Ls~N-~L~~L-P~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPAS---LPPELQVLDVSKN-QITVL-PETL---PPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCCc-cccCChh---hcCcccEEECCCC-CCCcC-Chhh---cCCcCEEECCCC
Confidence 466666666653 3333222 1256777777765 33332 1111 246777777776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-07 Score=79.97 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=42.3
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcch----hhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSL----LILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
+++|++|++.+|. +..-.... .......++|++|++++|.-- ..+. .....+++|++|++++|+ +.+.....
T Consensus 164 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~~~~~~~L~~L~ls~n~-l~~~~~~~ 240 (319)
T cd00116 164 NRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-ETLASLKSLEVLNLGDNN-LTDAGAAA 240 (319)
T ss_pred CCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-HHhcccCCCCEEecCCCc-CchHHHHH
Confidence 4567777776652 22100000 000112347777777776421 1111 113346677777777763 44322222
Q ss_pred HHhhc----cCCcEEEEecC
Q 038160 219 TAKTL----VRLVKVQVYGC 234 (270)
Q Consensus 219 ~~~~l----~~L~~L~i~~c 234 (270)
++..+ +.|+.|++++|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHhccCCCceEEEccCC
Confidence 33332 57777777777
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.8e-07 Score=80.94 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEe--------eeEEeccC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL--------TTLRLQGL 75 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L--------~~L~L~~~ 75 (270)
+++++|+|.++.++.+-.+ .|.+|.+|-+|.+++. .++-+ |...+..|++|+.|+| +.+.+.++
T Consensus 173 ~ni~~L~La~N~It~l~~~------~F~~lnsL~tlkLsrN-rittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETG------HFDSLNSLLTLKLSRN-RITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCceEEeeccccccccccc------cccccchheeeecccC-ccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 4689999999888875332 3336778888888764 45544 4444677888887772 23445555
Q ss_pred CCccee
Q 038160 76 PKLRCL 81 (270)
Q Consensus 76 ~~L~~~ 81 (270)
++++.+
T Consensus 245 ~Sl~nl 250 (873)
T KOG4194|consen 245 PSLQNL 250 (873)
T ss_pred hhhhhh
Confidence 555544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=76.53 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
.++|+.|++.+| +++.+.. ...++|+.|++++|. ++.++.. ..++|++|++++| ++..+. ..+.
T Consensus 324 ~~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N~-L~~LP~~---lp~~L~~LdLs~N-~Lt~LP-~~l~--- 387 (754)
T PRK15370 324 PPGLKTLEAGEN-ALTSLPA------SLPPELQVLDVSKNQ-ITVLPET---LPPTITTLDVSRN-ALTNLP-ENLP--- 387 (754)
T ss_pred cccceeccccCC-ccccCCh------hhcCcccEEECCCCC-CCcCChh---hcCCcCEEECCCC-cCCCCC-HhHH---
Confidence 467888888887 3544321 124789999999974 5544322 2479999999987 465542 2222
Q ss_pred cCCcEEEEecCCCcceE
Q 038160 224 VRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~ 240 (270)
.+|+.|+++++. +..+
T Consensus 388 ~sL~~LdLs~N~-L~~L 403 (754)
T PRK15370 388 AALQIMQASRNN-LVRL 403 (754)
T ss_pred HHHHHHhhccCC-cccC
Confidence 368888888873 4443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.8e-08 Score=80.03 Aligned_cols=89 Identities=21% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
-++|..|+++||..--..-.- .......|+|.+|++++|..+++-....+..|+-|++|.+++|..+.--. .-.+.+.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~-~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET-LLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH-eeeeccC
Confidence 456777888887642111100 01123468888888888877765333335678888888888887642100 0123567
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
|+|++|++.||
T Consensus 363 psl~yLdv~g~ 373 (419)
T KOG2120|consen 363 PSLVYLDVFGC 373 (419)
T ss_pred cceEEEEeccc
Confidence 88888888887
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=70.67 Aligned_cols=75 Identities=27% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccC
Q 038160 146 MIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVR 225 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 225 (270)
+|+.|+++++ +++.+.. ..++|+.|+++++ .+..+ |. ..++|+.|+++++ +++.+.. ..++
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~-------lp~~L~~L~Ls~N-~L~~L-P~---l~~~L~~LdLs~N-~Lt~LP~-----l~s~ 403 (788)
T PRK15387 343 GLQELSVSDN-QLASLPT-------LPSELYKLWAYNN-RLTSL-PA---LPSGLKELIVSGN-RLTSLPV-----LPSE 403 (788)
T ss_pred ccceEecCCC-ccCCCCC-------CCcccceehhhcc-ccccC-cc---cccccceEEecCC-cccCCCC-----cccC
Confidence 5666666654 3443211 1245666666553 24333 22 2346777777754 4443321 1246
Q ss_pred CcEEEEecCCCcceE
Q 038160 226 LVKVQVYGCRAMTEV 240 (270)
Q Consensus 226 L~~L~i~~c~~l~~~ 240 (270)
|+.|+++++. +..+
T Consensus 404 L~~LdLS~N~-LssI 417 (788)
T PRK15387 404 LKELMVSGNR-LTSL 417 (788)
T ss_pred CCEEEccCCc-CCCC
Confidence 7778887763 4443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.8e-07 Score=75.21 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
.+|++.+|++++|..++.-.. .+...++.|++|.++.|+.+..--.-....-|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHH---HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 399999999999988765211 123458999999999999774321112556799999999987
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.6e-06 Score=75.88 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=32.4
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhH-----HhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSST-----AKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~-----~~~l~~L~~L~i~~c~ 235 (270)
.+..|++|+|++...+.--.....+.||.|+.|+++.|. +.++..++. ...+++|++|.|...+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 355666666666443322111124556666666666552 333322222 3445666666666653
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8e-07 Score=81.13 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=9.9
Q ss_pred CCCCCEEEecCcccc
Q 038160 144 LAMIKELKLYRPYHL 158 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l 158 (270)
+++|++|++++|.++
T Consensus 294 ~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGL 308 (482)
T ss_pred cCcccEEeeecCccc
Confidence 566667777666665
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.6e-05 Score=48.72 Aligned_cols=54 Identities=31% Similarity=0.486 Sum_probs=37.4
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
|+|++|++++++++.+ |.+.+..+++|++|++.++ .++.+ ++..+.++++|++|
T Consensus 1 p~L~~L~l~~n~l~~i------~~~~f~~l~~L~~L~l~~N-~l~~i-~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI------PPDSFSNLPNLETLDLSNN-NLTSI-PPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSSTESEE------CTTTTTTGTTESEEEETSS-SESEE-ETTTTTTSTTESEE
T ss_pred CcCcEEECCCCCCCcc------CHHHHcCCCCCCEeEccCC-ccCcc-CHHHHcCCCCCCEE
Confidence 6788899988888774 3333337888999998864 56665 33446666666665
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.4e-05 Score=77.96 Aligned_cols=187 Identities=24% Similarity=0.268 Sum_probs=96.3
Q ss_pred CCCCccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE--------e
Q 038160 2 ALPNLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR--------L 72 (270)
Q Consensus 2 ~~~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~--------L 72 (270)
.+|.|+.|++++ ..+.+ +|..++ .+-+||+|++++. .++++|.. +++|+.|.+|++...+ +
T Consensus 569 ~m~~LrVLDLs~~~~l~~------LP~~I~-~Li~LryL~L~~t-~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSK------LPSSIG-ELVHLRYLDLSDT-GISHLPSG--LGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hCcceEEEECCCCCccCc------CChHHh-hhhhhhcccccCC-CccccchH--HHHHHhhheeccccccccccccchh
Confidence 478899999997 44443 677776 8889999888874 56666433 7888888887733211 1
Q ss_pred ccCCCcceecCCc-----------cccCCCcccEEEeccCCC-----------ceeecccccccccCCCCCCCCCCCCCC
Q 038160 73 QGLPKLRCLYPGM-----------HTSEWPALEILSVHRCDK-----------LKIFTEDLSQNNENDQLGIPAQQPPLP 130 (270)
Q Consensus 73 ~~~~~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~-----------l~~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (270)
..+.+|+.+.... ....+..|+.+.+..+.. +........ ..... .. .
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~--~~~~~--~~---~--- 708 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS--IEGCS--KR---T--- 708 (889)
T ss_pred hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh--hcccc--cc---e---
Confidence 1133333221100 011244444444444332 111110000 00000 00 0
Q ss_pred CccccccccCcCCCCCCCEEEecCcccccccccc-ccccccc-ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 131 LEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ-DSKLGPI-FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 131 ~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
.......+.+|+.|.|.+|...+..... ....... ++++..+.+.+|+..+... +....|+|++|++..|
T Consensus 709 ------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~--~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 709 ------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT--WLLFAPHLTSLSLVSC 780 (889)
T ss_pred ------eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc--hhhccCcccEEEEecc
Confidence 0000122777888888888665432211 0111122 5566666677776665532 2245677888888888
Q ss_pred cCCcccCC
Q 038160 209 KELIHLVT 216 (270)
Q Consensus 209 ~~l~~l~~ 216 (270)
+.+++..+
T Consensus 781 ~~~e~~i~ 788 (889)
T KOG4658|consen 781 RLLEDIIP 788 (889)
T ss_pred cccccCCC
Confidence 77776543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00021 Score=68.72 Aligned_cols=55 Identities=22% Similarity=0.137 Sum_probs=31.9
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
++|+.|+++++. +..++ . .+.+|+.|+++++ +++.+ +..+..+++|+.|++++++
T Consensus 402 s~L~~LdLS~N~-LssIP-~---l~~~L~~L~Ls~N-qLt~L--P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLP-M---LPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCC-c---chhhhhhhhhccC-ccccc--ChHHhhccCCCeEECCCCC
Confidence 466677777653 44332 2 2345666666653 45543 2234567788888888774
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=3e-05 Score=50.00 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=28.3
Q ss_pred ccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 174 YLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 174 ~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+|++|++++| .++.+++..+..+++|++|++++ .+++.+. +..+..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccC-HHHHcCCCCCCEEeCcCC
Confidence 4455555554 34444444344555555555552 3344332 233455555555555554
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.8e-06 Score=71.12 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=42.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC-----CcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-----SSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
++.|++|++++-..+.. .. ......++.|..|.++.|.--.--.+. ....||+|++|++.+. ++.+.-+..
T Consensus 245 ~~~L~~LdLs~N~li~~--~~-~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~ 320 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDF--DQ-GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLN 320 (505)
T ss_pred hhHHhhccccCCccccc--cc-ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccc
Confidence 55667777766543332 11 112334677777777765422111122 1345777777777754 333332222
Q ss_pred HHhhccCCcEEEEec
Q 038160 219 TAKTLVRLVKVQVYG 233 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~ 233 (270)
-...+++|+.|.+..
T Consensus 321 ~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLRTLENLKHLRITL 335 (505)
T ss_pred hhhccchhhhhhccc
Confidence 334445555555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00026 Score=62.92 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=40.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
.+.++++|++++| .++.++. -..+|+ +|.+++|.+++.++. .-.++|++|.+++|+++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLt-----sL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELT-----EITIENCNNLTTLPG----SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCc-----EEEccCCCCcccCCc----hhhhhhhheEccCcccccccc
Confidence 4677888888888 6666531 112343 446778888766543 113578888888887777666
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.7e-06 Score=79.14 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+.-|.+|+|+.++++. .|.+.- .-.|+-.|.+++. ++..+ |...+-+|.-|-+|+
T Consensus 102 l~dLt~lDLShNqL~E------vP~~LE-~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE------VPTNLE-YAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLD 156 (1255)
T ss_pred cccceeeecchhhhhh------cchhhh-hhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhc
Confidence 4556777777777765 444433 4566667777653 34433 544555555555553
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.5e-06 Score=79.25 Aligned_cols=43 Identities=35% Similarity=0.515 Sum_probs=25.0
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCC
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
...+|+.|.+..| .++++++. .+.+++|++|+|....|..+|.
T Consensus 285 ~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 285 RITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred hhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhccccccch
Confidence 3344444444443 35555443 4567888888777666666665
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=62.98 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=75.3
Q ss_pred eeEEeccCCCcceecCCccccCCC-cccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCC
Q 038160 68 TTLRLQGLPKLRCLYPGMHTSEWP-ALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAM 146 (270)
Q Consensus 68 ~~L~L~~~~~L~~~~~~~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~ 146 (270)
+.|++++| .++.++ .+| +|++|.+++|.+++.+|... .++
T Consensus 55 ~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~~L--------------------------------P~n 95 (426)
T PRK15386 55 GRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPGSI--------------------------------PEG 95 (426)
T ss_pred CEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCchh--------------------------------hhh
Confidence 34467777 666654 255 58888888888887766211 457
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|++.+|.++..+ .++|+.|++.. .....+ + .--++|++|.+.++........+ ..-.++|
T Consensus 96 Le~L~Ls~Cs~L~sL----------P~sLe~L~L~~-n~~~~L-~---~LPssLk~L~I~~~n~~~~~~lp--~~LPsSL 158 (426)
T PRK15386 96 LEKLTVCHCPEISGL----------PESVRSLEIKG-SATDSI-K---NVPNGLTSLSINSYNPENQARID--NLISPSL 158 (426)
T ss_pred hhheEccCccccccc----------ccccceEEeCC-CCCccc-c---cCcchHhheeccccccccccccc--cccCCcc
Confidence 888888888776543 24577777753 222211 1 11246778887544322111111 0112589
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.|.|++|..+. .. + ..-.+|++|++.+.
T Consensus 159 k~L~Is~c~~i~-LP--~--------~LP~SLk~L~ls~n 187 (426)
T PRK15386 159 KTLSLTGCSNII-LP--E--------KLPESLQSITLHIE 187 (426)
T ss_pred cEEEecCCCccc-Cc--c--------cccccCcEEEeccc
Confidence 999999997442 10 0 02257888876553
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=1.3e-05 Score=69.30 Aligned_cols=214 Identities=16% Similarity=0.055 Sum_probs=104.7
Q ss_pred CCCccEEEEeccccc---eecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccc---cceeEeeeEEeccCC
Q 038160 3 LPNLEALEISAINVD---KIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQ---LQHLELTTLRLQGLP 76 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~---~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~---L~~L~L~~L~L~~~~ 76 (270)
.++|++|+++++.+. ..|.. ++..+. .+++|+.|++++|.--... ...++.+.+ |++| +++++.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~--~~~~l~-~~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L-----~ls~~~ 119 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQS--LLQGLT-KGCGLQELDLSDNALGPDG--CGVLESLLRSSSLQEL-----KLNNNG 119 (319)
T ss_pred CCCceEEeccccccCCcchHHHH--HHHHHH-hcCceeEEEccCCCCChhH--HHHHHHHhccCcccEE-----EeeCCc
Confidence 567888888875444 12222 233333 5779999999887543222 112333333 6655 555543
Q ss_pred CcceecCC---ccccCC-CcccEEEeccCCCcee-----ecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCC
Q 038160 77 KLRCLYPG---MHTSEW-PALEILSVHRCDKLKI-----FTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA 145 (270)
Q Consensus 77 ~L~~~~~~---~~~~~~-~~L~~L~i~~c~~l~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~ 145 (270)
+...... .....+ ++|++|++++|. ++. +.... ...++.++..--.+ .. ...+.+.......+
T Consensus 120 -~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~-~~~~~l~~~l~~~~ 193 (319)
T cd00116 120 -LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGI---GD-AGIRALAEGLKANC 193 (319)
T ss_pred -cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCC---ch-HHHHHHHHHHHhCC
Confidence 2110000 011234 778888888885 321 11000 11222222110000 00 00000000011256
Q ss_pred CCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhcC-CCcc----cCcCCcEEEeeCCcCCcccCCh--
Q 038160 146 MIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILLP-SSSV----SFRNLAKLVAFGCKELIHLVTS-- 217 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~----~~~~L~~L~i~~c~~l~~l~~~-- 217 (270)
+|+.|++++|. +....... ......+++|++|++++|. +.+... .... ..+.|++|++.+|. +++....
T Consensus 194 ~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l 270 (319)
T cd00116 194 NLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDL 270 (319)
T ss_pred CCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHH
Confidence 99999999983 33211100 0112347899999999975 332110 1011 24799999999884 4322111
Q ss_pred -hHHhhccCCcEEEEecCC
Q 038160 218 -STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 218 -~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|+.++++++.
T Consensus 271 ~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 271 AEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhcCCCccEEECCCCC
Confidence 223445789999999984
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.4e-05 Score=73.36 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=92.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+.+|++|.+..+++..+... . +.+|.|+.+.++.. +++.-.-+.-+-.+.-|..|+ |++- +|+..+
T Consensus 54 lqkLEHLs~~HN~L~~vhGE------L-s~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lD-----LShN-qL~EvP 119 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGE------L-SDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILD-----LSHN-QLREVP 119 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhh------h-ccchhhHHHhhhcc-ccccCCCCchhcccccceeee-----cchh-hhhhcc
Confidence 55788888888877775322 1 37888888888763 454322121244566555554 3332 222222
Q ss_pred CCccccCCCcccEEEeccCCCceeeccccccccc---CCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNE---NDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
..- ..-.++-.|++++. ++..+|......+. .++..-..++.+-+ + .-.+.+|++|.+++-+ |.
T Consensus 120 ~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q--------~RRL~~LqtL~Ls~NP-L~ 186 (1255)
T KOG0444|consen 120 TNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPP-Q--------IRRLSMLQTLKLSNNP-LN 186 (1255)
T ss_pred hhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCH-H--------HHHHhhhhhhhcCCCh-hh
Confidence 211 11234555666654 34444422100111 11100000000000 0 0014455555655543 22
Q ss_pred ccccccccccccccccceEEEecCcch-hhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSL-LILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
+...+. .+.+.+|+.|.+++-..- .+++++ ...+.||+.++++ |++|..+ +.....+++|+.|.+++.. ++
T Consensus 187 hfQLrQ---LPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS-~N~Lp~v--Pecly~l~~LrrLNLS~N~-it 258 (1255)
T KOG0444|consen 187 HFQLRQ---LPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLS-ENNLPIV--PECLYKLRNLRRLNLSGNK-IT 258 (1255)
T ss_pred HHHHhc---CccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccc-ccCCCcc--hHHHhhhhhhheeccCcCc-ee
Confidence 111111 233555666666654322 233333 5556666666666 5555432 3344566667776666652 44
Q ss_pred eE
Q 038160 239 EV 240 (270)
Q Consensus 239 ~~ 240 (270)
++
T Consensus 259 eL 260 (1255)
T KOG0444|consen 259 EL 260 (1255)
T ss_pred ee
Confidence 44
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=1.7e-05 Score=72.45 Aligned_cols=94 Identities=19% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCCCEEEecCc-ccccccccccccccccccccceEEEecCcchhhhcCC-CcccCcCCcEEEeeCCcCCcccCChhHHh
Q 038160 144 LAMIKELKLYRP-YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-SSVSFRNLAKLVAFGCKELIHLVTSSTAK 221 (270)
Q Consensus 144 ~~~L~~L~i~~c-~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 221 (270)
.+.|++|++.+| .................++|+.+++++|..+.+.... ....+++|++|.+.+|..+++......+.
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 666777776663 2211111000112223466677777766654433211 12236677777766677666655555666
Q ss_pred hccCCcEEEEecCCCc
Q 038160 222 TLVRLVKVQVYGCRAM 237 (270)
Q Consensus 222 ~l~~L~~L~i~~c~~l 237 (270)
.+++|++|++++|..+
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 6777777777777655
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=2.8e-05 Score=60.43 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=93.6
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+.+...|.++.. +++.++|. ++.+.+||.|+ +++ ..++.++.. ...+|+|+.|++.-. .+..+|.+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln-----~~n-nqie~lp~~--issl~klr~lnvgmn-rl~~lprg- 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLN-----LSN-NQIEELPTS--ISSLPKLRILNVGMN-RLNILPRG- 97 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhh-----ccc-chhhhcChh--hhhchhhhheecchh-hhhcCccc-
Confidence 6677777888764 56666555 78888888774 333 233444432 255777777776533 45555532
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
++.+|.|+.|++.+- ++.+-.. ++-...+..|+.|++++ .+.+.+++
T Consensus 98 -----------------------------fgs~p~levldltyn-nl~e~~l--pgnff~m~tlralyl~d-ndfe~lp~ 144 (264)
T KOG0617|consen 98 -----------------------------FGSFPALEVLDLTYN-NLNENSL--PGNFFYMTTLRALYLGD-NDFEILPP 144 (264)
T ss_pred -----------------------------cCCCchhhhhhcccc-ccccccC--CcchhHHHHHHHHHhcC-CCcccCCh
Confidence 123777777776654 3332111 11233567788888876 34666666
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+ .+.+.+|+.|.+.+..=+ . .+-..+.+..|++|+|.+.
T Consensus 145 d-vg~lt~lqil~lrdndll-~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 145 D-VGKLTNLQILSLRDNDLL-S--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred h-hhhhcceeEEeeccCchh-h--CcHHHHHHHHHHHHhcccc
Confidence 6 777888888888875432 2 2334677888888888886
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00026 Score=61.99 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=42.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.++++.+|++++++++. +|.++. -+.+|++|++++. .+..+++. +|++ +|+.|.
T Consensus 250 ~L~~l~vLDLRdNklke------~Pde~c-lLrsL~rLDlSNN-~is~Lp~s--Lgnl-hL~~L~ 303 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKE------VPDEIC-LLRSLERLDLSNN-DISSLPYS--LGNL-HLKFLA 303 (565)
T ss_pred ccccceeeecccccccc------CchHHH-HhhhhhhhcccCC-ccccCCcc--cccc-eeeehh
Confidence 57889999999999986 566666 7889999999874 67776555 6777 777665
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0013 Score=51.97 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=9.2
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
++++|+|.|+.++.|-. +.. .+.+|++|+++++ .++.+. .+..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~---L~~----~l~~L~~L~Ls~N-~I~~l~---~l~~L~~L~~L~ 70 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN---LGA----TLDKLEVLDLSNN-QITKLE---GLPGLPRLKTLD 70 (175)
T ss_dssp ----------------S-----T----T-TT--EEE-TTS---S--T---T----TT--EEE
T ss_pred ccccccccccccccccc---hhh----hhcCCCEEECCCC-CCcccc---CccChhhhhhcc
Confidence 45666666666665411 110 3566666666664 344332 144455555554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00045 Score=65.93 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
||+|++|.+.|..+..-+-. ..+.+||||..|+++++ +++.+ .+++.|++||.|.++.|++.....+..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~L- 216 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESYQDLIDL- 216 (699)
T ss_pred CcccceEEecCceecchhHH-----HHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCchhhHHHH-
Confidence 78888888887444331110 11127899999999885 45543 5678888888886665555554444433
Q ss_pred CCccccCCCcccEEEeccCCC
Q 038160 83 PGMHTSEWPALEILSVHRCDK 103 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~ 103 (270)
..+.+|+.|+|+.-.+
T Consensus 217 -----F~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 217 -----FNLKKLRVLDISRDKN 232 (699)
T ss_pred -----hcccCCCeeecccccc
Confidence 3467777888777654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.00038 Score=66.43 Aligned_cols=113 Identities=17% Similarity=0.089 Sum_probs=56.0
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+|+|++|.|.+..-...-+ ......+|+|..|+|++++ ++++ .+..++.||+.|.+.+..--.. .......+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknLq~L~mrnLe~e~~-~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTN-ISNL--SGISRLKNLQVLSMRNLEFESY-QDLIDLFN 218 (699)
T ss_pred hCcccceEEecCceecchhH---HHHhhccCccceeecCCCC-ccCc--HHHhccccHHHHhccCCCCCch-hhHHHHhc
Confidence 37777777776652111100 1123357777777777653 3332 2345666666666665433221 11112345
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
+.+|+.|+|++-....+-..-+. -.+- ..++|+|+.|+..
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~q-Ylec-~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQ-YLEC-GMVLPELRFLDCS 258 (699)
T ss_pred ccCCCeeeccccccccchHHHHH-HHHh-cccCccccEEecC
Confidence 77788888887643221100000 0000 1258888888765
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0019 Score=50.96 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+|+.|+++++ +++.+- ..+.+++|++|++++. .++.+.......+|+|++|++.+ +++.++-.......+
T Consensus 41 l~~L~~L~Ls~N-~I~~l~-----~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLE-----GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSL 112 (175)
T ss_dssp -TT--EEE-TTS---S--T-----T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred hcCCCEEECCCC-CCcccc-----CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence 667788888777 344331 1234677888888763 34443211112477888888764 345554333344567
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++.+.|
T Consensus 113 ~~L~~L~L~~NP 124 (175)
T PF14580_consen 113 PKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-G
T ss_pred CCcceeeccCCc
Confidence 778888877765
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0024 Score=38.12 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCcccc
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYI 50 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~ 50 (270)
++|++|++++++++.+ |..+. .+++|++|+++++ .++++
T Consensus 1 ~~L~~L~l~~N~i~~l------~~~l~-~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL------PPELS-NLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSH------GGHGT-TCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCccc------CchHh-CCCCCCEEEecCC-CCCCC
Confidence 5899999999988874 33343 8999999999987 45554
|
... |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.00026 Score=55.12 Aligned_cols=90 Identities=26% Similarity=0.445 Sum_probs=43.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
+||-|+.|++.++++.. +.+|..+| .+..|+.|++.+. +.+.+++. +|++++||.|.++.-++-.+|+
T Consensus 100 s~p~levldltynnl~e----~~lpgnff-~m~tlralyl~dn-dfe~lp~d--vg~lt~lqil~lrdndll~lpk---- 167 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNE----NSLPGNFF-YMTTLRALYLGDN-DFEILPPD--VGKLTNLQILSLRDNDLLSLPK---- 167 (264)
T ss_pred CCchhhhhhcccccccc----ccCCcchh-HHHHHHHHHhcCC-CcccCChh--hhhhcceeEEeeccCchhhCcH----
Confidence 34444444444433332 11333333 3344444444332 33333333 5677777776555444444332
Q ss_pred cCCccccCCCcccEEEeccCCCceeec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
....+.+|++|.|.+. .++.+|
T Consensus 168 ----eig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 168 ----EIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ----HHHHHHHHHHHhcccc-eeeecC
Confidence 1123556777777775 466666
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.00087 Score=53.40 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=47.2
Q ss_pred cccccceEEEecCcchhhhcCC-CcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPS-SSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
.+++++.|.+.+|..+.+...+ ...-+++|+.|+|++|+++++-.. .....+++|+.|.+.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 3677888888888877664322 123578899999999988877533 345677888888888876554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0008 Score=58.81 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|+.|+|+.++++.|-+. .|..+++|-+|-+++-.+++++ +...+++|..|+.|.
T Consensus 90 l~~LRrLdLS~N~Is~I~p~------AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPD------AFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRLL 146 (498)
T ss_pred hhhhceecccccchhhcChH------hhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHHh
Confidence 44555555555555554221 1114555555555554555555 334456666665444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.00022 Score=62.42 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
++++..|++++- +++++.++ +..+.+|++|++++. .+..++++ .+++ .|+.|.+.+-
T Consensus 251 L~~l~vLDLRdN-klke~Pde----~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDE----ICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGN 307 (565)
T ss_pred cccceeeecccc-ccccCchH----HHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCC
Confidence 666666666665 45554332 345677777777763 35555444 4444 5666666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.0022 Score=51.17 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
+++++.|.+.+|..+.....+. .....++|+.|+|++|+.+++..-.....|+||+.|.+.+.+.....
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLER--LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred cchhhhheeccccchhhHHHHH--hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 8889999999999888765432 23468999999999999998866555677899999999988765543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.0029 Score=55.38 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=37.8
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.-.+++|+.++++. +|.+.|+.+++|+.|++++. .++.+.| ..+.++.+|..|
T Consensus 68 ~tveirLdqN~I~~------iP~~aF~~l~~LRrLdLS~N-~Is~I~p-~AF~GL~~l~~L 120 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS------IPPGAFKTLHRLRRLDLSKN-NISFIAP-DAFKGLASLLSL 120 (498)
T ss_pred cceEEEeccCCccc------CChhhccchhhhceeccccc-chhhcCh-HhhhhhHhhhHH
Confidence 34567888888887 45666668999999999874 5666544 446777777655
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.0062 Score=58.71 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE---------------
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE--------------- 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~--------------- 66 (270)
.|++||.|+|+++.+.. +|+..+.+++.|+.|+++|. +++.++ ..+.+++.|++|.
T Consensus 381 ~~~hLKVLhLsyNrL~~------fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNS------FPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQL 451 (1081)
T ss_pred cccceeeeeeccccccc------CCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcCCceeechhhhhc
Confidence 57888889988887765 55543337777888888884 676664 3366777777665
Q ss_pred --eeeEEeccCCCcceecCCccccCCCcccEEEeccCCC
Q 038160 67 --LTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDK 103 (270)
Q Consensus 67 --L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~ 103 (270)
|+.+|++ |-+|+...... ....|+|++|++++...
T Consensus 452 ~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcc
Confidence 3333432 12222221111 11237899999988875
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.036 Score=32.98 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.5
Q ss_pred hhccCCcEEEEecC
Q 038160 221 KTLVRLVKVQVYGC 234 (270)
Q Consensus 221 ~~l~~L~~L~i~~c 234 (270)
..+++|+.|+++++
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 34444444444444
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.072 Score=45.35 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=36.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEecc
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQG 74 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~ 74 (270)
..+++|++.++.+.+ |.. +.+ +...+|.|++|.++ |..+... ++.++ +..-+|+++.|.+
T Consensus 71 ~~v~elDL~~N~iSd-Wse--I~~-ile~lP~l~~LNls-~N~L~s~-----I~~lp-~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD-WSE--IGA-ILEQLPALTTLNLS-CNSLSSD-----IKSLP-LPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhcccchhcc-HHH--HHH-HHhcCccceEeecc-CCcCCCc-----cccCc-ccccceEEEEEcC
Confidence 457788888888877 554 322 22278999999986 4455422 56665 4444455556544
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.099 Score=49.85 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=56.1
Q ss_pred ccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCc
Q 038160 6 LEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGM 85 (270)
Q Consensus 6 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~ 85 (270)
++.|+|.++++... +|..+. .+++|+.|+++++ .+.+..|.. ++.+++|+.|+ |++. ++.+..+..
T Consensus 420 v~~L~L~~n~L~g~-----ip~~i~-~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~Ld-----Ls~N-~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGF-----IPNDIS-KLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLD-----LSYN-SFNGSIPES 485 (623)
T ss_pred EEEEECCCCCcccc-----CCHHHh-CCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEE-----CCCC-CCCCCCchH
Confidence 66788887777532 555555 8899999999987 454433432 67888888774 5444 333222221
Q ss_pred cccCCCcccEEEeccCCCceeec
Q 038160 86 HTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 86 ~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
...+++|+.|+++++.--..+|
T Consensus 486 -l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 486 -LGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred -HhcCCCCCEEECcCCcccccCC
Confidence 2467889999998885333444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.11 Score=41.80 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=6.5
Q ss_pred CCcccEEEeccC
Q 038160 90 WPALEILSVHRC 101 (270)
Q Consensus 90 ~~~L~~L~i~~c 101 (270)
+|+|+.|++++-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 555555555443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.066 Score=47.86 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=6.5
Q ss_pred CCcccEEEeccC
Q 038160 90 WPALEILSVHRC 101 (270)
Q Consensus 90 ~~~L~~L~i~~c 101 (270)
.+.|+.|++++.
T Consensus 185 ~~~L~~L~ls~N 196 (394)
T COG4886 185 LSNLNNLDLSGN 196 (394)
T ss_pred hhhhhheeccCC
Confidence 445555555554
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.11 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=9.7
Q ss_pred CcccEEEeccCCCceeec
Q 038160 91 PALEILSVHRCDKLKIFT 108 (270)
Q Consensus 91 ~~L~~L~i~~c~~l~~~~ 108 (270)
++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888886 66553
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.085 Score=27.36 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=11.5
Q ss_pred CcCCcEEEeeCCcCCccc
Q 038160 197 FRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 197 ~~~L~~L~i~~c~~l~~l 214 (270)
+++|++|++++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356666777777666654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.16 Score=42.24 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=28.7
Q ss_pred ccccceEEEecCc--chhhhcCCCcccCcCCcEEEeeCCcCCccc-CChhHHhhccCCcEEEEecCC
Q 038160 172 FQYLEILGVYHSQ--SLLILLPSSSVSFRNLAKLVAFGCKELIHL-VTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 172 l~~L~~L~l~~c~--~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.|+|+++++++.. .+..+.| ...+.||.+|++.+|+-...- .-..++.-+++|+.|+-..+.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 4666666666532 1122211 233555666666666433210 112244555666666655553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.048 Score=46.40 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=37.2
Q ss_pred ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 170 PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 170 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
..+|++..+.+..|+-=+.-.......||.+.-|.+. -.++-++........+++|..|.+++-|-...+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~-~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG-ANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhc-ccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3477777777777642111111123334444444443 233444433344566788888888888744444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.33 Score=46.32 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=36.9
Q ss_pred ccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 36 LTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 36 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
++.|++.++ .+....+.. ++.+++|+.| +|++. ++++..+. ....+++|+.|+++++.--..+|
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L-----~Ls~N-~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSI-----NLSGN-SIRGNIPP-SLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEE-----ECCCC-cccCcCCh-HHhCCCCCCEEECCCCCCCCCCc
Confidence 677888775 455443433 6778887777 44443 23322221 12467888888888884322344
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.15 Score=45.60 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=13.4
Q ss_pred CccEEEEecCcCccccCCchhhccccccceeE
Q 038160 35 SLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+|+.|++++- .++.++.. ++.++.|+.|+
T Consensus 141 nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~ 169 (394)
T COG4886 141 NLKELDLSDN-KIESLPSP--LRNLPNLKNLD 169 (394)
T ss_pred hccccccccc-chhhhhhh--hhccccccccc
Confidence 5666655542 33333211 44555555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.015 Score=53.30 Aligned_cols=65 Identities=34% Similarity=0.425 Sum_probs=33.7
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTE 109 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~ 109 (270)
-|..|+.+.++.. .++.++.. ++++..|.+++|..-.++.+|. . ..+--|+.|.+++. +++.+|+
T Consensus 96 ~f~~Le~liLy~n-~~r~ip~~--i~~L~~lt~l~ls~NqlS~lp~------~---lC~lpLkvli~sNN-kl~~lp~ 160 (722)
T KOG0532|consen 96 AFVSLESLILYHN-CIRTIPEA--ICNLEALTFLDLSSNQLSHLPD------G---LCDLPLKVLIVSNN-KLTSLPE 160 (722)
T ss_pred HHHHHHHHHHHhc-cceecchh--hhhhhHHHHhhhccchhhcCCh------h---hhcCcceeEEEecC-ccccCCc
Confidence 5556666666542 23444333 5677777666544333333321 1 12223676766665 5776664
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.0085 Score=51.64 Aligned_cols=87 Identities=17% Similarity=0.073 Sum_probs=48.3
Q ss_pred CCCCCEEEecCcccccccccccc----cccccccccceEEEecCcchhh-----hcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDS----KLGPIFQYLEILGVYHSQSLLI-----LLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~----~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
++.|+.|++.+-. ++ ..+. ...+.+++|++|++++|- ++. +.......+|+|+.|.+.++.--.+-
T Consensus 212 ~~~LevLdl~DNt-ft---~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 212 CPHLEVLDLRDNT-FT---LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred CCcceeeecccch-hh---hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 7778888777641 11 1000 112346788888888884 211 11112234788888888877543332
Q ss_pred CC--hhHHhhccCCcEEEEecCC
Q 038160 215 VT--SSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 215 ~~--~~~~~~l~~L~~L~i~~c~ 235 (270)
.. ...+...|.|++|.+.+|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 11 1112336888888888885
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.081 Score=45.15 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=13.8
Q ss_pred ccCcccCcCCCccEEEEecCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCD 45 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~ 45 (270)
+|.... -|.+|+++.++.|.
T Consensus 206 l~f~l~-~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 206 LSFNLN-AFRNLKTLKFSALS 225 (490)
T ss_pred cccchH-Hhhhhheeeeeccc
Confidence 344433 67889998888883
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=87.18 E-value=0.37 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.024 Sum_probs=5.6
Q ss_pred ccEEEEecCcCcc
Q 038160 36 LTRLVVWYCDKLK 48 (270)
Q Consensus 36 L~~L~l~~c~~l~ 48 (270)
|++|++++| .++
T Consensus 2 L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGN-NLT 13 (22)
T ss_dssp ESEEEETSS-EES
T ss_pred ccEEECCCC-cCE
Confidence 444555544 344
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.017 Score=48.62 Aligned_cols=104 Identities=19% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+.++|+..+| +|..+.. ...|+.|+.|.++- +++..+. ....|.+|++|++.. +.+.++--.....++
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-----c~kMp~lEVLsLSv-NkIssL~--pl~rCtrLkElYLRk-N~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-----CEKMPLLEVLSLSV-NKISSLA--PLQRCTRLKELYLRK-NCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-----HHhcccceeEEeec-cccccch--hHHHHHHHHHHHHHh-cccccHHHHHHHhcC
Confidence 557788888888 4554422 33588888888875 2343332 235677888887774 234444333456788
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccc---eeecCccCeeec
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKE---EIVFCKLKTLQL 263 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~---~~~~~~L~~L~l 263 (270)
|+|+.|.+.+.+=-.+. +.... .-.+|+|++|+-
T Consensus 88 psLr~LWL~ENPCc~~a------g~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEA------GQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred chhhhHhhccCCccccc------chhHHHHHHHHcccchhccC
Confidence 88888888775422222 11100 126888888764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.099 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=24.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYC 44 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c 44 (270)
.|.++.|+++++++..+-. .. .+++|+.|++++.
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-------La-~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-------LA-ELPQLQLLDLSGN 339 (490)
T ss_pred ccceeEEeccccceeeehh-------hh-hcccceEeecccc
Confidence 5778888888887776422 11 6788888888774
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.92 E-value=0.13 Score=49.05 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=16.5
Q ss_pred cCcccCcCCCccEEEEecCc
Q 038160 26 PAAVFPHFQSLTRLVVWYCD 45 (270)
Q Consensus 26 p~~~~~~l~~L~~L~l~~c~ 45 (270)
|..++ .|..|++|.+++|.
T Consensus 102 pi~if-pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCD 120 (1096)
T ss_pred Cceec-cccceeeEEecCcc
Confidence 66777 89999999999994
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.09 E-value=0.9 Score=41.04 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=31.8
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.+.+|+.|++.+++++++-.. . +++++|++|++++- .++.+.+ +..++.|+.|+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~------l-~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL------L-SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELN 146 (414)
T ss_pred cccceeeeeccccchhhcccc------h-hhhhcchheecccc-ccccccc---hhhccchhhhe
Confidence 456777777777777765320 1 16788888887763 4444433 34455555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 270 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-06
Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 53/212 (25%)
Query: 66 ELTTLRLQGLPKLR-----CLYPGMHTS--EWPALEILS---VHRCDKLKIFTEDLSQNN 115
LR Q L +LR + G+ S W AL++ V KIF +L N
Sbjct: 136 PYLKLR-QALLELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 116 ENDQLGIPAQQPPLPLEKEGC-LEKHLGKLAM-IKELKLYRPYHLKQLCKQDSKLGPIFQ 173
+ + Q+ ++ H + + I ++ L++L K
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKP------- 242
Query: 174 YLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233
+ LL+L +V CK I L+T+ K + +
Sbjct: 243 --------YENCLLVL---LNVQNAKAWNAFNLSCK--I-LLTTRF-KQVTDFLSAATT- 286
Query: 234 CRAMTEVVIND-KDGVEKEEIVFCKLKTLQLF 264
T + ++ + +E L
Sbjct: 287 ----THISLDHHSMTLTPDE-------VKSLL 307
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQL 62
L +L L+IS ++ ++ +L ++ I + L +L
Sbjct: 111 LTSLTLLDIS---------HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161
Query: 63 QHLEL-----TTLR-LQGLPKLRCLY 82
+ L + R ++ PKL LY
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLY 187
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 270 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.5 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.48 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.45 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.43 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.43 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.42 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.42 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.42 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.42 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.41 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.41 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.41 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.4 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.4 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.39 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.39 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.37 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.37 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.37 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.37 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.36 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.36 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.34 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.34 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.34 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.33 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.33 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.32 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.31 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.29 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.29 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.29 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.28 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.28 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.27 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.27 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.25 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.25 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.24 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.24 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.24 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.24 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.23 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.22 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.21 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.21 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.21 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.21 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.2 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.2 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.2 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.18 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.18 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.17 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.16 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.16 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.14 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.13 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.12 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.11 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.11 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.1 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.1 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.1 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.09 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.06 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.05 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.05 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.04 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.04 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.03 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.03 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.02 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.02 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.01 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.0 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.0 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.96 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.96 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.94 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.91 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.91 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.88 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.87 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.84 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.82 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.79 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.72 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.65 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.63 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.61 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.59 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.59 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.58 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.58 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.58 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.57 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.54 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.52 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.52 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.51 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.49 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.49 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.47 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.45 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.42 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.41 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.29 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.28 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.21 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.19 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.1 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.08 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.98 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.97 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.94 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.85 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.84 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 97.81 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.72 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.66 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.62 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.47 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.39 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.28 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.17 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.11 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.1 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.8 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.44 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 95.06 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 94.11 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 92.94 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 92.92 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 90.32 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 83.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 81.51 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=127.50 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=129.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
++++++|++++++++. +|..++ .+++|++|+++++ .+..++. .++.+++|++|+ ++++ .++.++
T Consensus 80 ~~~l~~L~L~~n~l~~------lp~~l~-~l~~L~~L~L~~n-~l~~lp~--~~~~l~~L~~L~-----Ls~n-~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ------FPDQAF-RLSHLQHMTIDAA-GLMELPD--TMQQFAGLETLT-----LARN-PLRALP 143 (328)
T ss_dssp STTCCEEEEESSCCSS------CCSCGG-GGTTCSEEEEESS-CCCCCCS--CGGGGTTCSEEE-----EESC-CCCCCC
T ss_pred ccceeEEEccCCCchh------cChhhh-hCCCCCEEECCCC-CccchhH--HHhccCCCCEEE-----CCCC-ccccCc
Confidence 5789999999988875 566666 7999999999987 4555533 368888888874 4444 333332
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc-----------cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEE
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL-----------SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELK 151 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~ 151 (270)
. ....+++|++|++++|..+..+|... .+.++.++...-.+. . +......+++|+.|+
T Consensus 144 ~--~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------~---lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 144 A--SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------S---LPASIANLQNLKSLK 212 (328)
T ss_dssp G--GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------C---CCGGGGGCTTCCEEE
T ss_pred H--HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------c---chHhhcCCCCCCEEE
Confidence 2 23467889999999988777666422 111111111000000 0 001122377888888
Q ss_pred ecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEE
Q 038160 152 LYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQV 231 (270)
Q Consensus 152 i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 231 (270)
++++ ++..+.. ....+++|++|++++|.....++ .....+++|++|++++|..+..+. ..+..+++|+.|++
T Consensus 213 L~~N-~l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 213 IRNS-PLSALGP----AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDL 284 (328)
T ss_dssp EESS-CCCCCCG----GGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEEC
T ss_pred ccCC-CCCcCch----hhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeC
Confidence 8887 3433221 23457888888888887666553 336678888888888887766543 23577888888888
Q ss_pred ecCCCcceE
Q 038160 232 YGCRAMTEV 240 (270)
Q Consensus 232 ~~c~~l~~~ 240 (270)
++|+.+..+
T Consensus 285 ~~n~~~~~i 293 (328)
T 4fcg_A 285 RGCVNLSRL 293 (328)
T ss_dssp TTCTTCCCC
T ss_pred CCCCchhhc
Confidence 888766655
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=110.21 Aligned_cols=204 Identities=16% Similarity=0.145 Sum_probs=141.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+.. ..+..+++|++|+++++..++.+.+ ..++++++|++| +++++.+++.+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~------~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L-----~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS------HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHI-----EIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEESCCCSEECT------TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEE-----EEEEETTCCEECT
T ss_pred CcccEEEEeCCcceEECH------HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEE-----ECCCCCCeeEcCH
Confidence 478999999988887532 2223789999999999866777644 336778887776 6776667777665
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC---EEEecCcccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK---ELKLYRPYHLKQ 160 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~---~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.+|. + ..+++|+ .|+++++++++.
T Consensus 99 ~~-f~~l~~L~~L~l~~n~-l~~lp~-----~--------------------------~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 99 DA-LKELPLLKFLGIFNTG-LKMFPD-----L--------------------------TKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp TS-EECCTTCCEEEEEEEC-CCSCCC-----C--------------------------TTCCBCCSEEEEEEESCTTCCE
T ss_pred HH-hCCCCCCCEEeCCCCC-Cccccc-----c--------------------------ccccccccccEEECCCCcchhh
Confidence 33 2357899999999884 544441 1 1145555 999999877776
Q ss_pred cccccccccccccccc-eEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc-cCCcEEEEecCCCcc
Q 038160 161 LCKQDSKLGPIFQYLE-ILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL-VRLVKVQVYGCRAMT 238 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~ 238 (270)
+... ....+++|+ +|+++++. ++.++.. ....++|++|+++++..++.+.. ..+..+ ++|+.|+++++. +.
T Consensus 146 i~~~---~~~~l~~L~~~L~l~~n~-l~~i~~~-~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 146 IPVN---AFQGLCNETLTLKLYNNG-FTSVQGY-AFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp ECTT---TTTTTBSSEEEEECCSCC-CCEECTT-TTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC-CC
T ss_pred cCcc---cccchhcceeEEEcCCCC-CcccCHh-hcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc-cc
Confidence 5431 234588999 99998864 5555444 33348999999999877876643 345677 899999999973 55
Q ss_pred eEeeccCCCCccceeecCccCeeecCCCCCC
Q 038160 239 EVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 269 (270)
.+.. ..+++|+.|++.++..|
T Consensus 219 ~l~~----------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 219 ALPS----------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCC----------TTCTTCSEEECTTC---
T ss_pred cCCh----------hHhccCceeeccCccCC
Confidence 4421 15899999999998764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=115.52 Aligned_cols=104 Identities=19% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|+++++ .+..+.. .....+++|++|+++++. ++.++.. ...+++|++|+++++ +++.+ +.....+
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~~l 317 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMY---HPFVKMQRLERLYISNNR-LVALNLY-GQPIPTLKVLDLSHN-HLLHV--ERNQPQF 317 (390)
T ss_dssp CTTCSEEECCSS-CCCEEES---GGGTTCSSCCEEECCSSC-CCEEECS-SSCCTTCCEEECCSS-CCCCC--GGGHHHH
T ss_pred CCCccEEECCCC-cCCCcCh---hHccccccCCEEECCCCc-CcccCcc-cCCCCCCCEEECCCC-cceec--Ccccccc
Confidence 777888888877 3333221 123457889999998864 4554333 466889999999987 45543 2335678
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++++ +.++. ...+++|+.|++.+.|
T Consensus 318 ~~L~~L~L~~N~-i~~~~----------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 318 DRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSC
T ss_pred CcCCEEECCCCc-cceeC----------chhhccCCEEEcCCCC
Confidence 899999999885 44331 1247888888887754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-13 Score=113.59 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=136.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++. +|..+. .+++|++|+++++ .++.++. .++++++|++| +++++..+..+
T Consensus 102 ~l~~L~~L~L~~n~l~~------lp~~~~-~l~~L~~L~Ls~n-~l~~lp~--~l~~l~~L~~L-----~L~~n~~~~~~ 166 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLME------LPDTMQ-QFAGLETLTLARN-PLRALPA--SIASLNRLREL-----SIRACPELTEL 166 (328)
T ss_dssp GGTTCSEEEEESSCCCC------CCSCGG-GGTTCSEEEEESC-CCCCCCG--GGGGCTTCCEE-----EEEEETTCCCC
T ss_pred hCCCCCEEECCCCCccc------hhHHHh-ccCCCCEEECCCC-ccccCcH--HHhcCcCCCEE-----ECCCCCCcccc
Confidence 47899999999988874 555555 8999999999997 4665533 37888888877 56666555544
Q ss_pred cCCcc-------ccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEe
Q 038160 82 YPGMH-------TSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKL 152 (270)
Q Consensus 82 ~~~~~-------~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i 152 (270)
+.... ...+++|++|+++++ +++.+|... .+.++.++..--.+.. +......+++|+.|++
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~---------l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA---------LGPAIHHLPKLEELDL 236 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC---------CCGGGGGCTTCCEEEC
T ss_pred ChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc---------CchhhccCCCCCEEEC
Confidence 43221 123788999999888 465565321 2223322221000000 0001223889999999
Q ss_pred cCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEe
Q 038160 153 YRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVY 232 (270)
Q Consensus 153 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 232 (270)
++|.....+.. ....+++|++|++++|.....++.. ...+++|++|++++|+.+..+ +.....+++|+.+.+.
T Consensus 237 s~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~i--P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 237 RGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRL--PSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCC--CGGGGGSCTTCEEECC
T ss_pred cCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhc--cHHHhhccCceEEeCC
Confidence 99976554322 2345899999999999877766444 788999999999999987765 3456888999988877
Q ss_pred cC
Q 038160 233 GC 234 (270)
Q Consensus 233 ~c 234 (270)
..
T Consensus 310 ~~ 311 (328)
T 4fcg_A 310 PH 311 (328)
T ss_dssp GG
T ss_pred HH
Confidence 54
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=115.20 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=119.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|++++++.+.. ..+ ..+++|++|+++++ .+..+ +...++++++|++|+ +++. +++.+.
T Consensus 63 ~~~l~~L~L~~n~i~~~~~-----~~~-~~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~-----L~~n-~l~~~~ 128 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKV-----NSF-KHLRHLEILQLSRN-HIRTI-EIGAFNGLANLNTLE-----LFDN-RLTTIP 128 (440)
T ss_dssp CTTCSEEECCSCCCCEECT-----TTT-SSCSSCCEEECCSS-CCCEE-CGGGGTTCSSCCEEE-----CCSS-CCSSCC
T ss_pred CCCCcEEEccCCcCCeeCH-----HHh-hCCCCCCEEECCCC-cCCcc-ChhhccCCccCCEEE-----CCCC-cCCeeC
Confidence 3568888888887876432 222 27888888888886 45555 333467778877774 4443 333333
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
... ...+++|++|+++++. ++.++... .++++.++..- ..+..+ ..+....+++|+.|+++++ ++
T Consensus 129 ~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 129 NGA-FVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYI--------SEGAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp TTT-SCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCSSCCEEECTTS-CC
T ss_pred HhH-hhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCccee--------CcchhhcccccCeecCCCC-cC
Confidence 221 2346677777777663 44443211 11111111100 000000 0011222667777777776 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
+.+. ....+++|++|+++++ .++.+.+.....+++|++|++.++ +++.+. ...+..+++|+.|+++++. +.
T Consensus 198 ~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~ 268 (440)
T 3zyj_A 198 REIP-----NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINLAHNN-LT 268 (440)
T ss_dssp SSCC-----CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEECTTSC-CC
T ss_pred cccc-----ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEECCCCC-CC
Confidence 4331 1234677777777776 344554444566777777777765 344442 2334567777777777773 44
Q ss_pred eEeeccCCCCccceeecCccCeeecCCCC
Q 038160 239 EVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+.. .....+++|+.|++.+-|
T Consensus 269 ~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 269 LLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCT-------TTTSSCTTCCEEECCSSC
T ss_pred ccCh-------hHhccccCCCEEEcCCCC
Confidence 3311 011135777777776543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=114.94 Aligned_cols=223 Identities=17% Similarity=0.096 Sum_probs=116.9
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
+++++|+|++++++.+.. ..+. .+++|++|+++++ .+..+.+ ..++++++|++|+ |++. +++.+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~-----~~~~-~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~-----L~~n-~l~~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-----DTFR-HLHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLE-----LFDN-WLTVIPS 140 (452)
T ss_dssp TTCSEEECCSSCCCEECT-----TTTT-TCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEE-----CCSS-CCSBCCT
T ss_pred CCccEEECcCCcCceECH-----HHcC-CCCCCCEEECCCC-ccCCcCh-hhccCcccCCEEE-----CCCC-cCCccCh
Confidence 578888888888876422 2232 7888888888886 5665533 3467778877774 4443 2333332
Q ss_pred CccccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
.. ...+++|++|+++++. ++.++... .+.++.++..- ..+..+ ..+....+++|+.|+++++ ++.
T Consensus 141 ~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n-~l~ 209 (452)
T 3zyi_A 141 GA-FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYI--------SEGAFEGLFNLKYLNLGMC-NIK 209 (452)
T ss_dssp TT-SSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCTTCCEEECTTS-CCS
T ss_pred hh-hcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcccc--------ChhhccCCCCCCEEECCCC-ccc
Confidence 21 2246667777776663 44443211 11111111100 000000 0011122667777777766 333
Q ss_pred ccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcce
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTE 239 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 239 (270)
.+. ....+++|++|+++++. ++.+.+.....+++|++|++.++. +..+. ...+..+++|+.|+++++ ++..
T Consensus 210 ~~~-----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 210 DMP-----NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE-RNAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp SCC-----CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSS-CCSC
T ss_pred ccc-----cccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceEC-HHHhcCCCCCCEEECCCC-cCCc
Confidence 321 12346677777777654 333434435566777777777653 44332 233456777777777777 3443
Q ss_pred EeeccCCCCccceeecCccCeeecCCCC
Q 038160 240 VVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+.. .....+++|+.|++.+.|
T Consensus 281 ~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCT-------TSSTTCTTCCEEECCSSC
T ss_pred cCh-------HHhccccCCCEEEccCCC
Confidence 311 011136777777776643
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=118.04 Aligned_cols=230 Identities=18% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|+++.+..+ |...+..+++|++|++++| .+..+ +...++++++|++|+ ++++ .++.+
T Consensus 97 ~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~-----Ls~N-~l~~~ 162 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLS-----MSNN-NLERI 162 (597)
T ss_dssp TCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEE-----CCSS-CCCBC
T ss_pred CCCCCCEEECCCCcCCCC------CHHHHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEE-----eeCC-cCCCC
Confidence 467889999988777763 2222227888999988887 56655 334457788887775 3333 22222
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCC---------CCCC------------------CCCCCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGI---------PAQQ------------------PPLPLEKE 134 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~---------~~~~------------------~l~~~~~~ 134 (270)
.+.. ...+++|++|+++++. ++.++....+.+..+.... ..++ .+..+.--
T Consensus 163 ~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 163 EDDT-FQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp CTTT-TTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred Chhh-hhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 2211 1234455555555442 2222211111221111100 0000 00000000
Q ss_pred cc-cccC--cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCC
Q 038160 135 GC-LEKH--LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKEL 211 (270)
Q Consensus 135 ~c-~e~~--~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l 211 (270)
.+ +.+. ...+++|+.|+++++. +..+.. .....+++|++|+++++. +..++.. ...+++|++|++++|. +
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~Ls~N~-l 313 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMY---HPFVKMQRLERLYISNNR-LVALNLY-GQPIPTLKVLDLSHNH-L 313 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSC-CCEEES---GGGTTCSSCCEEECTTSC-CCEEECS-SSCCTTCCEEECCSSC-C
T ss_pred CCCCCCChhhccCCCCCEEECCCCc-cCCCCH---HHhcCccCCCEEECCCCC-CCCCCcc-cccCCCCcEEECCCCC-C
Confidence 00 0111 1237788888888763 333221 123457889999998864 5555433 5668899999999874 4
Q ss_pred cccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 212 IHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 212 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+ +.....+++|+.|++++|. +..+. ...+++|+.|++.+.|
T Consensus 314 ~~i--~~~~~~l~~L~~L~L~~N~-l~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHV--ERNQPQFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCC--GGGHHHHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSC
T ss_pred Ccc--CcccccCCCCCEEECCCCC-CCCcC----------hhhcCCCCEEEeeCCC
Confidence 433 3345778899999999985 33331 2257888888887764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-12 Score=108.77 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=56.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|++++|. +..+. ....+++|++|++++|. ++.+ + ....+++|++|++++| +++++ +.+..+
T Consensus 220 ~~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~l~~n-~l~~~---~~~~~l 286 (347)
T 4fmz_A 220 MTRLNSLKIGNNK-ITDLS-----PLANLSQLTWLEIGTNQ-ISDI-N-AVKDLTKLKMLNVGSN-QISDI---SVLNNL 286 (347)
T ss_dssp CTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSC-CCCC-G-GGTTCTTCCEEECCSS-CCCCC---GGGGGC
T ss_pred CCcCCEEEccCCc-cCCCc-----chhcCCCCCEEECCCCc-cCCC-h-hHhcCCCcCEEEccCC-ccCCC---hhhcCC
Confidence 4556666665552 22211 12346677777777653 3332 1 2445677777777766 34443 235667
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|. +.+.. ......+++|++|++.+++
T Consensus 287 ~~L~~L~L~~n~-l~~~~-------~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNED-------MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSSC-CCGGG-------HHHHHTCTTCSEEECCSSS
T ss_pred CCCCEEECcCCc-CCCcC-------hhHhhccccCCEEEccCCc
Confidence 777777777774 22211 0111247888888888775
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-12 Score=112.92 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++++|++++++++.+.. ..+. .+++|++|+++++ .+..+.+ ..++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~ 86 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-----DEFA-SFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLG 86 (477)
T ss_dssp TTCSEEECCSSCCCEECT-----TTTT-TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECH-----hHcc-CCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEE
Confidence 456667776666665321 1122 5666666666665 3444422 2245566666655
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-14 Score=121.56 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++++.|++.++.+...+. ..+ .+++|++|++++|. +........++.+++|++| +++++. ++...+
T Consensus 70 ~~l~~L~l~~n~l~~~~~------~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L-----~L~~~~-l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA------EHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL-----SLEGLR-LSDPIV 135 (336)
T ss_dssp TTCSEEECTTCEECSCCC------SCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE-----ECTTCB-CCHHHH
T ss_pred ccceEEEcCCccccccch------hhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE-----eCcCcc-cCHHHH
Confidence 567777777766654322 233 67888888888874 4332122335677777666 455552 322111
Q ss_pred CccccCCCcccEEEeccCCCce
Q 038160 84 GMHTSEWPALEILSVHRCDKLK 105 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~ 105 (270)
. ....+++|++|++++|..++
T Consensus 136 ~-~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 136 N-TLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp H-HHTTCTTCSEEECTTCBSCC
T ss_pred H-HHhcCCCCCEEECCCCCCCC
Confidence 1 11246777777777775554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=114.35 Aligned_cols=202 Identities=20% Similarity=0.168 Sum_probs=131.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|++++++.+.. ..+. .+++|++|+++++ .++.+ +...++++++|++| ++++. .++.+
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L-----~L~~N-~l~~~ 162 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEV-----GAFN-GLASLNTLELFDN-WLTVI-PSGAFEYLSKLREL-----WLRNN-PIESI 162 (452)
T ss_dssp TCTTCCEEECCSSCCCEECT-----TTTT-TCTTCCEEECCSS-CCSBC-CTTTSSSCTTCCEE-----ECCSC-CCCEE
T ss_pred CCCCCCEEECCCCccCCcCh-----hhcc-CcccCCEEECCCC-cCCcc-ChhhhcccCCCCEE-----ECCCC-Cccee
Confidence 57899999999998887522 2233 7999999999987 46665 44446788888877 45554 24444
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
.... ...+++|++|++++|..++.++... .+.++.++...-.+..+ + ....+++|+.|+++++ ++
T Consensus 163 ~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~----~~~~l~~L~~L~Ls~N-~l 230 (452)
T 3zyi_A 163 PSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------P----NLTPLVGLEELEMSGN-HF 230 (452)
T ss_dssp CTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------C----CCTTCTTCCEEECTTS-CC
T ss_pred CHhH-HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------c----cccccccccEEECcCC-cC
Confidence 4322 3467889999998888888776432 22333222211111100 0 0123788999999988 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+++|+.|++++++
T Consensus 231 ~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRP---GSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECG---GGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEEECCSSC
T ss_pred cccCc---ccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccC-hHHhccccCCCEEEccCCC
Confidence 43322 223457899999999864 55554555677899999999987 565543 3445678899999998854
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-12 Score=106.94 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+.. ..+ ..+++|++|+++++ .++.+.+ ..++++++|++| ++++.+.++.+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-----~~~-~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~l~~n~~l~~~~ 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-----ASF-RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQL-----DLSDNAQLRSVD 97 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-----TTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEE-----ECCSCTTCCCCC
T ss_pred CCCceEEEeeCCcCCccCH-----HHc-ccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEE-----eCCCCCCccccC
Confidence 3567777777766665321 112 26777777777765 4554422 235566666555 566665555543
Q ss_pred CCccccCCCcccEEEeccCC
Q 038160 83 PGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~ 102 (270)
... ...+++|++|+++++.
T Consensus 98 ~~~-~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 98 PAT-FHGLGRLHTLHLDRCG 116 (285)
T ss_dssp TTT-TTTCTTCCEEECTTSC
T ss_pred HHH-hcCCcCCCEEECCCCc
Confidence 322 2356777777777764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=114.25 Aligned_cols=202 Identities=19% Similarity=0.173 Sum_probs=130.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|++++++.+.. +.+..+++|++|+++++ .++.+ +...++.+++|++|+ +++. .++.+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~------~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~-----L~~N-~i~~~ 151 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEI------GAFNGLANLNTLELFDN-RLTTI-PNGAFVYLSKLKELW-----LRNN-PIESI 151 (440)
T ss_dssp SCSSCCEEECCSSCCCEECG------GGGTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSCCEEE-----CCSC-CCCEE
T ss_pred CCCCCCEEECCCCcCCccCh------hhccCCccCCEEECCCC-cCCee-CHhHhhccccCceee-----CCCC-ccccc
Confidence 57899999999988887532 22237999999999987 57665 334467888888774 4443 24444
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
... ....+++|++|++++|..+..++... .++++.++..--.+..+ | . ...+++|+.|+++++ ++
T Consensus 152 ~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~---~-~~~l~~L~~L~Ls~N-~l 219 (440)
T 3zyj_A 152 PSY-AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------P---N-LTPLIKLDELDLSGN-HL 219 (440)
T ss_dssp CTT-TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------C---C-CTTCSSCCEEECTTS-CC
T ss_pred CHH-HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------c---c-cCCCcccCEEECCCC-cc
Confidence 332 22457888888888887777666432 22222222211011000 0 0 123788999999988 45
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+++|+.|++++.+
T Consensus 220 ~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRP---GSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECT---TTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred CccCh---hhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC-hhHhccccCCCEEEcCCCC
Confidence 54432 224458899999999864 55555555677899999999986 565543 3445678899999998854
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-12 Score=116.12 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=39.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.++. +|.++. .+++|++|+++++ .++.+.+ ..++.+++|++| +++++.-...+.
T Consensus 277 l~~L~~L~l~~n~l~~------lp~~l~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~l~~n~~~~~~~ 342 (606)
T 3t6q_A 277 FSGLQELDLTATHLSE------LPSGLV-GLSTLKKLVLSAN-KFENLCQ-ISASNFPSLTHL-----SIKGNTKRLELG 342 (606)
T ss_dssp CTTCSEEECTTSCCSC------CCSSCC-SCTTCCEEECTTC-CCSBGGG-GCGGGCTTCSEE-----ECCSCSSCCBCC
T ss_pred ccCCCEEeccCCccCC------CChhhc-ccccCCEEECccC-CcCcCch-hhhhccCcCCEE-----ECCCCCcccccc
Confidence 4555555555555543 333333 5566666666554 2333322 224455555554 344432211111
Q ss_pred CCccccCCCcccEEEeccCC
Q 038160 83 PGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~ 102 (270)
.. ....+++|++|+++++.
T Consensus 343 ~~-~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 343 TG-CLENLENLRELDLSHDD 361 (606)
T ss_dssp SS-TTTTCTTCCEEECCSSC
T ss_pred hh-hhhccCcCCEEECCCCc
Confidence 11 12346667777766663
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=109.14 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeE-------Eecc
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTL-------RLQG 74 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L-------~L~~ 74 (270)
.+++|++|+++++.++.+ |. +. .+++|++|++++|. +..+.+ ++.+++|++|++..- .+.+
T Consensus 86 ~l~~L~~L~L~~n~i~~~------~~-~~-~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~ 153 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI------SA-LQ-NLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSN 153 (347)
T ss_dssp TCTTCCEEECCSSCCCCC------GG-GT-TCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTT
T ss_pred cCCcCCEEEccCCcccCc------hH-Hc-CCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhh
Confidence 467788888877766653 21 22 67777777777653 444322 456666666541100 0111
Q ss_pred CCCcceecCCc-------cccCCCcccEEEeccCCCceeeccc-ccccccCCCCCCCCC---------CCCCCCccccc-
Q 038160 75 LPKLRCLYPGM-------HTSEWPALEILSVHRCDKLKIFTED-LSQNNENDQLGIPAQ---------QPPLPLEKEGC- 136 (270)
Q Consensus 75 ~~~L~~~~~~~-------~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~~~~c- 136 (270)
+++|+.+.... ....+++|++|++++|. ++.++.. ..+.++.+......+ ..+..++-..|
T Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 22222222111 02346777777777773 3333311 112222221110000 01111000001
Q ss_pred cccC--cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 137 LEKH--LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 137 ~e~~--~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
+.+. ...+++|+.|+++++ ++..+ .....+++|++|++++|. ++.+ +. ...+++|++|++++|. +...
T Consensus 233 l~~~~~~~~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~L~~n~-l~~~ 302 (347)
T 4fmz_A 233 ITDLSPLANLSQLTWLEIGTN-QISDI-----NAVKDLTKLKMLNVGSNQ-ISDI-SV-LNNLSQLNSLFLNNNQ-LGNE 302 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSSC-CCCC-GG-GGGCTTCSEEECCSSC-CCGG
T ss_pred cCCCcchhcCCCCCEEECCCC-ccCCC-----hhHhcCCCcCEEEccCCc-cCCC-hh-hcCCCCCCEEECcCCc-CCCc
Confidence 1111 234889999999998 44443 123468999999999984 4443 22 5678999999999985 4443
Q ss_pred CChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 215 VTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 215 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
....+..+++|+.|++++|+ +.++. +...+++|++|++.+++
T Consensus 303 -~~~~l~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 -DMEVIGGLTNLTTLFLSQNH-ITDIR---------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -GHHHHHTCTTCSEEECCSSS-CCCCG---------GGGGCTTCSEESSSCC-
T ss_pred -ChhHhhccccCCEEEccCCc-ccccc---------Chhhhhccceeehhhhc
Confidence 23456789999999999996 54442 12258999999999875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-12 Score=113.32 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=66.7
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|+++++. +..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+.. ..+..
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 369 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDD---NAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSFLG 369 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTTTT
T ss_pred cCCCCCEEECCCCc-ccccCh---hHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccCh-hhccc
Confidence 36777777777763 332211 123346788888888764 44444444566788888888876 3444432 34466
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+++|+.|+++++. +.++.. .....+++|++|++.+.|
T Consensus 370 l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 370 LPNLKELALDTNQ-LKSVPD-------GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cccccEEECCCCc-cccCCH-------hHhccCCcccEEEccCCC
Confidence 7888888888873 444321 011246788888887653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=110.88 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+.. ..+ ..+++|++|+++++ .++.+.+ ..++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~-----~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~ 106 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISN-----SDL-QRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLD 106 (353)
T ss_dssp CTTCCEEECTTSCCCEECT-----TTT-TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcCcccCH-----HHh-ccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEE
Confidence 3578888888877776422 122 27888888888876 5665533 3366777777775
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=108.64 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEK 250 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 250 (270)
.+++|++|+++++. ++...+.....+++|++|+++++ +++.+. .....+++|+.|++++|. +.++. .
T Consensus 246 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~--------~ 312 (390)
T 3o6n_A 246 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE--------R 312 (390)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG--------G
T ss_pred CCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC--------c
Confidence 46677777777653 33333443556677777777765 344432 123456777777777773 44331 1
Q ss_pred ceeecCccCeeecCCCC
Q 038160 251 EEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 251 ~~~~~~~L~~L~l~~~~ 267 (270)
....+++|++|++.+++
T Consensus 313 ~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GHHHHTTCSEEECCSSC
T ss_pred cccccCcCCEEECCCCc
Confidence 12246788888877653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=109.93 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=114.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeee-----E---Eec
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTT-----L---RLQ 73 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~-----L---~L~ 73 (270)
.+++|++|+|++++++. +|...+..+++|++|+++++ .+..+.+ ..++.+++|++|++.. + .+.
T Consensus 78 ~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 149 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKL------IPLGVFTGLSNLTKLDISEN-KIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFS 149 (477)
T ss_dssp TCTTCCEEECCSSCCCS------CCTTSSTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSST
T ss_pred CCccCCEEECCCCcCCc------cCcccccCCCCCCEEECCCC-ccccCCh-hHccccccCCEEECCCCccceeChhhcc
Confidence 46788999998877775 33333336788888888876 3444422 3356777777776211 1 122
Q ss_pred cCCCcceecCCc---------cccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccC
Q 038160 74 GLPKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKH 140 (270)
Q Consensus 74 ~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~ 140 (270)
++++|+.+.... ....+++|+.|+++++. ++.++... .+.++.++..- ..... +...
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~ 219 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDT---------MTPN 219 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCE---------ECTT
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccc---------cCcc
Confidence 233333322211 01245666666666653 33332111 01111111000 00000 0000
Q ss_pred cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHH
Q 038160 141 LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 141 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.....+|++|+++++ +++.+.. .....+++|++|+++++. ++.+.+.....+++|++|++.++ ++..+. +..+
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~ 292 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAVPY---LAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVE-PYAF 292 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSCCH---HHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEEC-TTTB
T ss_pred cccCccccEEECcCC-cccccCH---HHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceEC-HHHh
Confidence 001335666666665 3333211 112346677777777654 44444444556677777777765 344432 2234
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+++|+.|+++++. +..+.. .....+++|+.|++.+.|
T Consensus 293 ~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQ-LTTLEE-------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSC-CSCCCG-------GGBSCGGGCCEEECCSSC
T ss_pred cCcccCCEEECCCCc-CceeCH-------hHcCCCcccCEEEccCCC
Confidence 566777777777773 443310 111245677777776543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-12 Score=113.25 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE-----eeeEEeccCC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE-----LTTLRLQGLP 76 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~-----L~~L~L~~~~ 76 (270)
.+++|++|++++++++.+ |.+ .+++|++|+++++. ++.+ + ++++++|++|+ ++.+.+.+++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~------~~~---~l~~L~~L~Ls~N~-l~~~-~---~~~l~~L~~L~L~~N~l~~l~~~~l~ 127 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL------DLS---QNTNLTYLACDSNK-LTNL-D---VTPLTKLTYLNCDTNKLTKLDVSQNP 127 (457)
T ss_dssp GCTTCSEEECCSSCCSCC------CCT---TCTTCSEEECCSSC-CSCC-C---CTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred ccCCCCEEEccCCcCCeE------ccc---cCCCCCEEECcCCC-Ccee-e---cCCCCcCCEEECCCCcCCeecCCCCC
Confidence 467888888888777653 322 67778888887763 5544 2 56677777776 2233344444
Q ss_pred CcceecCCc------cccCCCcccEEEeccCCCceee
Q 038160 77 KLRCLYPGM------HTSEWPALEILSVHRCDKLKIF 107 (270)
Q Consensus 77 ~L~~~~~~~------~~~~~~~L~~L~i~~c~~l~~~ 107 (270)
+|+.+.... ....+++|++|++++|..+..+
T Consensus 128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC
T ss_pred cCCEEECCCCccceeccccCCcCCEEECCCCCccccc
Confidence 554443322 1224566777777666544443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=104.90 Aligned_cols=226 Identities=19% Similarity=0.152 Sum_probs=125.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCC-chhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFS-ASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.++|++|++++++++. +|.+++..+++|++|+++++ .++.... +..+..+++|++|+ +++. .++.+
T Consensus 27 ~~~l~~L~L~~n~l~~------i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~-----Ls~n-~i~~l 93 (306)
T 2z66_A 27 PSSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD-----LSFN-GVITM 93 (306)
T ss_dssp CTTCCEEECCSSCCCC------CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE-----CCSC-SEEEE
T ss_pred CCCCCEEECCCCccCc------cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE-----CCCC-ccccC
Confidence 3578999998887775 34443337899999999886 3443210 12245677777775 3333 12222
Q ss_pred cCCccccCCCcccEEEeccCCCceeecc-cc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTE-DL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYH 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~ 157 (270)
... ...+++|++|+++++. ++.++. .. .+.++.++...-.+... ..+....+++|+.|+++++.
T Consensus 94 ~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~- 161 (306)
T 2z66_A 94 SSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNS- 161 (306)
T ss_dssp EEE--EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEEC--------STTTTTTCTTCCEEECTTCE-
T ss_pred hhh--cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCcc--------chhhcccCcCCCEEECCCCc-
Confidence 211 2346667777766652 333321 00 11111111100000000 00112237888999988874
Q ss_pred ccc-cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCC
Q 038160 158 LKQ-LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRA 236 (270)
Q Consensus 158 l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 236 (270)
+.. .. ......+++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.. ..+..+++|+.|+++++.
T Consensus 162 l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~- 234 (306)
T 2z66_A 162 FQENFL---PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQVLDYSLNH- 234 (306)
T ss_dssp EGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCS-GGGTTCTTCCEEECTTSC-
T ss_pred cccccc---hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccCh-hhccCcccCCEeECCCCC-
Confidence 222 11 1223457889999999874 555545556678899999998764 444432 235678899999999984
Q ss_pred cceEeeccCCCCccceeec-CccCeeecCCCC
Q 038160 237 MTEVVINDKDGVEKEEIVF-CKLKTLQLFDLD 267 (270)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 267 (270)
+..... .....+ ++|++|++.+.+
T Consensus 235 l~~~~~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKK-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred CcccCH-------HHHHhhhccCCEEEccCCC
Confidence 333211 111134 488888887754
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=107.67 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=126.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|++++++.+ |.+.+..+++|++|+++++.-++.+ +...+.++++++++ ...+..+++.+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i------~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~-----l~~~~N~l~~l~ 96 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVI------QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEI-----RIEKANNLLYIN 96 (350)
T ss_dssp CTTCSEEEEESCCCSEE------CTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEE-----EEEEETTCCEEC
T ss_pred CCCCCEEEccCCcCCCc------CHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhh-----hcccCCcccccC
Confidence 35799999999988874 4444347899999999998655444 44446677776654 234455677665
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc-cc--cccCCCC-CCCCCCCCCCCccccccccCcCC-CCCCCEEEecCccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL-SQ--NNENDQL-GIPAQQPPLPLEKEGCLEKHLGK-LAMIKELKLYRPYH 157 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~--~~~~~~~-~~~~~~~l~~~~~~~c~e~~~~~-~~~L~~L~i~~c~~ 157 (270)
++. ...+++|++|+++++. ++.++... .. ....+.. +...+..+. .+.... ...++.|++++. +
T Consensus 97 ~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--------~~~f~~~~~~l~~L~L~~N-~ 165 (350)
T 4ay9_X 97 PEA-FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------RNSFVGLSFESVILWLNKN-G 165 (350)
T ss_dssp TTS-BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEEC--------TTSSTTSBSSCEEEECCSS-C
T ss_pred chh-hhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccc--------ccchhhcchhhhhhccccc-c
Confidence 543 2457889999998874 44444211 00 0000000 000000000 000011 234666776665 3
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCc
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAM 237 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 237 (270)
++.+... .....+|+++.+.++..++.+++..+..+++|++|+++++ +++.+.. ..+.+|+.|.+.++.++
T Consensus 166 i~~i~~~----~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 166 IQEIHNS----AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNL 236 (350)
T ss_dssp CCEECTT----SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTC
T ss_pred ccCCChh----hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCc
Confidence 4443221 1234567778777777777776554566778888888765 4655432 23556777777777777
Q ss_pred ceEeeccCCCCccceeecCccCeeecC
Q 038160 238 TEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
+++..- ..+++|+.+++.
T Consensus 237 ~~lP~l---------~~l~~L~~l~l~ 254 (350)
T 4ay9_X 237 KKLPTL---------EKLVALMEASLT 254 (350)
T ss_dssp CCCCCT---------TTCCSCCEEECS
T ss_pred CcCCCc---------hhCcChhhCcCC
Confidence 666321 136677777664
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=101.49 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=126.1
Q ss_pred CCCCccEEEEeccc-cceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcce
Q 038160 2 ALPNLEALEISAIN-VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRC 80 (270)
Q Consensus 2 ~~~~L~~L~l~~~~-l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~ 80 (270)
.+++|++|++++++ ++.+. ...+..+++|++|++.+|..++.++ ...++++++|++|++..-.+...+.
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~------~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp~--- 122 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLE------SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPD--- 122 (239)
T ss_dssp TCTTCCEEEEECCSSCCEEC------TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCCC---
T ss_pred CCCCCcEEeCCCCCCcceeC------HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCccccc---
Confidence 47899999999975 87743 2222379999999999987888774 3346789999988765554444432
Q ss_pred ecCCccccCCCccc---EEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC-EEEecCcc
Q 038160 81 LYPGMHTSEWPALE---ILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK-ELKLYRPY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~L~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~-~L~i~~c~ 156 (270)
...+++|+ .|++++++.++.++... ...+++|+ .|+++++
T Consensus 123 ------~~~l~~L~~L~~L~l~~N~~l~~i~~~~-----------------------------~~~l~~L~~~L~l~~n- 166 (239)
T 2xwt_C 123 ------LTKVYSTDIFFILEITDNPYMTSIPVNA-----------------------------FQGLCNETLTLKLYNN- 166 (239)
T ss_dssp ------CTTCCBCCSEEEEEEESCTTCCEECTTT-----------------------------TTTTBSSEEEEECCSC-
T ss_pred ------cccccccccccEEECCCCcchhhcCccc-----------------------------ccchhcceeEEEcCCC-
Confidence 13455666 99999997787776210 12277899 9999887
Q ss_pred cccccccccccccccccccceEEEecCcchhhhcCCCcccC-cCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 157 HLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF-RNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 157 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+++.+... ... .++|++|+++++..++.+++.....+ ++|++|+++++ +++.+.. ..+++|+.|++.++.
T Consensus 167 ~l~~i~~~---~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGY---AFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTT---TTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC-
T ss_pred CCcccCHh---hcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCcc
Confidence 45543221 112 37899999999876777766656677 99999999984 5655432 257889999998876
Q ss_pred C
Q 038160 236 A 236 (270)
Q Consensus 236 ~ 236 (270)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=109.31 Aligned_cols=85 Identities=18% Similarity=0.052 Sum_probs=48.5
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEK 250 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 250 (270)
.+++|++|+++++. ++.+.+.....+++|++|+++++ ++..+ .+..+..+++|+.|+++++. +..+.. .
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~ 365 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNH-IRALGD-------Q 365 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSSC-CCEECT-------T
T ss_pred cCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCCc-ccccCh-------h
Confidence 35666677666653 33333433556677777777765 33333 22344667777777777773 443321 1
Q ss_pred ceeecCccCeeecCCC
Q 038160 251 EEIVFCKLKTLQLFDL 266 (270)
Q Consensus 251 ~~~~~~~L~~L~l~~~ 266 (270)
....+++|++|++.+.
T Consensus 366 ~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 366 SFLGLPNLKELALDTN 381 (455)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hccccccccEEECCCC
Confidence 1124678888887764
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-12 Score=116.26 Aligned_cols=224 Identities=17% Similarity=0.051 Sum_probs=127.0
Q ss_pred CCCCccEEEEecc-ccceecccccccCcccCcCCCccEEEEecCcCccccC-CchhhccccccceeEeeeEEeccCCCcc
Q 038160 2 ALPNLEALEISAI-NVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIF-SASMIGNLKQLQHLELTTLRLQGLPKLR 79 (270)
Q Consensus 2 ~~~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~L~~L~L~~~~~L~ 79 (270)
.+++|++|+++++ ....+ +.. .+++|++|+++++ .++... .+..++.+++|++| +++++. ++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~------~~~---~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L-----~L~~n~-l~ 389 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF------KKV---ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL-----DLSFNG-AI 389 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC------CCC---CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE-----ECCSCS-EE
T ss_pred CCCccceeeccCCcCccch------hhc---cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe-----ECCCCc-cc
Confidence 4688999999885 44332 222 7899999999887 344432 13336778887777 444443 33
Q ss_pred eecCCccccCCCcccEEEeccCCCceeecc-cc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCc
Q 038160 80 CLYPGMHTSEWPALEILSVHRCDKLKIFTE-DL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRP 155 (270)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c 155 (270)
.++ .....+++|++|++++|. +...+. .. .+.++.++...-.+... ..+....+++|+.|+++++
T Consensus 390 ~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 390 IMS--ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKID--------FDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEC--CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTC
T ss_pred cch--hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCcc--------chhhhcCCCCCCEEECCCC
Confidence 333 122356677777777763 222211 00 11111111100000000 0011223778888888888
Q ss_pred ccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 156 YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 156 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.--..+. ......+++|++|++++|. ++...+.....+++|++|++++| ++.... +..+..+++|+.|++++|.
T Consensus 459 ~l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 459 SFKDNTL---SNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLD-SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EEGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEE-GGGTTTCTTCCEEECTTSC
T ss_pred cCCCcch---HHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCC-cCCCcC-HHHccCCCcCCEEECCCCc
Confidence 4222111 1223457889999998874 44554555667888999999887 444442 3445678889999998885
Q ss_pred CcceEeeccCCCCccceeecC-ccCeeecCCCC
Q 038160 236 AMTEVVINDKDGVEKEEIVFC-KLKTLQLFDLD 267 (270)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 267 (270)
+..+.. ....++ +|++|++.+.|
T Consensus 533 -l~~~p~--------~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 533 -IETSKG--------ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -CCCEES--------CGGGSCTTCCEEECCSCC
T ss_pred -CcccCH--------hHhhhcccCcEEEccCCC
Confidence 555531 112355 58888887754
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=111.88 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=52.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.+..+.. ..+. .+++|++|+++++. +..++ +..++++++|++| +++++ .++.++
T Consensus 74 l~~L~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~l~ 139 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDT-----YAFA-YAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVL-----VLERN-DLSSLP 139 (597)
T ss_dssp CCCCSEEECTTSCCCEECT-----TTTT-TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCcEEECCCCCCCCCCh-----HHhc-CCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEE-----EeeCC-CCCCCC
Confidence 4666666666666655321 1222 66777777777653 55543 2335666666665 45554 344443
Q ss_pred CCccccCCCcccEEEeccCCCceeec
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
... ...+++|++|++++|. ++.++
T Consensus 140 ~~~-~~~l~~L~~L~Ls~N~-l~~~~ 163 (597)
T 3oja_B 140 RGI-FHNTPKLTTLSMSNNN-LERIE 163 (597)
T ss_dssp TTT-TTTCTTCCEEECCSSC-CCBCC
T ss_pred HHH-hccCCCCCEEEeeCCc-CCCCC
Confidence 321 2468899999999984 55444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.9e-12 Score=106.84 Aligned_cols=216 Identities=16% Similarity=0.099 Sum_probs=117.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .+....+ ++.+++|++|+ ++++ +++.+.
T Consensus 33 ~~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~-----Ls~n-~l~~l~ 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQIS-----AADLA-PFTKLELLNLSSN-VLYETLD---LESLSTLRTLD-----LNNN-YVQELL 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCC-----HHHHT-TCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEE-----CCSS-EEEEEE
T ss_pred CCCCCEEECcCCccCcCC-----HHHhh-CCCcCCEEECCCC-cCCcchh---hhhcCCCCEEE-----CcCC-cccccc
Confidence 467888888887777642 12222 7888888888876 3444433 56777777775 3222 122221
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
..++|++|+++++. ++.++....+.++.++..--.+..+. ......+++|+.|+++++ ++..+.
T Consensus 97 ------~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~ 160 (317)
T 3o53_A 97 ------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------DLDEGCRSRVQYLDLKLN-EIDTVN 160 (317)
T ss_dssp ------ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGG--------GBCTGGGSSEEEEECTTS-CCCEEE
T ss_pred ------CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCcc--------chhhhccCCCCEEECCCC-CCCccc
Confidence 12455555555552 33332211112222111000000000 001122678888888887 344332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEee
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 242 (270)
.. .....+++|++|+++++. ++.+.. ...+++|++|+++++ +++.+.. .+..+++|+.|+++++ .+.++..
T Consensus 161 ~~--~~~~~l~~L~~L~L~~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 161 FA--ELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GG--GGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECT
T ss_pred HH--HHhhccCcCCEEECCCCc-Cccccc--ccccccCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhh
Confidence 11 112346888888888865 444422 234788899988876 4555432 2567888999999888 4555521
Q ss_pred ccCCCCccceeecCccCeeecCCCC
Q 038160 243 NDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 243 ~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
....+++|+.|++.+.+
T Consensus 232 --------~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 232 --------ALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp --------TCCCCTTCCEEECTTCC
T ss_pred --------HhhcCCCCCEEEccCCC
Confidence 12246788888887754
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-11 Score=102.72 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=109.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccC-----CC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGL-----PK 77 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~-----~~ 77 (270)
.++|++|++++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++.+++|++|++..-.+... ++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-----GDFK-NLKNLHTLILINN-KISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-----TTTT-TCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCCTT
T ss_pred CCCCeEEECCCCcCCEeCh-----hhhc-cCCCCCEEECCCC-cCCeeCH-HHhcCCCCCCEEECCCCcCCccChhhccc
Confidence 4678999999988876422 1232 7899999999887 4555533 3367888888886222111111 22
Q ss_pred cceecCCc---------cccCCCcccEEEeccCCCce--eeccc--ccccccCCCCCCCCCCCCCCCccccccccCcCCC
Q 038160 78 LRCLYPGM---------HTSEWPALEILSVHRCDKLK--IFTED--LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKL 144 (270)
Q Consensus 78 L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~ 144 (270)
|+.+.... ....+++|+.|+++++.--. ..+.. ..+.++.++..--.+..+ | ....
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l------~-----~~~~ 191 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI------P-----QGLP 191 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC------C-----SSCC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC------C-----cccc
Confidence 22222211 11346777777777764211 11100 011222221110000000 0 0114
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++. +..+.. .....+++|++|+++++. ++...+.....+++|++|+++++ ++..+ +..+..++
T Consensus 192 ~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~ 263 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDA---ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKV--PGGLADHK 263 (330)
T ss_dssp TTCSEEECTTSC-CCEECT---GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSC--CTTTTTCS
T ss_pred ccCCEEECCCCc-CCccCH---HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccC--ChhhccCC
Confidence 677777777763 333211 123346777888877754 44444433556777888888776 34433 22345677
Q ss_pred CCcEEEEecCCCcceE
Q 038160 225 RLVKVQVYGCRAMTEV 240 (270)
Q Consensus 225 ~L~~L~i~~c~~l~~~ 240 (270)
+|+.|+++++. +.++
T Consensus 264 ~L~~L~l~~N~-i~~~ 278 (330)
T 1xku_A 264 YIQVVYLHNNN-ISAI 278 (330)
T ss_dssp SCCEEECCSSC-CCCC
T ss_pred CcCEEECCCCc-CCcc
Confidence 78888877773 4433
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-11 Score=110.02 Aligned_cols=231 Identities=16% Similarity=0.086 Sum_probs=138.3
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEee------eEEeccC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELT------TLRLQGL 75 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~------~L~L~~~ 75 (270)
.+++|++|++.++.+.. +| .+. .+++|++|++++|.- +.++ . + .+++|++|++. ...+.++
T Consensus 283 ~l~~L~~L~l~~~~~~~------l~-~l~-~~~~L~~L~l~~n~l-~~lp-~--~-~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKY------LE-DVP-KHFKWQSLSIIRCQL-KQFP-T--L-DLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp GGTTCSEEEEESCCCCC------CC-CCC-TTCCCSEEEEESCCC-SSCC-C--C-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred cCCCCCEEEecCccchh------hh-hcc-ccccCCEEEcccccC-cccc-c--C-CCCccceeeccCCcCccchhhccC
Confidence 36788999998877765 33 222 788888888888854 5553 2 3 67777776522 1122233
Q ss_pred CCcceecCCc-----------cccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcC
Q 038160 76 PKLRCLYPGM-----------HTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLG 142 (270)
Q Consensus 76 ~~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~ 142 (270)
++|+.+.... ....+++|++|++++|. ++.++... .+.++.++..--.+..... .....
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~ 421 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTE-------FSAFL 421 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTT-------TTTTT
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccC-------hhhhh
Confidence 4444433321 12356788888888875 55554211 1222222211000000000 01122
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|+++++. +..... .....+++|++|++++|.-.....+.....+++|++|++++| +++... +..+..
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 495 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFD---GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDT 495 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT
T ss_pred ccccCCEEECcCCC-CCccch---hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhcc
Confidence 38899999999985 332221 223458999999999986554444655778999999999988 455543 344578
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+++|+.|++++|. +.++.. .....+++|++|++.++.
T Consensus 496 l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 496 LHRLQLLNMSHNN-LLFLDS-------SHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTCCEEECCSSC-CSCEEG-------GGTTTCTTCCEEECTTSC
T ss_pred cccCCEEECCCCc-CCCcCH-------HHccCCCcCCEEECCCCc
Confidence 8999999999994 554421 111247889999988764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=117.56 Aligned_cols=109 Identities=17% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++. +..... .....+++|++|++++|.-... .|.....+++|++|++++|. +... .+..++.+
T Consensus 441 l~~L~~L~L~~n~-l~~~~p---~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~-l~~~-~p~~~~~l 513 (768)
T 3rgz_A 441 LSKLRDLKLWLNM-LEGEIP---QELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNR-LTGE-IPKWIGRL 513 (768)
T ss_dssp CTTCCEEECCSSC-CCSCCC---GGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSC-CCSC-CCGGGGGC
T ss_pred CCCCCEEECCCCc-ccCcCC---HHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCc-cCCc-CChHHhcC
Confidence 5666777766663 221111 1233467788888877653322 34445667788888888765 3322 23345677
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|.-...+ +.....+++|+.|++.+++
T Consensus 514 ~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNI--------PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCSSCCEEEC--------CGGGGGCTTCCEEECCSSE
T ss_pred CCCCEEECCCCcccCcC--------CHHHcCCCCCCEEECCCCc
Confidence 88888888888522222 1122257888888887763
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-11 Score=111.61 Aligned_cols=237 Identities=19% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEe-----eeEE-----
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL-----TTLR----- 71 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L-----~~L~----- 71 (270)
.+++|++|+++++.++.+. |..+. .+++|++|+++++.....+ +...++.+++|++|++ ....
T Consensus 299 ~l~~L~~L~l~~n~l~~~~-----~~~~~-~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLC-----QISAS-NFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp SCTTCCEEECTTCCCSBGG-----GGCGG-GCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred ccccCCEEECccCCcCcCc-----hhhhh-ccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCccccccCcchh
Confidence 4688999999998777532 23333 7888999998887543333 4444677888887762 2222
Q ss_pred eccCCCcceecCCc---------cccCCCcccEEEeccCCCceee-cccc---cccccCCCCCCCCCCCCCCCccccccc
Q 038160 72 LQGLPKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIF-TEDL---SQNNENDQLGIPAQQPPLPLEKEGCLE 138 (270)
Q Consensus 72 L~~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e 138 (270)
+.++++|+.+.... ....+++|++|+++++. ++.. +... .+.++.++...-.+... ..
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~ 442 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDIS--------SE 442 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTT--------CT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCc--------CH
Confidence 33445554443321 12346788888888874 3322 1110 11222222110000000 00
Q ss_pred cCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 139 KHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 139 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
.....+++|++|+++++. +.............+++|++|++++|. ++.+.+.....+++|++|+++++ ++.... +.
T Consensus 443 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~ 518 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSS-IE 518 (606)
T ss_dssp TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGG-GG
T ss_pred HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC-ccCcCC-hh
Confidence 112237888888888884 222100001223457888888888874 45554555677888888888877 344432 33
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+..+++| .|+++++. +..+. +.....+++|+.|++.+.|
T Consensus 519 ~l~~l~~L-~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNH-ISIIL-------PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GGTTCCSC-EEECCSSC-CCCCC-------GGGHHHHHTSSEEECTTCC
T ss_pred HhCccccc-EEECcCCc-ccccC-------HhhcccCCCCCEEeCCCCC
Confidence 45677778 88888884 33321 1112257888898888765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-13 Score=123.53 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCCCCEEEecCccc-ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 144 LAMIKELKLYRPYH-LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 144 ~~~L~~L~i~~c~~-l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
+++|+.|+++.|.+ +..... ......+++|++|++++|.--..-.+.....+++|++|++++|+ +.+......+..
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGL--SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHH--HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHH--HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 66677777766554 111100 01122356777777776642211111223456777777777776 544433444566
Q ss_pred ccCCcEEEEecCC
Q 038160 223 LVRLVKVQVYGCR 235 (270)
Q Consensus 223 l~~L~~L~i~~c~ 235 (270)
+++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 7777777777775
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-13 Score=114.69 Aligned_cols=188 Identities=16% Similarity=0.112 Sum_probs=115.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.+...+ +|..+. .+++|++|++++|. +....+ ..++.+++|++| +++++..++..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~----~~~~~~-~~~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L-----~L~~~~~l~~~ 158 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVST----LHGILS-QCSKLQNLSLEGLR-LSDPIV-NTLAKNSNLVRL-----NLSGCSGFSEF 158 (336)
T ss_dssp CCBCCCEEECTTCEECHHH----HHHHHT-TBCCCSEEECTTCB-CCHHHH-HHHTTCTTCSEE-----ECTTCBSCCHH
T ss_pred cCCCCCEEEccCCCcCHHH----HHHHHh-hCCCCCEEeCcCcc-cCHHHH-HHHhcCCCCCEE-----ECCCCCCCCHH
Confidence 4789999999997665421 222233 79999999999984 543322 235678887776 78888766642
Q ss_pred cCCccccCCCcccEEEeccCCCcee--ecccccccccCCCCCCCCCCCCCCCccccccccCcCCCC-CCCEEEecCcc-c
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKI--FTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA-MIKELKLYRPY-H 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~-~L~~L~i~~c~-~ 157 (270)
........+++|++|++++|++++. ++.. ...++ +|++|++++|. +
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------------------------------~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------------------------------VAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------------------------------HHHSCTTCCEEECCSCGGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHH------------------------------HHhcccCCCEEEeCCCccc
Confidence 2212234588999999999976653 1210 11266 77777777775 3
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+..... ......+++|++|++++|..+++..+.....+++|++|++++|..+.+... .....+++|+.|++++|
T Consensus 209 ~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 209 LQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 321000 011234677777777777654433333355667777777777765443221 12355777777777777
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-11 Score=98.60 Aligned_cols=183 Identities=20% Similarity=0.185 Sum_probs=127.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+. |..+. .+++|++|+++++..++.+.+ ..++.+++|++| +++++. ++.+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~-----~~~~~-~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L-----~l~~n~-l~~~ 120 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARID-----AAAFT-GLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTL-----HLDRCG-LQEL 120 (285)
T ss_dssp TCTTCCEEECCSSCCCEEC-----TTTTT-TCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEE-----ECTTSC-CCCC
T ss_pred cCCCCCEEECCCCccceeC-----HhhcC-CccCCCEEeCCCCCCccccCH-HHhcCCcCCCEE-----ECCCCc-CCEE
Confidence 4789999999998888752 33333 799999999999876776633 346788888877 555542 3333
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
... ....+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+
T Consensus 121 ~~~-~~~~l~~L~~L~l~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~l~~n-~l~~~ 168 (285)
T 1ozn_A 121 GPG-LFRGLAALQYLYLQDNA-LQALPDD-----------------------------TFRDLGNLTHLFLHGN-RISSV 168 (285)
T ss_dssp CTT-TTTTCTTCCEEECCSSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCEE
T ss_pred CHh-HhhCCcCCCEEECCCCc-ccccCHh-----------------------------HhccCCCccEEECCCC-ccccc
Confidence 222 12458899999999984 4433310 0122788999999987 45443
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.. .....+++|++|+++++. +....+.....+++|++|+++++ +++.+ ....+..+++|+.|++++++
T Consensus 169 ~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 PE---RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CT---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEECCSSC
T ss_pred CH---HHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCcccCEEeccCCC
Confidence 22 123457899999999875 55554555677899999999987 45543 33456788999999999875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=109.59 Aligned_cols=216 Identities=16% Similarity=0.110 Sum_probs=123.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+|+++++..+. |..+. .+++|++|++++|. +...++ ++.+++|++|+ ++++ .++.+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~-----Ls~N-~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQIS-----AADLA-PFTKLELLNLSSNV-LYETLD---LESLSTLRTLD-----LNNN-YVQELL 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCC-----GGGGT-TCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEE-----CCSS-EEEEEE
T ss_pred CCCccEEEeeCCcCCCCC-----HHHHh-CCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEE-----ecCC-cCCCCC
Confidence 468999999998887642 22333 78999999998874 555433 67888888775 3333 223222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. .++|+.|++++|. ++.++....+.++.+...--.+..+. ......+++|+.|+++++ ++..+.
T Consensus 97 ~------~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~ 160 (487)
T 3oja_A 97 V------GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------DLDEGCRSRVQYLDLKLN-EIDTVN 160 (487)
T ss_dssp E------CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGG--------GBCGGGGSSEEEEECTTS-CCCEEE
T ss_pred C------CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCC--------chhhcCCCCCCEEECCCC-CCCCcC
Confidence 1 2556666666653 33332211122222111000000000 001122778888888887 344322
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEee
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 242 (270)
.. .....+++|++|+++++. ++.+++ ...+++|++|+++++ ++..+.. .+..+++|+.|+++++. +..+.
T Consensus 161 ~~--~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~--~~~~l~~L~~L~Ls~N~-l~~lp- 230 (487)
T 3oja_A 161 FA--ELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNNK-LVLIE- 230 (487)
T ss_dssp GG--GGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTSC-CCEEC-
T ss_pred hH--HHhhhCCcccEEecCCCc-cccccc--cccCCCCCEEECCCC-CCCCCCH--hHcCCCCccEEEecCCc-Ccccc-
Confidence 21 122357889999998875 444432 235889999999876 4555432 25678889999999874 55442
Q ss_pred ccCCCCccceeecCccCeeecCCCC
Q 038160 243 NDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 243 ~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|++.+.+
T Consensus 231 -------~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 231 -------KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -------TTCCCCTTCCEEECTTCC
T ss_pred -------hhhccCCCCCEEEcCCCC
Confidence 112246788888887764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=102.47 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=130.1
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE--------eccC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR--------LQGL 75 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~--------L~~~ 75 (270)
.++++|+++++++...+. +|..+. .+++|++|+++++..+....+.. ++++++|++|+|..-. +.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~---~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP---IPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEE---CCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcc---cChhHh-CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 467777777766653111 344444 67777777777644555443332 5677777777633221 2234
Q ss_pred CCcceecCCc---------cccCCCcccEEEeccCCCceeecccc--cc-cccCCCCCCCCCCCCCCCccccccccCcCC
Q 038160 76 PKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIFTEDL--SQ-NNENDQLGIPAQQPPLPLEKEGCLEKHLGK 143 (270)
Q Consensus 76 ~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~ 143 (270)
++|+.+.... ....+++|++|+++++.--..+|... .. .++.++...-.+.. . .......
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-----~---~~~~~~~ 196 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----K---IPPTFAN 196 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----E---CCGGGGG
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-----c---CChHHhC
Confidence 4444433221 12357889999999885322444321 11 22222211000000 0 0001112
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
++ |+.|+++++. +..... .....+++|++|+++++.-. ...+. ...+++|++|+++++. +... .+..+..+
T Consensus 197 l~-L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l 267 (313)
T 1ogq_A 197 LN-LAFVDLSRNM-LEGDAS---VLFGSDKNTQKIHLAKNSLA-FDLGK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQL 267 (313)
T ss_dssp CC-CSEEECCSSE-EEECCG---GGCCTTSCCSEEECCSSEEC-CBGGG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGC
T ss_pred Cc-ccEEECcCCc-ccCcCC---HHHhcCCCCCEEECCCCcee-eecCc-ccccCCCCEEECcCCc-ccCc-CChHHhcC
Confidence 44 8888888873 332221 22345889999999987643 32233 4568999999999875 4433 23456788
Q ss_pred cCCcEEEEecCCCcc-eEeeccCCCCccceeecCccCeeecCCCCC
Q 038160 224 VRLVKVQVYGCRAMT-EVVINDKDGVEKEEIVFCKLKTLQLFDLDS 268 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 268 (270)
++|+.|+++++. +. .+.. . ..+++|+.+++.+-|.
T Consensus 268 ~~L~~L~Ls~N~-l~~~ip~--------~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 268 KFLHSLNVSFNN-LCGEIPQ--------G-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTCCEEECCSSE-EEEECCC--------S-TTGGGSCGGGTCSSSE
T ss_pred cCCCEEECcCCc-ccccCCC--------C-ccccccChHHhcCCCC
Confidence 999999999995 33 2211 1 2578888888887653
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-11 Score=102.78 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=109.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++.+++++.+ | ++. .+++|++|++++| .+..+.+ ++.+++|++|+ ++++. ++.+.
T Consensus 40 l~~L~~L~l~~~~i~~l------~-~~~-~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~-----L~~n~-l~~~~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI------E-GVQ-YLNNLIGLELKDN-QITDLAP---LKNLTKITELE-----LSGNP-LKNVS 101 (308)
T ss_dssp HHTCCEEECTTSCCCCC------T-TGG-GCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEE-----CCSCC-CSCCG
T ss_pred cCCcCEEEeeCCCccCc------h-hhh-ccCCCCEEEccCC-cCCCChh---HccCCCCCEEE-----ccCCc-CCCch
Confidence 57889999988777653 2 232 7899999999887 5665533 67788887774 44442 33332
Q ss_pred CCccccCCCcccEEEeccCCCceeeccc-ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTED-LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
....+++|++|++++|. ++.++.. ..+.++.++..--.+..+ .. ...+++|+.|+++++ ++..+
T Consensus 102 ---~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~L~~L~l~~n-~l~~~ 166 (308)
T 1h6u_A 102 ---AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNI---------SP-LAGLTNLQYLSIGNA-QVSDL 166 (308)
T ss_dssp ---GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCC---------GG-GGGCTTCCEEECCSS-CCCCC
T ss_pred ---hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcC---------cc-ccCCCCccEEEccCC-cCCCC
Confidence 13457888888888874 4443310 012222221110000000 00 122677888888777 34332
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.. ...+++|++|+++++. ++.+.+ ...+++|++|+++++ ++.++. ....+++|+.|++++++
T Consensus 167 ~~-----l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N-~l~~~~---~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 167 TP-----LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNN-QISDVS---PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GG-----GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTS-CCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred hh-----hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCC-ccCccc---cccCCCCCCEEEccCCe
Confidence 11 3346788888888764 333322 456788888888876 344432 24677888888888874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=106.70 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=126.0
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE------eccCC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR------LQGLP 76 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~------L~~~~ 76 (270)
+++|++|+++++.+.. +|.... .+ +|++|++.+|. +..+ +. +.+++|+.|++..-. ...++
T Consensus 281 l~~L~~L~l~~~~l~~------l~~~~~-~~-~L~~L~l~~n~-~~~l-~~---~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 281 LTNVSSFSLVSVTIER------VKDFSY-NF-GWQHLELVNCK-FGQF-PT---LKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp GTTCSEEEEESCEECS------CCBCCS-CC-CCSEEEEESCB-CSSC-CB---CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred cCcccEEEecCccchh------hhhhhc-cC-CccEEeeccCc-cccc-Cc---ccccccCEEeCcCCccccccccccCC
Confidence 5788888888876664 333333 45 77777777763 3333 21 345555555411100 01233
Q ss_pred CcceecCCc-----------cccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCC
Q 038160 77 KLRCLYPGM-----------HTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGK 143 (270)
Q Consensus 77 ~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~ 143 (270)
+|+.+..+. ....+++|++|++++|. ++.++... .+.++.++..--.+..... ......
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~ 419 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLS 419 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTT-------SCTTTT
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccc-------hhhhhc
Confidence 333322211 12346788888888874 44333211 1222222221000000000 001223
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++|. +..... .....+++|++|++++|.-.....|.....+++|++|++++|. ++.... ..+..+
T Consensus 420 l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSL 493 (570)
T ss_dssp CTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTC
T ss_pred CCCCCEEeCcCCc-ccccch---hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcc
Confidence 7889999999884 332211 2234578999999999875433335556778999999999874 554432 345678
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|. +..+.. .....+++|+.|++.+.|
T Consensus 494 ~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPD-------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCc-CCCCCH-------HHhhcccCCcEEEecCCc
Confidence 899999999983 544421 111246888888888753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-10 Score=102.43 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|++++|. ++.+.+ ...+++|++|++++|. +..... ...+++|+.|++++|. +.++. .
T Consensus 286 l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~ 348 (466)
T 1o6v_A 286 LTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDVS---------S 348 (466)
T ss_dssp CTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCCG---------G
T ss_pred CCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCch---------h
Confidence 4455555555442 222211 2345555555555552 332211 3455566666666652 33220 1
Q ss_pred eeecCccCeeecCCC
Q 038160 252 EIVFCKLKTLQLFDL 266 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~ 266 (270)
...+++|+.|++.++
T Consensus 349 l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 349 LANLTNINWLSAGHN 363 (466)
T ss_dssp GTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCCC
Confidence 114677777777665
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=97.59 Aligned_cols=175 Identities=17% Similarity=0.075 Sum_probs=105.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++++++++.+++++. +|.+ ..+++++|+++++. +..+. +..++.+++|++| ++++. .++.+
T Consensus 8 ~l~~l~~l~~~~~~l~~------ip~~---~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~~ 70 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA------LPPD---LPKDTTILHLSENL-LYTFS-LATLMPYTRLTQL-----NLDRA-ELTKL 70 (290)
T ss_dssp CSTTCCEEECTTSCCSS------CCSC---CCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEE-----ECTTS-CCCEE
T ss_pred ccCCccEEECCCCCCCc------CCCC---CCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEE-----ECCCC-ccCcc
Confidence 47889999999888876 4554 45789999999874 55553 3346788888777 45553 35554
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
... ..+++|++|+++++ .++.+|.. ...+++|+.|+++++ +++.+
T Consensus 71 ~~~---~~l~~L~~L~Ls~N-~l~~l~~~------------------------------~~~l~~L~~L~l~~N-~l~~l 115 (290)
T 1p9a_G 71 QVD---GTLPVLGTLDLSHN-QLQSLPLL------------------------------GQTLPALTVLDVSFN-RLTSL 115 (290)
T ss_dssp ECC---SCCTTCCEEECCSS-CCSSCCCC------------------------------TTTCTTCCEEECCSS-CCCCC
T ss_pred cCC---CCCCcCCEEECCCC-cCCcCchh------------------------------hccCCCCCEEECCCC-cCccc
Confidence 442 46888999999887 45544421 112566666666665 33332
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.. .....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|+++++
T Consensus 116 ~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 116 PL---GALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CS---STTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CH---HHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC
Confidence 21 112345667777766643 44443333345666777776654 344332 233455666777777666
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=107.78 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.+++|++|++++++++.+ |.+ .+++|++|+++++ .++.+ + ++.+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l------~~~---~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L 153 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL------DVS---QNPLLTYLNCARN-TLTEI-D---VSHNTQLTEL 153 (457)
T ss_dssp TCTTCCEEECCSSCCSCC------CCT---TCTTCCEEECTTS-CCSCC-C---CTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee------cCC---CCCcCCEEECCCC-cccee-c---cccCCcCCEE
Confidence 578889999988877753 322 7788888888776 35443 2 4566666665
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=99.77 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=123.1
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+++++++++.+++. +|.. ..++|++|+++++ .++.+++ ..++++++|++|+ ++++ +++.+.+.
T Consensus 32 ~l~~l~~~~~~l~~------lp~~---~~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~-----L~~n-~l~~~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEK------VPKD---LPPDTALLDLQNN-KITEIKD-GDFKNLKNLHTLI-----LINN-KISKISPG 94 (330)
T ss_dssp ETTEEECTTSCCCS------CCCS---CCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEE-----CCSS-CCCCBCTT
T ss_pred CCeEEEecCCCccc------cCcc---CCCCCeEEECCCC-cCCEeCh-hhhccCCCCCEEE-----CCCC-cCCeeCHH
Confidence 67788887776765 4554 4578999999997 5776643 3378889988884 4443 23333222
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCC-----------CCCCCCCccccc-------cccCcCCCCC
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPA-----------QQPPLPLEKEGC-------LEKHLGKLAM 146 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~c-------~e~~~~~~~~ 146 (270)
. ...+++|++|+++++. ++.+|....+.++.++..--. +..+..++--.+ .......+++
T Consensus 95 ~-~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 A-FAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp T-TTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred H-hcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 1 2356777777777763 555554333334433321100 000000000000 0011122667
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|+++++ ++..+.. ...++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.. ..+..+++|
T Consensus 173 L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L 242 (330)
T 1xku_A 173 LSYIRIADT-NITTIPQ------GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHL 242 (330)
T ss_dssp CCEEECCSS-CCCSCCS------SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTC
T ss_pred cCEEECCCC-ccccCCc------cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCC
Confidence 777777766 2333211 123678888888764 444444445677888888888764 444432 345678889
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.|++++|. +.++.. ....+++|++|++.++
T Consensus 243 ~~L~L~~N~-l~~lp~--------~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 243 RELHLNNNK-LVKVPG--------GLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEECCSSC-CSSCCT--------TTTTCSSCCEEECCSS
T ss_pred CEEECCCCc-CccCCh--------hhccCCCcCEEECCCC
Confidence 999998883 443311 1113455666665543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=95.94 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ ++..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l 204 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPK---GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVP-EGAFDSL 204 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTC
T ss_pred CcCCCEEECCCC-cCCccCH---hHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCC-HHHhccc
Confidence 667777777766 3333221 112346677777777653 44444433445677777777765 444432 2334556
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++++++
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 777777776643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-11 Score=100.92 Aligned_cols=205 Identities=14% Similarity=0.042 Sum_probs=112.4
Q ss_pred CCccEEEEecCcCccc--cCCchhhccccccceeEeee---EE------eccCCCcceecCCc---------cccCCCcc
Q 038160 34 QSLTRLVVWYCDKLKY--IFSASMIGNLKQLQHLELTT---LR------LQGLPKLRCLYPGM---------HTSEWPAL 93 (270)
Q Consensus 34 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~L~~---L~------L~~~~~L~~~~~~~---------~~~~~~~L 93 (270)
.+++.|++.++ .+.+ ..+ ..++++++|++|++.. +. +.++++|+.+.... ....+++|
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCC-CccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 68999999997 4543 223 2478999999987552 11 34455555443211 12357788
Q ss_pred cEEEeccCCCce-eecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCC-CCCEEEecCccccccccccccccc
Q 038160 94 EILSVHRCDKLK-IFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA-MIKELKLYRPYHLKQLCKQDSKLG 169 (270)
Q Consensus 94 ~~L~i~~c~~l~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~ 169 (270)
++|+++++. ++ ..|... .+.++.++...-.+.. . +......++ +|+.|+++++. +..... ...
T Consensus 128 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~---~p~~l~~l~~~L~~L~L~~N~-l~~~~~---~~~ 194 (313)
T 1ogq_A 128 VTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISG-----A---IPDSYGSFSKLFTSMTISRNR-LTGKIP---PTF 194 (313)
T ss_dssp CEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEE-----E---CCGGGGCCCTTCCEEECCSSE-EEEECC---GGG
T ss_pred CEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccC-----c---CCHHHhhhhhcCcEEECcCCe-eeccCC---hHH
Confidence 888888874 33 333211 2222222211000000 0 000011244 78888888773 321111 112
Q ss_pred ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCc
Q 038160 170 PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVE 249 (270)
Q Consensus 170 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 249 (270)
..++ |++|+++++. ++...+.....+++|++|+++++.- .... +.+..+++|++|+++++. +.... +
T Consensus 195 ~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~-------p 261 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSL-AFDL--GKVGLSKNLNGLDLRNNR-IYGTL-------P 261 (313)
T ss_dssp GGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEE-CCBG--GGCCCCTTCCEEECCSSC-CEECC-------C
T ss_pred hCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCce-eeec--CcccccCCCCEEECcCCc-ccCcC-------C
Confidence 2334 8888888864 3333344456788999999987743 2221 224567889999999885 33221 1
Q ss_pred cceeecCccCeeecCCC
Q 038160 250 KEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 250 ~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++.+.
T Consensus 262 ~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp GGGGGCTTCCEEECCSS
T ss_pred hHHhcCcCCCEEECcCC
Confidence 12225788888888765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=104.34 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++. +..+. ....+++|++|++++|. +....+ ...+++|++|++++| ++..+ .....+
T Consensus 286 l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l 352 (466)
T 1o6v_A 286 LTALTNLELNENQ-LEDIS-----PISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANL 352 (466)
T ss_dssp CTTCSEEECCSSC-CSCCG-----GGGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTC
T ss_pred CCccCeEEcCCCc-ccCch-----hhcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCC-ccCCc---hhhccC
Confidence 5566666666652 22221 12345666666666653 322222 335566666666655 33332 223455
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
++|+.|++++|
T Consensus 353 ~~L~~L~l~~n 363 (466)
T 1o6v_A 353 TNINWLSAGHN 363 (466)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEeCCCC
Confidence 66666666655
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-10 Score=96.28 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+.+ ..++++++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-----KDDFK-GLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLY 108 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-----TTTTT-TCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEE
T ss_pred CCCCeEEECCCCcCCccC-----HhHhh-CCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEE
Confidence 356777777776666542 22222 7788888888776 4555533 3366777777775
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=98.02 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++.+. |..+. .+++|++|+++++ .++.++.. + .++|++| ++++. .++.+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~l~~~--~--~~~L~~L-----~l~~n-~i~~~ 138 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIH-----EKAFS-PLRKLQKLYISKN-HLVEIPPN--L--PSSLVEL-----RIHDN-RIRKV 138 (332)
T ss_dssp TCTTCCEEECCSSCCCEEC-----GGGST-TCTTCCEEECCSS-CCCSCCSS--C--CTTCCEE-----ECCSS-CCCCC
T ss_pred CCCCCcEEECCCCccCccC-----HhHhh-CcCCCCEEECCCC-cCCccCcc--c--cccCCEE-----ECCCC-ccCcc
Confidence 5789999999998888752 33333 7999999999987 46655332 1 2667666 44443 23333
Q ss_pred cCCccccCCCcccEEEeccCC
Q 038160 82 YPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~ 102 (270)
... ....+++|++|+++++.
T Consensus 139 ~~~-~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 139 PKG-VFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CSG-GGSSCSSCCEEECCSCC
T ss_pred CHh-HhCCCccCCEEECCCCc
Confidence 221 12457788888887774
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=95.59 Aligned_cols=200 Identities=23% Similarity=0.207 Sum_probs=132.2
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+.+++++++.+++. +|.. ..++|++|+++++ .++.++ ...++++++|++| ++++. +++.+...
T Consensus 17 ~~~~l~~~~~~l~~------ip~~---~~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L-----~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA------IPSN---IPADTKKLDLQSN-KLSSLP-SKAFHRLTKLRLL-----YLNDN-KLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSS------CCSC---CCTTCSEEECCSS-CCSCCC-TTSSSSCTTCCEE-----ECCSS-CCSCCCTT
T ss_pred CCCEEEccCCCCCc------cCCC---CCCCCCEEECcCC-CCCeeC-HHHhcCCCCCCEE-----ECCCC-ccCeeChh
Confidence 46778888877775 4543 3467999999987 466653 3346788888877 45443 34433332
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccc
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ 164 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~ 164 (270)
. ...+++|++|+++++. ++.++. +....+++|+.|+++++ ++..+..
T Consensus 80 ~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------------~~~~~l~~L~~L~l~~n-~l~~~~~- 126 (270)
T 2o6q_A 80 I-FKELKNLETLWVTDNK-LQALPI-----------------------------GVFDQLVNLAELRLDRN-QLKSLPP- 126 (270)
T ss_dssp T-TSSCTTCCEEECCSSC-CCCCCT-----------------------------TTTTTCSSCCEEECCSS-CCCCCCT-
T ss_pred h-hcCCCCCCEEECCCCc-CCcCCH-----------------------------hHcccccCCCEEECCCC-ccCeeCH-
Confidence 1 2457899999999884 444431 01123789999999987 3443322
Q ss_pred cccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeecc
Q 038160 165 DSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVIND 244 (270)
Q Consensus 165 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 244 (270)
.....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|+++++ .+..+..
T Consensus 127 --~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-- 198 (270)
T 2o6q_A 127 --RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPE-- 198 (270)
T ss_dssp --TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCT--
T ss_pred --HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeC-hhHhccCCCcCEEECCCC-cCCcCCH--
Confidence 223468999999999974 55655554567899999999987 455543 334567899999999998 4554421
Q ss_pred CCCCccceeecCccCeeecCCCC
Q 038160 245 KDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 245 ~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|++.+.|
T Consensus 199 -----~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 -----GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----TTTTTCTTCCEEECCSSC
T ss_pred -----HHhccccCCCEEEecCCC
Confidence 011247889999987654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-10 Score=98.96 Aligned_cols=200 Identities=22% Similarity=0.209 Sum_probs=126.9
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|+++.+... +|.+.+..+++|+++.+.++.+++.+.+ ..++.+++|++|++..-.+...+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~~-----i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~--- 122 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV--- 122 (350)
T ss_dssp TCTTCCEEEEECCTTCCE-----ECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---
T ss_pred CCCCCCEEECcCCCCCCc-----cChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCch---
Confidence 478999999999776442 3444444788888888888888988744 4478899998886544333332211
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccc----cccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQ----NNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYH 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~ 157 (270)
......++..+++.++.+++.++..... ....+...--.+.. +........+++++.+.++..
T Consensus 123 ----~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---------i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 123 ----HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---------IHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp ----TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------ECTTSSTTEEEEEEECTTCTT
T ss_pred ----hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------CChhhccccchhHHhhccCCc
Confidence 1123445677888787777766632111 11111110000000 000011245788888888877
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
++.+..+ +...+++|++|+++++ .++.+++. .|.+|++|.+.++.+++.+.. ...+++|+.+++.+
T Consensus 190 l~~i~~~---~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPND---VFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTT---TTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ccCCCHH---HhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 7776432 2346889999999986 47666443 588999999999999887753 46788899888865
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=110.18 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|+++++++... +|..+. .+++|++|++++|. +.+..+. .++.+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~-----~p~~l~-~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~ 448 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK-----IPPTLS-NCSELVSLHLSFNY-LSGTIPS-SLGSLSKLRDLK 448 (768)
T ss_dssp TCCCCEEECCSSEEEEE-----CCGGGG-GCTTCCEEECCSSE-EESCCCG-GGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccc-----cCHHHh-cCCCCCEEECcCCc-ccCcccH-HHhcCCCCCEEE
Confidence 45677777766655532 233333 55566666665552 3222221 244555555444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=105.45 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=34.5
Q ss_pred ccccceEEEecCcchhhhc--CCCcccCcCCcEEEeeCCcCCcccCC-hhHHhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILL--PSSSVSFRNLAKLVAFGCKELIHLVT-SSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c 234 (270)
+++|++|+++++.-....+ +.....+++|++|++++| +++.+.. ...+..+++|+.|++++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC
Confidence 5566666666654332221 111345677777777765 3333211 123566778888888887
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-10 Score=108.03 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCCCEEEecCccccccccccccccc-ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc-----CCcccCChh
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLG-PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK-----ELIHLVTSS 218 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-----~l~~l~~~~ 218 (270)
++|+.|+++++ ++..+.. ... ..+++|+.|+++++. +..+ |.....+++|+.|++++++ ++... .+.
T Consensus 728 ~~L~~L~Ls~N-~L~~lp~---~l~~~~l~~L~~L~Ls~N~-L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~ 800 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLTSLSD---DFRATTLPYLSNMDVSYNC-FSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPT 800 (876)
T ss_dssp GGCCEEECCSS-CCCCCCG---GGSTTTCTTCCEEECCSSC-CSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCT
T ss_pred CCccEEECCCC-CCccchH---HhhhccCCCcCEEEeCCCC-CCcc-chhhhcCCCCCEEECCCCCCccccccccc-ChH
Confidence 37788888777 4543321 111 257788888888764 4444 3336677888888887643 22222 223
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+..+++|+.|++++|. +..+. . ..+++|+.|++.+++
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip--------~--~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVD--------E--KLTPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCC--------S--CCCSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCC-CCccC--------H--hhcCCCCEEECCCCC
Confidence 45667888888888874 34441 0 134678888877775
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-12 Score=118.81 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=28.3
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEe
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVA 205 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i 205 (270)
+++|++|++++|. +..... ......+++|++|++++|-.-..+ ......+++|++|++
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l--~~~~~~~~~L~~L~l~~~~~~~~l-~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDL--VKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRV 345 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHH--HHHHTTCTTCCEEEEEGGGHHHHH-HHHHHHCTTCCEEEE
T ss_pred hCCCCEEEccCCC-CCHHHH--HHHHhcCCCcCEEeCcCccCHHHH-HHHHHhCCCCCEEEE
Confidence 5677778777775 332110 011224566777777666211111 111223566666666
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=101.08 Aligned_cols=93 Identities=26% Similarity=0.256 Sum_probs=64.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+ +...++++++|++| ++++. .++.+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L-----~L~~n-~l~~l 139 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIE-----EDSFS-SLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTFL-----NLLGN-PYKTL 139 (353)
T ss_dssp TCTTCCEEECTTSCCCEEC-----TTTTT-TCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSEE-----ECTTC-CCSSS
T ss_pred cCCCCCEEECCCCccCccC-----HhhcC-CCCCCCEEECCCC-cCCcC-CHhHhCCCccCCEE-----ECCCC-CCccc
Confidence 5789999999998888742 22233 7899999999987 46655 44446788888887 45444 33333
Q ss_pred cCCccccCCCcccEEEeccCCCceeec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
........+++|++|+++++..++.++
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CchhhhccCCCCcEEECCCCccccccC
Confidence 331223468899999999987666654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-10 Score=107.54 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=32.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.+++|++|+++++. ++.+.+.....+++|++|+++++ ++..+. ...+..+++|+.|+++++
T Consensus 312 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 312 GLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQ-DQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp TCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCC-SSCSCSCCCCCEEEEETC
T ss_pred CCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccC-hhhhcCCCCCCEEECCCC
Confidence 35566666666543 33333333455666666666655 333332 223355666666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=102.00 Aligned_cols=76 Identities=24% Similarity=0.148 Sum_probs=44.2
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|+++++ .++.++ ..+++|++|+++++ +++.+.. .+++|+.|++++|. +.++. ..
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp--------~~ 279 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLP--------ES 279 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCC--------GG
T ss_pred CCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCC--------HH
Confidence 466777777765 344432 34577777777765 4544322 45677777777773 44331 11
Q ss_pred eeecCccCeeecCCCC
Q 038160 252 EIVFCKLKTLQLFDLD 267 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~~ 267 (270)
...+++|+.|++.+.+
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 2246777777777654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-10 Score=107.41 Aligned_cols=85 Identities=21% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|+++.++.+.. ..+. .+++|++|++++|.....+ ++..++++++|++|+ |+++ +++...
T Consensus 23 p~~l~~LdLs~N~i~~i~~-----~~~~-~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~-----Ls~N-~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA-----SSFP-FLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILD-----LGSS-KIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECS-----SSCS-SCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEE-----CTTC-CCCEEC
T ss_pred CCCcCEEECCCCcCCccCh-----hHCc-ccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEE-----CCCC-cCcccC
Confidence 4789999999988887532 3333 8999999999998666555 334478888888875 4333 233332
Q ss_pred CCccccCCCcccEEEeccC
Q 038160 83 PGMHTSEWPALEILSVHRC 101 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c 101 (270)
+.. ...+++|++|++++|
T Consensus 90 p~~-~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 90 PDA-FQGLFHLFELRLYFC 107 (844)
T ss_dssp TTS-SCSCSSCCCEECTTC
T ss_pred HhH-ccCCcccCEeeCcCC
Confidence 221 124555566665555
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=98.37 Aligned_cols=206 Identities=16% Similarity=0.095 Sum_probs=119.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+.. .|.... .+++|++|+++++ .+..++.. +..+++|++|++..-.+. .+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~---~~~~~~-~~~~L~~L~Ls~n-~i~~l~~~--~~~l~~L~~L~l~~n~l~------~~ 116 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGC---CSQSDF-GTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLK------QM 116 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEE---EEHHHH-SCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEE------SS
T ss_pred ccccCCEEECCCCccCcccC---cccccc-cccccCEEECCCC-ccccChhh--cCCCCCCCEEECCCCccc------cc
Confidence 57899999999988875422 123333 6899999999987 45555333 677888887753332222 22
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
........+++|++|+++++. ++...... .+.++.++...-.+.. .. .......+++|+.|+++++ ++
T Consensus 117 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~---~~~~~~~l~~L~~L~Ls~n-~l 187 (306)
T 2z66_A 117 SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE----NF---LPDIFTELRNLTFLDLSQC-QL 187 (306)
T ss_dssp TTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG----GE---ECSCCTTCTTCCEEECTTS-CC
T ss_pred ccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc----cc---chhHHhhCcCCCEEECCCC-Cc
Confidence 211123456778888888774 33222111 1122222110000000 00 0011233889999999988 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc-cCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL-VRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++. +...... .+..+ ++|+.|++++++
T Consensus 188 ~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 188 EQLSP---TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEECT---TTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred CCcCH---HHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 44322 223457899999999875 444444335668999999999874 4443332 23445 489999999874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=103.92 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|++++|.-...... .....+++|++|++++|. ++.+.+.....+++|++|++++| +++.+. +..+..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 516 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP-DGIFDR 516 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTT
T ss_pred cCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC-HHHhhc
Confidence 388999999999952211111 224458999999999985 55555555678899999999987 566553 345578
Q ss_pred ccCCcEEEEecCC
Q 038160 223 LVRLVKVQVYGCR 235 (270)
Q Consensus 223 l~~L~~L~i~~c~ 235 (270)
+++|+.|++++++
T Consensus 517 l~~L~~L~l~~N~ 529 (570)
T 2z63_A 517 LTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCcEEEecCCc
Confidence 8999999999975
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=104.30 Aligned_cols=112 Identities=19% Similarity=0.056 Sum_probs=58.8
Q ss_pred CCCCCEEEecCccccccccccc----c-cccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD----S-KLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~----~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
+++|+.|+++++ ++..++... . .....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+ +..
T Consensus 503 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~ 578 (680)
T 1ziw_A 503 LEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTL-PAS 578 (680)
T ss_dssp CTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTT
T ss_pred ccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CCCcC-CHh
Confidence 667777777766 344332211 0 012346677777777653 44444433455677777777643 45543 223
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCcccee-ecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEI-VFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 267 (270)
.+..+++|+.|+++++ ++..+.. .... .+++|+.|++.+.|
T Consensus 579 ~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKN-LITSVEK-------KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCH-------HHHHHHHTTCSEEECTTCC
T ss_pred HhCCCCCCCEEECCCC-cCCccCh-------hHhcccccccCEEEccCCC
Confidence 4456677777777776 2333310 0001 35666666666543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-10 Score=93.31 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=102.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++++++|++| ++++. .++.+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~-----~~~~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~L~~n-~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-----YSFF-SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTL-----ILTGN-PIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCCEECT-----TTTT-TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEE-----ECTTC-CCCEECT
T ss_pred CCccEEECCCCcccccCH-----hHhc-cccCCcEEECCCC-cCCccCH-HHccCCcCCCEE-----ECCCC-ccCccCh
Confidence 358999999888877432 1232 7899999999887 5666533 336778888777 45544 2444433
Q ss_pred CccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.++... .+.++.++...-.+.... +......+++|+.|+++++ +++.
T Consensus 94 ~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N-~l~~ 163 (276)
T 2z62_A 94 GA-FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSN-KIQS 163 (276)
T ss_dssp TT-TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSS-CCCE
T ss_pred hh-hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceec-------CchhhccCCCCCEEECCCC-CCCc
Confidence 22 2457788888888773 33332111 111111111000000000 0001122566777777666 2333
Q ss_pred cccccccccccccccc----eEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 161 LCKQDSKLGPIFQYLE----ILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+... ....+++|+ +|+++++. ++.+.+. .....+|++|+++++. ++.+. ...+..+++|+.|++++
T Consensus 164 ~~~~---~~~~l~~L~~l~l~L~ls~n~-l~~~~~~-~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 164 IYCT---DLRVLHQMPLLNLSLDLSLNP-MNFIQPG-AFKEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECGG---GGHHHHTCTTCCEEEECCSSC-CCEECTT-SSCSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCS
T ss_pred CCHH---HhhhhhhccccceeeecCCCc-ccccCcc-ccCCCcccEEECCCCc-eeecC-HhHhcccccccEEEccC
Confidence 2211 122234444 56666543 3333333 3334467777777654 54432 23345677777777774
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-10 Score=107.73 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=70.9
Q ss_pred CCCCCEEEecCccccccccccccc-c---cccccccceEEEecCcchhhhcCCCcc--cCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSK-L---GPIFQYLEILGVYHSQSLLILLPSSSV--SFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~-~---~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
+++|+.|+++++ ++..+...... . ...+++|++|++++|. ++.++.. .. .+++|++|+++++ ++..+ +
T Consensus 696 l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~l--p 769 (876)
T 4ecn_A 696 GSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD-FRATTLPYLSNMDVSYN-CFSSF--P 769 (876)
T ss_dssp TCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG-GSTTTCTTCCEEECCSS-CCSSC--C
T ss_pred CCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHH-hhhccCCCcCEEEeCCC-CCCcc--c
Confidence 678888888887 44443221100 0 1123489999999874 5555333 44 7899999999976 45543 3
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+..+++|+.|++++++.+..-.... ..+.....+++|+.|++.++.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILR--QWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCC--CCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCCCcccccccc--cChHHHhcCCCCCEEECCCCC
Confidence 345688999999998865222111000 112222358899999998874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=91.41 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=105.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++.++.++.+ + ++. .+++|++|+++++. +..+ + .++.+++|++| +++++ .++.+.
T Consensus 40 l~~L~~L~l~~~~i~~~------~-~l~-~l~~L~~L~l~~n~-l~~~-~--~l~~l~~L~~L-----~L~~n-~l~~~~ 101 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV------Q-GIQ-YLPNVRYLALGGNK-LHDI-S--ALKELTNLTYL-----ILTGN-QLQSLP 101 (272)
T ss_dssp HTTCCEEECTTSCCCCC------T-TGG-GCTTCCEEECTTSC-CCCC-G--GGTTCTTCCEE-----ECTTS-CCCCCC
T ss_pred ccceeeeeeCCCCcccc------c-ccc-cCCCCcEEECCCCC-CCCc-h--hhcCCCCCCEE-----ECCCC-ccCccC
Confidence 46777888877666542 1 122 67888888888763 4443 2 35677777666 45554 344433
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|++++|. ++.++.. ....+++|+.|+++++ ++..+.
T Consensus 102 ~~~-~~~l~~L~~L~L~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~n-~l~~~~ 149 (272)
T 3rfs_A 102 NGV-FDKLTNLKELVLVENQ-LQSLPDG-----------------------------VFDKLTNLTYLNLAHN-QLQSLP 149 (272)
T ss_dssp TTT-TTTCTTCCEEECTTSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhH-hcCCcCCCEEECCCCc-CCccCHH-----------------------------HhccCCCCCEEECCCC-ccCccC
Confidence 321 2356788888888873 4433310 0122677888888877 444332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. .....+++|++|++++|. ++.+.+.....+++|++|+++++. ++.+. ...+..+++|+.|++++++
T Consensus 150 ~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 150 K---GVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp T---TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred H---HHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCC
Confidence 2 112346788888888764 555544434567888888888763 44432 2344667788888887754
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=102.33 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCEEEecCccccccccccccccc-ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc-----CCcccCChhH
Q 038160 146 MIKELKLYRPYHLKQLCKQDSKLG-PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK-----ELIHLVTSST 219 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-----~l~~l~~~~~ 219 (270)
+|+.|+++++ ++..+.. ... ..+++|++|+++++. ++.+ |.....+++|++|+++++. ++.... +..
T Consensus 489 ~L~~L~Ls~N-~l~~lp~---~~~~~~l~~L~~L~Ls~N~-l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~ 561 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSD---DFRATTLPYLVGIDLSYNS-FSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEG 561 (636)
T ss_dssp GCCEEECCSS-CCCBCCG---GGSTTTCTTCCEEECCSSC-CSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC-CTT
T ss_pred CccEEECcCC-cCCccCh---hhhhccCCCcCEEECCCCC-CCCc-ChhhhcCCCCCEEECCCCcccccCcccccC-hHH
Confidence 6777777776 3443321 111 256777777777754 3344 3335667777777776533 122222 233
Q ss_pred HhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 220 AKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 220 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+..+++|+.|++++|. +.++. . ..+++|+.|++.+++
T Consensus 562 l~~l~~L~~L~Ls~N~-l~~ip--------~--~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 562 ITLCPSLTQLQIGSND-IRKVN--------E--KITPNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSSC-CCBCC--------S--CCCTTCCEEECCSCT
T ss_pred HhcCCCCCEEECCCCc-CCccC--------H--hHhCcCCEEECcCCC
Confidence 4567778888877774 34331 0 023667777776664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.3e-10 Score=94.61 Aligned_cols=207 Identities=15% Similarity=0.057 Sum_probs=123.1
Q ss_pred CCCCccEEEEeccccceecccccccCccc-CcCCCccEEEEecCcCccccCCchhhccc-----cccceeEeeeEEeccC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVF-PHFQSLTRLVVWYCDKLKYIFSASMIGNL-----KQLQHLELTTLRLQGL 75 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~L~~L~L~~~ 75 (270)
.+++|++|++++++++.. .|..++ ..+++|++|+++++ .+++. + ..++.+ ++|++| ++++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~-~~~~~l~~~~~~~L~~L-----~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT-----APPPLLEATGPDLNILNLRNV-SWATR-D-AWLAELQQWLKPGLKVL-----SIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC-----CCCCSSSCCSCCCSEEEEESC-BCSSS-S-SHHHHHHTTCCTTCCEE-----EEESC
T ss_pred CcCCccEEEccCCcccch-----hHHHHHHhcCCCccEEEccCC-CCcch-h-HHHHHHHHhhcCCCcEE-----EeeCC
Confidence 477888999988777642 344331 27888999999886 45555 3 235555 676666 45554
Q ss_pred CCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCc
Q 038160 76 PKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRP 155 (270)
Q Consensus 76 ~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c 155 (270)
. ++.+.... ...+++|++|+++++.-....+.. .. .....+++|++|+++++
T Consensus 160 ~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-----~~---------------------~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 160 H-SLNFSCEQ-VRVFPALSTLDLSDNPELGERGLI-----SA---------------------LCPLKFPTLQVLALRNA 211 (312)
T ss_dssp S-CCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHH-----HH---------------------SCTTSCTTCCEEECTTS
T ss_pred C-CccchHHH-hccCCCCCEEECCCCCcCcchHHH-----HH---------------------HHhccCCCCCEEECCCC
Confidence 2 33333222 246788888888888632211100 00 00123788999999988
Q ss_pred ccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 156 YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 156 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
++..+..........+++|++|+++++. ++...+ .....+++|++|+++++. ++.+. ..+. ++|+.|+++++
T Consensus 212 -~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip-~~~~---~~L~~L~Ls~N 284 (312)
T 1wwl_A 212 -GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP-KGLP---AKLSVLDLSYN 284 (312)
T ss_dssp -CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCC-SSCC---SEEEEEECCSS
T ss_pred -cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhh-hhcc---CCceEEECCCC
Confidence 3442211001112346899999999875 444332 224457899999999874 55432 2221 68999999988
Q ss_pred CCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 235 RAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
. +.++. . ...+++|++|++.+-
T Consensus 285 ~-l~~~p--------~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 285 R-LDRNP--------S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CCSCC--------C-TTTSCEEEEEECTTC
T ss_pred C-CCCCh--------h-HhhCCCCCEEeccCC
Confidence 4 44441 1 124788888888764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-09 Score=100.71 Aligned_cols=248 Identities=19% Similarity=0.099 Sum_probs=121.2
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeee--------------
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTT-------------- 69 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~-------------- 69 (270)
++|++|++++++++.+. |..+. .+++|++|+++++ .+....+ ..++++++|++|++..
T Consensus 248 ~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVG-----NDSFA-WLPQLEYFFLEYN-NIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp SCCCEEECTTSCCCEEC-----TTTTT-TCTTCCEEECCSC-CBSEECT-TTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred CCCCEEECCCCCcCccC-----ccccc-CcccccEeeCCCC-ccCccCh-hhhcCCCCccEEeccchhhhcccccccccc
Confidence 45999999988777642 22233 7889999999887 4555433 3367778887776421
Q ss_pred ---EEeccCCCcceecCCc---------cccCCCcccEEEeccCCC-ceeecccc-----cccccCCCCC---CC-----
Q 038160 70 ---LRLQGLPKLRCLYPGM---------HTSEWPALEILSVHRCDK-LKIFTEDL-----SQNNENDQLG---IP----- 123 (270)
Q Consensus 70 ---L~L~~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~-l~~~~~~~-----~~~~~~~~~~---~~----- 123 (270)
..+.++++|+.+.... ....+++|++|++++|.. +..++... .+.++.++.. +.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 0233455555554322 123467888888887741 22332111 0112211110 00
Q ss_pred CCCCCCCCccc---cc-cc-----cCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchh-hhcCCC
Q 038160 124 AQQPPLPLEKE---GC-LE-----KHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLL-ILLPSS 193 (270)
Q Consensus 124 ~~~~l~~~~~~---~c-~e-----~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~ 193 (270)
.+..+..++.+ .+ +. .....+++|+.|+++++. +..+.. .....+++|++|+++++..-. ...+..
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR---NSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT---TTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh---hhhhcCcccccchhccccccccccCCcc
Confidence 00000000000 00 00 011124555555555553 222111 112335667777766653210 112333
Q ss_pred cccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccC-CCCccceeecCccCeeecCCC
Q 038160 194 SVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDK-DGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 194 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 266 (270)
...+++|++|+++++ +++.+ ....+..+++|+.|+++++. +..+..... ++.......+++|+.|++.+.
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 556777888888765 34443 23345677888888888874 433311000 000001124678888888765
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-10 Score=101.48 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+. |..+. .+++|++|+++++ .++.+++ ..++++++|++| ++++. ++++...
T Consensus 26 ~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L-----~Ls~n-~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-----HGDLR-ACANLQVLILKSS-RINTIEG-DAFYSLGSLEHL-----DLSDN-HLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEEC-----SSTTS-SCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEE-----ECTTS-CCCSCCH
T ss_pred CCccEEECcCCccCccC-----hhhhh-cCCcccEEECCCC-CcCccCh-hhccccccCCEE-----ECCCC-ccCccCH
Confidence 56777887777676542 22222 6777888887776 4555433 335667776666 44443 2232222
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCK 163 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~ 163 (270)
. ....+++|++|+++++. ++.++. ......+++|+.|+++++..+..+..
T Consensus 92 ~-~~~~l~~L~~L~Ls~n~-l~~~~~----------------------------~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 92 S-WFGPLSSLKYLNLMGNP-YQTLGV----------------------------TSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp H-HHTTCTTCCEEECTTCC-CSSSCS----------------------------SCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred H-HhccCCCCcEEECCCCc-ccccch----------------------------hhhhhccCCccEEECCCCccccccCH
Confidence 1 12356677777777763 322110 00012277788888887754444321
Q ss_pred ccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 164 QDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|+++++. ++...+.....+++|++|++.++.. ..+ .......+++|+.|+++++.
T Consensus 142 ---~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 142 ---IDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp ---TTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCB
T ss_pred ---hhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCcc-ccc-chhhHhhcccccEEEccCCc
Confidence 123347788888888765 3333344456677777777776643 211 22233457778888877764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=96.39 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=117.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|+++++ .++.+ ++..++.+++|++| +++++. ++.... ...+++|++|+++++. ++.++..
T Consensus 32 ~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L-----~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~~~- 98 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQI-SAADLAPFTKLELL-----NLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELLVG- 98 (317)
T ss_dssp TGGGCSEEECTTS-CCCCC-CHHHHTTCTTCCEE-----ECTTSC-CEEEEE---ETTCTTCCEEECCSSE-EEEEEEC-
T ss_pred cCCCCCEEECcCC-ccCcC-CHHHhhCCCcCCEE-----ECCCCc-CCcchh---hhhcCCCCEEECcCCc-cccccCC-
Confidence 6789999999997 56665 33447888988887 555542 333322 3568899999999984 6655521
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccC-cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKH-LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
+.++.++...-. +.+. ...+++|+.|+++++ ++..+.. .....+++|++|+++++. ++...
T Consensus 99 -~~L~~L~l~~n~------------l~~~~~~~~~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~ 160 (317)
T 3o53_A 99 -PSIETLHAANNN------------ISRVSCSRGQGKKNIYLANN-KITMLRD---LDEGCRSRVQYLDLKLNE-IDTVN 160 (317)
T ss_dssp -TTCCEEECCSSC------------CSEEEECCCSSCEEEECCSS-CCCSGGG---BCTGGGSSEEEEECTTSC-CCEEE
T ss_pred -CCcCEEECCCCc------------cCCcCccccCCCCEEECCCC-CCCCccc---hhhhccCCCCEEECCCCC-CCccc
Confidence 223322211000 0000 112778888888887 3443321 123457889999998864 43333
Q ss_pred CCC-cccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 191 PSS-SVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 191 ~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.. ...+++|++|+++++. ++.+.. ...+++|+.|+++++. +.++.. ....+++|+.|++.++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN 224 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS
T ss_pred HHHHhhccCcCCEEECCCCc-Cccccc---ccccccCCEEECCCCc-CCcchh--------hhcccCcccEEECcCC
Confidence 321 2357899999998874 554422 1247889999999884 555521 1225788898888765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=90.12 Aligned_cols=177 Identities=21% Similarity=0.193 Sum_probs=120.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|+.|++.++ .++.+. .++.+++|++| +++++. ++.+. ....+++|++|++++| .++.++..
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~---~l~~l~~L~~L-----~l~~n~-l~~~~---~l~~l~~L~~L~L~~n-~l~~~~~~- 103 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVRYL-----ALGGNK-LHDIS---ALKELTNLTYLILTGN-QLQSLPNG- 103 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT---TGGGCTTCCEE-----ECTTSC-CCCCG---GGTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred cccceeeeeeCCC-Cccccc---ccccCCCCcEE-----ECCCCC-CCCch---hhcCCCCCCEEECCCC-ccCccChh-
Confidence 7899999999887 355442 26778888777 455542 33332 2346889999999998 35444310
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
....+++|+.|+++++ ++..+.. .....+++|++|++++| .++.+.+
T Consensus 104 ----------------------------~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~ 150 (272)
T 3rfs_A 104 ----------------------------VFDKLTNLKELVLVEN-QLQSLPD---GVFDKLTNLTYLNLAHN-QLQSLPK 150 (272)
T ss_dssp ----------------------------TTTTCTTCCEEECTTS-CCCCCCT---TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ----------------------------HhcCCcCCCEEECCCC-cCCccCH---HHhccCCCCCEEECCCC-ccCccCH
Confidence 0123889999999998 3444322 12345899999999998 4666655
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++++| +++.+. ...+..+++|+.|+++++. +..+.. .....+++|++|++.+.
T Consensus 151 ~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLKDLRLYQNQ-LKSVPD-------GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSS
T ss_pred HHhccCccCCEEECCCC-CcCccC-HHHhcCCccCCEEECCCCc-CCccCH-------HHHhCCcCCCEEEccCC
Confidence 54567899999999988 455543 3345788999999999984 444321 11124788999998764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=91.84 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=110.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+ |. +. .+++|++|+++++ .++++.+ ++.+++|++|+ +++. .++.+.
T Consensus 45 l~~L~~L~l~~~~i~~~------~~-~~-~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~-----l~~n-~l~~~~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV------QG-IQ-YLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLF-----LDEN-KVKDLS 106 (291)
T ss_dssp HHTCCEEECTTSCCCCC------TT-GG-GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEE-----CCSS-CCCCGG
T ss_pred cCcccEEEccCCCcccC------hh-Hh-cCCCCCEEEccCC-ccCCCcc---cccCCCCCEEE-----CCCC-cCCCCh
Confidence 46788888888777653 21 22 6888888888876 4555433 66777777764 4443 233322
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ...+++|++|++++|. ++.++. ...+++|+.|+++++ ++..+
T Consensus 107 ~---l~~l~~L~~L~L~~n~-i~~~~~-------------------------------l~~l~~L~~L~l~~n-~l~~~- 149 (291)
T 1h6t_A 107 S---LKDLKKLKSLSLEHNG-ISDING-------------------------------LVHLPQLESLYLGNN-KITDI- 149 (291)
T ss_dssp G---GTTCTTCCEEECTTSC-CCCCGG-------------------------------GGGCTTCCEEECCSS-CCCCC-
T ss_pred h---hccCCCCCEEECCCCc-CCCChh-------------------------------hcCCCCCCEEEccCC-cCCcc-
Confidence 1 3467788888888873 443321 112788999999988 34433
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|++++|. ++.+.+ ...+++|++|+++++ .++++ +....+++|+.|++++++
T Consensus 150 ----~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N-~i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 ----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred ----hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC-cCCCC---hhhccCCCCCEEECcCCc
Confidence 123458899999999874 444433 567899999999987 55554 235778999999999874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=101.61 Aligned_cols=116 Identities=12% Similarity=-0.018 Sum_probs=68.6
Q ss_pred CCCCCEEEecCccccccccccccc-c---cccccccceEEEecCcchhhhcCCCcc--cCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSK-L---GPIFQYLEILGVYHSQSLLILLPSSSV--SFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~-~---~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
+++|+.|+++++ ++..+...... . ...+++|++|+++++. ++.++.. .. .+++|++|+++++ +++.+ +
T Consensus 456 l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~i--p 529 (636)
T 4eco_A 456 GSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYN-SFSKF--P 529 (636)
T ss_dssp TCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGG-GSTTTCTTCCEEECCSS-CCSSC--C
T ss_pred CCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChh-hhhccCCCcCEEECCCC-CCCCc--C
Confidence 678888888877 34433221100 0 0113389999999875 4454333 44 7899999999986 45543 3
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|+++++..+..-.... ..+.....+++|+.|++.++.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLR--EWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCC--CCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccc--cChHHHhcCCCCCEEECCCCc
Confidence 345678999999997765221110000 112222357899999988764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-11 Score=110.08 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=30.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.+++|++|+++++.+... + ++..+. .+++|++|++.++ +..........++++|++|
T Consensus 291 ~~~~L~~L~Ls~~~l~~~--~--~~~~~~-~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETE--D--HCTLIQ-KCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp GGGGCCEEEETTCCCCHH--H--HHHHHT-TCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred hcCCCcEEecCCCcCCHH--H--HHHHHH-hCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence 356888888888555431 1 111112 6777888777743 2221122223456666655
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-11 Score=113.67 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.+++|++|++++|. +........++++++|++|+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEe
Confidence 46788888888776 54332233345677776663
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-10 Score=102.42 Aligned_cols=167 Identities=18% Similarity=0.227 Sum_probs=112.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.+..+ | .+. .+++|+.|++++| .+..+++ ++.+++|+.|+ |+++ .++.+.
T Consensus 42 L~~L~~L~l~~n~i~~l------~-~l~-~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~-----Ls~N-~l~~l~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV------Q-GIQ-YLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLF-----LDEN-KIKDLS 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCC------T-TGG-GCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEE-----CCSS-CCCCCT
T ss_pred CCCCCEEECcCCCCCCC------h-HHc-cCCCCCEEEeeCC-CCCCChh---hccCCCCCEEE-----CcCC-CCCCCh
Confidence 56788888888777653 2 233 7899999999887 4555533 67788887774 4443 233322
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
....+++|+.|++++|. +..++. ...+++|+.|+++++ ++..+
T Consensus 104 ---~l~~l~~L~~L~Ls~N~-l~~l~~-------------------------------l~~l~~L~~L~Ls~N-~l~~l- 146 (605)
T 1m9s_A 104 ---SLKDLKKLKSLSLEHNG-ISDING-------------------------------LVHLPQLESLYLGNN-KITDI- 146 (605)
T ss_dssp ---TSTTCTTCCEEECTTSC-CCCCGG-------------------------------GGGCTTCSEEECCSS-CCCCC-
T ss_pred ---hhccCCCCCEEEecCCC-CCCCcc-------------------------------ccCCCccCEEECCCC-ccCCc-
Confidence 13467888899888884 433321 112788999999888 34433
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|+.|++++|. +..+.+ ...+++|++|++++| ++.++ +.+..+++|+.|++++|+
T Consensus 147 ----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 ----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEECCSEE
T ss_pred ----hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEccCCc
Confidence 124458899999999874 444433 567899999999987 45554 346778999999999874
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-09 Score=90.81 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+ +. +. .+++|++|+++++. ++.+ + .++.+++|++| +++++. ++.+
T Consensus 61 ~l~~L~~L~L~~n~i~~~------~~-~~-~l~~L~~L~L~~n~-l~~~-~--~~~~l~~L~~L-----~l~~n~-l~~~ 122 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDL------AP-LK-NLTKITELELSGNP-LKNV-S--AIAGLQSIKTL-----DLTSTQ-ITDV 122 (308)
T ss_dssp GCTTCCEEECCSSCCCCC------GG-GT-TCCSCCEEECCSCC-CSCC-G--GGTTCTTCCEE-----ECTTSC-CCCC
T ss_pred ccCCCCEEEccCCcCCCC------hh-Hc-cCCCCCEEEccCCc-CCCc-h--hhcCCCCCCEE-----ECCCCC-CCCc
Confidence 478999999999888763 22 33 89999999999984 6654 2 36788888877 455442 3333
Q ss_pred cCCccccCCCcccEEEeccCCCceeecc-cccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTE-DLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.++. ...+.++.++..--.+.. +.. ...+++|+.|+++++ ++..
T Consensus 123 ~~---l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n-~l~~ 187 (308)
T 1h6u_A 123 TP---LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD---------LTP-LANLSKLTTLKADDN-KISD 187 (308)
T ss_dssp GG---GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSS-CCCC
T ss_pred hh---hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCC---------Chh-hcCCCCCCEEECCCC-ccCc
Confidence 21 3467888888888873 444332 112223322221100100 001 233889999999998 3443
Q ss_pred cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 161 LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+.. ...+++|++|++++|. +..+. . ...+++|++|++++++
T Consensus 188 ~~~-----l~~l~~L~~L~L~~N~-l~~~~-~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISP-----LASLPNLIEVHLKNNQ-ISDVS-P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-----GGGCTTCCEEECTTSC-CCBCG-G-GTTCTTCCEEEEEEEE
T ss_pred Chh-----hcCCCCCCEEEccCCc-cCccc-c-ccCCCCCCEEEccCCe
Confidence 321 3458999999999975 44433 2 5678999999999875
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=92.74 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=65.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccC---cCCcEEEeeCCcCCcccCChhHH
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF---RNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~---~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
+++|++|+++++ +++.+..........+++|++|+++++. ++...|.....+ ++|++|+++++ +++.+. ..+
T Consensus 196 l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~- 270 (310)
T 4glp_A 196 FPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-KGL- 270 (310)
T ss_dssp SCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-SCC-
T ss_pred CCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchh-hhh-
Confidence 778888888887 4443211100112346889999999865 444433223344 79999999876 455442 222
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.++|+.|+++++. +..+.. ...+++|+.|++.+-
T Consensus 271 --~~~L~~L~Ls~N~-l~~~~~---------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 271 --PAKLRVLDLSSNR-LNRAPQ---------PDELPEVDNLTLDGN 304 (310)
T ss_dssp --CSCCSCEECCSCC-CCSCCC---------TTSCCCCSCEECSST
T ss_pred --cCCCCEEECCCCc-CCCCch---------hhhCCCccEEECcCC
Confidence 2689999999884 443311 124688998888764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-09 Score=86.45 Aligned_cols=176 Identities=17% Similarity=0.189 Sum_probs=103.3
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+.+++++++.+++. +|.+ ..+++++|++.++ .+..+.+ ..++++++|++| ++++. +++.+...
T Consensus 15 ~~~~l~~~~~~l~~------~p~~---~~~~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L-----~L~~n-~l~~~~~~ 77 (251)
T 3m19_A 15 GKKEVDCQGKSLDS------VPSG---IPADTEKLDLQST-GLATLSD-ATFRGLTKLTWL-----NLDYN-QLQTLSAG 77 (251)
T ss_dssp GGTEEECTTCCCSS------CCSC---CCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEE-----ECTTS-CCCCCCTT
T ss_pred CCeEEecCCCCccc------cCCC---CCCCCCEEEccCC-CcCccCH-hHhcCcccCCEE-----ECCCC-cCCccCHh
Confidence 45677777766665 4544 3467888888876 4555533 336677777766 45553 34443332
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccc
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ 164 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~ 164 (270)
. ...+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+..
T Consensus 78 ~-~~~l~~L~~L~L~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~~~~- 124 (251)
T 3m19_A 78 V-FDDLTELGTLGLANNQ-LASLPLG-----------------------------VFDHLTQLDKLYLGGN-QLKSLPS- 124 (251)
T ss_dssp T-TTTCTTCCEEECTTSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred H-hccCCcCCEEECCCCc-ccccChh-----------------------------HhcccCCCCEEEcCCC-cCCCcCh-
Confidence 1 2357788888888873 4433310 0112667777777776 4443322
Q ss_pred cccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 165 DSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 165 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|+++++ .++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|++++++
T Consensus 125 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 125 --GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred --hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 11234677777877775 355554443556777888887765 344432 2344567777888777754
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-09 Score=96.40 Aligned_cols=192 Identities=10% Similarity=-0.019 Sum_probs=119.0
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|+++++ .+..+++ ..++.+++|++| +|+++. +++..+ ...+++|++|++++| .++.++..
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L-----~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~~- 98 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELL-----NLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELLVG- 98 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEE-----ECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEEEC-
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEE-----EeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCCCC-
Confidence 4569999999997 5666533 447888988877 566653 443332 356899999999999 46665532
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
+.+..++...-.+. ..+ ...+++|+.|+++++ ++..+.. .....+++|++|+++++. +....+
T Consensus 99 -~~L~~L~L~~N~l~------~~~-----~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (487)
T 3oja_A 99 -PSIETLHAANNNIS------RVS-----CSRGQGKKNIYLANN-KITMLRD---LDEGCRSRVQYLDLKLNE-IDTVNF 161 (487)
T ss_dssp -TTCCEEECCSSCCC------CEE-----ECCCSSCEEEECCSS-CCCSGGG---BCGGGGSSEEEEECTTSC-CCEEEG
T ss_pred -CCcCEEECcCCcCC------CCC-----ccccCCCCEEECCCC-CCCCCCc---hhhcCCCCCCEEECCCCC-CCCcCh
Confidence 23333222110000 000 112778889988887 3443322 123457889999998864 443333
Q ss_pred CCc-ccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSS-VSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
... ..+++|++|+++++. +..+.. ...+++|+.|+++++. +..+.. ....+++|++|++.+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN 224 (487)
T ss_dssp GGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS
T ss_pred HHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCCC-CCCCCH--------hHcCCCCccEEEecCC
Confidence 323 367899999999875 554422 2347889999999984 555421 1225788999988774
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.3e-09 Score=93.62 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=33.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccC-ChhHHhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLV-TSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+++|++|+++++. +....+.....+++|++|+++++. ++.+. .+..+..+++|+.|+++++.
T Consensus 322 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 35666677766654 322223334556667777766653 22211 11234556666666666663
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-09 Score=95.66 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=29.4
Q ss_pred cCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 198 RNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 198 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|++|+++++ +++.+. .. +..+++|+.|+++++. +.++.. .....+++|+.|++.+.|
T Consensus 450 ~~L~~L~L~~N-~l~~ip-~~-~~~l~~L~~L~L~~N~-l~~l~~-------~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIP-KD-VTHLQALQELNVASNQ-LKSVPD-------GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCC-TT-TTSSCCCSEEECCSSC-CCCCCT-------TSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccC-hh-hcCCCCCCEEECCCCC-CCCCCH-------HHHhcCCCCCEEEecCCC
Confidence 45566666554 344321 11 2256666666666653 333311 001246677777776653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=95.43 Aligned_cols=76 Identities=22% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ +++.+. ..+++|++|+++++ .++.++. .+++|++|++++| +++.+ +..+..+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~l--p~~l~~l 283 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTRL--PESLIHL 283 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCSC--CGGGGGS
T ss_pred CCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCcC--CHHHhhc
Confidence 466777777766 444321 34689999999997 4555532 6789999999987 56654 3446789
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++++++
T Consensus 284 ~~L~~L~L~~N~ 295 (622)
T 3g06_A 284 SSETTVNLEGNP 295 (622)
T ss_dssp CTTCEEECCSCC
T ss_pred cccCEEEecCCC
Confidence 999999999986
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-09 Score=83.11 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=99.4
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCcee-eccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKI-FTED 110 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~ 110 (270)
.+++|++|+++++ .++.++ .+..+++|++| +++++ .++.+. ....+++|++|+++++. ++. .+.
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L-----~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~- 106 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT---GIEYAHNIKDL-----TINNI-HATNYN---PISGLSNLERLRIMGKD-VTSDKIP- 106 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT---TGGGCTTCSEE-----EEESC-CCSCCG---GGTTCTTCCEEEEECTT-CBGGGSC-
T ss_pred hcCCccEEeccCC-CccChH---HHhcCCCCCEE-----EccCC-CCCcch---hhhcCCCCCEEEeECCc-cCcccCh-
Confidence 6788888888876 455443 26677777766 56666 444332 23467889999998874 332 110
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 111 LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
....+++|+.|+++++. +..... .....+++|++|++++|..++.+.
T Consensus 107 -----------------------------~l~~l~~L~~L~Ls~n~-i~~~~~---~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 107 -----------------------------NLSGLTSLTLLDISHSA-HDDSIL---TKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp -----------------------------CCTTCTTCCEEECCSSB-CBGGGH---HHHTTCSSCCEEECCSCTBCCCCG
T ss_pred -----------------------------hhcCCCCCCEEEecCCc-cCcHhH---HHHhhCCCCCEEEccCCCCccccH
Confidence 01227889999998873 332111 123457899999999987666653
Q ss_pred CCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 191 PSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 191 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. ...+++|++|++++|. ++++. ....+++|+.|++++.+
T Consensus 154 -~-l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 -P-LKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -G-GGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred -h-hcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 2 5678999999999874 55542 35778999999998874
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=86.60 Aligned_cols=176 Identities=23% Similarity=0.145 Sum_probs=105.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+++++.+..+.. ..+. .+++|++|+++++ .++.+.. .+.+++|++|+ +++. +++.++
T Consensus 30 ~~~l~~L~L~~N~l~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~-----Ls~N-~l~~l~ 93 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSL-----ATLM-PYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLD-----LSHN-QLQSLP 93 (290)
T ss_dssp CTTCCEEECTTSCCSEEEG-----GGGT-TCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEE-----CCSS-CCSSCC
T ss_pred CCCCCEEEcCCCcCCccCH-----HHhh-cCCCCCEEECCCC-ccCcccC---CCCCCcCCEEE-----CCCC-cCCcCc
Confidence 4689999999988887522 2233 8999999999986 4666544 26788887774 4443 233332
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ....+++|++|+++++ +++.++... ...+++|+.|+++++ +++.+.
T Consensus 94 ~--~~~~l~~L~~L~l~~N-~l~~l~~~~-----------------------------~~~l~~L~~L~L~~N-~l~~~~ 140 (290)
T 1p9a_G 94 L--LGQTLPALTVLDVSFN-RLTSLPLGA-----------------------------LRGLGELQELYLKGN-ELKTLP 140 (290)
T ss_dssp C--CTTTCTTCCEEECCSS-CCCCCCSST-----------------------------TTTCTTCCEEECTTS-CCCCCC
T ss_pred h--hhccCCCCCEEECCCC-cCcccCHHH-----------------------------HcCCCCCCEEECCCC-CCCccC
Confidence 2 2246789999999988 355444110 112667777777776 344332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
. .....+++|+.|+++++. ++.+++.....+++|++|+++++ +++.+. ..+...++|+.+.+++.
T Consensus 141 ~---~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip--~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 141 P---GLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIP--KGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp T---TTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCCCSEEECCSC
T ss_pred h---hhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccC--hhhcccccCCeEEeCCC
Confidence 1 122346677777777653 45554443345677777777754 344332 22334456777777653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.2e-10 Score=94.52 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=117.4
Q ss_pred CCCccEEEEeccccceecccccccCcc--cCcCCCccEEEEecCcCccccCC---chhhccccccceeEeeeEEeccCCC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAV--FPHFQSLTRLVVWYCDKLKYIFS---ASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
+++|++|+++++.+... .|..+ . .+++|++|+++++. +....+ ...+..+++|++| +++++.
T Consensus 90 ~~~L~~L~l~~n~l~~~-----~~~~~~~~-~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L-----~Ls~n~- 156 (310)
T 4glp_A 90 YSRLKELTLEDLKITGT-----MPPLPLEA-TGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVL-----SIAQAH- 156 (310)
T ss_dssp HSCCCEEEEESCCCBSC-----CCCCSSSC-CCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEE-----EEECCS-
T ss_pred cCceeEEEeeCCEeccc-----hhhhhhhc-cCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEE-----EeeCCC-
Confidence 46799999999877753 23332 3 78999999999974 443222 1223467777766 565553
Q ss_pred cceecCCccccCCCcccEEEeccCCCcee--ecc----cccccccCCCCCCCCCCCCCCCcccccc-ccCcCCCCCCCEE
Q 038160 78 LRCLYPGMHTSEWPALEILSVHRCDKLKI--FTE----DLSQNNENDQLGIPAQQPPLPLEKEGCL-EKHLGKLAMIKEL 150 (270)
Q Consensus 78 L~~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~c~-e~~~~~~~~L~~L 150 (270)
++..... ....+++|++|+++++.-... ++. ...+.++.+...--.+. . .+.. ......+++|++|
T Consensus 157 l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~---l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 157 SPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---T---PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp SCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---C---HHHHHHHHHHHTCCCSSE
T ss_pred cchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---c---hHHHHHHHHhcCCCCCEE
Confidence 3333322 223678899999999863221 110 01222333222110000 0 0000 0011236899999
Q ss_pred EecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEE
Q 038160 151 KLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQ 230 (270)
Q Consensus 151 ~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 230 (270)
+++++. +....+..-.....+++|++|+++++. ++.++.. .+++|++|+++++ +++.+. ....+++|+.|+
T Consensus 230 ~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~---~~~~L~~L~Ls~N-~l~~~~---~~~~l~~L~~L~ 300 (310)
T 4glp_A 230 DLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG---LPAKLRVLDLSSN-RLNRAP---QPDELPEVDNLT 300 (310)
T ss_dssp ECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC---CCSCCSCEECCSC-CCCSCC---CTTSCCCCSCEE
T ss_pred ECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhh---hcCCCCEEECCCC-cCCCCc---hhhhCCCccEEE
Confidence 999984 444322111111124799999999875 5555333 2489999999976 455442 256789999999
Q ss_pred EecCC
Q 038160 231 VYGCR 235 (270)
Q Consensus 231 i~~c~ 235 (270)
+++.+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 98874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8e-09 Score=86.38 Aligned_cols=177 Identities=18% Similarity=0.111 Sum_probs=99.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+.. ..+ ..+++|++|+++++ .++.+. ...++++++|++|+ +++. +++.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~-----~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~-----l~~n-~l~~~ 115 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIED-----GAY-QSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLV-----AVET-NLASL 115 (276)
T ss_dssp TCTTCSEEECTTCCCCEECT-----TTT-TTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEE-----CTTS-CCCCS
T ss_pred cccCCcEEECCCCcCCccCH-----HHc-cCCcCCCEEECCCC-ccCccC-hhhhcCCccccEEE-----CCCC-Ccccc
Confidence 47899999999988876432 122 27899999999987 455553 33467888888874 4333 22222
Q ss_pred cCCccccCCCcccEEEeccCCCcee--ecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC----EEEec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKI--FTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK----ELKLY 153 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~----~L~i~ 153 (270)
... ....+++|++|+++++. ++. +|... .+.++.++..--.+..+ + ......+++|+ +|+++
T Consensus 116 ~~~-~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~------~--~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 116 ENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI------Y--CTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEE------C--GGGGHHHHTCTTCCEEEECC
T ss_pred Cch-hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcC------C--HHHhhhhhhccccceeeecC
Confidence 211 12356777777777764 332 22111 12222222110000000 0 00011133444 77887
Q ss_pred CcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 154 RPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 154 ~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
+. ++..+... .....+|++|+++++. ++.+++.....+++|++|++++.
T Consensus 186 ~n-~l~~~~~~----~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 LN-PMNFIQPG----AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SS-CCCEECTT----SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CC-cccccCcc----ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 76 34433221 1223489999999875 66665554567899999999954
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=93.14 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=118.2
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcC-----CCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHF-----QSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLP 76 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l-----~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~ 76 (270)
.+++|++|+++++.++.+ |..+. .+ ++|++|+++++ .+..+++ ..++.+++|++| ++++..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~------~~~~~-~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L-----~Ls~N~ 184 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR------DAWLA-ELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTL-----DLSDNP 184 (312)
T ss_dssp CSCCCSEEEEESCBCSSS------SSHHH-HHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEE-----ECCSCT
T ss_pred cCCCccEEEccCCCCcch------hHHHH-HHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEE-----ECCCCC
Confidence 478999999999888764 22222 33 99999999997 4666543 346788888777 677665
Q ss_pred Ccce--ecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecC
Q 038160 77 KLRC--LYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYR 154 (270)
Q Consensus 77 ~L~~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~ 154 (270)
-... +........+++|++|+++++. ++.++... ......+++|+.|++++
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------------------------~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC--------------------------SALAAARVQLQGLDLSH 237 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH--------------------------HHHHHTTCCCSEEECTT
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH--------------------------HHHHhcCCCCCEEECCC
Confidence 3221 1111111468899999999984 44322100 00011268999999998
Q ss_pred cccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 155 PYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 155 c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+. +..... ......+++|++|+++++. ++.++.. .. ++|++|+++++ +++.+ +. +..+++|+.|++++.
T Consensus 238 N~-l~~~~~--~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 238 NS-LRDAAG--APSCDWPSQLNSLNLSFTG-LKQVPKG-LP--AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SC-CCSSCC--CSCCCCCTTCCEEECTTSC-CSSCCSS-CC--SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTC
T ss_pred Cc-CCcccc--hhhhhhcCCCCEEECCCCc-cChhhhh-cc--CCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCC
Confidence 83 443221 0122347899999999875 5555333 22 89999999976 56665 22 577899999999887
Q ss_pred C
Q 038160 235 R 235 (270)
Q Consensus 235 ~ 235 (270)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=94.45 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+.+ +.++++++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-----~~~~~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~ 106 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-----MPDIS-FLSELRVLRLSHN-RIRSLDF-HVFLFNQDLEYLD 106 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-----GGGTT-TCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCCccccC-----hhhhc-cCCCccEEECCCC-CCCcCCH-HHhCCCCCCCEEE
Confidence 367888888887777532 12232 7888888888876 5665533 3367778887776
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-08 Score=88.05 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=32.0
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
++|++|+++++. ++.+ +. .+++|++|+++++ +++.+.. .+++|+.|+++++.
T Consensus 317 ~~L~~L~Ls~N~-l~~l-p~---~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 317 PSLEELNVSNNK-LIEL-PA---LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCSSC-CSCC-CC---CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred CcCCEEECCCCc-cccc-cc---cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 467777777643 3333 22 3577888888766 4444322 35778888888774
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=82.91 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=109.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+++++++..+.. ..+. .+++|++|+++++ .++.+. +..++.+++|++| ++++. +++.+.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~~~ 99 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSD-----ATFR-GLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTL-----GLANN-QLASLP 99 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT-----TTTT-TCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEE-----ECTTS-CCCCCC
T ss_pred CCCCCEEEccCCCcCccCH-----hHhc-CcccCCEEECCCC-cCCccC-HhHhccCCcCCEE-----ECCCC-cccccC
Confidence 3579999999988887422 2233 8999999999996 566653 3446788888877 45554 344443
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|+++++ +++.++.. ....+++|+.|+++++ +++.+.
T Consensus 100 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~~~ 147 (251)
T 3m19_A 100 LGV-FDHLTQLDKLYLGGN-QLKSLPSG-----------------------------VFDRLTKLKELRLNTN-QLQSIP 147 (251)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhH-hcccCCCCEEEcCCC-cCCCcChh-----------------------------HhccCCcccEEECcCC-cCCccC
Confidence 322 246789999999998 45544411 1123789999999998 555443
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKE 210 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~ 210 (270)
. .....+++|++|+++++. ++.+.+.....+++|++|++.+++-
T Consensus 148 ~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 148 A---GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp T---TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred H---HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 2 123458999999999864 5566555466789999999998753
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=90.51 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=68.3
Q ss_pred CCCCCCEEEecCcccccc-cccccccccccccccceEEEecCcchhhhcCCCcccC-cCCcEEEeeCCcCCcccCChhHH
Q 038160 143 KLAMIKELKLYRPYHLKQ-LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF-RNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.+++|+.|+++++. +.. +.. .....+++|++|++++|.-.... +. .+ ++|++|++++| +++.+ + ...
T Consensus 372 ~l~~L~~L~Ls~N~-l~~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~---~l~~~L~~L~Ls~N-~l~~i-p-~~~ 440 (520)
T 2z7x_B 372 QMKSLQQLDISQNS-VSYDEKK---GDCSWTKSLLSLNMSSNILTDTI-FR---CLPPRIKVLDLHSN-KIKSI-P-KQV 440 (520)
T ss_dssp TCTTCCEEECCSSC-CBCCGGG---CSCCCCTTCCEEECCSSCCCGGG-GG---SCCTTCCEEECCSS-CCCCC-C-GGG
T ss_pred hCCCCCEEECCCCc-CCccccc---chhccCccCCEEECcCCCCCcch-hh---hhcccCCEEECCCC-ccccc-c-hhh
Confidence 37888899988874 332 221 12335788999999987633333 22 22 68999999987 45543 2 334
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+++|+.|+++++. +.++... ....+++|++|++.+.|
T Consensus 441 ~~l~~L~~L~L~~N~-l~~l~~~-------~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 441 VKLEALQELNVASNQ-LKSVPDG-------IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGCTTCCEEECCSSC-CCCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred hcCCCCCEEECCCCc-CCccCHH-------HhccCCcccEEECcCCC
Confidence 488999999999984 5544210 11247888999888764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=98.55 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE--------eeeEEec
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE--------LTTLRLQ 73 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~--------L~~L~L~ 73 (270)
...+|++|.++++++.. +|..++ .+++|++|++++|. +.+..|.+ ++.+.+|+.++ +++|+++
T Consensus 9 ~~~~L~~L~l~~n~l~~------iP~~i~-~L~~L~~L~l~~n~-~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTE------MPVEAE-NVKSKTEYYNAWSE-WERNAPPG-NGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp --------------------------------CCHHHHHHHHHH-HHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred ccccchhhhcccCchhh------CChhHh-cccchhhhhccCCc-ccccCCcc-cccchhcchhhhhhhhccCCCEEEec
Confidence 45788999998887754 566665 89999999998874 44332332 56677664333 3555666
Q ss_pred cCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 74 GLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 74 ~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
++. +++++. ..++|++|+++++ .++.+|
T Consensus 80 ~~~-l~~lp~-----~~~~L~~L~l~~n-~l~~lp 107 (454)
T 1jl5_A 80 NLG-LSSLPE-----LPPHLESLVASCN-SLTELP 107 (454)
T ss_dssp TSC-CSCCCS-----CCTTCSEEECCSS-CCSSCC
T ss_pred CCc-cccCCC-----CcCCCCEEEccCC-cCCccc
Confidence 653 444322 1246666666655 343343
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-08 Score=79.22 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=94.5
Q ss_pred ccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccc
Q 038160 57 GNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGC 136 (270)
Q Consensus 57 ~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c 136 (270)
+.+++|++|+ +++. .++.+. ....+++|++|++++| .++.++.
T Consensus 41 ~~l~~L~~L~-----l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~~~--------------------------- 83 (197)
T 4ezg_A 41 AQMNSLTYIT-----LANI-NVTDLT---GIEYAHNIKDLTINNI-HATNYNP--------------------------- 83 (197)
T ss_dssp HHHHTCCEEE-----EESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCCGG---------------------------
T ss_pred hhcCCccEEe-----ccCC-CccChH---HHhcCCCCCEEEccCC-CCCcchh---------------------------
Confidence 5667777664 4443 233222 1246788999999888 4443321
Q ss_pred cccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCC
Q 038160 137 LEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVT 216 (270)
Q Consensus 137 ~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 216 (270)
...+++|+.|+++++ ++.... ......+++|++|++++|.--... +.....+++|++|++++|..+.++.
T Consensus 84 ----l~~l~~L~~L~l~~n-~l~~~~---~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~- 153 (197)
T 4ezg_A 84 ----ISGLSNLERLRIMGK-DVTSDK---IPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM- 153 (197)
T ss_dssp ----GTTCTTCCEEEEECT-TCBGGG---SCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-
T ss_pred ----hhcCCCCCEEEeECC-ccCccc---ChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH-
Confidence 122788999999887 333211 112345788999999887533222 2224568899999999887666652
Q ss_pred hhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 217 SSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 217 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
....+++|+.|++++|. +.++. ....+++|++|++.+-
T Consensus 154 --~l~~l~~L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 --PLKTLPELKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --GGGGCSSCCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC
T ss_pred --hhcCCCCCCEEECCCCC-CcChH---------HhccCCCCCEEEeeCc
Confidence 35778889999998884 44431 1225788888888753
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-10 Score=98.60 Aligned_cols=245 Identities=12% Similarity=0.002 Sum_probs=119.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecC--cCccccCCchh------hccccccceeEeeeEEecc
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYC--DKLKYIFSASM------IGNLKQLQHLELTTLRLQG 74 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~L~~L~L~~ 74 (270)
+++|++|+|+++++...... .++..+. .+++|++|++++| ..+....|... +..+++|++| ++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~-~l~~~l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L-----~Ls~ 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAAR-WLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV-----RLSD 103 (386)
T ss_dssp CSCCCEEECTTSEECHHHHH-HHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE-----ECCS
T ss_pred CCCccEEECCCCCCCHHHHH-HHHHHHH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE-----ECCC
Confidence 57899999998777653110 0222222 6899999999887 34443323221 3567777766 4444
Q ss_pred CCCcceec---CCccccCCCcccEEEeccCCCcee-----ecccc--c---------ccccCCCCCCCCCCCCCCCcccc
Q 038160 75 LPKLRCLY---PGMHTSEWPALEILSVHRCDKLKI-----FTEDL--S---------QNNENDQLGIPAQQPPLPLEKEG 135 (270)
Q Consensus 75 ~~~L~~~~---~~~~~~~~~~L~~L~i~~c~~l~~-----~~~~~--~---------~~~~~~~~~~~~~~~l~~~~~~~ 135 (270)
+. ++... .......+++|++|++++|. ++. ++... . +.++.+....-. +.. ...+
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~---l~~-~~~~ 177 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR---LEN-GSMK 177 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC---CTG-GGHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC---CCc-HHHH
Confidence 32 21100 00011346778888888774 221 11000 0 222222211000 000 0000
Q ss_pred ccccCcCCCCCCCEEEecCccccccccc--ccccccccccccceEEEecCcch----hhhcCCCcccCcCCcEEEeeCCc
Q 038160 136 CLEKHLGKLAMIKELKLYRPYHLKQLCK--QDSKLGPIFQYLEILGVYHSQSL----LILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 136 c~e~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.+......+++|++|++++| ++..... -.......+++|++|++++|.-- ..++ .....+++|++|++++|.
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCC
Confidence 00000112678888888887 3331100 00002335678888888887531 2222 224567888888888775
Q ss_pred CCcccCCh---hHH--hhccCCcEEEEecCCCcceEeeccCCCCccce-eecCccCeeecCCCC
Q 038160 210 ELIHLVTS---STA--KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEE-IVFCKLKTLQLFDLD 267 (270)
Q Consensus 210 ~l~~l~~~---~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 267 (270)
+.+.... ... ..+++|+.|++++|. +.+.... ..+... ..+++|++|++.+++
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~---~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR---TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH---HHHHHHHHHCTTCCEEECTTSB
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHH---HHHHHHHhcCCCceEEEccCCc
Confidence 4433111 112 126788888888884 3321000 001111 136888888887763
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-08 Score=91.11 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=126.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.++.|+.+.+.++...... ... .+++|+.+++++..--...........+.+|+.++ +..... ...
T Consensus 347 ~l~~L~~l~l~~n~~~~~~-------~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~-----~~~~~~-~~~ 412 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAF-------SEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD-----LSFNGV-ITM 412 (635)
T ss_dssp BCTTCCEEEEESCCSCCBC-------CCC-BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE-----CCSCSE-EEE
T ss_pred cchhhhhcccccccCCCCc-------ccc-cccccccchhhccccccccccccchhhhhhhhhhh-----cccccc-ccc
Confidence 3567888888775444321 111 68899999987753322111222345666666663 333221 111
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccc---cccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQ---NNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
.. ....+++|+.+++.++......+..... .+...+...-.+... ..+....+++++.|+++++...
T Consensus 413 ~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~--------~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 413 SS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CS--CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCEEG
T ss_pred cc--cccccccccchhhhhccccccccccccccccccccccccccccccc--------cccccccchhhhhhhhhhcccc
Confidence 11 2245677777777766433322211100 011000000000000 0111223788999999988655
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
..+.. .....+++|++|++++| .++.+.+..+..+++|++|+++++ +++.+.. ..+..+++|+.|+++++. +.
T Consensus 483 ~~~~~---~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~ 555 (635)
T 4g8a_A 483 ENFLP---DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IM 555 (635)
T ss_dssp GGEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CC
T ss_pred cccCc---hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CC
Confidence 54322 22445889999999997 466666666778899999999976 5666533 445788999999999984 44
Q ss_pred eEeeccCCCCccceeec-CccCeeecCCC
Q 038160 239 EVVINDKDGVEKEEIVF-CKLKTLQLFDL 266 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 266 (270)
.+.. .....+ ++|++|++.+-
T Consensus 556 ~~~~-------~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 556 TSKK-------QELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp BCCS-------SCTTCCCTTCCEEECTTC
T ss_pred CCCH-------HHHHhhhCcCCEEEeeCC
Confidence 3321 011123 57999988653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=84.99 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=114.4
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|++++| .+..+. .++.+++|++| +++++ +++.+.. ...+++|++|+++++. ++.++.
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L-----~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKL-----FLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSS-- 107 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT---TGGGCTTCCEE-----ECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGG--
T ss_pred hcCcccEEEccCC-CcccCh---hHhcCCCCCEE-----EccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChh--
Confidence 6889999999987 455552 26778888777 45544 3333332 3568899999999884 444331
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|+++++ ++..+ .....+++|++|++++|. ++.+
T Consensus 108 -----------------------------l~~l~~L~~L~L~~n-~i~~~-----~~l~~l~~L~~L~l~~n~-l~~~-- 149 (291)
T 1h6t_A 108 -----------------------------LKDLKKLKSLSLEHN-GISDI-----NGLVHLPQLESLYLGNNK-ITDI-- 149 (291)
T ss_dssp -----------------------------GTTCTTCCEEECTTS-CCCCC-----GGGGGCTTCCEEECCSSC-CCCC--
T ss_pred -----------------------------hccCCCCCEEECCCC-cCCCC-----hhhcCCCCCCEEEccCCc-CCcc--
Confidence 122889999999998 45443 123458999999999874 4443
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++++| +++++.. ...+++|+.|+++++. +.++.. ...+++|+.|++.+.
T Consensus 150 ~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~---------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---------GTTCTTCSEEEEEEE
T ss_pred hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCChh---------hccCCCCCEEECcCC
Confidence 23567899999999987 4555432 6788999999999983 554411 124677777776553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=93.89 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=114.1
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|+.|++++| .+..+. .++.+++|+.| +|+++ .++.+.. ...+++|+.|++++|. ++.++.
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L-----~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~-- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKL-----FLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSS-- 104 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT---TGGGCTTCCEE-----ECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTT--
T ss_pred cCCCCCEEECcCC-CCCCCh---HHccCCCCCEE-----EeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChh--
Confidence 6888999999887 355543 26788888777 45554 2333332 3568899999999883 443321
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|+++++. +..+ .....+++|+.|++++|. +..+ +
T Consensus 105 -----------------------------l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~-l~~l-~ 147 (605)
T 1m9s_A 105 -----------------------------LKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNK-ITDI-T 147 (605)
T ss_dssp -----------------------------STTCTTCCEEECTTSC-CCCC-----GGGGGCTTCSEEECCSSC-CCCC-G
T ss_pred -----------------------------hccCCCCCEEEecCCC-CCCC-----ccccCCCccCEEECCCCc-cCCc-h
Confidence 1228899999999983 4433 124468999999999974 4443 2
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
....+++|+.|++++| .+..+.. +..+++|+.|++++|. +.++. ....+++|+.|++.++
T Consensus 148 -~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 148 -VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -GGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEECCSE
T ss_pred -hhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCCC-CCCCh---------HHccCCCCCEEEccCC
Confidence 3567899999999987 4555422 6789999999999993 55441 1124678888887765
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-09 Score=82.23 Aligned_cols=91 Identities=8% Similarity=0.027 Sum_probs=65.9
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCccc----CcCCcEEEeeCCcCCcccCChhHH
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVS----FRNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~----~~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.+|++|++++|. ++.... .....+++|++|++++|..+++..-..... .++|++|++++|.++++.....+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred ceEeEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 369999999996 443222 223468899999999998877643221222 35799999999999988755444
Q ss_pred hhccCCcEEEEecCCCcceE
Q 038160 221 KTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~ 240 (270)
..+++|+.|++++|+.+.+.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCEEECCCCCCCCch
Confidence 46899999999999988764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-08 Score=80.85 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++ +++.+. ....+++|++|+++++. ++.+. ....+++|++|+++++ +++++ .....++
T Consensus 106 ~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~ 172 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-----SLIHLKNLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGN-EITNT---GGLTRLK 172 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-----GGTTCTTCCEEECTTSC-CCBCG--GGGGCTTCCEEECTTS-CCCBC---TTSTTCC
T ss_pred CcccEEEccCC-ccCCCh-----hhcCcccccEEECCCCc-CCCCh--HHccCCCCCEEECCCC-cCcch---HHhccCC
Confidence 45555555555 233220 12235556666665543 33321 1344556666666554 23332 2234555
Q ss_pred CCcEEEEecC
Q 038160 225 RLVKVQVYGC 234 (270)
Q Consensus 225 ~L~~L~i~~c 234 (270)
+|+.|+++++
T Consensus 173 ~L~~L~l~~N 182 (263)
T 1xeu_A 173 KVNWIDLTGQ 182 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEeCCCC
Confidence 6666666654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-07 Score=87.89 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=45.7
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+|++|++++++++. +|.. .+++|++|+++++ .++.++ +.+++|++| ++++. +++.++.
T Consensus 60 ~L~~L~Ls~n~L~~------lp~~---l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L-----~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------LPDN---LPPQITVLEITQN-ALISLP-----ELPASLEYL-----DACDN-RLSTLPE- 117 (571)
T ss_dssp TCSEEECCSSCCSC------CCSC---CCTTCSEEECCSS-CCSCCC-----CCCTTCCEE-----ECCSS-CCSCCCC-
T ss_pred CccEEEeCCCCCCc------cCHh---HcCCCCEEECcCC-CCcccc-----cccCCCCEE-----EccCC-CCCCcch-
Confidence 67888888877765 4444 3577888888876 455543 345666666 44443 3333222
Q ss_pred ccccCCCcccEEEeccCCCceeec
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
. ..+|++|+++++ +++.+|
T Consensus 118 l----~~~L~~L~Ls~N-~l~~lp 136 (571)
T 3cvr_A 118 L----PASLKHLDVDNN-QLTMLP 136 (571)
T ss_dssp C----CTTCCEEECCSS-CCSCCC
T ss_pred h----hcCCCEEECCCC-cCCCCC
Confidence 0 117777887776 354444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-08 Score=83.37 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+ | ++. .+++|++|+++++ .++++++ ++.+++|++|+ +++. +++.+.
T Consensus 40 l~~L~~L~l~~n~i~~l------~-~l~-~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~-----L~~N-~l~~l~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL------A-GMQ-FFTNLKELHLSHN-QISDLSP---LKDLTKLEELS-----VNRN-RLKNLN 101 (263)
T ss_dssp HTTCSEEECTTSCCCCC------T-TGG-GCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEE-----CCSS-CCSCCT
T ss_pred cCcCcEEECcCCCcccc------h-HHh-hCCCCCEEECCCC-ccCCChh---hccCCCCCEEE-----CCCC-ccCCcC
Confidence 46677777777666542 2 222 6677777777765 4554433 55666666653 3333 222222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
.. .. ++|++|++++| .++.++. ...+++|+.|+++++ +++.+.
T Consensus 102 ~~---~~-~~L~~L~L~~N-~l~~~~~-------------------------------l~~l~~L~~L~Ls~N-~i~~~~ 144 (263)
T 1xeu_A 102 GI---PS-ACLSRLFLDNN-ELRDTDS-------------------------------LIHLKNLEILSIRNN-KLKSIV 144 (263)
T ss_dssp TC---CC-SSCCEEECCSS-CCSBSGG-------------------------------GTTCTTCCEEECTTS-CCCBCG
T ss_pred cc---cc-CcccEEEccCC-ccCCChh-------------------------------hcCcccccEEECCCC-cCCCCh
Confidence 11 11 66777777776 3333220 123889999999998 355431
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
....+++|++|+++++. ++.. .....+++|+.|++++++
T Consensus 145 -----~l~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 145 -----MLGFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -----GGGGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEE
T ss_pred -----HHccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCc
Confidence 24458999999999874 4443 235678999999999864
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-07 Score=83.01 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=131.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
..+|+.|++.++.+..+ +.. .++.|+.+.+.+... ...+. ...+++|+.++ +++..--....
T Consensus 327 ~~~L~~L~l~~~~~~~~------~~~---~l~~L~~l~l~~n~~-~~~~~---~~~l~~L~~L~-----ls~n~l~~~~~ 388 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQF------PTL---KLKSLKRLTFTSNKG-GNAFS---EVDLPSLEFLD-----LSRNGLSFKGC 388 (635)
T ss_dssp CCCCSEEEEESCEESSC------CCC---BCTTCCEEEEESCCS-CCBCC---CCBCTTCCEEE-----CCSSCCBEEEE
T ss_pred chhhhhhhcccccccCc------Ccc---cchhhhhcccccccC-CCCcc---cccccccccch-----hhccccccccc
Confidence 46788999988766543 222 688999999987643 22222 34677877773 44332111111
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.........+|+.+++..+.... .+... .+.++............. .......+++++.++++.+. +..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~-------~~~~~~~l~~l~~l~ls~n~-l~~ 459 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS-------EFSVFLSLRNLIYLDISHTH-TRV 459 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT-------SSCTTTTCTTCCEEECTTSC-CEE
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc-------cccccccccccccccccccc-ccc
Confidence 11122356788999888775332 22110 111111111000000000 00111237788888887763 333
Q ss_pred cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 161 LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
+.. .....+++|++|+++++.....+.+.....+++|++|++++| +++.+. +..+..+++|+.|+++++. +..+
T Consensus 460 ~~~---~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l 533 (635)
T 4g8a_A 460 AFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLSSLQVLNMSHNN-FFSL 533 (635)
T ss_dssp CCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSC-CCBC
T ss_pred ccc---cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcC-hHHHcCCCCCCEEECCCCc-CCCC
Confidence 222 223457899999999998787777776788999999999988 576654 3456789999999999983 5544
Q ss_pred eeccCCCCccceeecCccCeeecCCC
Q 038160 241 VINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 241 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.. .....+++|++|++.+.
T Consensus 534 ~~-------~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 534 DT-------FPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CC-------GGGTTCTTCCEEECTTS
T ss_pred Ch-------hHHhCCCCCCEEECCCC
Confidence 21 11224688898888764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=72.17 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=89.8
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.. ..+.+++|+++++ .++.+.+...++.+++|++| ++++. +++.+....
T Consensus 14 ~~l~~s~n~l~~------iP~~---~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L-----~L~~N-~i~~i~~~~- 76 (220)
T 2v70_A 14 TTVDCSNQKLNK------IPEH---IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKI-----NFSNN-KITDIEEGA- 76 (220)
T ss_dssp TEEECCSSCCSS------CCSC---CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEE-----ECCSS-CCCEECTTT-
T ss_pred CEeEeCCCCccc------CccC---CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEE-----ECCCC-cCCEECHHH-
Confidence 466677766665 4443 3456788888875 56666555556777777776 44443 345544322
Q ss_pred ccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccc
Q 038160 87 TSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDS 166 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~ 166 (270)
...+++|++|+++++. ++.++.. ....+++|+.|+++++ ++..+..
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~~~~--- 122 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQHK-----------------------------MFKGLESLKTLMLRSN-RITCVGN--- 122 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCGG-----------------------------GGTTCSSCCEEECTTS-CCCCBCT---
T ss_pred hCCCCCCCEEECCCCc-cCccCHh-----------------------------HhcCCcCCCEEECCCC-cCCeECH---
Confidence 2457778888888773 4433310 0122677888888776 3433322
Q ss_pred cccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 167 KLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 167 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.....+++|++|+++++ .++.+.+.....+++|++|++.+.+
T Consensus 123 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 12334677888888775 3555545445667778888777654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-09 Score=95.03 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred ccccceEEEecCcchhhh-----cCCCcccCcCCcEEEeeCCcCCcccC---ChhHHhhccCCcEEEEecCCCcceEeec
Q 038160 172 FQYLEILGVYHSQSLLIL-----LPSSSVSFRNLAKLVAFGCKELIHLV---TSSTAKTLVRLVKVQVYGCRAMTEVVIN 243 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~---~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 243 (270)
+++|++|++++|. +.+. .+.....+++|++|++++| ++.+.. .......+++|++|+++++. +.+....
T Consensus 226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH
T ss_pred CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH
Confidence 4666666666653 2221 1111123566777777766 444321 11223446677777777763 3221000
Q ss_pred cCCCCccc-eeecCccCeeecCCCC
Q 038160 244 DKDGVEKE-EIVFCKLKTLQLFDLD 267 (270)
Q Consensus 244 ~~~~~~~~-~~~~~~L~~L~l~~~~ 267 (270)
. .... ....++|++|++.+|.
T Consensus 303 ~---l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 L---LCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp H---HHHHHTSTTCCCCEEECTTSC
T ss_pred H---HHHHhccCCccceeeEcCCCC
Confidence 0 0000 0012588888888774
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=73.68 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=89.9
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
..++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.... ...+++|++|+++++. ++.++..
T Consensus 26 ~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~- 94 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSL-PNGVFDELTSLTQL-----YLGGN-KLQSLPNGV-FNKLTSLTYLNLSTNQ-LQSLPNG- 94 (208)
T ss_dssp CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEE-----ECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT-
T ss_pred CCCCCcEEEcCCC-ccCcC-ChhhhcccccCcEE-----ECCCC-ccCccChhh-cCCCCCcCEEECCCCc-CCccCHh-
Confidence 4568888888886 45554 33345677777776 45443 344433321 2357888888888873 4443310
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
....+++|+.|+++++ ++..+.. .....+++|++|+++++. ++.+.+
T Consensus 95 ----------------------------~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~-l~~~~~ 141 (208)
T 2o6s_A 95 ----------------------------VFDKLTQLKELALNTN-QLQSLPD---GVFDKLTQLKDLRLYQNQ-LKSVPD 141 (208)
T ss_dssp ----------------------------TTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ----------------------------HhcCccCCCEEEcCCC-cCcccCH---hHhccCCcCCEEECCCCc-cceeCH
Confidence 0122778888888876 3443322 123457888888888863 555544
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.....+++|++|++.+++-. ..+++|+.|.++..
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWIN 175 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHH
T ss_pred HHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHH
Confidence 44566788888888876421 23445555555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-07 Score=78.68 Aligned_cols=102 Identities=13% Similarity=-0.043 Sum_probs=70.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCc-EEEeeCCcCCcccCChhHHhh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLA-KLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~-~L~i~~c~~l~~l~~~~~~~~ 222 (270)
+++|+++++.+. +++.+.. .+...+++|+++++.+ +++.+....+..+++|+ ++.+.+ +++.+. ...+..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~---~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD---FTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIE-FGAFMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT---TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEEC-TTTTTT
T ss_pred cCCCeEEECCCC-CcceecH---hhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEc-hhhhhC
Confidence 778999999876 3555432 2345678999999986 37777666667888999 999987 676653 356678
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeee
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQ 262 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 262 (270)
|++|+.+++.+. ++..+.. .....+++|+++.
T Consensus 296 c~~L~~l~l~~n-~i~~I~~-------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGD-KITTLGD-------ELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSS-CCCEECT-------TTTCTTCCCCEEE
T ss_pred CccCCEEEeCCC-ccCccch-------hhhcCCcchhhhc
Confidence 999999998665 4666621 1112456777664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-09 Score=96.85 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=43.4
Q ss_pred CCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhcCCCc-----ccCcCCcEEEeeCCcCCccc---C
Q 038160 145 AMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILLPSSS-----VSFRNLAKLVAFGCKELIHL---V 215 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l---~ 215 (270)
++|++|++++|. +....... ......+++|++|+++++. +.+..+... ...++|++|++++| ++.+. .
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 466666666663 22110000 0011234677777777763 333211100 11467777777776 34421 1
Q ss_pred ChhHHhhccCCcEEEEecCC
Q 038160 216 TSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 216 ~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+.....+++|++|++++|+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHhCCCccEEECCCCC
Confidence 12234556777777777773
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=86.63 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=109.9
Q ss_pred CCCCccEEEEeccccceecccccccCcc------cCcCCCccEEEEecCcCccccC---CchhhccccccceeEeeeEEe
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAV------FPHFQSLTRLVVWYCDKLKYIF---SASMIGNLKQLQHLELTTLRL 72 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~------~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~L~~L~L 72 (270)
.+++|++|+|+++.+..+... +|.++ +..+++|++|+++++. +.... .+..++.+++|++| ++
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~--~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L-----~L 129 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDE--IPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHL-----YL 129 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGG--SHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEE-----EC
T ss_pred hCCCccEEeCcccccCccccc--hhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEE-----EC
Confidence 478999999988555443221 33332 0168999999998873 44310 12235677887777 45
Q ss_pred ccCCCcceecCCc---cccCC---------CcccEEEeccCCCce--eecc---c--ccccccCCCCCCCCCCCCCCCcc
Q 038160 73 QGLPKLRCLYPGM---HTSEW---------PALEILSVHRCDKLK--IFTE---D--LSQNNENDQLGIPAQQPPLPLEK 133 (270)
Q Consensus 73 ~~~~~L~~~~~~~---~~~~~---------~~L~~L~i~~c~~l~--~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~ 133 (270)
+++. ++...... ....+ ++|++|++++|. ++ .++. . ..+.++.+...--.+ .....
T Consensus 130 ~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~g~ 204 (386)
T 2ca6_A 130 HNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGI---RPEGI 204 (386)
T ss_dssp CSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCC---CHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCC---CHhHH
Confidence 5542 21110000 00011 677777777764 22 1110 0 011222211100000 00000
Q ss_pred ccccccCcCCCCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhh----cCCCc--ccCcCCcEEEee
Q 038160 134 EGCLEKHLGKLAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLIL----LPSSS--VSFRNLAKLVAF 206 (270)
Q Consensus 134 ~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~----~~~~~--~~~~~L~~L~i~ 206 (270)
..-.......+++|+.|+++++. +....... ......+++|++|++++|. +... .+... ..+++|++|+++
T Consensus 205 ~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 205 EHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECc
Confidence 00000012237899999999884 42100000 0113357889999999886 3221 01112 237899999999
Q ss_pred CCcCCcc----cCChhHHhhccCCcEEEEecCC
Q 038160 207 GCKELIH----LVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 207 ~c~~l~~----l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+|. +.. .+...+..++++|+.|++++|+
T Consensus 283 ~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 283 YNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 874 444 1222333668999999999985
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-08 Score=77.33 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=64.6
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHh---hccCCcEEEEecCCCcceEeeccCCCCc
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAK---TLVRLVKVQVYGCRAMTEVVINDKDGVE 249 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 249 (270)
.+|++|++++|. +++........+++|++|++++|.++++-....+.. .+++|+.|++++|+++++.....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 468999999987 655433334578899999999999888865444433 24579999999998887653211
Q ss_pred cceeecCccCeeecCCCCCCC
Q 038160 250 KEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 250 ~~~~~~~~L~~L~l~~~~~L~ 270 (270)
...+++|++|++.+||++|
T Consensus 135 --L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 --LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp --GGGCTTCCEEEEESCTTCC
T ss_pred --HhcCCCCCEEECCCCCCCC
Confidence 1247899999999998875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=69.90 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+ |...+..+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.
T Consensus 27 ~~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL------PNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYL-----NLSTN-QLQSLP 92 (208)
T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCcEEEcCCCccCcC------ChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEE-----ECCCC-cCCccC
Confidence 34566777766666542 2222225667777777664 44444 22334556666555 34333 233322
Q ss_pred CCccccCCCcccEEEeccC
Q 038160 83 PGMHTSEWPALEILSVHRC 101 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c 101 (270)
... ...+++|++|+++++
T Consensus 93 ~~~-~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 93 NGV-FDKLTQLKELALNTN 110 (208)
T ss_dssp TTT-TTTCTTCCEEECCSS
T ss_pred HhH-hcCccCCCEEEcCCC
Confidence 211 134566777776665
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.7e-08 Score=73.92 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=65.5
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++.++. ++.+ .....+++|++|++++|. +....+.....+++|++|+++++ +++.+.....+..+
T Consensus 48 l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 48 FVNLEFLSLINVG-LISV-----SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp GGGCCEEEEESSC-CCCC-----SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred CCCCCEEeCcCCC-CCCh-----hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 6778888888774 5443 123457788888888765 33322332344788888888876 45554322445677
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++++ +.++... .......+|+|++|++.+++
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~----~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 120 ECLKSLDLFNCE-VTNLNDY----RESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCCCEEECCSSG-GGTSTTH----HHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEEeeCCc-CcchHHH----HHHHHHhCccCcEecCCCCC
Confidence 888888888874 3322100 00011246778888777664
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=70.70 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred ccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKL 104 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 104 (270)
+|.+ ..++|++|+++++ .+..+.+ ..++++++|++| ++++.. ++.+... ....+++|+.|+++++ ++
T Consensus 34 ip~~---~~~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L-----~L~~N~-l~~i~~~-~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 34 VPAG---IPTNAQILYLHDN-QITKLEP-GVFDSLINLKEL-----YLGSNQ-LGALPVG-VFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp CCSC---CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEE-----ECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-CC
T ss_pred cCCC---CCCCCCEEEcCCC-ccCccCH-HHhhCccCCcEE-----ECCCCC-CCCcChh-hcccCCCcCEEECCCC-cC
Confidence 4554 4588999999886 4555533 336677777777 444432 3333322 1235788888888887 45
Q ss_pred eeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCc
Q 038160 105 KIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 184 (270)
+.++.. ....+++|+.|+++++ ++..+.. ....+++|++|+++++
T Consensus 101 ~~l~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~L~~N- 145 (229)
T 3e6j_A 101 TVLPSA-----------------------------VFDRLVHLKELFMCCN-KLTELPR----GIERLTHLTHLALDQN- 145 (229)
T ss_dssp CCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCSCCT----TGGGCTTCSEEECCSS-
T ss_pred CccChh-----------------------------HhCcchhhCeEeccCC-cccccCc----ccccCCCCCEEECCCC-
Confidence 544411 0122778888888887 4554321 2345788888888875
Q ss_pred chhhhcCCCcccCcCCcEEEeeCCc
Q 038160 185 SLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 185 ~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.++.+.+.....+++|++|++.+.+
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4555554445668888888888765
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=69.96 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred EEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccc
Q 038160 8 ALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHT 87 (270)
Q Consensus 8 ~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~ 87 (270)
.++.++++++. +|.. -.++|++|++.++ .++.+++ ..++.+++|+.| ++++. +++.+.+.. .
T Consensus 15 ~v~c~~~~l~~------iP~~---l~~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L-----~Ls~N-~i~~~~~~~-~ 76 (220)
T 2v9t_B 15 IVDCRGKGLTE------IPTN---LPETITEIRLEQN-TIKVIPP-GAFSPYKKLRRI-----DLSNN-QISELAPDA-F 76 (220)
T ss_dssp EEECTTSCCSS------CCSS---CCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEE-----ECCSS-CCCEECTTT-T
T ss_pred EEEcCCCCcCc------CCCc---cCcCCCEEECCCC-cCCCcCH-hHhhCCCCCCEE-----ECCCC-cCCCcCHHH-h
Confidence 44555555554 4443 3467888888775 4655533 335667777666 44443 344443322 2
Q ss_pred cCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccccccc
Q 038160 88 SEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSK 167 (270)
Q Consensus 88 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~ 167 (270)
..+++|++|+++++ .++.++.. ....+++|+.|+++++ ++..+.. .
T Consensus 77 ~~l~~L~~L~Ls~N-~l~~l~~~-----------------------------~f~~l~~L~~L~L~~N-~l~~~~~---~ 122 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN-KITELPKS-----------------------------LFEGLFSLQLLLLNAN-KINCLRV---D 122 (220)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred hCCcCCCEEECCCC-cCCccCHh-----------------------------HccCCCCCCEEECCCC-CCCEeCH---H
Confidence 35677888888777 34444411 0122677888888776 3443322 1
Q ss_pred ccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 168 LGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 168 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
....+++|++|+++++. ++.+.+.....+++|++|++.+.+
T Consensus 123 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 23346778888887753 555444445567778888887654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=70.90 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=73.8
Q ss_pred cCCCccEEEEecCcCcc--ccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCcee-ec
Q 038160 32 HFQSLTRLVVWYCDKLK--YIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKI-FT 108 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~ 108 (270)
..++|++|++++|. +. .++.. ++.+++|+.| +++++. ++.+ .....+++|++|++++|. ++. ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~--~~~l~~L~~L-----~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGL--TAEFVNLEFL-----SLINVG-LISV---SNLPKLPKLKKLELSENR-IFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSC--CGGGGGCCEE-----EEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred CcccCCEEECCCCC-CChhhHHHH--HHhCCCCCEE-----eCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchHHH
Confidence 45677777777764 43 33222 4566666655 444443 3333 222456777777777774 322 22
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhh
Q 038160 109 EDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLI 188 (270)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 188 (270)
. ....+++|+.|+++++ +++.+.. ......+++|++|++++++ +..
T Consensus 89 ~------------------------------~~~~l~~L~~L~Ls~N-~l~~~~~--~~~l~~l~~L~~L~l~~N~-l~~ 134 (168)
T 2ell_A 89 M------------------------------LAEKLPNLTHLNLSGN-KLKDIST--LEPLKKLECLKSLDLFNCE-VTN 134 (168)
T ss_dssp H------------------------------HHHHCTTCCEEECBSS-SCCSSGG--GGGGSSCSCCCEEECCSSG-GGT
T ss_pred H------------------------------HHhhCCCCCEEeccCC-ccCcchh--HHHHhcCCCCCEEEeeCCc-Ccc
Confidence 1 0112667778887777 4443311 0123346788888888764 444
Q ss_pred hcC---CCcccCcCCcEEEeeCCcC
Q 038160 189 LLP---SSSVSFRNLAKLVAFGCKE 210 (270)
Q Consensus 189 ~~~---~~~~~~~~L~~L~i~~c~~ 210 (270)
.++ .....+++|++|++.+|..
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTS
T ss_pred hHHHHHHHHHhCccCcEecCCCCCh
Confidence 333 1355688888888888753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-07 Score=82.19 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=99.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++. +| + .+++|++|+++++ .++.++. +++ +|++| ++++. +++.++
T Consensus 79 ~~~L~~L~Ls~N~l~~------ip-~---~l~~L~~L~Ls~N-~l~~ip~---l~~--~L~~L-----~Ls~N-~l~~lp 136 (571)
T 3cvr_A 79 PPQITVLEITQNALIS------LP-E---LPASLEYLDACDN-RLSTLPE---LPA--SLKHL-----DVDNN-QLTMLP 136 (571)
T ss_dssp CTTCSEEECCSSCCSC------CC-C---CCTTCCEEECCSS-CCSCCCC---CCT--TCCEE-----ECCSS-CCSCCC
T ss_pred cCCCCEEECcCCCCcc------cc-c---ccCCCCEEEccCC-CCCCcch---hhc--CCCEE-----ECCCC-cCCCCC
Confidence 5789999999998875 56 3 6899999999997 5666533 333 66655 56554 344433
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. .+++|+.|+++++. ++.+|. .+++|+.|+++++ ++..+.
T Consensus 137 ~-----~l~~L~~L~Ls~N~-l~~lp~---------------------------------~l~~L~~L~Ls~N-~L~~lp 176 (571)
T 3cvr_A 137 E-----LPALLEYINADNNQ-LTMLPE---------------------------------LPTSLEVLSVRNN-QLTFLP 176 (571)
T ss_dssp C-----CCTTCCEEECCSSC-CSCCCC---------------------------------CCTTCCEEECCSS-CCSCCC
T ss_pred C-----cCccccEEeCCCCc-cCcCCC---------------------------------cCCCcCEEECCCC-CCCCcc
Confidence 2 47899999999884 554541 1567888888777 344321
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCC-------cEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNL-------AKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. . .++|++|+++++ .++.++. .. .+| +.|+++++ +++.+ + ..+..+++|+.|++++++
T Consensus 177 ~-----l--~~~L~~L~Ls~N-~L~~lp~--~~--~~L~~~~~~L~~L~Ls~N-~l~~l-p-~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 177 E-----L--PESLEALDVSTN-LLESLPA--VP--VRNHHSEETEIFFRCREN-RITHI-P-ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C-----C--CTTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSS-CCCCC-C-GGGGGSCTTEEEECCSSS
T ss_pred h-----h--hCCCCEEECcCC-CCCchhh--HH--HhhhcccccceEEecCCC-cceec-C-HHHhcCCCCCEEEeeCCc
Confidence 1 1 167888888876 3444432 11 256 78888765 45543 2 223447888888888875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.5e-09 Score=96.00 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=120.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcC------------ccccCCchhhccccccceeE-eee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDK------------LKYIFSASMIGNLKQLQHLE-LTT 69 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~------------l~~~~~~~~~~~l~~L~~L~-L~~ 69 (270)
.++|+.|+++++.++. +|..+. .+++|+.|+++++.. .... .+..++++++|+.|+ +..
T Consensus 348 ~~~L~~L~Ls~n~L~~------Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 348 DEQLFRCELSVEKSTV------LQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp TTTSSSCCCCHHHHHH------HHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGH
T ss_pred CccceeccCChhhHHh------hHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhh
Confidence 4667777777777765 444455 777888877755431 1111 223355666666653 111
Q ss_pred EEeccCCCcceecCCc---cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCC
Q 038160 70 LRLQGLPKLRCLYPGM---HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAM 146 (270)
Q Consensus 70 L~L~~~~~L~~~~~~~---~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~ 146 (270)
-.+ .+|+...... .......|+.|+++++ +++.+|. ...+++
T Consensus 420 n~~---~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-------------------------------~~~l~~ 464 (567)
T 1dce_A 420 AYL---DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-------------------------------LEQLLL 464 (567)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-------------------------------GGGGTT
T ss_pred ccc---chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-------------------------------cccccc
Confidence 001 1111110000 0011235788888887 4554441 122788
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|+++++ +++.+. .....+++|++|+++++. ++.++ ....+++|++|+++++ +++.+..+..+..+++|
T Consensus 465 L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~Ls~N~-l~~lp--~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 465 VTHLDLSHN-RLRALP----PALAALRCLEVLQASDNA-LENVD--GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CCEEECCSS-CCCCCC----GGGGGCTTCCEEECCSSC-CCCCG--GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred CcEeecCcc-cccccc----hhhhcCCCCCEEECCCCC-CCCCc--ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCC
Confidence 999999988 455442 234568999999999864 55553 3678999999999976 56665424556889999
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeec
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQL 263 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 263 (270)
+.|++++++ +..+.. ........+|+|+.|.+
T Consensus 536 ~~L~L~~N~-l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSG-GGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCc-CCCCcc----HHHHHHHHCcccCccCC
Confidence 999999985 433311 11111124789988853
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=75.43 Aligned_cols=173 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhc-cccccceeEeeeEEeccCCCcceecCCc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIG-NLKQLQHLELTTLRLQGLPKLRCLYPGM 85 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~L~~L~L~~~~~L~~~~~~~ 85 (270)
+++++.+++++. +|.. ..++++.|+++++ .++.+.+. .+. ++++|++| +|++. +++.+....
T Consensus 21 ~~l~c~~~~l~~------iP~~---~~~~l~~L~Ls~N-~l~~l~~~-~~~~~l~~L~~L-----~L~~N-~i~~i~~~~ 83 (361)
T 2xot_A 21 NILSCSKQQLPN------VPQS---LPSYTALLDLSHN-NLSRLRAE-WTPTRLTNLHSL-----LLSHN-HLNFISSEA 83 (361)
T ss_dssp TEEECCSSCCSS------CCSS---CCTTCSEEECCSS-CCCEECTT-SSSSCCTTCCEE-----ECCSS-CCCEECTTT
T ss_pred CEEEeCCCCcCc------cCcc---CCCCCCEEECCCC-CCCccChh-hhhhcccccCEE-----ECCCC-cCCccChhh
Confidence 355566666654 4544 3456888888875 56665443 233 67777766 45443 445544322
Q ss_pred cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccccc
Q 038160 86 HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQD 165 (270)
Q Consensus 86 ~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~ 165 (270)
...+++|+.|+++++. ++.++.. ....+++|+.|+++++ ++..+..
T Consensus 84 -~~~l~~L~~L~Ls~N~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~i~~~~~-- 129 (361)
T 2xot_A 84 -FVPVPNLRYLDLSSNH-LHTLDEF-----------------------------LFSDLQALEVLLLYNN-HIVVVDR-- 129 (361)
T ss_dssp -TTTCTTCCEEECCSSC-CCEECTT-----------------------------TTTTCTTCCEEECCSS-CCCEECT--
T ss_pred -ccCCCCCCEEECCCCc-CCcCCHH-----------------------------HhCCCcCCCEEECCCC-cccEECH--
Confidence 2357788888888873 5555411 0122678888888877 3443321
Q ss_pred ccccccccccceEEEecCcchhhhcCCCc---ccCcCCcEEEeeCCcCCcccCChhHHhhccC--CcEEEEecC
Q 038160 166 SKLGPIFQYLEILGVYHSQSLLILLPSSS---VSFRNLAKLVAFGCKELIHLVTSSTAKTLVR--LVKVQVYGC 234 (270)
Q Consensus 166 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~--L~~L~i~~c 234 (270)
.....+++|++|+++++. ++.++.... ..+++|+.|+++++ +++.+ ....+..+++ ++.|++.+.
T Consensus 130 -~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 130 -NAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCC-CHHHHHHSCHHHHTTEECCSS
T ss_pred -HHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCcc-CHHHhhhccHhhcceEEecCC
Confidence 223457888888888753 444433311 45788888888865 45543 2334455555 367777774
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-07 Score=77.74 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=97.6
Q ss_pred CCCccEEEEeccccceecccccccCcccC-cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFP-HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+.+++|+|++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++++++|++| +|++. +++.+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~------~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L-----~Ls~N-~l~~~ 103 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRA------EWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYL-----DLSSN-HLHTL 103 (361)
T ss_dssp CTTCSEEECCSSCCCEECT------TSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEE-----ECCSS-CCCEE
T ss_pred CCCCCEEECCCCCCCccCh------hhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEE-----ECCCC-cCCcC
Confidence 3568999999999987543 2222 6899999999986 5776643 346788888877 55554 35655
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
.... ...+++|+.|+++++. ++.++.. ....+++|+.|+++++ ++..+
T Consensus 104 ~~~~-~~~l~~L~~L~L~~N~-i~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~l 151 (361)
T 2xot_A 104 DEFL-FSDLQALEVLLLYNNH-IVVVDRN-----------------------------AFEDMAQLQKLYLSQN-QISRF 151 (361)
T ss_dssp CTTT-TTTCTTCCEEECCSSC-CCEECTT-----------------------------TTTTCTTCCEEECCSS-CCCSC
T ss_pred CHHH-hCCCcCCCEEECCCCc-ccEECHH-----------------------------HhCCcccCCEEECCCC-cCCee
Confidence 4432 2467899999999984 4444311 0122778888888876 44443
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcC--CcEEEeeCCc
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRN--LAKLVAFGCK 209 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~--L~~L~i~~c~ 209 (270)
....-.....+++|++|+++++. ++.+++.....+++ ++.|++.+.+
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 22110001347788888888753 44433222333444 3667777643
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-08 Score=88.16 Aligned_cols=213 Identities=15% Similarity=0.011 Sum_probs=104.7
Q ss_pred CCccEEEEeccccceecccccccCcccCcCC-CccEEEEecCcCccccCCchhhccc-----cccceeEeeeEEeccCCC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQ-SLTRLVVWYCDKLKYIFSASMIGNL-----KQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~L~~L~L~~~~~ 77 (270)
++|++|+++++.+..+... .+..... .++ +|++|++++| .+....+. .++.+ ++|++| +++++.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~-~l~~~l~-~~~~~L~~L~Ls~N-~l~~~~~~-~l~~~l~~~~~~L~~L-----~Ls~n~- 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTV-ELIQAFA-NTPASVTSLNLSGN-SLGFKNSD-ELVQILAAIPANVTSL-----NLSGNF- 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHH-HHHHHHH-TCCTTCCEEECCSS-CGGGSCHH-HHHHHHHTSCTTCCEE-----ECCSSC-
T ss_pred CCceEEEccCCCCChHHHH-HHHHHHH-hCCCceeEEECcCC-CCCHHHHH-HHHHHHhccCCCccEE-----ECcCCc-
Confidence 4599999999877764210 0001122 577 8999999987 55554332 23333 666666 566653
Q ss_pred cceecCCc---cccCC-CcccEEEeccCCCceeecccc-c-------ccccCCCCCCCCCCCCCCCccccccccCcCCC-
Q 038160 78 LRCLYPGM---HTSEW-PALEILSVHRCDKLKIFTEDL-S-------QNNENDQLGIPAQQPPLPLEKEGCLEKHLGKL- 144 (270)
Q Consensus 78 L~~~~~~~---~~~~~-~~L~~L~i~~c~~l~~~~~~~-~-------~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~- 144 (270)
++...... ....+ ++|++|++++|. ++..+... . ..++.++..--.+ ... ....+.......
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~-~~~~l~~~l~~~~ 166 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDL---GIK-SSDELIQILAAIP 166 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCG---GGS-CHHHHHHHHHTSC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcC---CHH-HHHHHHHHHhcCC
Confidence 33221110 01123 678888888885 44322110 0 1222221100000 000 000000000113
Q ss_pred CCCCEEEecCcccccccccccc-cccccc-cccceEEEecCcchhh-----hcCCCccc-CcCCcEEEeeCCcCCcccCC
Q 038160 145 AMIKELKLYRPYHLKQLCKQDS-KLGPIF-QYLEILGVYHSQSLLI-----LLPSSSVS-FRNLAKLVAFGCKELIHLVT 216 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~-~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~~-~~~L~~L~i~~c~~l~~l~~ 216 (270)
++|++|++++| ++.......- ...... ++|++|++++|. +.. +... ... .++|++|+++++ ++.+...
T Consensus 167 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~l~~~~~ 242 (362)
T 3goz_A 167 ANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYI-FSSIPNHVVSLNLCLN-CLHGPSL 242 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHHSCTTCCEEECCSS-CCCCCCH
T ss_pred ccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHH-HhcCCCCceEEECcCC-CCCcHHH
Confidence 38888888887 3433211000 011123 488889888875 333 2111 222 358899999876 4544322
Q ss_pred h---hHHhhccCCcEEEEecCC
Q 038160 217 S---STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 217 ~---~~~~~l~~L~~L~i~~c~ 235 (270)
. .....+++|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 1 223556888899998884
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=70.12 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=90.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+. |..+. .+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~-----~~~~~-~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L-----~Ls~N-~l~~l~ 104 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLE-----PGVFD-SLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVL-----DLGTN-QLTVLP 104 (229)
T ss_dssp CTTCSEEECCSSCCCCCC-----TTTTT-TCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCCEEEcCCCccCccC-----HHHhh-CccCCcEEECCCC-CCCCc-ChhhcccCCCcCEE-----ECCCC-cCCccC
Confidence 478999999998888742 33333 7999999999997 46665 44446788888877 55554 455444
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|+++++ +++.+|.. ...+++|+.|++++. ++..+.
T Consensus 105 ~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------------------------------~~~l~~L~~L~L~~N-~l~~~~ 151 (229)
T 3e6j_A 105 SAV-FDRLVHLKELFMCCN-KLTELPRG------------------------------IERLTHLTHLALDQN-QLKSIP 151 (229)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCCSCCTT------------------------------GGGCTTCSEEECCSS-CCCCCC
T ss_pred hhH-hCcchhhCeEeccCC-cccccCcc------------------------------cccCCCCCEEECCCC-cCCccC
Confidence 322 246889999999988 45555421 112788999999887 555443
Q ss_pred cccccccccccccceEEEecCc
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~ 184 (270)
. .....+++|++|++.+.+
T Consensus 152 ~---~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 152 H---GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp T---TTTTTCTTCCEEECTTSC
T ss_pred H---HHHhCCCCCCEEEeeCCC
Confidence 2 223457899999988753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-07 Score=69.84 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ +++.+ .....+++|++|+++++. +....+.....+++|++|+++++. ++.+.....+..+
T Consensus 41 l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-----ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-----TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred cCCCcEEECcCC-CCCCc-----hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence 778899999887 45543 123457889999998875 333223324458899999998874 5544322456788
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFD 265 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 265 (270)
++|+.|++++|+ +.++... .......+++|++|++.+
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~----~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDY----RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTH----HHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCc-ccchHHH----HHHHHHHCCCcccccCCC
Confidence 899999999984 4433100 001122578888887753
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-06 Score=67.21 Aligned_cols=132 Identities=15% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+. ...+..+++|++|+++++ .+..+.+ ..++++++|++|+ +++. +++.+..
T Consensus 32 ~~l~~L~l~~n~i~~i~------~~~~~~l~~L~~L~Ls~N-~i~~~~~-~~~~~l~~L~~L~-----Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP------PGAFSPYKKLRRIDLSNN-QISELAP-DAFQGLRSLNSLV-----LYGN-KITELPK 97 (220)
T ss_dssp TTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECCSS-CCCEECT-TTTTTCSSCCEEE-----CCSS-CCCCCCT
T ss_pred cCCCEEECCCCcCCCcC------HhHhhCCCCCCEEECCCC-cCCCcCH-HHhhCCcCCCEEE-----CCCC-cCCccCH
Confidence 57999999999888753 222237999999999987 4666533 3477888888874 5443 3444433
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCK 163 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~ 163 (270)
.. ...+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+..
T Consensus 98 ~~-f~~l~~L~~L~L~~N~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~~~~ 145 (220)
T 2v9t_B 98 SL-FEGLFSLQLLLLNANK-INCLRVD-----------------------------AFQDLHNLNLLSLYDN-KLQTIAK 145 (220)
T ss_dssp TT-TTTCTTCCEEECCSSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCSCCCT
T ss_pred hH-ccCCCCCCEEECCCCC-CCEeCHH-----------------------------HcCCCCCCCEEECCCC-cCCEECH
Confidence 21 2458899999999984 4443310 0122788999999987 3444322
Q ss_pred ccccccccccccceEEEecCc
Q 038160 164 QDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~c~ 184 (270)
.....+++|++|++++.+
T Consensus 146 ---~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 146 ---GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSC
T ss_pred ---HHHhCCCCCCEEEeCCCC
Confidence 123457889999998753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6.3e-07 Score=67.54 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=28.9
Q ss_pred ccccceEEEecCcchhhhc-CCCcccCcCCcEEEeeCCcCCcccCC--hhHHhhccCCcEEEEe
Q 038160 172 FQYLEILGVYHSQSLLILL-PSSSVSFRNLAKLVAFGCKELIHLVT--SSTAKTLVRLVKVQVY 232 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~--~~~~~~l~~L~~L~i~ 232 (270)
+++|++|+++++. ++.+. +.....+++|++|+++++ .+..... ...+..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 4455555555443 22211 122445666677777665 3343322 1245566677766554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=64.90 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=99.3
Q ss_pred cEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccccccccc
Q 038160 37 TRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNE 116 (270)
Q Consensus 37 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~ 116 (270)
+++++++. .++.++.. + ...+++| ++++. +++.+........+++|++|+++++. ++.++..
T Consensus 14 ~~l~~s~n-~l~~iP~~--~--~~~~~~L-----~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~------ 75 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH--I--PQYTAEL-----RLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG------ 75 (220)
T ss_dssp TEEECCSS-CCSSCCSC--C--CTTCSEE-----ECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT------
T ss_pred CEeEeCCC-CcccCccC--C--CCCCCEE-----EcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHH------
Confidence 46666653 45555321 1 2334444 56664 45665443334578999999999884 6555411
Q ss_pred CCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCccc
Q 038160 117 NDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVS 196 (270)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 196 (270)
....+++|+.|+++++ +++.+.. .....+++|++|+++++. ++.+.+.....
T Consensus 76 -----------------------~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 127 (220)
T 2v70_A 76 -----------------------AFEGASGVNEILLTSN-RLENVQH---KMFKGLESLKTLMLRSNR-ITCVGNDSFIG 127 (220)
T ss_dssp -----------------------TTTTCTTCCEEECCSS-CCCCCCG---GGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred -----------------------HhCCCCCCCEEECCCC-ccCccCH---hHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence 1123889999999998 4444322 123458999999999864 55665555678
Q ss_pred CcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 197 FRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 197 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+++|++|+++++ +++.+. +..+..+++|+.|++++.+
T Consensus 128 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTCSEEECTTS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CccCCEEECCCC-cCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 899999999985 555543 3456788999999999864
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-06 Score=66.37 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++ +++.+ .....+++|++|+++++. ++.+++.....+++|++|+++++ ++..+........++
T Consensus 42 ~~L~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-----DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSS-CCCEE-----CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCC-CCCcc-----cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 36666666665 33332 112345666666666643 34443332245666666666654 233332212344566
Q ss_pred CCcEEEEecCC
Q 038160 225 RLVKVQVYGCR 235 (270)
Q Consensus 225 ~L~~L~i~~c~ 235 (270)
+|+.|++++++
T Consensus 114 ~L~~L~l~~N~ 124 (176)
T 1a9n_A 114 SLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSSG
T ss_pred CCCEEEecCCC
Confidence 66666666663
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-06 Score=64.37 Aligned_cols=131 Identities=16% Similarity=0.036 Sum_probs=69.2
Q ss_pred cCCCccEEEEecCcCccccCCchhhcccc-ccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLK-QLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTED 110 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~ 110 (270)
..++|++|+++++ .++.+ +. +..+. +|++| ++++. .++.+ .....+++|++|+++++. ++.++..
T Consensus 17 ~~~~L~~L~l~~n-~l~~i-~~--~~~~~~~L~~L-----~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI-EN--LGATLDQFDAI-----DFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEG 82 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC-CC--GGGGTTCCSEE-----ECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECSC
T ss_pred CcCCceEEEeeCC-CCchh-HH--hhhcCCCCCEE-----ECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCcc
Confidence 5666777777765 44444 21 23333 55555 44443 33433 122456777777777763 4444410
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 111 LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
....+++|+.|+++++ ++..+.. -.....+++|++|++++++- ..++
T Consensus 83 -----------------------------~~~~l~~L~~L~L~~N-~i~~~~~--~~~l~~l~~L~~L~l~~N~i-~~~~ 129 (176)
T 1a9n_A 83 -----------------------------LDQALPDLTELILTNN-SLVELGD--LDPLASLKSLTYLCILRNPV-TNKK 129 (176)
T ss_dssp -----------------------------HHHHCTTCCEEECCSC-CCCCGGG--GGGGGGCTTCCEEECCSSGG-GGST
T ss_pred -----------------------------hhhcCCCCCEEECCCC-cCCcchh--hHhhhcCCCCCEEEecCCCC-CCcH
Confidence 0012667777777776 3333211 01123467788888877653 2322
Q ss_pred CC---CcccCcCCcEEEeeCCc
Q 038160 191 PS---SSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 191 ~~---~~~~~~~L~~L~i~~c~ 209 (270)
.. ....+++|+.|++.++.
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECC
T ss_pred hHHHHHHHHCCccceeCCCcCC
Confidence 11 24567888888887664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=66.41 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=48.7
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCc-EEEEecCCCcceE
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLV-KVQVYGCRAMTEV 240 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~ 240 (270)
+++|+++++.++. ++.++...+..+++|++|++.+ +++.+ ....+..+++|+ .+.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEE
Confidence 6889999998743 6666655567889999999986 47665 445678899999 999988 56666
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.05 E-value=3.4e-05 Score=60.67 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.. ..++|++|+++++ .++.+.+...++.+++|++| ++++. +++.+.+..
T Consensus 11 ~~l~~s~~~l~~------ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L-----~Ls~N-~l~~~~~~~- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKE------IPRD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKL-----ELKRN-QLTGIEPNA- 73 (192)
T ss_dssp TEEECTTSCCSS------CCSC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEE-----ECCSS-CCCCBCTTT-
T ss_pred CEEEcCCCCcCc------CccC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEE-----ECCCC-CCCCcCHhH-
Confidence 566777766655 4554 3347888888876 56665444345666666666 33332 233332211
Q ss_pred ccCCCcccEEEeccC
Q 038160 87 TSEWPALEILSVHRC 101 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c 101 (270)
...+++|++|+++++
T Consensus 74 ~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 74 FEGASHIQELQLGEN 88 (192)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred cCCcccCCEEECCCC
Confidence 124556666666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=72.57 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred CccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccccccc
Q 038160 35 SLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQN 114 (270)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~ 114 (270)
.|++|+++++ .++.+ |. ++.+++|+.| ++++. +++.++. ....+++|+.|+++++ .++.+|.
T Consensus 442 ~L~~L~Ls~n-~l~~l-p~--~~~l~~L~~L-----~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N-~l~~lp~----- 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL-CH--LEQLLLVTHL-----DLSHN-RLRALPP--ALAALRCLEVLQASDN-ALENVDG----- 503 (567)
T ss_dssp TCSEEECTTS-CCSSC-CC--GGGGTTCCEE-----ECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCGG-----
T ss_pred CceEEEecCC-CCCCC-cC--ccccccCcEe-----ecCcc-cccccch--hhhcCCCCCEEECCCC-CCCCCcc-----
Confidence 4666666665 45554 22 5666666655 33332 2332221 1235666777777666 2433330
Q ss_pred ccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC--
Q 038160 115 NENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-- 192 (270)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-- 192 (270)
...+++|+.|+++++ ++..+.. +.....+++|+.|++++++ ++..++.
T Consensus 504 --------------------------l~~l~~L~~L~Ls~N-~l~~~~~--p~~l~~l~~L~~L~L~~N~-l~~~~~~~~ 553 (567)
T 1dce_A 504 --------------------------VANLPRLQELLLCNN-RLQQSAA--IQPLVSCPRLVLLNLQGNS-LCQEEGIQE 553 (567)
T ss_dssp --------------------------GTTCSSCCEEECCSS-CCCSSST--TGGGGGCTTCCEEECTTSG-GGGSSSCTT
T ss_pred --------------------------cCCCCCCcEEECCCC-CCCCCCC--cHHHhcCCCCCEEEecCCc-CCCCccHHH
Confidence 112667777777766 3433310 1123446777777777754 4443332
Q ss_pred -CcccCcCCcEEE
Q 038160 193 -SSVSFRNLAKLV 204 (270)
Q Consensus 193 -~~~~~~~L~~L~ 204 (270)
....+|+|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 122367777764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.97 E-value=6e-05 Score=58.23 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=19.5
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+++|++|+++++ .++.+++.....+++|++|++.+++
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 455555555554 2333333323456677777776654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.4e-05 Score=58.07 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+ |...+..+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+..
T Consensus 28 ~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTIL-----YLHEN-KLQSLPN 93 (177)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCCT
T ss_pred CCCcEEEeCCCcccEe------CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEE-----ECCCC-CccccCH
Confidence 4566666666555432 2222124566666666554 34443 22223455555555 33332 2332222
Q ss_pred CccccCCCcccEEEeccC
Q 038160 84 GMHTSEWPALEILSVHRC 101 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c 101 (270)
.. ...+++|++|+++++
T Consensus 94 ~~-~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 94 GV-FDKLTQLKELALDTN 110 (177)
T ss_dssp TT-TTTCTTCCEEECCSS
T ss_pred HH-hhCCcccCEEECcCC
Confidence 11 123556666666655
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0001 Score=58.05 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.1
Q ss_pred CCCCCEEEecCc
Q 038160 144 LAMIKELKLYRP 155 (270)
Q Consensus 144 ~~~L~~L~i~~c 155 (270)
+++|+.|++.+.
T Consensus 125 l~~L~~L~L~~N 136 (193)
T 2wfh_A 125 LSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEEeCCC
Confidence 778888887764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=57.58 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=24.4
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+.. ..+..+++|+.|+++++
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC
Confidence 4445555554432 33332332334444555555443 2333221 12233444555555444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=69.23 Aligned_cols=216 Identities=15% Similarity=0.063 Sum_probs=102.0
Q ss_pred CC-CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchh---hccc-cccceeEeeeEEeccCCC
Q 038160 3 LP-NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASM---IGNL-KQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 3 ~~-~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l-~~L~~L~L~~L~L~~~~~ 77 (270)
++ +|++|+++++++...... .+.......+++|++|++++|. +....+... +..+ ++|++| +++++.
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L-----~Ls~N~- 120 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVL-----DLGWND- 120 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEE-----ECCSSC-
T ss_pred CCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEE-----ECcCCc-
Confidence 56 899999999888763110 0111001013899999999984 554433222 2233 566666 555553
Q ss_pred cceecCCcc---ccC-CCcccEEEeccCCCcee-----ecccc--c-ccccCCCCCCCCCCCCCCCccccc--cccCcCC
Q 038160 78 LRCLYPGMH---TSE-WPALEILSVHRCDKLKI-----FTEDL--S-QNNENDQLGIPAQQPPLPLEKEGC--LEKHLGK 143 (270)
Q Consensus 78 L~~~~~~~~---~~~-~~~L~~L~i~~c~~l~~-----~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~c--~e~~~~~ 143 (270)
++....... ... .++|++|++++|. ++. ++... . ..++.++..--.+ .. ..+ +......
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l---~~---~~~~~l~~~l~~ 193 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNL---AS---KNCAELAKFLAS 193 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCG---GG---SCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCC---ch---hhHHHHHHHHHh
Confidence 332221110 011 2478888887773 331 11100 0 1222222100000 00 000 0000111
Q ss_pred C-CCCCEEEecCccccccccccc-cccccc-ccccceEEEecCcchhhhcC----CCcccCcCCcEEEeeCCc--CCccc
Q 038160 144 L-AMIKELKLYRPYHLKQLCKQD-SKLGPI-FQYLEILGVYHSQSLLILLP----SSSVSFRNLAKLVAFGCK--ELIHL 214 (270)
Q Consensus 144 ~-~~L~~L~i~~c~~l~~~~~~~-~~~~~~-l~~L~~L~l~~c~~l~~~~~----~~~~~~~~L~~L~i~~c~--~l~~l 214 (270)
. ++|+.|+++++. +....... ...... .++|++|+++++. +.+... .....+++|++|++++|. .+..-
T Consensus 194 ~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 194 IPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred CCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 3 589999999884 43311100 000111 3589999999874 332211 123457889999999875 12111
Q ss_pred CChh---HHhhccCCcEEEEecCC
Q 038160 215 VTSS---TAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 215 ~~~~---~~~~l~~L~~L~i~~c~ 235 (270)
.... ....+++|+.|++++.+
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhccCCceEEEecCCCc
Confidence 1111 12345567777777664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00025 Score=55.80 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=38.7
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.+ -.++|++|++.++ .++.++ ..++++++|++|+ +++. +++.+....
T Consensus 13 ~~l~~~~~~l~~------ip~~---~~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~-----Ls~N-~i~~i~~~~- 73 (193)
T 2wfh_A 13 TVVRCSNKGLKV------LPKG---IPRDVTELYLDGN-QFTLVP--KELSNYKHLTLID-----LSNN-RISTLSNQS- 73 (193)
T ss_dssp TEEECTTSCCSS------CCSC---CCTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEE-----CCSS-CCCCCCTTT-
T ss_pred CEEEcCCCCCCc------CCCC---CCCCCCEEECCCC-cCchhH--HHhhcccCCCEEE-----CCCC-cCCEeCHhH-
Confidence 355565666654 4443 3467888888775 455443 2356666666553 3332 222222211
Q ss_pred ccCCCcccEEEeccC
Q 038160 87 TSEWPALEILSVHRC 101 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c 101 (270)
...+++|++|+++++
T Consensus 74 f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 74 FSNMTQLLTLILSYN 88 (193)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 123555666665555
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.67 E-value=3.9e-06 Score=66.39 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=43.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCC------
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVT------ 216 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~------ 216 (270)
+++|+.|+++++ ++..+. ....+++|++|+++++. ++.+.. .....+++|++|++.+++- .....
T Consensus 92 ~~~L~~L~L~~N-~l~~l~-----~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~ 163 (198)
T 1ds9_A 92 ADTLEELWISYN-QIASLS-----GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL-YNDYKENNATS 163 (198)
T ss_dssp HHHCSEEEEEEE-ECCCHH-----HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH-HHHHHTTTTHH
T ss_pred CCcCCEEECcCC-cCCcCC-----ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc-ccccccccchH
Confidence 456666766665 333321 12346777777777653 332211 1234577888888887642 22111
Q ss_pred ---hhHHhhccCCcEEE
Q 038160 217 ---SSTAKTLVRLVKVQ 230 (270)
Q Consensus 217 ---~~~~~~l~~L~~L~ 230 (270)
......+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 12356778888876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.6e-05 Score=71.25 Aligned_cols=105 Identities=22% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+|+++.+.. +|..++ .+++|++|+++++ .++.++. .++++++|++| +|++.. ++.++
T Consensus 223 l~~L~~L~Ls~n~l~~------l~~~~~-~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L-----~Ls~N~-l~~lp 286 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN------ISANIF-KYDFLTRLYLNGN-SLTELPA--EIKNLSNLRVL-----DLSHNR-LTSLP 286 (727)
T ss_dssp CCCCCEEECTTSCCSC------CCGGGG-GCCSCSCCBCTTS-CCSCCCG--GGGGGTTCCEE-----ECTTSC-CSSCC
T ss_pred CCCCcEEECCCCCCCC------CChhhc-CCCCCCEEEeeCC-cCcccCh--hhhCCCCCCEE-----eCcCCc-CCccC
Confidence 4556666666655543 333344 5666666666655 3443321 24556665555 333332 33222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPY 156 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~ 156 (270)
.. ...+++|++|+++++ .++.+|.. ...+++|+.|+++++.
T Consensus 287 ~~--~~~l~~L~~L~L~~N-~l~~lp~~------------------------------~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 AE--LGSCFQLKYFYFFDN-MVTTLPWE------------------------------FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SS--GGGGTTCSEEECCSS-CCCCCCSS------------------------------TTSCTTCCCEECTTSC
T ss_pred hh--hcCCCCCCEEECCCC-CCCccChh------------------------------hhcCCCccEEeCCCCc
Confidence 11 234566666666665 34444310 2237889999998874
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00021 Score=62.04 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=30.5
Q ss_pred ccccceEEEecCcchhhhcCC--CcccCcCCcEEEeeCCcCCcccCChhH---HhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILLPS--SSVSFRNLAKLVAFGCKELIHLVTSST---AKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~---~~~l~~L~~L~i~~c 234 (270)
+|+|++|.+++|......... ....+|+|++|+++. +++.+.....+ ...+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 566777777665432211000 012356677777753 34554211111 134566777777666
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.5e-05 Score=71.29 Aligned_cols=59 Identities=19% Similarity=0.028 Sum_probs=39.5
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+++|+.|+++++. +..+. .....+++|++|+++++ .++.++.. +..+++|+.|+++++.
T Consensus 269 l~~L~~L~Ls~N~-l~~lp----~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 269 LSNLRVLDLSHNR-LTSLP----AELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCCEEECTTSC-CSSCC----SSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CCCCCEEeCcCCc-CCccC----hhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCc
Confidence 7788888888873 54432 12345778888888876 35555333 6677888888888764
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0004 Score=53.35 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=27.5
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+++|++|+++++ .++.+++..+..+++|++|++++. +++.+. ...+..+++|+.|++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS
T ss_pred cccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCC
Confidence 455555555553 244443332344555555555543 333321 22334455555555555
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0036 Score=55.00 Aligned_cols=191 Identities=11% Similarity=0.095 Sum_probs=91.1
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+|+++.+.+ +++.| +.+.|..+++|+.+++.+. +++.+.. ..+. ..+|+.+ .+. .+++.+...
T Consensus 158 ~L~~i~lp~-~l~~I------~~~aF~~c~~L~~l~l~~n-~l~~I~~-~aF~-~~~L~~l-----~lp--~~l~~I~~~ 220 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQL------KEDIFYYCYNLKKADLSKT-KITKLPA-STFV-YAGIEEV-----LLP--VTLKEIGSQ 220 (401)
T ss_dssp CCCEEECCT-TCCEE------CSSTTTTCTTCCEEECTTS-CCSEECT-TTTT-TCCCSEE-----ECC--TTCCEECTT
T ss_pred CceEEEeCC-CccEe------hHHHhhCcccCCeeecCCC-cceEech-hhEe-ecccCEE-----EeC--Cchheehhh
Confidence 466666654 44443 2233336788888888653 4555533 2233 3555555 332 234433332
Q ss_pred ccccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCcccccc-ccCcCCCCCCCEEEecCccc----
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCL-EKHLGKLAMIKELKLYRPYH---- 157 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~-e~~~~~~~~L~~L~i~~c~~---- 157 (270)
. ...+++|+.+.+.+ +++.++... ...++.+.. +. .+.. + .+.+..+++|+++.+.+..-
T Consensus 221 a-F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l--p~--~i~~------I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 221 A-FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL--PN--GVTN------IASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE--ET--TCCE------ECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred H-hhCCCCCCEEecCC--CccCccccccccCCccEEEe--CC--CccE------EChhHhhCCCCCCEEEeCCccccCCc
Confidence 2 22455666666654 244333211 000000000 00 0000 0 01122266777777655311
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
...+. ..+...+++|+.+.+.+ .++.+....+..+.+|+++.+.. +++.+. ...+..+ +|+.+.+.+.
T Consensus 288 ~~~I~---~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~-~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 288 EAMIH---PYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN-FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCEEC---TTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC-TTSSSSS-CCCEEEECCS
T ss_pred ccEEC---HHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc-HHhCCCC-CCCEEEEcCC
Confidence 11111 12233467777777763 35555544455677888888853 355543 2344566 7888888775
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=52.94 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=43.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
.++|+.|++++. +++.+.. .....+++|++|+++++ .++.+++..+..+++|++|+++++ +++.+ ....+..+
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEP---GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSI-PRGAFDNL 104 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred CCCCcEEEeCCC-CccccCH---HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-cccee-CHHHhccc
Confidence 345666666665 2333221 11234566666666664 355444433345666666666653 34433 22334556
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
++|+.|++++.
T Consensus 105 ~~L~~L~L~~N 115 (174)
T 2r9u_A 105 KSLTHIYLYNN 115 (174)
T ss_dssp TTCSEEECCSS
T ss_pred cCCCEEEeCCC
Confidence 66666666664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00042 Score=53.22 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=6.2
Q ss_pred cCCCccEEEEecC
Q 038160 32 HFQSLTRLVVWYC 44 (270)
Q Consensus 32 ~l~~L~~L~l~~c 44 (270)
.+++|++|+++++
T Consensus 52 ~l~~L~~L~Ls~N 64 (170)
T 3g39_A 52 RLTQLTRLDLDNN 64 (170)
T ss_dssp TCTTCSEEECCSS
T ss_pred CcccCCEEECCCC
Confidence 4445555555443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00029 Score=54.42 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.1
Q ss_pred cCCCccEEEEecC
Q 038160 32 HFQSLTRLVVWYC 44 (270)
Q Consensus 32 ~l~~L~~L~l~~c 44 (270)
.+++|++|+++++
T Consensus 55 ~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 55 HLVNLQQLYFNSN 67 (174)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC
Confidence 4444555554443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00048 Score=59.76 Aligned_cols=173 Identities=14% Similarity=0.028 Sum_probs=92.0
Q ss_pred CCCCccEEEEeccccc---eeccc-ccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCC
Q 038160 2 ALPNLEALEISAINVD---KIWHY-NQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~---~~~~~-~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
.|++|++|.|.+...+ ..|.. ..++. +.+.+|+|+.|.++++..++ + +. + .+++|++| +|..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~-l-~~--~-~~~~L~~L-----~L~~~~- 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS-I-GK--K-PRPNLKSL-----EIISGG- 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB-C-CS--C-BCTTCSEE-----EEECSB-
T ss_pred hcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce-e-cc--c-cCCCCcEE-----EEecCC-
Confidence 3789999998663221 11221 00111 11278999999999984442 2 22 2 36777766 454432
Q ss_pred cceecCCc-cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcc
Q 038160 78 LRCLYPGM-HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPY 156 (270)
Q Consensus 78 L~~~~~~~-~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~ 156 (270)
+..-.... ....+|+|+.|++..+.+... .. .....+.. ... ...+|+|+.|++.+|.
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~---~~~~~l~~-------~l~----------~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FD---GDMNVFRP-------LFS----------KDRFPNLKWLGIVDAE 263 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CC---SCGGGTGG-------GSC----------TTTCTTCCEEEEESCT
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccc-cc---hhHHHHHH-------HHh----------cCCCCCcCEEeCCCCC
Confidence 22111111 113689999999864432110 00 00111000 000 0128899999999885
Q ss_pred cccccccccccccccccccceEEEecCcchhhhc----CCCcccCcCCcEEEeeCCc
Q 038160 157 HLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL----PSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 157 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~ 209 (270)
--..... .-.....+++|++|+++.+ .+.+.. ......+++|++|++++|.
T Consensus 264 i~~~~~~-~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVE-MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHH-HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CchHHHH-HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3221100 0001135899999999865 354421 2223568999999999773
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.17 E-value=7.5e-05 Score=58.88 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=35.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR 71 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~ 71 (270)
+++|++|++++++++. +| .+. .+++|++|++++| .++.++. .++.+++|++|++..-.
T Consensus 47 l~~L~~L~ls~n~l~~------l~-~~~-~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK------IS-SLS-GMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ 104 (198)
T ss_dssp TTTCSEEECSEEEESC------CC-CHH-HHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE
T ss_pred CCCCCEEECCCCCCcc------cc-ccc-cCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc
Confidence 5677888887776665 33 232 6777888888776 3554432 25566777777644433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.014 Score=51.23 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=32.4
Q ss_pred cccccceEEEecCcc----hhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 171 IFQYLEILGVYHSQS----LLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
.+++|+.+.+.+... ...+....+..+++|+++.+. ++++.+. ...+..|.+|+.+.+... +..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~-~~aF~~c~~L~~l~lp~~--l~~I 337 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILG-QGLLGGNRKVTQLTIPAN--VTQI 337 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEEC-TTTTTTCCSCCEEEECTT--CCEE
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEh-hhhhcCCCCccEEEECcc--ccEE
Confidence 355666666654211 112323334456666666665 2344442 234456677777777432 4444
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=2.9e-05 Score=67.82 Aligned_cols=12 Identities=17% Similarity=0.049 Sum_probs=6.8
Q ss_pred ccCCcEEEEecC
Q 038160 223 LVRLVKVQVYGC 234 (270)
Q Consensus 223 l~~L~~L~i~~c 234 (270)
.++|++|+++++
T Consensus 238 ~~~L~~L~Ls~N 249 (372)
T 3un9_A 238 HPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTS
T ss_pred CCCCCEEeccCC
Confidence 355566665555
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0032 Score=53.76 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
+++|++|+|++ +.++.+.. +.+..+++|++|+++++ .++.+++ ..++++++|++|+ |++. +|+.+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~-----l~~N-~l~~~ 95 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLN-----LSFN-ALESL 95 (347)
T ss_dssp CSCCSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEE-----CCSS-CCSCC
T ss_pred CCCeeEEEccCCCCCCCcCh------hHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEe-----CCCC-cccee
Confidence 46788888886 88876422 22227888888888876 5777644 3367788877774 4332 34443
Q ss_pred cCCccccCCCcccEEEeccCC
Q 038160 82 YPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~ 102 (270)
+... .....|+.|++.+.+
T Consensus 96 ~~~~--~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKT--VQGLSLQELVLSGNP 114 (347)
T ss_dssp CSTT--TCSCCCCEEECCSSC
T ss_pred CHHH--cccCCceEEEeeCCC
Confidence 3322 122238888887764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0045 Score=52.81 Aligned_cols=85 Identities=21% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++..+++.+... ....+++|++|+|+++ .++.+.+..+..+++|++|++++. +|+.+. ...+..+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~ 103 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLS-WKTVQGL 103 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCC-STTTCSC
T ss_pred CCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeC-HHHcccC
Confidence 667888888875566665432 2345788888888886 477766665677888888888864 565543 2233334
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
+ |+.|++.+.+
T Consensus 104 ~-L~~l~l~~N~ 114 (347)
T 2ifg_A 104 S-LQELVLSGNP 114 (347)
T ss_dssp C-CCEEECCSSC
T ss_pred C-ceEEEeeCCC
Confidence 3 8888887753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.57 Score=40.44 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=41.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+|+++.+.+ +++.+.. .+.....+|+.+.+.+ .++.+....+..+.+|+++.+.. +++.+. ...+..|
T Consensus 296 ~~~L~~i~l~~--~i~~I~~---~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~C 365 (394)
T 4fs7_A 296 CSSLTEVKLLD--SVKFIGE---EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG-ANAFQGC 365 (394)
T ss_dssp CTTCCEEEECT--TCCEECT---TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTBTTC
T ss_pred ccccccccccc--ccceech---hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh-HHHhhCC
Confidence 55566555532 2333221 1223356677666642 24444444345567777777653 344442 2345666
Q ss_pred cCCcEEEEec
Q 038160 224 VRLVKVQVYG 233 (270)
Q Consensus 224 ~~L~~L~i~~ 233 (270)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 7777776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.89 Score=39.21 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=37.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
...+|+.+.+.+ .++.+....+..+.+|+++.+.+ +++.+. ...+..|.+|+.+.+..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIG-KRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTTTTCTTCCEECCCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEh-HHhccCCCCCCEEEECc
Confidence 466777777753 35555444455678888888863 455543 34556788888887754
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.0073 Score=52.47 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=65.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC-----CcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-----SSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
.++|++|++++|. +..... ......+++|++|++++|. +.+.... .....++|++|++++|. +.+.....
T Consensus 100 ~~~L~~L~Ls~n~-l~~~~~--~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~ 174 (372)
T 3un9_A 100 RHALDEVNLASCQ-LDPAGL--RTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV 174 (372)
T ss_dssp SSCEEEEECTTCC-CCHHHH--HHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH
T ss_pred CCCceEEEecCCC-CCHHHH--HHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH
Confidence 3678888888883 322111 1122346789999999874 3221111 00235789999999884 54432111
Q ss_pred ---HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 ---TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....++|++|++++|. +.+.... .........++|++|++.++.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~---~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLE---LLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHH---HHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHH---HHHHHHhcCCCcCeEECCCCC
Confidence 23567889999999985 4432110 001111135689999998873
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.079 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=8.1
Q ss_pred CCCccEEEEeccccce
Q 038160 3 LPNLEALEISAINVDK 18 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~ 18 (270)
+|+|++|+|+++++..
T Consensus 169 l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR 184 (267)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 4455555555554444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.32 E-value=0.12 Score=39.89 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=47.8
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhc----CCCcccCcCCcEEEee-CCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILL----PSSSVSFRNLAKLVAF-GCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~~~L~~L~i~-~c~~l~~l~~~ 217 (270)
.++|++|+++++. +..-.... .......++|++|++++|. +.+.. .......++|++|+++ ....+.+-...
T Consensus 64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 5678888888873 32210000 0011124678888888764 22210 1123345678888884 23445443211
Q ss_pred ---hHHhhccCCcEEEEecCC
Q 038160 218 ---STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 218 ---~~~~~l~~L~~L~i~~c~ 235 (270)
......++|++|++++|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 223445778888888773
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=0.72 Score=33.29 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCccEEEEecCcCccccCCchhhcccccccee
Q 038160 34 QSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
++|++|++++. .++.+ +...+..+++|+.|
T Consensus 31 ~~l~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L 60 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTAL-PPGLLDALPALRTA 60 (130)
T ss_dssp TTCSEEECTTS-CCSSC-CTTTGGGCTTCCEE
T ss_pred cCCCEEECCCC-cCCcc-ChhhhhhccccCEE
Confidence 46778887764 45555 34445666666665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=81.51 E-value=0.87 Score=37.37 Aligned_cols=62 Identities=24% Similarity=0.111 Sum_probs=36.7
Q ss_pred cccccceEEEecCcchhhhc--CCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILL--PSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+++|+.|++++.. +..+. +.....+++|+.|++++. +++++........+ +|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc
Confidence 36788888888743 33321 222346888888888753 45544111112223 78888888876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 270 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.47 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.44 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.33 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.28 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.17 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.13 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.11 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.1 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.05 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.05 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.03 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.99 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.89 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.88 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.84 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.65 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.6 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.52 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.31 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.17 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 97.9 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.87 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.82 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.81 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 97.78 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.34 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.22 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.01 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 96.66 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 94.7 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 94.41 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 94.14 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 88.29 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 86.57 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 83.11 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.3e-15 Score=125.53 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=95.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
..+|++|+++++.+.... ++. ++..+++|++|.+++|. +.+.. ...++.+++|++| ++++|..++...
T Consensus 45 ~~~L~~LdLs~~~i~~~~----l~~-l~~~c~~L~~L~L~~~~-l~~~~-~~~l~~~~~L~~L-----~Ls~c~~itd~~ 112 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVST----LHG-ILSQCSKLQNLSLEGLR-LSDPI-VNTLAKNSNLVRL-----NLSGCSGFSEFA 112 (284)
T ss_dssp CBCCCEEECTTCEECHHH----HHH-HHTTBCCCSEEECTTCB-CCHHH-HHHHTTCTTCSEE-----ECTTCBSCCHHH
T ss_pred CCCCCEEECCCCccCHHH----HHH-HHHhCCCcccccccccC-CCcHH-HHHHhcCCCCcCc-----cccccccccccc
Confidence 346677777664443210 111 11256777777777773 33221 1224455655554 677777665432
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccc-cccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYH-LKQL 161 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~-l~~~ 161 (270)
.......+++|++|++++|.+++.-.... ......++|+.|++.+|.. +...
T Consensus 113 l~~l~~~~~~L~~L~ls~c~~~~~~~~~~---------------------------~~~~~~~~L~~L~l~~~~~~i~~~ 165 (284)
T d2astb2 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQV---------------------------AVAHVSETITQLNLSGYRKNLQKS 165 (284)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHH---------------------------HHHHSCTTCCEEECCSCGGGSCHH
T ss_pred cchhhHHHHhccccccccccccccccchh---------------------------hhcccccccchhhhcccccccccc
Confidence 22222346778888888877654211000 0000134566666666532 2211
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.. ......+++|++|++++|..+++........+++|++|++++|.++.+-.... ...+++|+.|++++|
T Consensus 166 ~l--~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 166 DL--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 235 (284)
T ss_dssp HH--HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred cc--cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence 00 01122356666666666666554333334456666666666666665543222 245666666666666
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.1e-14 Score=121.25 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=129.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|.+++..+... .+..+. .+++|++|++++|..+++..-.....++++|++| ++++|.+++.-
T Consensus 69 ~c~~L~~L~L~~~~l~~~-----~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L-----~ls~c~~~~~~ 137 (284)
T d2astb2 69 QCSKLQNLSLEGLRLSDP-----IVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL-----NLSWCFDFTEK 137 (284)
T ss_dssp TBCCCSEEECTTCBCCHH-----HHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE-----ECCCCTTCCHH
T ss_pred hCCCcccccccccCCCcH-----HHHHHh-cCCCCcCccccccccccccccchhhHHHHhcccc-----ccccccccccc
Confidence 478999999999666542 222333 7899999999999988754333345678888777 78899887643
Q ss_pred cCCc-cccCCCcccEEEeccCCC-ceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 82 YPGM-HTSEWPALEILSVHRCDK-LKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 82 ~~~~-~~~~~~~L~~L~i~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
.... ....+++|+.|++++|.. ++.-. +..+...+++|++|++++|..++
T Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~----------------------------l~~l~~~~~~L~~L~L~~~~~it 189 (284)
T d2astb2 138 HVQVAVAHVSETITQLNLSGYRKNLQKSD----------------------------LSTLVRRCPNLVHLDLSDSVMLK 189 (284)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHH----------------------------HHHHHHHCTTCSEEECTTCTTCC
T ss_pred cchhhhcccccccchhhhccccccccccc----------------------------ccccccccccccccccccccCCC
Confidence 2211 112367899999999843 33111 00001128899999999998876
Q ss_pred ccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcce
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTE 239 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 239 (270)
.... .....+++|++|++++|..+++........+|+|++|++.+| +.+-....+...+|+|+. +|.++.+
T Consensus 190 d~~~---~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i----~~~~ls~ 260 (284)
T d2astb2 190 NDCF---QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI----NCSHFTT 260 (284)
T ss_dssp GGGG---GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE----SCCCSCC
T ss_pred chhh---hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc----cCccCCC
Confidence 4322 123457999999999999887654443567899999999998 444444445667777763 6766654
Q ss_pred E
Q 038160 240 V 240 (270)
Q Consensus 240 ~ 240 (270)
+
T Consensus 261 ~ 261 (284)
T d2astb2 261 I 261 (284)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=3.1e-11 Score=100.67 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=115.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccC-----CC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGL-----PK 77 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~-----~~ 77 (270)
.+++++|+|++++++.+ |.+.+..+++|++|+++++. +..+ ++..++++++|++|++..-.+... +.
T Consensus 30 ~~~l~~L~Ls~N~i~~l------~~~~f~~l~~L~~L~l~~n~-~~~i-~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~ 101 (305)
T d1xkua_ 30 PPDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNK-ISKI-SPGAFAPLVKLERLYLSKNQLKELPEKMPKT 101 (305)
T ss_dssp CTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSC-CCCB-CTTTTTTCTTCCEEECCSSCCSBCCSSCCTT
T ss_pred CCCCCEEECcCCcCCCc------ChhHhhcccccccccccccc-cccc-chhhhhCCCccCEecccCCccCcCccchhhh
Confidence 36799999999988874 33333378999999999985 4444 334477888888885322111111 11
Q ss_pred cceecCCcc---------ccCCCcccEEEeccCCCceeec-ccc---cccccCCCCCCCCCCCCCCCccccccccC-cCC
Q 038160 78 LRCLYPGMH---------TSEWPALEILSVHRCDKLKIFT-EDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKH-LGK 143 (270)
Q Consensus 78 L~~~~~~~~---------~~~~~~L~~L~i~~c~~l~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~-~~~ 143 (270)
++.+..... ....+.+..+.+..++...... ... ...++.+...... +..+ ...
T Consensus 102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~------------l~~l~~~~ 169 (305)
T d1xkua_ 102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN------------ITTIPQGL 169 (305)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC------------CCSCCSSC
T ss_pred hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC------------ccccCccc
Confidence 111111000 0012223333333222111000 000 0011110000000 0000 112
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|++.++...... ......++.+++|.++++ .++.+.+.....+++|++|+++++ +++.+. ..+..+
T Consensus 170 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp--~~l~~l 241 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVP--GGLADH 241 (305)
T ss_dssp CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCC--TTTTTC
T ss_pred CCccCEEECCCCcCCCCC----hhHhhccccccccccccc-cccccccccccccccceeeecccc-cccccc--cccccc
Confidence 667778877776433221 112234567777777775 355554555566788888888877 555542 234667
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|+++++ +++.+....- .........+.|+.|.+.+-|
T Consensus 242 ~~L~~L~Ls~N-~i~~i~~~~f-~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 242 KYIQVVYLHNN-NISAIGSNDF-CPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SSCCEEECCSS-CCCCCCTTSS-SCSSCCTTSCCCSEEECCSSS
T ss_pred cCCCEEECCCC-ccCccChhhc-cCcchhcccCCCCEEECCCCc
Confidence 78888888876 3665521000 000111134566777666543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.28 E-value=5.8e-11 Score=101.51 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCc
Q 038160 170 PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVE 249 (270)
Q Consensus 170 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 249 (270)
..++++++|+++++ +++++. . ...+++|++|++++| +++++. .+..+++|++|+++++ ++.++.
T Consensus 304 ~~~~~l~~L~ls~n-~l~~l~-~-l~~l~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~-------- 367 (384)
T d2omza2 304 SNLKNLTYLTLYFN-NISDIS-P-VSSLTKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLT-------- 367 (384)
T ss_dssp GGCTTCSEEECCSS-CCSCCG-G-GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCG--------
T ss_pred chhcccCeEECCCC-CCCCCc-c-cccCCCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCCh--------
Confidence 34788999999886 355542 2 467899999999988 666642 3577899999999988 465552
Q ss_pred cceeecCccCeeecCC
Q 038160 250 KEEIVFCKLKTLQLFD 265 (270)
Q Consensus 250 ~~~~~~~~L~~L~l~~ 265 (270)
+...+++|+.|++.+
T Consensus 368 -~l~~l~~L~~L~L~~ 382 (384)
T d2omza2 368 -PLANLTRITQLGLND 382 (384)
T ss_dssp -GGTTCTTCSEEECCC
T ss_pred -hhccCCCCCEeeCCC
Confidence 122578999998864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=9.2e-11 Score=93.66 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=100.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+.+|++|.+.+++++.+ . ++. .+++|++|+++++ .+..+.+ +..+++++++ ++.++. ++.+.
T Consensus 40 l~~L~~L~l~~~~i~~l-~------~l~-~l~~L~~L~ls~n-~i~~~~~---l~~l~~l~~l-----~~~~n~-~~~i~ 101 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI-E------GVQ-YLNNLIGLELKDN-QITDLAP---LKNLTKITEL-----ELSGNP-LKNVS 101 (227)
T ss_dssp HHTCCEEECTTSCCCCC-T------TGG-GCTTCCEEECCSS-CCCCCGG---GTTCCSCCEE-----ECCSCC-CSCCG
T ss_pred cCCcCEEECCCCCCCcc-h------hHh-cCCCCcEeecCCc-eeecccc---cccccccccc-----cccccc-ccccc
Confidence 34667777776666553 1 122 6777777777765 3443322 4555665555 333321 12111
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
....+++|+.+.+++|......+ ....+.++.+.+.++.-...
T Consensus 102 ---~l~~l~~L~~l~l~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~-- 144 (227)
T d1h6ua2 102 ---AIAGLQSIKTLDLTSTQITDVTP--------------------------------LAGLSNLQVLYLDLNQITNI-- 144 (227)
T ss_dssp ---GGTTCTTCCEEECTTSCCCCCGG--------------------------------GTTCTTCCEEECCSSCCCCC--
T ss_pred ---cccccccccccccccccccccch--------------------------------hccccchhhhhchhhhhchh--
Confidence 11345666666666664221100 01155666666666532111
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEee
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 242 (270)
......++|++|.+++|.-. ... ....+++|++|+++++ +++++. .+..+++|++|++++| +++++..
T Consensus 145 ----~~~~~~~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~Ls~n-~l~~l~---~l~~l~~L~~L~Ls~N-~lt~i~~ 212 (227)
T d1h6ua2 145 ----SPLAGLTNLQYLSIGNAQVS-DLT--PLANLSKLTTLKADDN-KISDIS---PLASLPNLIEVHLKNN-QISDVSP 212 (227)
T ss_dssp ----GGGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECTTS-CCCBCGG
T ss_pred ----hhhccccccccccccccccc-cch--hhcccccceecccCCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCCcc
Confidence 11234667888888776422 211 1356788888888876 566542 2467788888888888 4665521
Q ss_pred ccCCCCccceeecCccCeeecC
Q 038160 243 NDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 243 ~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
...+++|+.|++.
T Consensus 213 ---------l~~l~~L~~L~ls 225 (227)
T d1h6ua2 213 ---------LANTSNLFIVTLT 225 (227)
T ss_dssp ---------GTTCTTCCEEEEE
T ss_pred ---------cccCCCCCEEEee
Confidence 1146777777764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.6e-10 Score=92.37 Aligned_cols=82 Identities=23% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+++.|++.++ ++..+.. .....+++|++++++++ +++.+.+.....+++|++|+++++ +++.+.. .+..+
T Consensus 123 l~~l~~L~l~~n-~l~~l~~---~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~--~~~~~ 194 (266)
T d1p9ag_ 123 LGELQELYLKGN-ELKTLPP---GLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPK--GFFGS 194 (266)
T ss_dssp CTTCCEEECTTS-CCCCCCT---TTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTT
T ss_pred cccccccccccc-ccceecc---ccccccccchhcccccc-cccccCccccccccccceeecccC-CCcccCh--hHCCC
Confidence 566777777665 3333321 12234677777777775 355555554556777888888765 3665422 23456
Q ss_pred cCCcEEEEec
Q 038160 224 VRLVKVQVYG 233 (270)
Q Consensus 224 ~~L~~L~i~~ 233 (270)
++|+.|++++
T Consensus 195 ~~L~~L~L~~ 204 (266)
T d1p9ag_ 195 HLLPFAFLHG 204 (266)
T ss_dssp CCCSEEECCS
T ss_pred CCCCEEEecC
Confidence 7777787776
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=9.9e-10 Score=89.69 Aligned_cols=195 Identities=17% Similarity=0.049 Sum_probs=132.1
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
..+.+.+-++.+++. +|.+ -.+++++|++.+. .++.+ +...+.++++|++| ++++. +++.+..
T Consensus 10 ~~~~~v~C~~~~L~~------iP~~---lp~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L-----~L~~N-~l~~l~~ 72 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA------LPPD---LPKDTTILHLSEN-LLYTF-SLATLMPYTRLTQL-----NLDRA-ELTKLQV 72 (266)
T ss_dssp TTCCEEECTTSCCSS------CCSC---CCTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEE-----ECTTS-CCCEEEC
T ss_pred CCCeEEEccCCCCCe------eCcC---cCcCCCEEECcCC-cCCCc-CHHHhhcccccccc-----ccccc-ccccccc
Confidence 344555666666765 5554 2368999999985 57766 44446788888777 56665 5666554
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCK 163 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~ 163 (270)
. ..+++|++|+++++. ++..+. ....+++|+.|+++++.... +..
T Consensus 73 ~---~~l~~L~~L~Ls~N~-l~~~~~------------------------------~~~~l~~L~~L~l~~~~~~~-~~~ 117 (266)
T d1p9ag_ 73 D---GTLPVLGTLDLSHNQ-LQSLPL------------------------------LGQTLPALTVLDVSFNRLTS-LPL 117 (266)
T ss_dssp C---SCCTTCCEEECCSSC-CSSCCC------------------------------CTTTCTTCCEEECCSSCCCC-CCS
T ss_pred c---ccccccccccccccc-cccccc------------------------------ccccccccccccccccccce-eec
Confidence 2 468899999999984 443331 01227899999999885322 221
Q ss_pred ccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeec
Q 038160 164 QDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVIN 243 (270)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 243 (270)
.....++++++|.+.++ .++.+.+.....+++|+.++++++ +++.+. ...+..+++|+.|+++++. ++.+.
T Consensus 118 ---~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-L~~lp-- 188 (266)
T d1p9ag_ 118 ---GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQENS-LYTIP-- 188 (266)
T ss_dssp ---STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSSC-CCCCC--
T ss_pred ---ccccccccccccccccc-ccceeccccccccccchhcccccc-cccccC-ccccccccccceeecccCC-CcccC--
Confidence 22345789999999986 455665565667899999999976 566553 3456788999999999984 77662
Q ss_pred cCCCCccceeecCccCeeecCC
Q 038160 244 DKDGVEKEEIVFCKLKTLQLFD 265 (270)
Q Consensus 244 ~~~~~~~~~~~~~~L~~L~l~~ 265 (270)
.....+++|++|.+.+
T Consensus 189 ------~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 189 ------KGFFGSHLLPFAFLHG 204 (266)
T ss_dssp ------TTTTTTCCCSEEECCS
T ss_pred ------hhHCCCCCCCEEEecC
Confidence 1122467888888875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.1e-09 Score=87.90 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=101.3
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
+++++|+++++.++.+ |.+.+..+++|++|++.++.....+ +...+.+++.++++ .+..+.++..+..
T Consensus 29 ~~l~~L~Ls~n~i~~l------~~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l-----~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVI------QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEI-----RIEKANNLLYINP 96 (242)
T ss_dssp SCCSEEEEESCCCCEE------CTTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEE-----EEECCTTCCEECT
T ss_pred CCCCEEECcCCcCCcc------ChhHhhccchhhhhhhcccccccee-eccccccccccccc-----ccccccccccccc
Confidence 4778888887777664 2222226788888888776544433 44345566666555 4555666666554
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCc--cccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRP--YHLKQL 161 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c--~~l~~~ 161 (270)
.. ...+++|+++++.++. ++..+.. ..+.+++.+.+..+ .++..+
T Consensus 97 ~~-~~~l~~L~~l~l~~~~-l~~~~~~-------------------------------~~~~~l~~l~~~~~~n~~l~~i 143 (242)
T d1xwdc1 97 EA-FQNLPNLQYLLISNTG-IKHLPDV-------------------------------HKIHSLQKVLLDIQDNINIHTI 143 (242)
T ss_dssp TS-EECCTTCCEEEEESCC-CCSCCCC-------------------------------TTTCBSSCEEEEEESCTTCCEE
T ss_pred cc-ccccccccccccchhh-hcccccc-------------------------------cccccccccccccccccccccc
Confidence 32 2356778888887763 3332210 01333333332222 223322
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
... ........++.+.+.++ .++.+... ....+++.++...++.+++.+. ...+..+++|+.|+++++. ++++
T Consensus 144 ~~~--~~~~~~~~l~~L~l~~n-~l~~i~~~-~~~~~~l~~~~~l~~n~l~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l 216 (242)
T d1xwdc1 144 ERN--SFVGLSFESVILWLNKN-GIQEIHNC-AFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHSL 216 (242)
T ss_dssp CTT--SSTTSBSSCEEEECCSS-CCCEECTT-TTTTCCEEEEECTTCTTCCCCC-TTTTTTSCCCSEEECTTSC-CCCC
T ss_pred ccc--ccccccccceeeecccc-cccccccc-cccchhhhcccccccccccccc-HHHhcCCCCCCEEECCCCc-CCcc
Confidence 111 11111235666666553 34444333 4445666777766777777653 3345678888888888874 5554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.05 E-value=1.5e-09 Score=86.45 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=111.2
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.+..+. |.. .+++|+++.++++ .++.+. .++++++|+.+ +++++... ..
T Consensus 61 ~l~~L~~L~ls~n~i~~~~-----~l~---~l~~l~~l~~~~n-~~~~i~---~l~~l~~L~~l-----~l~~~~~~-~~ 122 (227)
T d1h6ua2 61 YLNNLIGLELKDNQITDLA-----PLK---NLTKITELELSGN-PLKNVS---AIAGLQSIKTL-----DLTSTQIT-DV 122 (227)
T ss_dssp GCTTCCEEECCSSCCCCCG-----GGT---TCCSCCEEECCSC-CCSCCG---GGTTCTTCCEE-----ECTTSCCC-CC
T ss_pred cCCCCcEeecCCceeeccc-----ccc---ccccccccccccc-cccccc---ccccccccccc-----cccccccc-cc
Confidence 4899999999998887642 222 8999999999887 344432 25677777766 55555321 11
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
. .....+.++.+.+..+.- ..... ....++|+.|++.++. +...
T Consensus 123 ~---~~~~~~~~~~l~~~~~~~-~~~~~-------------------------------~~~~~~L~~L~l~~n~-~~~~ 166 (227)
T d1h6ua2 123 T---PLAGLSNLQVLYLDLNQI-TNISP-------------------------------LAGLTNLQYLSIGNAQ-VSDL 166 (227)
T ss_dssp G---GGTTCTTCCEEECCSSCC-CCCGG-------------------------------GGGCTTCCEEECCSSC-CCCC
T ss_pred c---hhccccchhhhhchhhhh-chhhh-------------------------------hccccccccccccccc-cccc
Confidence 1 123466777887766642 21110 1127789999998873 2221
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
.....+++|++|++++| .++++. . ...+++|++|++++| +++++. ..+++++|+.|++++
T Consensus 167 -----~~l~~l~~L~~L~Ls~n-~l~~l~-~-l~~l~~L~~L~Ls~N-~lt~i~---~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 167 -----TPLANLSKLTTLKADDN-KISDIS-P-LASLPNLIEVHLKNN-QISDVS---PLANTSNLFIVTLTN 226 (227)
T ss_dssp -----GGGTTCTTCCEEECCSS-CCCCCG-G-GGGCTTCCEEECTTS-CCCBCG---GGTTCTTCCEEEEEE
T ss_pred -----hhhcccccceecccCCC-ccCCCh-h-hcCCCCCCEEECcCC-cCCCCc---ccccCCCCCEEEeeC
Confidence 11345899999999987 466653 2 567899999999998 688753 257889999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.05 E-value=1.3e-09 Score=85.03 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=90.5
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.++++++|+++++ .++.+ ++++.+++|++| +++++ +++.+.. ...+++|++|+++++. +..++.
T Consensus 38 ~l~~l~~L~l~~~-~i~~l---~~l~~l~nL~~L-----~Ls~N-~l~~~~~---l~~l~~L~~L~l~~n~-~~~~~~-- 101 (199)
T d2omxa2 38 DLDQVTTLQADRL-GIKSI---DGVEYLNNLTQI-----NFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP-- 101 (199)
T ss_dssp HHTTCCEEECTTS-CCCCC---TTGGGCTTCCEE-----ECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG--
T ss_pred HhcCCCEEECCCC-CCCCc---cccccCCCcCcC-----ccccc-cccCccc---ccCCcccccccccccc-cccccc--
Confidence 4677888887776 34443 225666776666 55555 4554432 2467778888887774 222220
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|+++++...... ....+++|+.|+++++. +..+ +
T Consensus 102 -----------------------------l~~l~~L~~L~l~~~~~~~~~------~~~~l~~L~~L~l~~n~-l~~~-~ 144 (199)
T d2omxa2 102 -----------------------------LANLTNLTGLTLFNNQITDID------PLKNLTNLNRLELSSNT-ISDI-S 144 (199)
T ss_dssp -----------------------------GTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSC-CCCC-G
T ss_pred -----------------------------ccccccccccccccccccccc------ccchhhhhHHhhhhhhh-hccc-c
Confidence 112677888888777543211 12346788888887764 3332 1
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
....+++|++|++.++ +++++. .+..+++|+.|++++++ +.++
T Consensus 145 -~l~~~~~L~~L~l~~n-~l~~l~---~l~~l~~L~~L~ls~N~-i~~i 187 (199)
T d2omxa2 145 -ALSGLTSLQQLNFSSN-QVTDLK---PLANLTTLERLDISSNK-VSDI 187 (199)
T ss_dssp -GGTTCTTCSEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCC
T ss_pred -cccccccccccccccc-cccCCc---cccCCCCCCEEECCCCC-CCCC
Confidence 2456788888888875 455432 24677888888888883 6654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.03 E-value=1.5e-09 Score=85.46 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=85.5
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+.+|++|++.+| .++.+. ++..+++|++| ++++. +++++.. ...+++|+.|+++++ +++.++.
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~---~l~~l~~L~~L-----~L~~n-~i~~l~~---~~~l~~L~~L~l~~n-~i~~l~~-- 107 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKL-----FLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSS-- 107 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCT---TGGGCTTCCEE-----ECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGG--
T ss_pred HhcCccEEECcCC-CCCCch---hHhhCCCCCEE-----eCCCc-cccCccc---cccCccccccccccc-ccccccc--
Confidence 4566777777665 344332 24566666655 44444 3333332 134667777777766 3443331
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|++.++.. ..+ .....+++++.++++++. +.+.
T Consensus 108 -----------------------------l~~l~~L~~L~l~~~~~-~~~-----~~l~~l~~l~~l~~~~n~-l~~~-- 149 (210)
T d1h6ta2 108 -----------------------------LKDLKKLKSLSLEHNGI-SDI-----NGLVHLPQLESLYLGNNK-ITDI-- 149 (210)
T ss_dssp -----------------------------GTTCTTCCEEECTTSCC-CCC-----GGGGGCTTCCEEECCSSC-CCCC--
T ss_pred -----------------------------ccccccccccccccccc-ccc-----cccccccccccccccccc-cccc--
Confidence 01156677777666632 111 112335666666666543 2221
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
.....+++|+.+++.++ +++++. ....+++|++|+++++ +++++. ....+++|++|++.
T Consensus 150 ~~~~~l~~L~~l~l~~n-~l~~i~---~l~~l~~L~~L~Ls~N-~i~~l~---------~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 150 TVLSRLTKLDTLSLEDN-QISDIV---PLAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLELF 208 (210)
T ss_dssp GGGGGCTTCSEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEEEE
T ss_pred ccccccccccccccccc-cccccc---cccCCCCCCEEECCCC-CCCCCh---------hhcCCCCCCEEEcc
Confidence 12345677777777765 344331 1456677777777776 355441 01135667777664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1e-08 Score=84.19 Aligned_cols=200 Identities=18% Similarity=0.161 Sum_probs=118.9
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
+++++|+|++++++.+. ...+..+++|++|++++. .+..+.+ ....++..++++ .......++.+..
T Consensus 32 ~~~~~L~Ls~N~i~~i~------~~~f~~l~~L~~L~ls~n-~l~~i~~-~~~~~~~~~~~l-----~~~~~~~~~~l~~ 98 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVP------AASFRACRNLTILWLHSN-VLARIDA-AAFTGLALLEQL-----DLSDNAQLRSVDP 98 (284)
T ss_dssp TTCSEEECTTSCCCEEC------TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEE-----ECCSCTTCCCCCT
T ss_pred CCCCEEECcCCcCCCCC------HHHhhccccccccccccc-ccccccc-cccccccccccc-----ccccccccccccc
Confidence 35778888887777642 222226788888888765 4555432 234455555544 4455555555543
Q ss_pred CccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++.. ..++... ...+..++...-.+..+ ..+....+++|+.|++.++ +++.
T Consensus 99 ~~-~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i--------~~~~f~~~~~L~~L~l~~N-~l~~ 167 (284)
T d1ozna_ 99 AT-FHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQAL--------PDDTFRDLGNLTHLFLHGN-RISS 167 (284)
T ss_dssp TT-TTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSS-CCCE
T ss_pred hh-hcccccCCEEecCCccc-ccccccccchhcccchhhhcccccccc--------ChhHhccccchhhcccccC-cccc
Confidence 22 23578889998888853 2222111 11111111110001000 0111223778999999988 5665
Q ss_pred cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 161 LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+.. .+...+++|+++.+.++. +..+.+..+..+++|++|+++++. +..+ ....++.+++|++|++++
T Consensus 168 l~~---~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~-~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 168 VPE---RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSAL-PTEALAPLRALQYLRLND 234 (284)
T ss_dssp ECT---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCC-CHHHHTTCTTCCEEECCS
T ss_pred cch---hhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccc-cccc-cccccccccccCEEEecC
Confidence 433 223457899999999865 445556667788999999999764 4443 445678899999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.92 E-value=5.2e-09 Score=87.13 Aligned_cols=211 Identities=17% Similarity=0.093 Sum_probs=111.2
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
++++|+|.++++..... +|..++ .+++|++|++++|.++.+..|.. ++++++|++|+|..-.+. +....
T Consensus 51 ~v~~L~L~~~~l~g~~~---lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~------~~~~~ 119 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYP---IPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS------GAIPD 119 (313)
T ss_dssp CEEEEEEECCCCSSCEE---CCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCE------EECCG
T ss_pred EEEEEECCCCCCCCCCC---CChHHh-cCccccccccccccccccccccc-cccccccchhhhcccccc------ccccc
Confidence 58889999977765332 677777 99999999999988887544443 789999999864433222 22111
Q ss_pred ccccCCCcccEEEeccCCCceeecccc--cccccCCCCC-------CCC-CCCCCCC-ccc--cc--cccCcC-CC--CC
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLG-------IPA-QQPPLPL-EKE--GC--LEKHLG-KL--AM 146 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~-------~~~-~~~l~~~-~~~--~c--~e~~~~-~~--~~ 146 (270)
. ...+++|+.++++++.....+|... .+.++.+... ++. ...+... ..+ .. +.+... .+ ..
T Consensus 120 ~-~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~ 198 (313)
T d1ogqa_ 120 F-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp G-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred c-ccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1234445555555543332222111 1111111100 000 0000000 000 00 000000 01 12
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
...+++..+.....+ ......+++++++.+.++..-. ..+. ...+++|+.|+++++. ++..+ +..+..+++|
T Consensus 199 ~~~l~l~~~~~~~~~----~~~~~~~~~l~~l~~~~~~l~~-~~~~-~~~~~~L~~L~Ls~N~-l~g~i-P~~l~~L~~L 270 (313)
T d1ogqa_ 199 LAFVDLSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNR-IYGTL-PQGLTQLKFL 270 (313)
T ss_dssp CSEEECCSSEEEECC----GGGCCTTSCCSEEECCSSEECC-BGGG-CCCCTTCCEEECCSSC-CEECC-CGGGGGCTTC
T ss_pred ccccccccccccccc----cccccccccccccccccccccc-cccc-cccccccccccCccCe-ecccC-ChHHhCCCCC
Confidence 223444443221111 1122347889999999876433 3333 5678999999999764 54333 3456789999
Q ss_pred cEEEEecCC
Q 038160 227 VKVQVYGCR 235 (270)
Q Consensus 227 ~~L~i~~c~ 235 (270)
++|+++++.
T Consensus 271 ~~L~Ls~N~ 279 (313)
T d1ogqa_ 271 HSLNVSFNN 279 (313)
T ss_dssp CEEECCSSE
T ss_pred CEEECcCCc
Confidence 999999984
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.89 E-value=1.4e-08 Score=84.09 Aligned_cols=210 Identities=15% Similarity=0.090 Sum_probs=126.9
Q ss_pred ccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKL 104 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 104 (270)
+|.+ -.+++++|+++++ .++++++ ..+.++++|++| ++++++-. .+.+.. ...+++|+.|+++++ ++
T Consensus 25 lP~~---l~~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L-----~l~~n~~~-~i~~~~-f~~l~~L~~L~l~~n-~l 91 (305)
T d1xkua_ 25 VPKD---LPPDTALLDLQNN-KITEIKD-GDFKNLKNLHTL-----ILINNKIS-KISPGA-FAPLVKLERLYLSKN-QL 91 (305)
T ss_dssp CCCS---CCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEE-----ECCSSCCC-CBCTTT-TTTCTTCCEEECCSS-CC
T ss_pred cCCC---CCCCCCEEECcCC-cCCCcCh-hHhhcccccccc-----cccccccc-ccchhh-hhCCCccCEecccCC-cc
Confidence 5665 3478999999997 6777744 346788888777 56665432 332222 246888999999988 46
Q ss_pred eeecccccccccCCCCC---CCCCC--------CCCCCc--cccc-----cccCcCCCCCCCEEEecCcccccccccccc
Q 038160 105 KIFTEDLSQNNENDQLG---IPAQQ--------PPLPLE--KEGC-----LEKHLGKLAMIKELKLYRPYHLKQLCKQDS 166 (270)
Q Consensus 105 ~~~~~~~~~~~~~~~~~---~~~~~--------~l~~~~--~~~c-----~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~ 166 (270)
+.++......+..+... ...+. ...... ..++ ..+....+++|+.+++.++. +..+.
T Consensus 92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~---- 166 (305)
T d1xkua_ 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP---- 166 (305)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC----
T ss_pred CcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccC----
Confidence 66664332222222110 00000 000000 0000 01112237788888888873 33332
Q ss_pred cccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCC
Q 038160 167 KLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKD 246 (270)
Q Consensus 167 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 246 (270)
...+++|++|+++++...... +.....+++++.|+++++ ++..+.. ..+..+++|++|++++| .+..+.
T Consensus 167 --~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~L~~lp----- 235 (305)
T d1xkua_ 167 --QGLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNN-KLVKVP----- 235 (305)
T ss_dssp --SSCCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCC-----
T ss_pred --cccCCccCEEECCCCcCCCCC-hhHhhccccccccccccc-ccccccc-ccccccccceeeecccc-cccccc-----
Confidence 123689999999987654433 333566788999999987 5666543 45678899999999999 466552
Q ss_pred CCccceeecCccCeeecCCC
Q 038160 247 GVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 247 ~~~~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++.+.
T Consensus 236 ---~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 236 ---GGLADHKYIQVVYLHNN 252 (305)
T ss_dssp ---TTTTTCSSCCEEECCSS
T ss_pred ---cccccccCCCEEECCCC
Confidence 11224789999988874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.88 E-value=1.1e-08 Score=79.76 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=108.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
++++++|++++++++.+ + ++. .+++|++|+++++ .++.+.+ ++++++|++| +++++. ++.+.
T Consensus 39 l~~l~~L~l~~~~i~~l-~------~l~-~l~nL~~L~Ls~N-~l~~~~~---l~~l~~L~~L-----~l~~n~-~~~~~ 100 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI-D------GVE-YLNNLTQINFSNN-QLTDITP---LKNLTKLVDI-----LMNNNQ-IADIT 100 (199)
T ss_dssp HTTCCEEECTTSCCCCC-T------TGG-GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEE-----ECCSSC-CCCCG
T ss_pred hcCCCEEECCCCCCCCc-c------ccc-cCCCcCcCccccc-cccCccc---ccCCcccccc-----cccccc-ccccc
Confidence 57889999999888763 2 232 7999999999997 5766533 6788888877 455442 22222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ...+++|+.|++++|.... .+. ...+++|+.|+++++. +..+.
T Consensus 101 ~---l~~l~~L~~L~l~~~~~~~-~~~-------------------------------~~~l~~L~~L~l~~n~-l~~~~ 144 (199)
T d2omxa2 101 P---LANLTNLTGLTLFNNQITD-IDP-------------------------------LKNLTNLNRLELSSNT-ISDIS 144 (199)
T ss_dssp G---GTTCTTCSEEECCSSCCCC-CGG-------------------------------GTTCTTCSEEECCSSC-CCCCG
T ss_pred c---ccccccccccccccccccc-ccc-------------------------------cchhhhhHHhhhhhhh-hcccc
Confidence 1 2467889999998875432 110 1127889999998873 43321
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEE
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKV 229 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 229 (270)
....+++|++|.+.+|. ++++. ....+++|++|+++++ +++++. ....+++|++|
T Consensus 145 -----~l~~~~~L~~L~l~~n~-l~~l~--~l~~l~~L~~L~ls~N-~i~~i~---~l~~L~~L~~L 199 (199)
T d2omxa2 145 -----ALSGLTSLQQLNFSSNQ-VTDLK--PLANLTTLERLDISSN-KVSDIS---VLAKLTNLESL 199 (199)
T ss_dssp -----GGTTCTTCSEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEE
T ss_pred -----ccccccccccccccccc-ccCCc--cccCCCCCCEEECCCC-CCCCCc---cccCCCCCCcC
Confidence 13457899999999874 44442 2467899999999988 577642 24667888765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.84 E-value=1.1e-08 Score=80.34 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=113.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+.+|++|++.++.++.+ + ++. .+++|++|+++++ .++++.+ ++++++|+.| +++++ +++.+.
T Consensus 45 L~~L~~L~l~~~~i~~l------~-~l~-~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L-----~l~~n-~i~~l~ 106 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV------Q-GIQ-YLPNVTKLFLNGN-KLTDIKP---LANLKNLGWL-----FLDEN-KVKDLS 106 (210)
T ss_dssp HHTCCEEECTTSCCCCC------T-TGG-GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEE-----ECCSS-CCCCGG
T ss_pred hcCccEEECcCCCCCCc------h-hHh-hCCCCCEEeCCCc-cccCccc---cccCcccccc-----ccccc-cccccc
Confidence 45788899988877753 1 233 7999999999997 5666543 5778888777 55554 344443
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ...+++|+.|++.+|.. ..++. ...+++++.+++.++. +...
T Consensus 107 ~---l~~l~~L~~L~l~~~~~-~~~~~-------------------------------l~~l~~l~~l~~~~n~-l~~~- 149 (210)
T d1h6ta2 107 S---LKDLKKLKSLSLEHNGI-SDING-------------------------------LVHLPQLESLYLGNNK-ITDI- 149 (210)
T ss_dssp G---GTTCTTCCEEECTTSCC-CCCGG-------------------------------GGGCTTCCEEECCSSC-CCCC-
T ss_pred c---ccccccccccccccccc-ccccc-------------------------------cccccccccccccccc-cccc-
Confidence 2 24588999999999853 22220 1127788888887773 3322
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
.....+++|+++.++++. +.++.+ ...+++|++|+++++ +++++. .+..+++|+.|++++
T Consensus 150 ----~~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 150 ----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS 209 (210)
T ss_dssp ----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEEE
T ss_pred ----cccccccccccccccccc-cccccc--ccCCCCCCEEECCCC-CCCCCh---hhcCCCCCCEEEccC
Confidence 123457899999999874 444422 457899999999987 677652 357789999999875
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=2.9e-08 Score=84.24 Aligned_cols=184 Identities=21% Similarity=0.187 Sum_probs=110.0
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++++.++++++.++.+. |.+ .+++|++|+++++ .++.+. .++.+++|+.+ +++++. ++++.
T Consensus 196 l~~~~~l~l~~n~i~~~~-----~~~---~~~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L-----~l~~n~-l~~~~ 257 (384)
T d2omza2 196 LTNLESLIATNNQISDIT-----PLG---ILTNLDELSLNGN-QLKDIG---TLASLTNLTDL-----DLANNQ-ISNLA 257 (384)
T ss_dssp CTTCSEEECCSSCCCCCG-----GGG---GCTTCCEEECCSS-CCCCCG---GGGGCTTCSEE-----ECCSSC-CCCCG
T ss_pred ccccceeeccCCccCCCC-----ccc---ccCCCCEEECCCC-CCCCcc---hhhcccccchh-----ccccCc-cCCCC
Confidence 567777777776666532 222 5678888888876 344432 25666776666 454442 33332
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc-cccccCCCCCCCCCCCCCCCccccccccC--cCCCCCCCEEEecCccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL-SQNNENDQLGIPAQQPPLPLEKEGCLEKH--LGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~c~e~~--~~~~~~L~~L~i~~c~~l~ 159 (270)
. ...+++|++|+++++. ++.++... ...........- . +++. ...+++++.|+++++ +++
T Consensus 258 ~---~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~~~n---~---------l~~~~~~~~~~~l~~L~ls~n-~l~ 320 (384)
T d2omza2 258 P---LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN---Q---------LEDISPISNLKNLTYLTLYFN-NIS 320 (384)
T ss_dssp G---GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS---C---------CSCCGGGGGCTTCSEEECCSS-CCS
T ss_pred c---ccccccCCEeeccCcc-cCCCCcccccccccccccccc---c---------cccccccchhcccCeEECCCC-CCC
Confidence 2 2456788888887763 33332110 111111110000 0 0011 122788999999887 455
Q ss_pred ccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
.+. ....+++|++|++++| .++++. . ...+++|++|+++++ +++++.. ...+++|+.|++++
T Consensus 321 ~l~-----~l~~l~~L~~L~L~~n-~l~~l~-~-l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~ 382 (384)
T d2omza2 321 DIS-----PVSSLTKLQRLFFANN-KVSDVS-S-LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND 382 (384)
T ss_dssp CCG-----GGGGCTTCCEEECCSS-CCCCCG-G-GGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred CCc-----ccccCCCCCEEECCCC-CCCCCh-h-HcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence 432 1345899999999998 466542 3 567899999999866 6776532 57889999999875
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.69 E-value=6.1e-08 Score=80.46 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=119.6
Q ss_pred CCCCccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcce
Q 038160 2 ALPNLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRC 80 (270)
Q Consensus 2 ~~~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~ 80 (270)
++++|++|+|++ +++.. .+|..+. .+++|++|+++++ ++....+ ..+..+.+|++++ +++......
T Consensus 74 ~L~~L~~L~Ls~~N~l~g-----~iP~~i~-~L~~L~~L~Ls~N-~l~~~~~-~~~~~~~~L~~l~-----l~~N~~~~~ 140 (313)
T d1ogqa_ 74 NLPYLNFLYIGGINNLVG-----PIPPAIA-KLTQLHYLYITHT-NVSGAIP-DFLSQIKTLVTLD-----FSYNALSGT 140 (313)
T ss_dssp GCTTCSEEEEEEETTEES-----CCCGGGG-GCTTCSEEEEEEE-CCEEECC-GGGGGCTTCCEEE-----CCSSEEESC
T ss_pred cCcccccccccccccccc-----ccccccc-cccccchhhhccc-ccccccc-ccccchhhhcccc-----ccccccccc
Confidence 589999999998 77763 2677776 9999999999997 4555433 3367788887774 333222111
Q ss_pred ecCCccccCCCcccEEEeccCCCceeecccc--cccc-cCCCCCC-------C-CCCCCC--CCccccc-----cccCcC
Q 038160 81 LYPGMHTSEWPALEILSVHRCDKLKIFTEDL--SQNN-ENDQLGI-------P-AQQPPL--PLEKEGC-----LEKHLG 142 (270)
Q Consensus 81 ~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~-~~~~~~~-------~-~~~~l~--~~~~~~c-----~e~~~~ 142 (270)
++ .....++.++.++++++..-..+|... ...+ ..+.... + .+..+. ..+...+ ......
T Consensus 141 ~p--~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~ 218 (313)
T d1ogqa_ 141 LP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp CC--GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCC
T ss_pred Cc--hhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 122456777777777765333344221 0111 1000000 0 000000 0000000 111123
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++++.+++.++. +..... ....+++|++|+++++. ++...|.....+++|++|+++++ +++..++ ...+
T Consensus 219 ~~~~l~~l~~~~~~-l~~~~~----~~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP--~~~~ 289 (313)
T d1ogqa_ 219 SDKNTQKIHLAKNS-LAFDLG----KVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFN-NLCGEIP--QGGN 289 (313)
T ss_dssp TTSCCSEEECCSSE-ECCBGG----GCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSS-EEEEECC--CSTT
T ss_pred cccccccccccccc-cccccc----ccccccccccccCccCe-ecccCChHHhCCCCCCEEECcCC-cccccCC--Cccc
Confidence 37889999988884 322111 23457899999999875 44333555788999999999986 3442222 1356
Q ss_pred ccCCcEEEEecCC
Q 038160 223 LVRLVKVQVYGCR 235 (270)
Q Consensus 223 l~~L~~L~i~~c~ 235 (270)
+.+|+.+++.+.+
T Consensus 290 L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred CCCCCHHHhCCCc
Confidence 6777777777765
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.8e-07 Score=74.41 Aligned_cols=182 Identities=18% Similarity=0.138 Sum_probs=98.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.+... +|.+.+..+++++++.+..+.++.... ...+.++++|+++. +.+. +++..
T Consensus 51 ~l~~L~~L~ls~n~~~~~-----i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L~~l~-----l~~~-~l~~~ 118 (242)
T d1xwdc1 51 GFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLL-----ISNT-GIKHL 118 (242)
T ss_dssp TCTTCCEEEEESCTTCCE-----ECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCTTCCEEE-----EESC-CCCSC
T ss_pred ccchhhhhhhccccccce-----eeccccccccccccccccccccccccc-cccccccccccccc-----cchh-hhccc
Confidence 478999999999666542 223333378999999999988887764 44467888888874 5443 23322
Q ss_pred cCCccccCCCcccEEEecc--CCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 82 YPGMHTSEWPALEILSVHR--CDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~--c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
... ..+..++.+.+.. ...+..++... +. .....++.|++.+. +++
T Consensus 119 ~~~---~~~~~l~~l~~~~~~n~~l~~i~~~~---~~-------------------------~~~~~l~~L~l~~n-~l~ 166 (242)
T d1xwdc1 119 PDV---HKIHSLQKVLLDIQDNINIHTIERNS---FV-------------------------GLSFESVILWLNKN-GIQ 166 (242)
T ss_dssp CCC---TTTCBSSCEEEEEESCTTCCEECTTS---ST-------------------------TSBSSCEEEECCSS-CCC
T ss_pred ccc---cccccccccccccccccccccccccc---cc-------------------------cccccceeeecccc-ccc
Confidence 221 2234444444322 22344443110 00 00234556666553 333
Q ss_pred ccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
.+... ....++++++....+..++.++......+++|++|++++.. ++.+.. ..+.++++|+.+++.+
T Consensus 167 ~i~~~----~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 167 EIHNC----AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-YGLENLKKLRARSTYN 234 (242)
T ss_dssp EECTT----TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS-SSCTTCCEEESSSEES
T ss_pred ccccc----cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH-HHHcCCcccccCcCCC
Confidence 33221 12234555555555566766655445667888888887753 555432 2334444444444433
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=8e-07 Score=72.48 Aligned_cols=206 Identities=15% Similarity=0.105 Sum_probs=119.6
Q ss_pred ccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKL 104 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 104 (270)
+|.. -.+++++|+++++ +++.++ ...+.++++|++| ++++. +++.+.... ...++.++.+.+.....+
T Consensus 26 iP~~---ip~~~~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L-----~ls~n-~l~~i~~~~-~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 26 VPVG---IPAASQRIFLHGN-RISHVP-AASFRACRNLTIL-----WLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp CCTT---CCTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEE-----ECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTC
T ss_pred cCCC---CCCCCCEEECcCC-cCCCCC-HHHhhcccccccc-----ccccc-ccccccccc-cccccccccccccccccc
Confidence 5554 3467899999986 677764 3446788888777 45443 344444322 234567777777777666
Q ss_pred eeeccccc---ccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEe
Q 038160 105 KIFTEDLS---QNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVY 181 (270)
Q Consensus 105 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~ 181 (270)
+.++.... ++++.++.+.-....+. .......++|+.+++.+. +++.+.. .+...+++|+.|+++
T Consensus 94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~--------~~~~~~~~~L~~l~l~~N-~l~~i~~---~~f~~~~~L~~L~l~ 161 (284)
T d1ozna_ 94 RSVDPATFHGLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDN-ALQALPD---DTFRDLGNLTHLFLH 161 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECC
T ss_pred ccccchhhcccccCCEEecCCccccccc--------ccccchhcccchhhhccc-cccccCh---hHhccccchhhcccc
Confidence 65543221 12222211110000000 001122667888888776 4444322 123356788899988
Q ss_pred cCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCee
Q 038160 182 HSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTL 261 (270)
Q Consensus 182 ~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 261 (270)
++ .++.+.+.....+++|+++.+.++. +..+. +..+..+++|+.|+++++. +..+. +.....+++|++|
T Consensus 162 ~N-~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~-~~~f~~l~~L~~L~l~~N~-i~~~~-------~~~~~~~~~L~~L 230 (284)
T d1ozna_ 162 GN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVH-PHAFRDLGRLMTLYLFANN-LSALP-------TEALAPLRALQYL 230 (284)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CSCCC-------HHHHTTCTTCCEE
T ss_pred cC-cccccchhhhccccccchhhhhhcc-ccccC-hhHhhhhhhcccccccccc-ccccc-------ccccccccccCEE
Confidence 87 4666655555678888998888764 44443 3456778889999998874 33331 1111246788888
Q ss_pred ecCC
Q 038160 262 QLFD 265 (270)
Q Consensus 262 ~l~~ 265 (270)
++.+
T Consensus 231 ~l~~ 234 (284)
T d1ozna_ 231 RLND 234 (284)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.52 E-value=1.5e-06 Score=72.28 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=44.4
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE---------------eee
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE---------------LTT 69 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~---------------L~~ 69 (270)
++++|++++++++. +|. ..++|++|++++ ..++.++.. + .+|+.|+ |++
T Consensus 39 ~l~~LdLs~~~L~~------lp~----~~~~L~~L~Ls~-N~l~~lp~~--~---~~L~~L~l~~n~l~~l~~lp~~L~~ 102 (353)
T d1jl5a_ 39 QAHELELNNLGLSS------LPE----LPPHLESLVASC-NSLTELPEL--P---QSLKSLLVDNNNLKALSDLPPLLEY 102 (353)
T ss_dssp TCSEEECTTSCCSC------CCS----CCTTCSEEECCS-SCCSSCCCC--C---TTCCEEECCSSCCSCCCSCCTTCCE
T ss_pred CCCEEEeCCCCCCC------CCC----CCCCCCEEECCC-CCCcccccc--h---hhhhhhhhhhcccchhhhhcccccc
Confidence 56777887776764 442 356778887764 466655321 2 3444443 444
Q ss_pred EEeccCCCcceecCCccccCCCcccEEEeccCC
Q 038160 70 LRLQGLPKLRCLYPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 70 L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~ 102 (270)
|++++. .++.++. ...+++|++|++.++.
T Consensus 103 L~L~~n-~l~~lp~---~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 103 LGVSNN-QLEKLPE---LQNSSFLKIIDVDNNS 131 (353)
T ss_dssp EECCSS-CCSSCCC---CTTCTTCCEEECCSSC
T ss_pred cccccc-ccccccc---hhhhccceeecccccc
Confidence 555544 2333322 2346778888887764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.51 E-value=2.4e-06 Score=70.91 Aligned_cols=57 Identities=23% Similarity=0.130 Sum_probs=37.2
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
+++|++|++++|. ++.++ ..+++|++|++++| +++.+. ..+++|++|++++|+ ++++
T Consensus 283 ~~~L~~L~Ls~N~-l~~lp----~~~~~L~~L~L~~N-~L~~l~-----~~~~~L~~L~L~~N~-L~~l 339 (353)
T d1jl5a_ 283 PPSLEELNVSNNK-LIELP----ALPPRLERLIASFN-HLAEVP-----ELPQNLKQLHVEYNP-LREF 339 (353)
T ss_dssp CTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSC
T ss_pred CCCCCEEECCCCc-cCccc----cccCCCCEEECCCC-cCCccc-----cccCCCCEEECcCCc-CCCC
Confidence 5678888888764 44442 24678888888755 466542 124578888888875 6655
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=6e-07 Score=67.28 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=29.3
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc---CCCcccCcCCcEEEee
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL---PSSSVSFRNLAKLVAF 206 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~~~L~~L~i~ 206 (270)
+++|+.|++.++ +++.+.. -.....+++|++|++++|+- .... +.....+|+|+.|+-.
T Consensus 86 l~~L~~L~L~~N-~i~~~~~--l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 86 LPDLTELILTNN-SLVELGD--LDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CTTCCEEECCSC-CCCCGGG--GGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccceeccc-ccccccc--ccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCCC
Confidence 566677776665 2322211 01123466777777777642 2111 0123456777776543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.7e-06 Score=64.75 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=57.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++. +++.+. ....+++|++|++++|. ++.+.+.....+++|++|++.++. ++++........+
T Consensus 40 l~~L~~L~Ls~N-~i~~l~-----~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l 111 (162)
T d1a9na_ 40 LDQFDAIDFSDN-EIRKLD-----GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL 111 (162)
T ss_dssp TTCCSEEECCSS-CCCEEC-----CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGC
T ss_pred cccCCEEECCCC-CCCccC-----CcccCcchhhhhccccc-ccCCCccccccccccccceecccc-ccccccccccccc
Confidence 778888888887 455441 13457888899998875 555544434568889999998763 4444322345678
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.+++++|+
T Consensus 112 ~~L~~L~l~~N~ 123 (162)
T d1a9na_ 112 KSLTYLCILRNP 123 (162)
T ss_dssp TTCCEEECCSSG
T ss_pred cccchhhcCCCc
Confidence 889999998885
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.90 E-value=1.6e-05 Score=56.43 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=48.4
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+.|++++++++.+ + ++. .+++|++|++++. .++.+++. ++.+++|+.|+ +++. .++.+. .
T Consensus 1 R~L~Ls~n~l~~l------~-~l~-~l~~L~~L~ls~N-~l~~lp~~--~~~l~~L~~L~-----l~~N-~i~~l~---~ 60 (124)
T d1dcea3 1 RVLHLAHKDLTVL------C-HLE-QLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQ-----ASDN-ALENVD---G 60 (124)
T ss_dssp SEEECTTSCCSSC------C-CGG-GGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEE-----CCSS-CCCCCG---G
T ss_pred CEEEcCCCCCCCC------c-ccc-cCCCCCEEECCCC-ccCcchhh--hhhhhcccccc-----cccc-cccccC---c
Confidence 5788888888763 2 132 7899999999875 57776432 67788887774 4332 233332 1
Q ss_pred ccCCCcccEEEeccC
Q 038160 87 TSEWPALEILSVHRC 101 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c 101 (270)
...+++|++|+++++
T Consensus 61 ~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 61 VANLPRLQELLLCNN 75 (124)
T ss_dssp GTTCSSCCEEECCSS
T ss_pred cccccccCeEECCCC
Confidence 245777777777776
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.87 E-value=7e-05 Score=56.98 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=42.4
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
++++.++.+++. +|.+ -.+++++|++++. .+....+...++++++|++| ++++.. ++.+..+ .
T Consensus 11 ~~v~Cs~~~L~~------iP~~---lp~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L-----~L~~N~-i~~~~~~-~ 73 (192)
T d1w8aa_ 11 TTVDCTGRGLKE------IPRD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKL-----ELKRNQ-LTGIEPN-A 73 (192)
T ss_dssp TEEECTTSCCSS------CCSC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEE-----ECCSSC-CCCBCTT-T
T ss_pred CEEEEeCCCcCc------cCCC---CCCCCCEEEeCCC-CCcccccccccCCCceEeee-----eccccc-ccccccc-c
Confidence 345555556654 4554 2367888888775 45444444445666666665 333321 2222221 1
Q ss_pred ccCCCcccEEEeccCCCceeec
Q 038160 87 TSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
...+++|++|++++. +++.++
T Consensus 74 ~~~~~~L~~L~Ls~N-~l~~l~ 94 (192)
T d1w8aa_ 74 FEGASHIQELQLGEN-KIKEIS 94 (192)
T ss_dssp TTTCTTCCEEECCSC-CCCEEC
T ss_pred cccccccceeeeccc-cccccC
Confidence 223555666666655 344443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.82 E-value=7.5e-07 Score=68.97 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCC------
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVT------ 216 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~------ 216 (270)
+++|+.|++.++ +++.+. ....+++|++|+++++. ++.+.. .....+++|++|++++++--.....
T Consensus 92 ~~~L~~L~l~~N-~i~~l~-----~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 164 (198)
T d1m9la_ 92 ADTLEELWISYN-QIASLS-----GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHCCEEECSEE-ECCCHH-----HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHH
T ss_pred cccccccccccc-cccccc-----cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhh
Confidence 445777777665 444331 12346778888887653 222210 1134578888888887642111110
Q ss_pred --hhHHhhccCCcEEE
Q 038160 217 --SSTAKTLVRLVKVQ 230 (270)
Q Consensus 217 --~~~~~~l~~L~~L~ 230 (270)
......+|+|+.|+
T Consensus 165 ~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 165 YRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHCSSCCEES
T ss_pred HHHHHHHHCCCcCEeC
Confidence 01245678888875
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.81 E-value=9e-05 Score=56.32 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|+++.++.+ .+...+..+++|++|++.+. .+..+ +...+..+++|++| ++++. +++.+.
T Consensus 28 p~~l~~L~Ls~N~i~~~-----~~~~~f~~l~~L~~L~L~~N-~i~~~-~~~~~~~~~~L~~L-----~Ls~N-~l~~l~ 94 (192)
T d1w8aa_ 28 PLHTTELLLNDNELGRI-----SSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQEL-----QLGEN-KIKEIS 94 (192)
T ss_dssp CTTCSEEECCSCCCCSB-----CCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEE-----ECCSC-CCCEEC
T ss_pred CCCCCEEEeCCCCCccc-----ccccccCCCceEeeeecccc-ccccc-ccccccccccccee-----eeccc-cccccC
Confidence 35899999999988652 22233237999999999886 45554 34447788888777 56655 566666
Q ss_pred CCccccCCCcccEEEeccCCCceeec
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
.+. ...+++|++|++++. +++.++
T Consensus 95 ~~~-F~~l~~L~~L~L~~N-~l~~i~ 118 (192)
T d1w8aa_ 95 NKM-FLGLHQLKTLNLYDN-QISCVM 118 (192)
T ss_dssp SSS-STTCTTCCEEECCSS-CCCEEC
T ss_pred HHH-HhCCCcccccccCCc-cccccC
Confidence 543 346899999999998 577666
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.78 E-value=1.2e-05 Score=57.03 Aligned_cols=84 Identities=21% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+ |..+. .+++|++|++++. .++.++ .++.+++|++++ +++. +++.+
T Consensus 18 ~l~~L~~L~ls~N~l~~l------p~~~~-~l~~L~~L~l~~N-~i~~l~---~~~~l~~L~~L~-----l~~N-~i~~~ 80 (124)
T d1dcea3 18 QLLLVTHLDLSHNRLRAL------PPALA-ALRCLEVLQASDN-ALENVD---GVANLPRLQELL-----LCNN-RLQQS 80 (124)
T ss_dssp GGTTCCEEECCSSCCCCC------CGGGG-GCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEE-----CCSS-CCCSS
T ss_pred cCCCCCEEECCCCccCcc------hhhhh-hhhcccccccccc-cccccC---ccccccccCeEE-----CCCC-ccCCC
Confidence 478999999999999874 44444 8999999999985 576653 278889888885 4332 22322
Q ss_pred cCCccccCCCcccEEEeccCC
Q 038160 82 YPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~ 102 (270)
..-.....+++|+.|++++.+
T Consensus 81 ~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 81 AAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp STTGGGGGCTTCCEEECTTSG
T ss_pred CCchhhcCCCCCCEEECCCCc
Confidence 221123468899999998864
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00031 Score=51.47 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=36.1
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
.+++|+.|++.+...++.+.+ ..+.++++|+.| ++++. +++.+..+. ...+++|++|++++. +++.++
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L-----~Ls~N-~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~l~ 96 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLEL-RDLRGLGELRNL-----TIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLS 96 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEE-----ECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCC
T ss_pred CccccCeeecCCCccccccCc-hhhccccccCcc-----eeecc-ccCCccccc-ccccccccceeccCC-CCcccC
Confidence 566666666665555665532 234556665555 34443 344444332 234566666666665 355444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.22 E-value=2.1e-05 Score=60.48 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=32.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+ + ++. .+++|++|++++| .++.++.. ...+++|++|+
T Consensus 47 L~~L~~L~Ls~n~I~~i------~-~l~-~l~~L~~L~Ls~N-~i~~i~~~--~~~~~~L~~L~ 99 (198)
T d1m9la_ 47 LKACKHLALSTNNIEKI------S-SLS-GMENLRILSLGRN-LIKKIENL--DAVADTLEELW 99 (198)
T ss_dssp TTTCCEEECSEEEESCC------C-CHH-HHTTCCEEECCEE-EECSCSSH--HHHHHHCCEEE
T ss_pred ccccceeECcccCCCCc------c-ccc-CCccccChhhccc-cccccccc--ccccccccccc
Confidence 67788888877777653 1 122 6788888888776 35554322 34455666665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00039 Score=50.97 Aligned_cols=85 Identities=20% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|++.+...++.+..+ ....+++|+.|+++++ .++.+.+..+..+++|++|++++. +++.+.. .++..
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~---~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~- 102 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW-KTVQG- 102 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCS-TTTCS-
T ss_pred ccccCeeecCCCccccccCch---hhccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccCh-hhhcc-
Confidence 789999999988778876432 2345899999999986 477776666778999999999965 5665433 33343
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
.+|+.|++++-+
T Consensus 103 ~~l~~L~L~~Np 114 (156)
T d2ifga3 103 LSLQELVLSGNP 114 (156)
T ss_dssp CCCCEEECCSSC
T ss_pred ccccccccCCCc
Confidence 469999998753
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.66 E-value=0.0001 Score=61.11 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCCCCEEEecCccccccccccc--ccccccccccceEEEecCcch----hhhcCCCcccCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD--SKLGPIFQYLEILGVYHSQSL----LILLPSSSVSFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~--~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
.+.|++|++..|. +..-.... .......++|+.|+++++.-- ..+.. ....+++|++|++++|. +.+....
T Consensus 185 ~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~-i~~~g~~ 261 (344)
T d2ca6a1 185 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCL-LSARGAA 261 (344)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred hhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccc-cccccccchhhhhhcCc-cCchhhH
Confidence 6678888888773 32210000 011334678888888876421 11111 23457888888888874 4432222
Q ss_pred hHHh-----hccCCcEEEEecCC
Q 038160 218 STAK-----TLVRLVKVQVYGCR 235 (270)
Q Consensus 218 ~~~~-----~l~~L~~L~i~~c~ 235 (270)
.++. ..+.|++|+++++.
T Consensus 262 ~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 262 AVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHhhhccCCCCCEEECCCCc
Confidence 2222 12568888888874
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.00051 Score=50.61 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCcccc
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYI 50 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~ 50 (270)
+++|++|++++++++.+.. ++.... .+++|++|++++. .++.+
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~---~~~~~~-~l~~L~~L~Ls~N-~i~~l 106 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDD---MSSIVQ-KAPNLKILNLSGN-ELKSE 106 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSG---GGTHHH-HSTTCCCCCCTTS-CCCCG
T ss_pred CCCCCEeeCCCccccCCch---hHHHHh-hCCcccccccccC-ccccc
Confidence 5666666666666665422 111111 4666666666663 34443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0054 Score=51.58 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=50.7
Q ss_pred CCccEEEEecccccee-cccccccCcccCcCCCccEEEEecCcCccccCC---chhhccccccceeE-------------
Q 038160 4 PNLEALEISAINVDKI-WHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFS---ASMIGNLKQLQHLE------------- 66 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~-~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~------------- 66 (270)
++|++|+++++++... |.. + .+.++++++|++.+|. ++.... ...+..+++|++|+
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~--l----~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~ 74 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAE--L----LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 74 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHH--H----HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCCEEEeeCCcCChHHHHH--H----HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence 3678888888777662 221 1 1267888888888883 442111 12245667777765
Q ss_pred -----------eeeEEeccCCCcceecCC---ccccCCCcccEEEeccCC
Q 038160 67 -----------LTTLRLQGLPKLRCLYPG---MHTSEWPALEILSVHRCD 102 (270)
Q Consensus 67 -----------L~~L~L~~~~~L~~~~~~---~~~~~~~~L~~L~i~~c~ 102 (270)
|++|+++++. ++..... .....+++|++|+++++.
T Consensus 75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 4445555552 3321110 011346778888887764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.0052 Score=51.68 Aligned_cols=89 Identities=20% Similarity=0.116 Sum_probs=53.1
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhh-----cCCCcccCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLIL-----LPSSSVSFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
++++++|++.+| +++....+. .......++|++|+++++. +++. .......-.+|++|++++|. +++....
T Consensus 26 l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~ 102 (460)
T d1z7xw1 26 LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 102 (460)
T ss_dssp HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred CCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence 778899999999 344211000 0112347889999998864 4321 11111123579999999884 6554222
Q ss_pred ---hHHhhccCCcEEEEecCC
Q 038160 218 ---STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 218 ---~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|+++++.
T Consensus 103 ~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 103 VLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHTTSCTTCCEEECCSSB
T ss_pred cccchhhcccccccccccccc
Confidence 223467889999998874
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.049 Score=39.32 Aligned_cols=12 Identities=33% Similarity=0.185 Sum_probs=6.3
Q ss_pred cCcCCcEEEeeC
Q 038160 196 SFRNLAKLVAFG 207 (270)
Q Consensus 196 ~~~~L~~L~i~~ 207 (270)
.+++|+.|++++
T Consensus 89 ~l~~L~~L~Ls~ 100 (162)
T d1koha1 89 KAPNLKILNLSG 100 (162)
T ss_dssp HSTTCCCCCCTT
T ss_pred hCCccccccccc
Confidence 345555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.57 E-value=0.15 Score=36.80 Aligned_cols=89 Identities=8% Similarity=-0.086 Sum_probs=47.5
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhc-CC---CcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILL-PS---SSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~-~~---~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
.++|++|+++++..+..-.... .......++|++|++++|. +.+.. .. .....++|++|++++| ++.+-....
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~ 91 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 91 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-hcchHHHHH
Confidence 5678888888765543211000 0012234678888888764 22211 11 1223577888888877 344432222
Q ss_pred HH---hhccCCcEEEEecC
Q 038160 219 TA---KTLVRLVKVQVYGC 234 (270)
Q Consensus 219 ~~---~~l~~L~~L~i~~c 234 (270)
++ ...++|++|+++++
T Consensus 92 l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCC
Confidence 22 33466888888766
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=83.11 E-value=0.52 Score=33.49 Aligned_cols=89 Identities=13% Similarity=-0.012 Sum_probs=47.3
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchh----hhcCCCcccCcCCcEEEeeCCc-CCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLL----ILLPSSSVSFRNLAKLVAFGCK-ELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~----~~~~~~~~~~~~L~~L~i~~c~-~l~~l~~~ 217 (270)
.++|++|++++| ++..-.... .......++++++++++|.--. .+.. .....++|+.+++..+. .+.+-...
T Consensus 45 n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~ 122 (166)
T d1io0a_ 45 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEM 122 (166)
T ss_dssp CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH-HHHhCccccEEeeccCCCcCcHHHHH
Confidence 667888888888 333211000 0011235678888888764221 1111 23456788887787554 34332111
Q ss_pred ---hHHhhccCCcEEEEecC
Q 038160 218 ---STAKTLVRLVKVQVYGC 234 (270)
Q Consensus 218 ---~~~~~l~~L~~L~i~~c 234 (270)
......+.|++|+++..
T Consensus 123 ~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 123 EIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCcCEEeCcCC
Confidence 22345677788777654
|