Citrus Sinensis ID: 038217
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C7R6 | 729 | U-box domain-containing p | yes | no | 0.993 | 0.973 | 0.719 | 0.0 | |
| Q6EUK7 | 728 | U-box domain-containing p | yes | no | 0.962 | 0.945 | 0.468 | 1e-170 | |
| Q9LZW3 | 674 | U-box domain-containing p | no | no | 0.924 | 0.980 | 0.356 | 1e-106 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.861 | 0.933 | 0.358 | 2e-90 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.809 | 0.916 | 0.361 | 5e-82 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.827 | 0.905 | 0.356 | 6e-80 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.762 | 0.891 | 0.353 | 8e-78 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.745 | 0.768 | 0.357 | 1e-73 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.745 | 0.768 | 0.357 | 1e-73 | |
| Q681N2 | 660 | U-box domain-containing p | no | no | 0.816 | 0.884 | 0.333 | 4e-72 |
| >sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/734 (71%), Positives = 608/734 (82%), Gaps = 24/734 (3%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+AAIFSSLRRRRSPSL+AFLAPVDL+ VALVQTL SISSE+VSCF+ F FQR+N+R
Sbjct: 1 MASAAIFSSLRRRRSPSLEAFLAPVDLSGVALVQTLASISSEVVSCFTSVRFSFQRKNAR 60
Query: 61 SLIRKMEAFLVLLEYLRDSG----------------TCIESTAVLCFKELYLLLYRCKIL 104
SLIRK+E F+VL E+L DS + ESTA+LC KELYLLLYR KIL
Sbjct: 61 SLIRKIEIFVVLFEFLVDSNWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLYRSKIL 120
Query: 105 LDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQAR 164
+DYC QSSKLWLLLQN SISG+FHDLNQEISTLLDV P +D+ LS+D+REQI+L+QRQ+R
Sbjct: 121 VDYCAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSR 180
Query: 165 NAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEE 224
A+L+IDKNDE LR +SFLD FE+G++P+ VDLR FFVE LGI+D+K+CR+EIEFLEE
Sbjct: 181 KARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEE 240
Query: 225 QIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSH-KKRRKGLITQEIAE 283
QIVNH+GD EPT SV+NGFVAI RY RFLLFGFEED E I ++ KK RKG + QEI +
Sbjct: 241 QIVNHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQEIGD 300
Query: 284 TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343
TF+++PKDF CPI LDLM DPVIISTGQTYDR SIARW+EEGH TCPKTGQML+ R+VP
Sbjct: 301 TFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVP 360
Query: 344 NRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGS 403
NRAL+NLIVQWCTA GI Y+ E TD ESFASALP++AAVEAN+AT +LI+ LA+GS
Sbjct: 361 NRALKNLIVQWCTASGISYES-EFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419
Query: 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD 463
A+TVAAREIRLLAKTGKENRA+IA+AGAIPHL LL++ N +AQENSVTAMLNLSIY+
Sbjct: 420 QAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYE 479
Query: 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA 523
KNKSRIM+E CL SIV VL GLT EA+ENAAATLFSLSAVHEYKK+IA VEALA
Sbjct: 480 KNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALA 539
Query: 524 TLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALI 583
LL+ GTPRGKKDAVTAL+NLSTH DNC RMIE G V++LVGAL +EGVAEEAAGALAL+
Sbjct: 540 LLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALL 599
Query: 584 VRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPAL 643
VRQ +GA A+G+E+ AV GL+GMMRCGTPRGKENAVAALLELCRSGGA+ E+VL+APA+
Sbjct: 600 VRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAI 659
Query: 644 VGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPD 703
GLLQ LLFTGTKRARRKAASLARVFQR ENAA+ G Y F GN+ NRD FT D
Sbjct: 660 AGLLQTLLFTGTKRARRKAASLARVFQRRENAAMRSG----VYGFVGNTNGNRDGGFTTD 715
Query: 704 VSVP--MSISVPVL 715
VSVP +SISVPVL
Sbjct: 716 VSVPISISISVPVL 729
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1546), Expect = e-170, Method: Compositional matrix adjust.
Identities = 330/705 (46%), Positives = 466/705 (66%), Gaps = 17/705 (2%)
Query: 20 AFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLE-YLRD 78
AF AP L L++ + S+++ LV+ QRRN +L R++ +LE L D
Sbjct: 30 AFFAPTGLAGATLLRAVASLAASLVAGARPPS---QRRNVDALARRLALLSAILESILLD 86
Query: 79 SGTCIESTAV--LCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEIST 136
+ + LCF+ELY++L+R ++L+ Y + + W LL++ ++ F DL+ E++
Sbjct: 87 TAAAGAFSDAANLCFRELYVVLFRAELLVSYVASAGRAWALLRSPHLAASFRDLDAELAV 146
Query: 137 LLDVFPADDIELSEDVREQIDLMQRQAR---NAKLHIDKNDELLRLRLFSFLDEFEHGRV 193
+LDV PA + LS D +DL++ R A+ H D ++ LR RL L +F+ G+
Sbjct: 147 VLDVLPAASLRLSHDATGLLDLLRAHCRCRAPAQYH-DPDEAALRERLMDALRQFDLGQP 205
Query: 194 PNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFL 253
P+H L+S + +GI A +CRAEI++LEEQI++ E D + ++ +A++RY F
Sbjct: 206 PDHPSLQSLLAD-MGISTAASCRAEIDYLEEQILSQEEDTD--LPLVGSVLALLRYCLFA 262
Query: 254 LFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTY 313
+F +A R++ L +T S+PK+F CPI LDLMRDPV+ STGQTY
Sbjct: 263 VFDPSNAKALRDWPLSGNRQRLLSIGGGDDTSFSVPKEFSCPISLDLMRDPVVASTGQTY 322
Query: 314 DRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDPPETTDVSAE 373
DR SI +W+EEGH TCP +GQ L RLVPNRALR+LI QWC +G+ YD PE+ + AE
Sbjct: 323 DRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQWCGVYGLQYDSPESNEGMAE 382
Query: 374 SFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA 433
A++ SRAA+EAN+ATA +L++ L +GS K VAA+EIRLLAKTGK+NRAFIA GA
Sbjct: 383 CVAASCSSRAAMEANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGA 442
Query: 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARE 493
IP L LL +++ +AQEN+VTA+LNLSI++ NK RIM++EGCL IV VL+ G TTEA+E
Sbjct: 443 IPLLCRLLLSNDWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTEAKE 502
Query: 494 NAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR 553
NAAATLFSLS VH +KK I +E GAVE LA++L GT RGKKDAV ALFNLSTH ++ R
Sbjct: 503 NAAATLFSLSVVHNFKKLIMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESSAR 562
Query: 554 MIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPR 613
M+E+ AV AL+ +L ++ V+EEAAGALAL+++QP VG E +T LVG+MR GTP+
Sbjct: 563 MLESCAVVALIQSLRNDTVSEEAAGALALLMKQPSIVHLVGSSETVITSLVGLMRRGTPK 622
Query: 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673
GKENAV+AL E+CR GG++ +RV K P L ++Q + GTKRA++KA+ + ++ QR +
Sbjct: 623 GKENAVSALYEICRRGGSALVQRVAKIPGLNTVIQTITLNGTKRAKKKASLIVKMCQRSQ 682
Query: 674 -NAALHFGG--LGVGYAFAGNSAANRDSSF-TPDVSVPMSISVPV 714
+A+ G V + GN+ R +SF + ++S P+SISV V
Sbjct: 683 MPSAMALGSTLTVVDRSLVGNNTLRRAASFGSGELSNPISISVQV 727
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/713 (35%), Positives = 383/713 (53%), Gaps = 52/713 (7%)
Query: 8 SSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKME 67
S R+RR + +F +P +D L ++L S E+ S F RRNS SLIRK++
Sbjct: 9 SPARKRRPLVVGSFESPKLSSDTKLTRSLFLASHEISSM--QPLPFILRRNSLSLIRKVK 66
Query: 68 AFLVLLEYL---RDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSIS 124
+ + L R +A LCF+E+ +++ R K L+D C + SKLWLLLQ ++
Sbjct: 67 ILASVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRVSKLWLLLQIDIVA 126
Query: 125 GHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSF 184
+FH+L ++ST+LD+ P D +LS+D ++ I L+ +Q ++ +D D LR ++
Sbjct: 127 FNFHELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQFVDARDVALRRKVTDT 186
Query: 185 LDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFV 244
+ +H P+H L F LG+ D+ + EI+ LE++I + D +A+ +
Sbjct: 187 IAGIKHQISPDHSTLIKIF-NDLGLSDSASLTDEIQRLEDEIQDQIDDRSKSAAA--SLI 243
Query: 245 AIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDP 304
++RYS+ +L+G + RR Q +++ +IP DF CPI L+LMRDP
Sbjct: 244 GLVRYSKCVLYGPSTPAPDF-------RRH----QSLSDA--NIPADFRCPITLELMRDP 290
Query: 305 VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDP 364
V+++TGQTYDR SI W++ GH TCPKTGQ+L H LVPNRAL+NLIV WC IP++
Sbjct: 291 VVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFE- 349
Query: 365 PETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKEN 424
+ + P + AVE + LI++L+ E+R LAK+
Sbjct: 350 -----LYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSNGVVF---ELRALAKSDTVA 401
Query: 425 RAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR 484
RA IA+AGAIP L L+T P Q N+VT +LNLSI ++NK+RIM+ +G L +++VLR
Sbjct: 402 RACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLR 461
Query: 485 FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544
G T EA+ NAAATLFSL+ V Y++++ ++ V L L + G K+DA+ A+ NL
Sbjct: 462 SGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNL 521
Query: 545 STHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTG 602
+N R +EAG ++GA G + + EEA + +VR+ G AV +
Sbjct: 522 VAERENVGRFVEAG----VMGAAGDAFQELPEEAVAVVEAVVRRG-GLMAVSAAFSLIRL 576
Query: 603 LVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKA 662
L +MR G +E+A A L+ +CR GG+ + P + ++ ++ GT R RKA
Sbjct: 577 LGEVMREGADTTRESAAATLVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGTARGGRKA 636
Query: 663 ASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISVPVL 715
ASL R +R H N+AA S P P I PVL
Sbjct: 637 ASLMRYLRRWAAGDTH------------NTAAETQSIVVP---TPSRIFSPVL 674
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 230/642 (35%), Positives = 341/642 (53%), Gaps = 26/642 (4%)
Query: 34 QTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKE 93
Q+L+ + +E+ + R ++ +L R+++ + + E +R+S I +
Sbjct: 10 QSLIDVVNEIAAISDYRITV--KKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMN 67
Query: 94 LYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVR 153
L + K L +C Q SK++L+++ ++ +++ ++ L P +++++S++VR
Sbjct: 68 LKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVR 127
Query: 154 EQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAK 213
EQ++L+ Q R AK +D +D+ L L S ++ V + + + L + +
Sbjct: 128 EQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNK--SSDVDAYQPVLERVAKKLHLMEIP 185
Query: 214 TCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRR 273
E L E + + GD + +++ + + +++ E +G + R
Sbjct: 186 DLAQESVALHEMVASSGGD---VGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNS-RS 241
Query: 274 KGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333
G + ++ IP DF CPI L++MRDPVI+S+GQTY+R I +W+E GH TCPKT
Sbjct: 242 NGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQ 301
Query: 334 QMLVHDRLVPNRALRNLIVQWCTAHGI-PYDPPET-TDVSAESFASALPSRAAVEANRAT 391
Q L L PN LR+LI QWC A+ I P PP + SF+S EAN+
Sbjct: 302 QALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSS------PAEANK-- 353
Query: 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN 451
E L+ +LA G+P + AA EIRLLAK +NR IA+AGAIP L LLST + QE+
Sbjct: 354 IEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEH 413
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
SVTA+LNLSI + NK I+ G + IV+VL+ G + EARENAAATLFSLS + E K
Sbjct: 414 SVTALLNLSICENNKGAIVS-AGAIPGIVQVLKKG-SMEARENAAATLFSLSVIDENKVT 471
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH-- 569
I GA+ L LL GT RGKKDA TALFNL + N + I AG + L L
Sbjct: 472 IG-ALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPG 530
Query: 570 EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629
G+ +EA LA++ P G A +G + AV LV +R G+PR +ENA A L+ LC SG
Sbjct: 531 SGMVDEALAILAILSSHPEGKAIIGSSD-AVPSLVEFIRTGSPRNRENAAAVLVHLC-SG 588
Query: 630 GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671
K L+G L L GT R +RKAA L R
Sbjct: 589 DPQHLVEAQKL-GLMGPLIDLAGNGTDRGKRKAAQLLERISR 629
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 226/626 (36%), Positives = 331/626 (52%), Gaps = 47/626 (7%)
Query: 62 LIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNH 121
L+R++ E L D ++ + F+ + + L L SKL+ L
Sbjct: 40 LVRRITLLSPFFEELIDVNVELKKDQITGFEAMRIALDSSLELFRSVNGGSKLFQLFDRD 99
Query: 122 SISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRL 181
S+ F D+ EI L P + IE+SE+VREQ+ L+ Q + AK +++D L+L
Sbjct: 100 SLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESD----LQL 155
Query: 182 FSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDA----EPTA 237
L E+ P+ + L+ E L + + E + E ++++GD E +
Sbjct: 156 SHDLAMAENVMDPDPIILKRLSQE-LQLTTIDELKKESHAIHEYFLSYDGDPDDCFERMS 214
Query: 238 SVLNGFVAIMRYSRFLLFGFEEDEAELGIGSH-KKRRKGLITQEIAETFLSIPKDFCCPI 296
S+L V + E + + GS R + + IP+ F CPI
Sbjct: 215 SLLKNLVDFVT--------MESSDPDPSTGSRIVSRHRSPV----------IPEYFRCPI 256
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356
L+LM+DPVI+STGQTY+R SI +W++ GH+TCPK+ + L+H L PN L++LI WC
Sbjct: 257 SLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 316
Query: 357 AHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRL 416
++GI E + + ++ + +R L+++LANG+ + AA E+RL
Sbjct: 317 SNGI-----ELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRL 371
Query: 417 LAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476
LAK +NR IA+AGAIP L LLS+ +P QE+SVTA+LNLSI + NK I+D G +
Sbjct: 372 LAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVD-AGAI 430
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536
IV+VL+ G + EARENAAATLFSLS + E K +GA++AL +LL GT RGKKD
Sbjct: 431 TDIVEVLKNG-SMEARENAAATLFSLSVIDE-NKVAIGAAGAIQALISLLEEGTRRGKKD 488
Query: 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVG 594
A TA+FNL + N R ++ G V L L G+ +EA LA++ G A+
Sbjct: 489 AATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIA 548
Query: 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVG---LLQALL 651
E E ++ LV ++R G+PR +ENA A L LC ER L VG L+ L
Sbjct: 549 EAE-SIPVLVEIIRTGSPRNRENAAAILWYLC----IGNIER-LNVAREVGADVALKELT 602
Query: 652 FTGTKRARRKAASLARVFQRCENAAL 677
GT RA+RKAASL + Q+ E A+
Sbjct: 603 ENGTDRAKRKAASLLELIQQTEGVAV 628
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 222/622 (35%), Positives = 329/622 (52%), Gaps = 30/622 (4%)
Query: 72 LLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLN 131
+LE +RD+ S V + L K LL + SK++L+L+ + F +
Sbjct: 47 MLEEIRDNQES-SSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVT 105
Query: 132 QEISTLLDVFPADDIELSEDVREQIDLMQRQARNA--KLHID-KNDELLR--LRLFSFLD 186
+ L + P +++E+S++++EQ++L+ Q R + K D +DEL + L L+S
Sbjct: 106 SLLEQALSIIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSG-- 163
Query: 187 EFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAI 246
G V D+ E L + E L + + + GD +P S + +
Sbjct: 164 ---RGSV-MESDMVRRVAEKLQLMTITDLTQESLALLDMVSSSGGD-DPGESFEKMSMVL 218
Query: 247 MRYSRFL-LFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPV 305
+ F+ + D+A L + S + +++ L P++F CPI L+LM DPV
Sbjct: 219 KKIKDFVQTYNPNLDDAPLRLKSSLPK-----SRDDDRDMLIPPEEFRCPISLELMTDPV 273
Query: 306 IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDPP 365
I+S+GQTY+R I +W+E GH TCPKT + L D + PN LR+LI QWC ++GI +PP
Sbjct: 274 IVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGI--EPP 331
Query: 366 ETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENR 425
+ ++S S ++ S A + + ELL+ +L + P + AA EIRLLAK NR
Sbjct: 332 KRPNISQPSSKASSSSSAPDDEHNKIEELLL-KLTSQQPEDRRSAAGEIRLLAKQNNHNR 390
Query: 426 AFIAKAGAIPHLRNLLSTHNPV-AQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR 484
IA +GAIP L NLL+ N QE++VT++LNLSI +NK +I+ G + IV VL+
Sbjct: 391 VAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQ 450
Query: 485 FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544
G + EARENAAATLFSLS + E K I +GA+ L TLL G+ RGKKDA TALFNL
Sbjct: 451 KG-SMEARENAAATLFSLSVIDENKVTIG-AAGAIPPLVTLLSEGSQRGKKDAATALFNL 508
Query: 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTG 602
N + + AG V L+ L G+ +E+ LA++ P G + VG + AV
Sbjct: 509 CIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAAD-AVPV 567
Query: 603 LVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKA 662
LV +R G+PR KEN+ A L+ LC E + ++ LL + GT R +RKA
Sbjct: 568 LVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEA--QKLGIMDLLIEMAENGTDRGKRKA 625
Query: 663 ASLARVFQRCENAALHFGGLGV 684
A L F R + GLG+
Sbjct: 626 AQLLNRFSRFNDQQKQHSGLGL 647
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 206/582 (35%), Positives = 309/582 (53%), Gaps = 37/582 (6%)
Query: 104 LLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQA 163
LL SK+ ++ + F +N++I LD P + + ++V+EQ+ L+ Q
Sbjct: 62 LLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQF 121
Query: 164 RNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLE 223
+ A D D L + L L + P+ L + L + + E L
Sbjct: 122 QRASTRTDPPDTQLSMDLAWALTDN-----PSDPALLTRISHKLQLHTMADMKNESIALH 176
Query: 224 EQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAE 283
+++ G EP V + ++++ + + + L S + + I
Sbjct: 177 NMVISTAG--EPDGCV-DQMSSLLKKLKDCVVTEDHANDALTTRSASIKHRSPI------ 227
Query: 284 TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343
IP +F CPI L+LM+DPVI+S+GQTY+R I +W++ GH+TCPKT Q L H L P
Sbjct: 228 ----IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTP 283
Query: 344 NRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGS 403
N L++LI QWC A+GI P+ S + A+ + + + A L+ +L +G+
Sbjct: 284 NFVLKSLISQWCEANGIEL--PKNKQNSRDKKAA-----KSSDYDHAGLVSLMNRLRSGN 336
Query: 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD 463
+ AA EIRLLAK NR IA+AGAIP L NLLS+ +P QE++VTA+LNLSI++
Sbjct: 337 QDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHE 396
Query: 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA 523
NK+ I+D + IV+VL+ G + E RENAAATLFSLS V E K I +GA+ L
Sbjct: 397 NNKASIVDSHA-IPKIVEVLKTG-SMETRENAAATLFSLSVVDENKVTIG-AAGAIPPLI 453
Query: 524 TLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALA 581
LL G+PRGKKDA TA+FNL + N VR ++AG V L+ L G+ +EA L+
Sbjct: 454 NLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLS 513
Query: 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVL--K 639
++ P G + E + LV +++ G+PR +ENA A L LC ++ TE+ L K
Sbjct: 514 ILAGNPEGKIVIARSE-PIPPLVEVIKTGSPRNRENAAAILWLLC----SADTEQTLAAK 568
Query: 640 APALVGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGG 681
A + L+ L TGT RA+RKA+S+ + + +L G
Sbjct: 569 AAGVEDALKELSETGTDRAKRKASSILELMHQANEDSLKGNG 610
|
Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 204/570 (35%), Positives = 300/570 (52%), Gaps = 37/570 (6%)
Query: 110 QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLH 169
+ S++ L+L+ S+ F + ++ L P +++++S++VREQ++L+ Q + AK
Sbjct: 106 EGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKER 165
Query: 170 IDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNH 229
ID D+ L S D+ + + E L + E L E + +
Sbjct: 166 IDMPDDEFYNDLLSVYDKNYDPSA--ELAILGRLSEKLHLMTITDLTQESLALHEMVASG 223
Query: 230 EGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIP 289
G +P + + + + F+ + ++G + ++ ++IP
Sbjct: 224 -GGQDPGEHIERMSMLLKKIKDFV----QTQNPDMGPPMASR----VLDSNGDSRPITIP 274
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRN 349
+F CPI L+LM+DPVI+STGQTY+R I +W+ GH TCP T Q + L PN LR+
Sbjct: 275 DEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRS 334
Query: 350 LIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTV 409
LI QWC +G+ +PP+ S P+ A + RA + L+ +L + +
Sbjct: 335 LISQWCETNGM--EPPK------RSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRS 386
Query: 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469
AA E+RLLAK NR IA+AGAIP L +LLS+ + QE++VTA+LNLSI++ NK+ I
Sbjct: 387 AAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASI 446
Query: 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG 529
+ G + SIV VL+ G + EARENAAATLFSLS + EYK I GA+ AL LL G
Sbjct: 447 IS-SGAVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIGG-MGAIPALVVLLGEG 503
Query: 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQP 587
+ RGKKDA ALFNL + N R I AG V ++G + + + +EA L+++ P
Sbjct: 504 SQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHP 563
Query: 588 IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG------ASATERVLKAP 641
G AA+G E V LV M+ GTPR +ENA A +L LC SG A A E + P
Sbjct: 564 EGKAAIGAAE-PVPVLVEMIGSGTPRNRENAAAVMLHLC-SGEHHLVHLARAQECGIMVP 621
Query: 642 ALVGLLQALLFTGTKRARRKAASLARVFQR 671
L+ L GT R +RKA L R
Sbjct: 622 -----LRELALNGTDRGKRKAVQLLERMSR 646
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 204/570 (35%), Positives = 300/570 (52%), Gaps = 37/570 (6%)
Query: 110 QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLH 169
+ S++ L+L+ S+ F + ++ L P +++++S++VREQ++L+ Q + AK
Sbjct: 106 EGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKER 165
Query: 170 IDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNH 229
ID D+ L S D+ + + E L + E L E + +
Sbjct: 166 IDMPDDEFYNDLLSVYDKNYDPSA--ELAILGRLSEKLHLMTITDLTQESLALHEMVASG 223
Query: 230 EGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIP 289
G +P + + + + F+ + ++G + ++ ++IP
Sbjct: 224 -GGQDPGEHIERMSMLLKKIKDFV----QTQNPDMGPPMASR----VLDSNGDSRPITIP 274
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRN 349
+F CPI L+LM+DPVI+STGQTY+R I +W+ GH TCP T Q + L PN LR+
Sbjct: 275 DEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRS 334
Query: 350 LIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTV 409
LI QWC +G+ +PP+ S P+ A + RA + L+ +L + +
Sbjct: 335 LISQWCETNGM--EPPK------RSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRS 386
Query: 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469
AA E+RLLAK NR IA+AGAIP L +LLS+ + QE++VTA+LNLSI++ NK+ I
Sbjct: 387 AAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASI 446
Query: 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG 529
+ G + SIV VL+ G + EARENAAATLFSLS + EYK I GA+ AL LL G
Sbjct: 447 IS-SGAVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIGG-MGAIPALVVLLGEG 503
Query: 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQP 587
+ RGKKDA ALFNL + N R I AG V ++G + + + +EA L+++ P
Sbjct: 504 SQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHP 563
Query: 588 IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG------ASATERVLKAP 641
G AA+G E V LV M+ GTPR +ENA A +L LC SG A A E + P
Sbjct: 564 EGKAAIGAAE-PVPVLVEMIGSGTPRNRENAAAVMLHLC-SGEHHLVHLARAQECGIMVP 621
Query: 642 ALVGLLQALLFTGTKRARRKAASLARVFQR 671
L+ L GT R +RKA L R
Sbjct: 622 -----LRELALNGTDRGKRKAVQLLERMSR 646
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 218/653 (33%), Positives = 348/653 (53%), Gaps = 69/653 (10%)
Query: 41 SELVSC--FSDRCFFFQRRNSR---SLIRKMEAFLVLLEYLR--DSGTCIESTAVLCFKE 93
S++VS F D+ ++R + +L+R+++ + L+ +R +S +C
Sbjct: 55 SDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCKH-----FLNR 109
Query: 94 LYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVR 153
L + K LL+ C SK+++ L ++ FH + ++++ +L P D++ +S D +
Sbjct: 110 LRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAK 169
Query: 154 EQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLG----- 208
++ID + +Q + AK D D L + + + + P + D S +E L
Sbjct: 170 DEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTD----PRNAD--SAIIERLAKKLEL 223
Query: 209 --IKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGI 266
I D KT I+ L + +G LN + ++ LL F++ + G+
Sbjct: 224 QTIDDLKTETIAIQSL----IQDKGG-------LN--IETKQHIIELLNKFKKLQ---GL 267
Query: 267 GSHKKRRKGLITQEIAE-TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG 325
+ + +I + I + T L +P +F CPI L++M DPVII+TGQTY++ SI +W + G
Sbjct: 268 EATDILYQPVINKAITKSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAG 327
Query: 326 HRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAV 385
H+TCPKT Q L H L PN AL+NLI+QWC + + PE +VS +S
Sbjct: 328 HKTCPKTRQELDHLSLAPNFALKNLIMQWCEKNN--FKIPE-KEVSPDS----------Q 374
Query: 386 EANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN 445
+ LL++ L++ + + +++RLLA+ ENR IA AGAIP L LLS +
Sbjct: 375 NEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPD 434
Query: 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505
QEN+VT +LNLSI + NK +++ EG + +I+++L G EAREN+AA LFSLS +
Sbjct: 435 SGIQENAVTTLLNLSIDEVNK-KLISNEGAIPNIIEILENG-NREARENSAAALFSLSML 492
Query: 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAV--TAL 563
E K I +G + L LL+ GT RGKKDA+TALFNLS ++ N R I+AG V
Sbjct: 493 DENKVTIGLSNG-IPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLN 551
Query: 564 VGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623
+ + G+ +EA L L+ P G A+G+ T LV +R GTP+ KE A + LL
Sbjct: 552 LLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFIET-LVEFIRQGTPKNKECATSVLL 610
Query: 624 ELCRSGGASATERVLKAPALVGLLQALL---FTGTKRARRKAASLARVFQRCE 673
EL G++ + +L A G+ + L+ +GT RA+RKA +L ++ + E
Sbjct: 611 EL----GSNNSSFILAALQF-GVYEYLVEITTSGTNRAQRKANALIQLISKSE 658
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| 255562520 | 719 | ubiquitin-protein ligase, putative [Rici | 1.0 | 0.994 | 0.830 | 0.0 | |
| 356549180 | 716 | PREDICTED: U-box domain-containing prote | 0.995 | 0.994 | 0.791 | 0.0 | |
| 356555449 | 716 | PREDICTED: U-box domain-containing prote | 0.995 | 0.994 | 0.795 | 0.0 | |
| 357447093 | 737 | U-box domain-containing protein [Medicag | 0.997 | 0.967 | 0.778 | 0.0 | |
| 225443720 | 714 | PREDICTED: U-box domain-containing prote | 0.998 | 1.0 | 0.788 | 0.0 | |
| 224116780 | 675 | predicted protein [Populus trichocarpa] | 0.941 | 0.997 | 0.831 | 0.0 | |
| 30013679 | 726 | Avr9/Cf-9 rapidly elicited protein 276 [ | 1.0 | 0.984 | 0.758 | 0.0 | |
| 217074982 | 692 | unknown [Medicago truncatula] | 0.962 | 0.994 | 0.776 | 0.0 | |
| 449500790 | 715 | PREDICTED: U-box domain-containing prote | 1.0 | 1.0 | 0.762 | 0.0 | |
| 449459308 | 715 | PREDICTED: U-box domain-containing prote | 1.0 | 1.0 | 0.760 | 0.0 |
| >gi|255562520|ref|XP_002522266.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223538519|gb|EEF40124.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/719 (83%), Positives = 656/719 (91%), Gaps = 4/719 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+AAIFSSLRRRRSPSL+AFLAPVDLTDVALVQTL+S+S+ELV+CFS + FFQR+NSR
Sbjct: 1 MASAAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVSTELVACFSGKSMFFQRKNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDSG----TCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWL 116
SLIRK+E F+VLLEYL +SG T + ST ++CFKELYLLLYR KILLDYC QSSKLWL
Sbjct: 61 SLIRKIEFFVVLLEYLTESGIGSSTKLSSTGIVCFKELYLLLYRSKILLDYCTQSSKLWL 120
Query: 117 LLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDEL 176
LLQN SISGHFHDLNQEISTLLDVFP +DIELSEDVREQI+LMQ+QAR A+L+ID+ DE
Sbjct: 121 LLQNQSISGHFHDLNQEISTLLDVFPLNDIELSEDVREQIELMQKQARKARLYIDEKDEA 180
Query: 177 LRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPT 236
LR++LFSFLDEFE+GR+PN VDLR FFV+ LGI DAK+CRAEIEFLEEQIVNHEGD EPT
Sbjct: 181 LRVKLFSFLDEFENGRIPNLVDLRLFFVDSLGIGDAKSCRAEIEFLEEQIVNHEGDIEPT 240
Query: 237 ASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPI 296
ASVLNG VAI RY RFLLFGFEE+EAEL G+ KK RKGLITQEIA+TF+++PKDFCCPI
Sbjct: 241 ASVLNGLVAITRYCRFLLFGFEENEAELQFGNQKKPRKGLITQEIADTFITVPKDFCCPI 300
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356
LDLM+DPVIISTGQTYDR SI+RW+EEGH TCPKTGQML++ R VPNRALRNLIVQWCT
Sbjct: 301 SLDLMKDPVIISTGQTYDRSSISRWVEEGHCTCPKTGQMLINTRFVPNRALRNLIVQWCT 360
Query: 357 AHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRL 416
AHGIPY+PPE TD SAE FA+A P++AA+EANRATA LLIQQLANGS AKT AAREIRL
Sbjct: 361 AHGIPYEPPENTDSSAEGFAAASPTKAAIEANRATATLLIQQLANGSQNAKTTAAREIRL 420
Query: 417 LAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476
LAKTGKENRAFIA+AGAIPHLRNLLS+ NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL
Sbjct: 421 LAKTGKENRAFIAEAGAIPHLRNLLSSPNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 480
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536
GSIV+VLRFGLTTEARENAAATLFSLSAVH+YKK+IADE GA+EALA LL +GT RGKKD
Sbjct: 481 GSIVEVLRFGLTTEARENAAATLFSLSAVHDYKKRIADEGGAIEALAGLLGVGTSRGKKD 540
Query: 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEE 596
AVTALFNLSTHT+NC RMI+AGAVTALVGALG+EGVAEEAAGALALIVRQP+GA AVG E
Sbjct: 541 AVTALFNLSTHTENCARMIKAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVGSE 600
Query: 597 EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK 656
EMAV GL+GMMRCG+PRGKENAVAALLELCRSGGA+ATERVL+AP L GL+Q LLFTGTK
Sbjct: 601 EMAVAGLIGMMRCGSPRGKENAVAALLELCRSGGAAATERVLRAPTLAGLIQTLLFTGTK 660
Query: 657 RARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISVPVL 715
RARRKAASLARVFQR EN ALHFGGLG GYAFAGNSA RD+SF DVSVPMSISVPVL
Sbjct: 661 RARRKAASLARVFQRRENHALHFGGLGAGYAFAGNSATTRDTSFVGDVSVPMSISVPVL 719
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549180|ref|XP_003542975.1| PREDICTED: U-box domain-containing protein 17-like isoform 1 [Glycine max] gi|356549182|ref|XP_003542976.1| PREDICTED: U-box domain-containing protein 17-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/715 (79%), Positives = 625/715 (87%), Gaps = 3/715 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+ AIFSSLRRRRSP+L+AFLAPVDL+DVALVQTL+S+++E+VSCFS R FFFQR+NSR
Sbjct: 1 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLISVANEIVSCFSKRSFFFQRKNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDS---GTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLL 117
SLIRK+E F +LLEYLRDS +C+ TAVLC KELYLLLYR KILLDYC QSSKLWLL
Sbjct: 61 SLIRKVEVFQLLLEYLRDSQSGSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLL 120
Query: 118 LQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELL 177
LQNHSISGHFHDLNQEISTL+DVFP D+ LS+DVREQ++L+Q+Q+R AKL ID D+ L
Sbjct: 121 LQNHSISGHFHDLNQEISTLMDVFPVKDVLLSKDVREQVELLQKQSRRAKLFIDMKDDAL 180
Query: 178 RLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTA 237
RLR FSFLDEFE+G +P+ +L SF+VE L I DA +CR EIE LEEQIVNHEGD EPT
Sbjct: 181 RLRFFSFLDEFENGGIPDSAELGSFYVEKLQIVDAASCRTEIEGLEEQIVNHEGDIEPTI 240
Query: 238 SVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIM 297
SVLNG VA+ RY RFLLFGFEEDE GS KK ++ LITQEIAETFL++PKDFCCPI
Sbjct: 241 SVLNGLVAMTRYCRFLLFGFEEDELGFESGSQKKPKRRLITQEIAETFLTVPKDFCCPIS 300
Query: 298 LDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTA 357
LDLMRDPVIISTGQTYDR SI+RWMEEGH TCPKTGQML H RLVPNRALRNLIV+WCTA
Sbjct: 301 LDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVKWCTA 360
Query: 358 HGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLL 417
HG+P +PPE D E F SA P++AA+EANRATA LLIQQLA GS KTVAAREIRLL
Sbjct: 361 HGVPLEPPEVMDAMGEVFPSACPTKAALEANRATATLLIQQLAGGSQAGKTVAAREIRLL 420
Query: 418 AKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLG 477
AKTGKENRAFIA+AGAIP+LRNLLS+ N VAQENSVTA+LNLSI+DKNKSRIMDEEGCLG
Sbjct: 421 AKTGKENRAFIAEAGAIPYLRNLLSSRNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLG 480
Query: 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537
SIV VLRFG TTEA+ENAAATLFSLSAVH+YKK IADE AVEALA LL+ GTPRGKKDA
Sbjct: 481 SIVDVLRFGHTTEAKENAAATLFSLSAVHDYKKIIADEMRAVEALAGLLQEGTPRGKKDA 540
Query: 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEE 597
VTALFNLSTHT+NCVRMIEAGAVTALV ALG+EGV+EEAAGALALIVRQPIGA AV EE
Sbjct: 541 VTALFNLSTHTENCVRMIEAGAVTALVSALGNEGVSEEAAGALALIVRQPIGAKAVVNEE 600
Query: 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKR 657
AV GL+GMMRCGTPRGKENAVAA+LELCRSGGA+ATERV+KAPAL LLQ LLFTGTKR
Sbjct: 601 SAVAGLIGMMRCGTPRGKENAVAAMLELCRSGGAAATERVVKAPALARLLQTLLFTGTKR 660
Query: 658 ARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISV 712
ARRKAASLARVFQRCE+A LH+GGLGVGYAFA NS RD+SF DVSVPMSISV
Sbjct: 661 ARRKAASLARVFQRCEHATLHYGGLGVGYAFASNSNTTRDTSFAGDVSVPMSISV 715
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555449|ref|XP_003546044.1| PREDICTED: U-box domain-containing protein 17-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/715 (79%), Positives = 632/715 (88%), Gaps = 3/715 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+ AIFSSLRRRRSP+L+AFLAPVDL+ VALVQTL+S+++E+VSCFS RCFFFQR+NSR
Sbjct: 1 MASGAIFSSLRRRRSPTLEAFLAPVDLSAVALVQTLISVANEIVSCFSKRCFFFQRKNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDS---GTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLL 117
SLIRK+E F +LLEYLRDS +C+ TAVLC KELYLLLYR KILLDYC QSSKLWLL
Sbjct: 61 SLIRKVEVFQLLLEYLRDSDSRSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLL 120
Query: 118 LQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELL 177
LQNHSIS HFHDLNQEIST++DVFP D+ LS+DVREQ++L+Q+Q+R AKL ID D+ L
Sbjct: 121 LQNHSISAHFHDLNQEISTIMDVFPVKDVLLSKDVREQVELLQKQSRRAKLFIDMKDDAL 180
Query: 178 RLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTA 237
R+R FSFLDEFE+GR+P+ +LRSF+VE L I DA +CR+EIE LEEQIVNHEGD EPT
Sbjct: 181 RVRFFSFLDEFENGRLPDSAELRSFYVEKLQIVDAASCRSEIEGLEEQIVNHEGDIEPTI 240
Query: 238 SVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIM 297
SVLNG VA+ RY RFLLFGFEEDE GSHKK ++ LITQEIAETFL++PKDFCCPI
Sbjct: 241 SVLNGLVAMTRYCRFLLFGFEEDELGFERGSHKKPKRRLITQEIAETFLTVPKDFCCPIS 300
Query: 298 LDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTA 357
LDLMRDPVIISTGQTYDR SI+RWMEEGH TCPKTGQ+L H RLV NRALRNLIVQWCTA
Sbjct: 301 LDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQILAHTRLVLNRALRNLIVQWCTA 360
Query: 358 HGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLL 417
HG+P +PPE TD E+F SA PS+AA+EANRATA LLIQQLA GS KTVAAREIRLL
Sbjct: 361 HGVPLEPPEVTDAMGEAFPSACPSKAALEANRATATLLIQQLAGGSQAGKTVAAREIRLL 420
Query: 418 AKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLG 477
AKTGKENRAFIA+AGAIP+LRNLLS+ N VAQENSVTA+LNLSI+DKNKSRIMDEEGCLG
Sbjct: 421 AKTGKENRAFIAEAGAIPYLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLG 480
Query: 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537
SIV VLRFG TTEA+ENAAATLFSLSAVH+YKK IA E GAVEALA LL+ GTPRGKKDA
Sbjct: 481 SIVDVLRFGHTTEAKENAAATLFSLSAVHDYKKIIAGEIGAVEALAGLLQEGTPRGKKDA 540
Query: 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEE 597
VTALFNLSTHT+NCVRMIEAGAVTALVGALG+EGVAEEAAGALALIVRQPIGA AV EE
Sbjct: 541 VTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVNEE 600
Query: 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKR 657
AV GL+GMMRCGTPRGKEN VAALLELCRSGGA+ATERV+KAPAL GLLQ LLFTGTKR
Sbjct: 601 SAVAGLIGMMRCGTPRGKENVVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKR 660
Query: 658 ARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISV 712
ARRKAASLARVFQRCE+A++H+GGLG+GYAFAGNS RD+SF DVSVPMSISV
Sbjct: 661 ARRKAASLARVFQRCEHASVHYGGLGIGYAFAGNSTTTRDTSFAGDVSVPMSISV 715
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447093|ref|XP_003593822.1| U-box domain-containing protein [Medicago truncatula] gi|355482870|gb|AES64073.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/718 (77%), Positives = 627/718 (87%), Gaps = 5/718 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+ AIFSSLRRRRSP+L+AFLAPVDL+DVALVQTL+++ +ELV CFS R FFFQR+N+R
Sbjct: 1 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVCCFSKRSFFFQRKNTR 60
Query: 61 SLIRKMEAFLVLLEYLRDSGT----CIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWL 116
SLIRK+E F VLLEYL DSG+ + +T +LC KELYLLLYR KILLDYC QSSKLWL
Sbjct: 61 SLIRKVEVFQVLLEYLNDSGSGSGSVLPATGLLCLKELYLLLYRSKILLDYCAQSSKLWL 120
Query: 117 LLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDEL 176
LLQNHSISGHFHDLNQEISTLLDVFP D+ LS+DVREQI+L+ +Q+R AKL ID D+
Sbjct: 121 LLQNHSISGHFHDLNQEISTLLDVFPVKDVCLSKDVREQIELLLKQSRRAKLFIDMEDDA 180
Query: 177 LRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPT 236
LR+R F FLD+FE+GR+P+ +LRSF+V+ L I DA CR EIE LEEQIVNHEGD EPT
Sbjct: 181 LRVRFFEFLDQFENGRIPDSEELRSFYVDKLQIMDAACCRTEIEALEEQIVNHEGDIEPT 240
Query: 237 ASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPI 296
SVL G VA+ RY RFL+FGFEEDE ++ GS KK +KGLITQEIA+TFL++PKDFCCPI
Sbjct: 241 VSVLKGLVAMTRYCRFLIFGFEEDELDMENGSQKKIKKGLITQEIADTFLTVPKDFCCPI 300
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356
LDLMRDPVIISTGQTYDR SI+RWM+EGH TCPKTGQ L H RLVPNRALRNLIVQWC+
Sbjct: 301 SLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCS 360
Query: 357 AHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRL 416
AHGIP +PPE + E+FASA P++AA+EANRATA LLIQQLANGS KTVAAREIRL
Sbjct: 361 AHGIPLEPPEVMEAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTVAAREIRL 420
Query: 417 LAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476
LAKTG+ENRAF+A+AGAIP+LR+LLS+ N VAQENSVTA+LNLSIYDKNKSRIMDE CL
Sbjct: 421 LAKTGRENRAFLAEAGAIPYLRDLLSSPNSVAQENSVTALLNLSIYDKNKSRIMDEASCL 480
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536
SIV VLRFG TTEARENAAATLFSLSAVH+YKK IADE+GAVEALA LL+ GTPRGKKD
Sbjct: 481 VSIVNVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRGKKD 540
Query: 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEE 596
AVTALFNLSTHTDNCVRMIEAGAVTALV ALG+EGVAEEAAGA+ALIVRQP GA A+ +
Sbjct: 541 AVTALFNLSTHTDNCVRMIEAGAVTALVEALGNEGVAEEAAGAIALIVRQPFGAKALVNQ 600
Query: 597 EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK 656
E AV GL+GMMRCGTPRGKENAVAALLELCRSGG++ATERV+KAPA+ GLLQ LLFTGTK
Sbjct: 601 EEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPAIAGLLQTLLFTGTK 660
Query: 657 RARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTP-DVSVPMSISVP 713
RARRKAASLARVFQRCENA+LH+GGLGVGYAFA NSA RDSSF DVSVPMSISVP
Sbjct: 661 RARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDSSFAAGDVSVPMSISVP 718
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443720|ref|XP_002267576.1| PREDICTED: U-box domain-containing protein 17 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/715 (78%), Positives = 633/715 (88%), Gaps = 1/715 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+AAI SSLRRRRSPSL+AFLAPVDL +VALV+TL +IS EL+ FSDR + FQR+NSR
Sbjct: 1 MASAAIVSSLRRRRSPSLEAFLAPVDLNEVALVRTLATISMELIFAFSDRPWPFQRKNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQN 120
SLIRK+E FLVLLE+LRD + S AVLCFKELYLLLYR KILLDYC QSSKLWLLLQN
Sbjct: 61 SLIRKIEVFLVLLEFLRDCNLSLPSAAVLCFKELYLLLYRSKILLDYCLQSSKLWLLLQN 120
Query: 121 HSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLR 180
SISGHFHDLNQEISTLLDVFP +++EL+ED+REQ++L+Q+Q R AKL +DKNDE LRLR
Sbjct: 121 QSISGHFHDLNQEISTLLDVFPMEELELTEDIREQLELLQKQVRRAKLFLDKNDEGLRLR 180
Query: 181 LFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVL 240
L+SFLD+F GR+P+ V+LR FFV+ LGI+DAK+CRAEIEFLEEQI +HEGD EP +VL
Sbjct: 181 LYSFLDDFGSGRIPDPVELRLFFVDRLGIRDAKSCRAEIEFLEEQIYSHEGDVEPNVAVL 240
Query: 241 NGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDL 300
NGFVA+ RY RFLLFGFEE E E+ G KK RKGLITQEI +TF+++PKDFCCPI LD+
Sbjct: 241 NGFVALTRYCRFLLFGFEESEVEMSFGI-KKPRKGLITQEIGDTFITVPKDFCCPISLDV 299
Query: 301 MRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360
MRDPVIISTGQTYDR SI+RWMEEGH +CPKTGQML H RLVPNRALRNLI QWCTA+GI
Sbjct: 300 MRDPVIISTGQTYDRTSISRWMEEGHCSCPKTGQMLAHPRLVPNRALRNLITQWCTAYGI 359
Query: 361 PYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKT 420
DPP++ D E+FA+ALP++AA+EAN+ATA LL+QQLA+GS AKTVAAREIRLLAKT
Sbjct: 360 TLDPPDSPDSVVETFAAALPTKAAIEANKATAALLVQQLASGSQGAKTVAAREIRLLAKT 419
Query: 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIV 480
GKENRA+IA+AGAIPHL LLS+ N VAQENSVTAMLNLSIYDKNKSRIMDE+GCLG IV
Sbjct: 420 GKENRAYIAEAGAIPHLLKLLSSPNSVAQENSVTAMLNLSIYDKNKSRIMDEDGCLGLIV 479
Query: 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540
+VL FG TTEARENAAATLFSLSAVH+YKK+IADE GAVEALA LLR GTPRG+KDAVTA
Sbjct: 480 EVLIFGHTTEARENAAATLFSLSAVHDYKKRIADEGGAVEALAGLLREGTPRGRKDAVTA 539
Query: 541 LFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600
LFNLSTHTDNC RM+ +GAVTALV ALG EGVAEEAAGALALIVR+PIGA AVG EEMAV
Sbjct: 540 LFNLSTHTDNCARMVASGAVTALVAALGTEGVAEEAAGALALIVRRPIGAEAVGREEMAV 599
Query: 601 TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660
GL+GMMRCGTPRGKENAVAALLELCRSGG +ATERVLKAPAL GLLQ LLFTGTKRARR
Sbjct: 600 AGLLGMMRCGTPRGKENAVAALLELCRSGGTAATERVLKAPALAGLLQTLLFTGTKRARR 659
Query: 661 KAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISVPVL 715
KAASLARVFQRCENAALHFGGLGVGYAFA NS+AN D+SF+ +VS+ M ISVPVL
Sbjct: 660 KAASLARVFQRCENAALHFGGLGVGYAFARNSSANTDASFSSEVSMQMPISVPVL 714
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116780|ref|XP_002317390.1| predicted protein [Populus trichocarpa] gi|222860455|gb|EEE98002.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/675 (83%), Positives = 613/675 (90%), Gaps = 2/675 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA AAIFSSLRRRRSPSL+AFLAPVDLTDVALVQTL+S+S+ELVSCFS + FFQR+NSR
Sbjct: 1 MATAAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVSTELVSCFSGKSLFFQRKNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDSG--TCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLL 118
SLIRK+E F+VLLEYLRDSG + + ++CFKELYLLLYR KILLD C QSSKLWLLL
Sbjct: 61 SLIRKIEVFVVLLEYLRDSGAGSALSPPTIVCFKELYLLLYRSKILLDCCVQSSKLWLLL 120
Query: 119 QNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLR 178
QNH+ISGHFHDLNQEISTLLDVFP DD+ELSEDVREQIDLM +Q+R A L IDK +E LR
Sbjct: 121 QNHTISGHFHDLNQEISTLLDVFPLDDVELSEDVREQIDLMHKQSRKATLFIDKEEEDLR 180
Query: 179 LRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTAS 238
+ FSFLDEFE G++PN VDLR FFVEGLGIKDAK+ RAEIEFLEEQIVNHEGD EPTAS
Sbjct: 181 VSFFSFLDEFEKGKIPNMVDLRMFFVEGLGIKDAKSSRAEIEFLEEQIVNHEGDIEPTAS 240
Query: 239 VLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIML 298
VLNGFVAI RY RFLL+GFEE+E EL IG+ KK RKGLI+QEIAETF++IPKDFCCPI L
Sbjct: 241 VLNGFVAIARYCRFLLYGFEENEVELQIGNQKKLRKGLISQEIAETFITIPKDFCCPISL 300
Query: 299 DLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358
DLMRDPVIISTGQTYDR I+RWMEEGH TCPKTGQML++ RLVPNRALRNLIVQWCTAH
Sbjct: 301 DLMRDPVIISTGQTYDRSLISRWMEEGHCTCPKTGQMLMNTRLVPNRALRNLIVQWCTAH 360
Query: 359 GIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLA 418
GIPYDPPE TD E+FA+A+PS+AA+EANRATA LLI +LA+GS AKTVAAR IRLLA
Sbjct: 361 GIPYDPPENTDSLVEAFAAAMPSKAAIEANRATATLLIHKLASGSQHAKTVAARGIRLLA 420
Query: 419 KTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478
K+G+ENRAFIA+AGAIPHLRNLLS+ N VAQENSVTA+LNLSI+DKNKS+IMDE GCLGS
Sbjct: 421 KSGRENRAFIAEAGAIPHLRNLLSSTNSVAQENSVTAILNLSIHDKNKSQIMDETGCLGS 480
Query: 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAV 538
IV VLRFGLTTEARENAAATLFSLSAVH+YKK+IADE GAVEALA LLR GTPRGKKDAV
Sbjct: 481 IVGVLRFGLTTEARENAAATLFSLSAVHDYKKRIADEEGAVEALAGLLRAGTPRGKKDAV 540
Query: 539 TALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEM 598
TALFNLSTHT+NC+RMIEAGAVTALVGALG+EGVAEEAAGALALIVRQPIGA AVG EEM
Sbjct: 541 TALFNLSTHTENCLRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVGGEEM 600
Query: 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRA 658
AV GL+GMMRCGTPRGKENAVAALLELCRSGG ATE+VLKAPAL GLLQ+LLFTGTKRA
Sbjct: 601 AVAGLIGMMRCGTPRGKENAVAALLELCRSGGTVATEKVLKAPALWGLLQSLLFTGTKRA 660
Query: 659 RRKAASLARVFQRCE 673
RRKAASLARVFQRCE
Sbjct: 661 RRKAASLARVFQRCE 675
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30013679|gb|AAP03882.1| Avr9/Cf-9 rapidly elicited protein 276 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/726 (75%), Positives = 625/726 (86%), Gaps = 11/726 (1%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFS-DRCFFFQRRNS 59
MA+AAIFSSLRR+RSPSL+AFLAPVDLT+V L+QTL ++SSEL+S FS R F+Q++N
Sbjct: 1 MASAAIFSSLRRQRSPSLEAFLAPVDLTEVGLLQTLTALSSELISSFSGKRVPFYQQKNC 60
Query: 60 RSLIRKMEAFLVLLEYL----------RDSGTCIESTAVLCFKELYLLLYRCKILLDYCG 109
+SL+RK++AF VLL+ L R + + TA LCFKELYLLLYR KILLDYC
Sbjct: 61 KSLLRKIQAFSVLLDCLVENSDNNRSGRGGSSDLPFTAFLCFKELYLLLYRSKILLDYCS 120
Query: 110 QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLH 169
QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFP ++ L EDV EQ++L+Q+QAR + L
Sbjct: 121 QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPLKELTLPEDVMEQVELLQKQARKSMLF 180
Query: 170 IDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNH 229
+DK+DE+LRL+LFSFL+EFE+G +P L SFFV+ L I + ++CR EIEFLEEQIVNH
Sbjct: 181 VDKHDEMLRLKLFSFLNEFENGGIPGSAQLYSFFVDKLVICNPRSCRVEIEFLEEQIVNH 240
Query: 230 EGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIP 289
EGD EPTASVLNGFVA++RY RFLLFGFEED+ LG+G HKK++KGLI+QEIA+T +S+P
Sbjct: 241 EGDIEPTASVLNGFVALIRYCRFLLFGFEEDDVGLGVGKHKKQKKGLISQEIADTSISVP 300
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRN 349
KDFCCPI LDLMRDPVI+STGQTYDR SI+RWMEEGH TCPKTGQ+L H RLVPNRALRN
Sbjct: 301 KDFCCPISLDLMRDPVIVSTGQTYDRASISRWMEEGHCTCPKTGQLLDHTRLVPNRALRN 360
Query: 350 LIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTV 409
LI+QWC AH IPYD E D ESF +A PS+AAVEANRAT LLI+QLANG+ AKT+
Sbjct: 361 LIMQWCAAHKIPYDNMEGGDPCVESFGAASPSKAAVEANRATTALLIKQLANGTQIAKTI 420
Query: 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469
AAREIRLLAKTGKENRA+IA+AGAIPHL+NLLS+ + VAQENSVTAMLNLSI+DKNK RI
Sbjct: 421 AAREIRLLAKTGKENRAYIAEAGAIPHLKNLLSSPDAVAQENSVTAMLNLSIFDKNKGRI 480
Query: 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG 529
MDE GCL +V VL FG TTEARENAAATLFSLSAVH+YKK+IA E GAVEALA LLR G
Sbjct: 481 MDEVGCLTLVVGVLIFGHTTEARENAAATLFSLSAVHDYKKQIAKEDGAVEALAGLLREG 540
Query: 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIG 589
+PRGKKDAVTALFNLSTHT+NC RMIE GA+TALVGALG EGVAEEAAGALALIVRQPIG
Sbjct: 541 SPRGKKDAVTALFNLSTHTENCARMIELGAITALVGALGSEGVAEEAAGALALIVRQPIG 600
Query: 590 AAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQA 649
AAAVG EEMAV GL+GMMRCGTPRGKENAVAALLELCR GGA+ATERVLKAPAL LLQ
Sbjct: 601 AAAVGNEEMAVAGLIGMMRCGTPRGKENAVAALLELCRGGGAAATERVLKAPALASLLQT 660
Query: 650 LLFTGTKRARRKAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMS 709
LLFTGTKRARRKAASLARVFQRCE+A++H+GGLGVGYAFAGNSA RDS+F DVSV MS
Sbjct: 661 LLFTGTKRARRKAASLARVFQRCEHASMHYGGLGVGYAFAGNSATVRDSTFAGDVSVSMS 720
Query: 710 ISVPVL 715
ISVPVL
Sbjct: 721 ISVPVL 726
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074982|gb|ACJ85851.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/692 (77%), Positives = 605/692 (87%), Gaps = 4/692 (0%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+ AIFSSLRRRRSP+L+AFLAPVDL+DVALVQTL+++ +ELV CFS R FFFQR+N+R
Sbjct: 1 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVCCFSKRSFFFQRKNTR 60
Query: 61 SLIRKMEAFLVLLEYLRDSGT----CIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWL 116
SLIRK+E F VLLEYL DSG+ + +T +LC KELYLLLYR KILLDYC QSSKLWL
Sbjct: 61 SLIRKVEVFQVLLEYLNDSGSGSGSVLPATGLLCLKELYLLLYRSKILLDYCAQSSKLWL 120
Query: 117 LLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDEL 176
LLQNHSISGHFHDLNQEISTLLDVFP D+ LS+DVREQI+L+ +Q+R AKL ID D+
Sbjct: 121 LLQNHSISGHFHDLNQEISTLLDVFPVKDVCLSKDVREQIELLLKQSRRAKLFIDMEDDA 180
Query: 177 LRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPT 236
LR+R F FLD+FE+GR+P+ +LRSF+V+ L I DA CR EIE LEEQIVNHEGD EPT
Sbjct: 181 LRVRFFEFLDQFENGRIPDSEELRSFYVDKLQIMDAACCRTEIEALEEQIVNHEGDIEPT 240
Query: 237 ASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPI 296
SVL G VA+ RY RFL+FGFEEDE ++ GS KK +KGLITQEIA+TFL++PKDFCCPI
Sbjct: 241 VSVLKGLVAMTRYCRFLIFGFEEDELDMENGSQKKIKKGLITQEIADTFLTVPKDFCCPI 300
Query: 297 MLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356
LDLMRDPVIISTGQTYDR SI+RWM+EGH TCPKTGQ L H RLVPNRALRNLIVQWC+
Sbjct: 301 SLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCS 360
Query: 357 AHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRL 416
AHGIP +PPE + E+FASA P++AA+EANRATA LLIQQLANGS KTVAAREIRL
Sbjct: 361 AHGIPLEPPEVMEAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTVAAREIRL 420
Query: 417 LAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476
LAKTG+ENRAF+A+AGAIP+LR+LLS+ N VAQENSVTA+LNLSIYDKNKSRIMDE CL
Sbjct: 421 LAKTGRENRAFLAEAGAIPYLRDLLSSPNSVAQENSVTALLNLSIYDKNKSRIMDEASCL 480
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD 536
SIV VLRFG TTEARENAAATLFSLSAVH+YKK IADE+GAVEALA LL+ GTPRGKKD
Sbjct: 481 VSIVNVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRGKKD 540
Query: 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEE 596
AVTALFNLST TDNCVRMIEAGAVTALV ALG+EGVAEEAAGA+ALIVRQP GA A+ +
Sbjct: 541 AVTALFNLSTRTDNCVRMIEAGAVTALVEALGNEGVAEEAAGAIALIVRQPFGAKALVNQ 600
Query: 597 EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK 656
E AV GL+GMMRCGTPRGKENAVAALLELCRSGG++ATERV+KAPA+ GLLQ LLFTGTK
Sbjct: 601 EEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPAIAGLLQTLLFTGTK 660
Query: 657 RARRKAASLARVFQRCENAALHFGGLGVGYAF 688
RARRKAASLARVFQRCENA+LH+GGLGVGYA
Sbjct: 661 RARRKAASLARVFQRCENASLHYGGLGVGYAL 692
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500790|ref|XP_004161195.1| PREDICTED: U-box domain-containing protein 17-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/715 (76%), Positives = 625/715 (87%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MAAAAIFSSLRRRRSPSL+AFLAPVDL+DVALVQTL +++ELVS FSD+ FFFQRRNSR
Sbjct: 1 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSDKSFFFQRRNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQN 120
SLIRK+E LV LE+L+++ + TA+LC KELYLLLYR KILLDYC +SSKLWLLLQN
Sbjct: 61 SLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQN 120
Query: 121 HSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLR 180
HSISGHF+DLN E+ T DVFP +++EL DVREQ++L+Q+Q R +L +D+ DE+LR R
Sbjct: 121 HSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTR 180
Query: 181 LFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVL 240
SFLDEFE+GR+PN ++R FFV+ L I +AK+CRAEIEFLEEQIVNHEGD EPT +VL
Sbjct: 181 FLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVL 240
Query: 241 NGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDL 300
NGFVA+ RYSRF LFGFEED+ + G + KK +K LITQEIAETFL+IP+DFCCPI LDL
Sbjct: 241 NGFVALTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDL 300
Query: 301 MRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360
M+DPV ISTGQTYDR SI RWMEEGH TCPKTGQML+H RL PNRALRNLIVQWC AHG+
Sbjct: 301 MKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGV 360
Query: 361 PYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKT 420
PYDPP+ D SAES+A A P+RAA+EANRATA +LIQQL+ GS AKT+AAREIRLLAKT
Sbjct: 361 PYDPPDGMDASAESYAIASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKT 420
Query: 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIV 480
GKENRAFIA+AGAIPHL+ LL++ N VAQENSVTAMLNLSIYDKNKS IM E GCLG+I
Sbjct: 421 GKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGAIT 480
Query: 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540
VLRFG +TEARENAAATLFSLSAVH+YKK+IA+E GAVEALA LLR GTPRGKKDAVTA
Sbjct: 481 DVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTA 540
Query: 541 LFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600
LFNLSTHTDNCV+MIEAGAVTALVGALG+EGVAEEAAGALALIVRQP+GA AV ++E AV
Sbjct: 541 LFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKQERAV 600
Query: 601 TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660
GL+ MMRCGTPRGKENAVAALLELCRSGGA+ TE+V KAPAL GLLQ LLFTGTKRARR
Sbjct: 601 AGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARR 660
Query: 661 KAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISVPVL 715
KAASLARVFQRCE+ +H+GGLGVGYA+A NSA+NR+++F +VSVP+SISVPV+
Sbjct: 661 KAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRETNFASEVSVPISISVPVV 715
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459308|ref|XP_004147388.1| PREDICTED: U-box domain-containing protein 17-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/715 (76%), Positives = 625/715 (87%)
Query: 1 MAAAAIFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MAAAAIFSSLRRRRSPSL+AFLAPVDL+DVALVQTL +++ELVS FSD+ FFFQRRNSR
Sbjct: 1 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSDKSFFFQRRNSR 60
Query: 61 SLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQN 120
SLIRK+E LV LE+L+++ + TA+LC KELYLLLYR KILLDYC +SSKLWLLLQN
Sbjct: 61 SLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQN 120
Query: 121 HSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLR 180
HSISGHF+DLN E+ T DVFP +++EL DVREQ++L+Q+Q R +L +D+ DE+LR R
Sbjct: 121 HSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTR 180
Query: 181 LFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVL 240
SFLDEFE+GR+PN ++R FFV+ L I +AK+CRAEIEFLEEQIVNHEGD EPT +VL
Sbjct: 181 FLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVL 240
Query: 241 NGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDL 300
NGFVA+ RYSRF LFGFEED+ + G + KK +K LITQEIAETFL+IP+DFCCPI LDL
Sbjct: 241 NGFVALTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDL 300
Query: 301 MRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360
M+DPV ISTGQTYDR SI RWMEEGH TCPKTGQML+H RL PNRALRNLIVQWC AHG+
Sbjct: 301 MKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGV 360
Query: 361 PYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKT 420
PYDPP+ D S+ES+A A P+RAA+EANRATA +LIQQL+ GS AKT+AAREIRLLAKT
Sbjct: 361 PYDPPDGMDASSESYAIASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKT 420
Query: 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIV 480
GKENRAFIA+AGAIPHL+ LL++ N VAQENSVTAMLNLSIYDKNKS IM E GCLG+I
Sbjct: 421 GKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGAIT 480
Query: 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540
VLRFG +TEARENAAATLFSLSAVH+YKK+IA+E GAVEALA LLR GTPRGKKDAVTA
Sbjct: 481 DVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTA 540
Query: 541 LFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600
LFNLSTHTDNCV+MIEAGAVTALVGALG+EGVAEEAAGALALIVRQP+GA AV ++E AV
Sbjct: 541 LFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKQERAV 600
Query: 601 TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660
GL+ MMRCGTPRGKENAVAALLELCRSGGA+ TE+V KAPAL GLLQ LLFTGTKRARR
Sbjct: 601 AGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARR 660
Query: 661 KAASLARVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPDVSVPMSISVPVL 715
KAASLARVFQRCE+ +H+GGLGVGYA+A NSA+NR+++F +VSVP+SISVPV+
Sbjct: 661 KAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRETNFASEVSVPISISVPVV 715
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| TAIR|locus:2013688 | 729 | PUB17 "plant U-box 17" [Arabid | 0.993 | 0.973 | 0.633 | 4.2e-230 | |
| UNIPROTKB|Q6EUK7 | 728 | PUB4 "U-box domain-containing | 0.962 | 0.945 | 0.428 | 2.5e-136 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.699 | 0.757 | 0.352 | 1.2e-75 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.365 | 0.412 | 0.483 | 4.8e-75 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.362 | 0.373 | 0.477 | 8.5e-70 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.362 | 0.423 | 0.486 | 2.2e-69 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.356 | 0.416 | 0.488 | 3.5e-68 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.367 | 0.418 | 0.487 | 3.2e-64 | |
| TAIR|locus:2195563 | 686 | PUB19 "plant U-box 19" [Arabid | 0.711 | 0.741 | 0.306 | 2.6e-61 | |
| TAIR|locus:2181077 | 674 | SAUR21 "SMALL AUXIN UP RNA 21" | 0.499 | 0.529 | 0.376 | 3.9e-60 |
| TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2220 (786.5 bits), Expect = 4.2e-230, P = 4.2e-230
Identities = 465/734 (63%), Positives = 537/734 (73%)
Query: 1 MAAAAIFXXXXXXXXXXXQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSR 60
MA+AAIF +AFLAPVDL+ VALVQTL SISSE+VSCF+ F FQR+N+R
Sbjct: 1 MASAAIFSSLRRRRSPSLEAFLAPVDLSGVALVQTLASISSEVVSCFTSVRFSFQRKNAR 60
Query: 61 SLIRKMEAFLVLLEYLRDSG----------------TCIESTAVLCFKEXXXXXXXXXXX 104
SLIRK+E F+VL E+L DS + ESTA+LC KE
Sbjct: 61 SLIRKIEIFVVLFEFLVDSNWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLYRSKIL 120
Query: 105 XXXCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQAR 164
C QSSKLWLLLQN SISG+FHDLNQEISTLLDV P +D+ LS+D+REQI+L+QRQ+R
Sbjct: 121 VDYCAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSR 180
Query: 165 NAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEE 224
A+L+IDKNDE LR +SFLD FE+G++P+ VDLR FFVE LGI+D+K+CR+EIEFLEE
Sbjct: 181 KARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEE 240
Query: 225 QIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSH-KKRRKGLITQEIAE 283
QIVNH+GD EPT SV+NGFVAI RY RFLLFGFEED E I ++ KK RKG + QEI +
Sbjct: 241 QIVNHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQEIGD 300
Query: 284 TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343
TF+++PKDF CPI LDLM DPVIISTGQTYDR SIARW+EEGH TCPKTGQML+ R+VP
Sbjct: 301 TFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVP 360
Query: 344 NRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGS 403
NRAL+NLIVQWCTA GI Y+ E TD ESFASALP++AAVEAN+AT +LI+ LA+GS
Sbjct: 361 NRALKNLIVQWCTASGISYES-EFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419
Query: 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD 463
A+TVAAREIRLLAKTGKENRA+IA+AGAIPHL LL++ N +AQENSVTAMLNLSIY+
Sbjct: 420 QAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYE 479
Query: 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA 523
KNKSRIM+E CL SIV VL GLT EA+ENAAATLFSLSAVHEYKK+IA VEALA
Sbjct: 480 KNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALA 539
Query: 524 TLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEXXXXXXXXXXXXXXXXXXXXXXXXXXX 583
LL+ GTPRGKKDAVTAL+NLSTH DNC RMIE
Sbjct: 540 LLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALL 599
Query: 584 XRQPIXXXXXXXXXXXXTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPAL 643
RQ + GL+GMMRCGTPRGKENAVAALLELCRSGGA+ E+VL+APA+
Sbjct: 600 VRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAI 659
Query: 644 VGLLQALLFTGTXXXXXXXXXXXXVFQRCENAALHFGGLGVGYAFAGNSAANRDSSFTPD 703
GLLQ LLFTGT VFQR ENAA+ G Y F GN+ NRD FT D
Sbjct: 660 AGLLQTLLFTGTKRARRKAASLARVFQRRENAAMRSGV----YGFVGNTNGNRDGGFTTD 715
Query: 704 VSVPMSIS--VPVL 715
VSVP+SIS VPVL
Sbjct: 716 VSVPISISISVPVL 729
|
|
| UNIPROTKB|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 302/705 (42%), Positives = 417/705 (59%)
Query: 20 AFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLE-YLRD 78
AF AP L L++ + S+++ LV+ QRRN +L R++ +LE L D
Sbjct: 30 AFFAPTGLAGATLLRAVASLAASLVAGARPPS---QRRNVDALARRLALLSAILESILLD 86
Query: 79 SGTC--IESTAVLCFKEXXXXXXXXXXXXXXCGQSSKLWLLLQNHSISGHFHDLNQEIST 136
+ A LCF+E + + W LL++ ++ F DL+ E++
Sbjct: 87 TAAAGAFSDAANLCFRELYVVLFRAELLVSYVASAGRAWALLRSPHLAASFRDLDAELAV 146
Query: 137 LLDVFPADDIELSEDVREQIDLMQRQAR---NAKLHIDKNDELLRLRLFSFLDEFEHGRV 193
+LDV PA + LS D +DL++ R A+ H D ++ LR RL L +F+ G+
Sbjct: 147 VLDVLPAASLRLSHDATGLLDLLRAHCRCRAPAQYH-DPDEAALRERLMDALRQFDLGQP 205
Query: 194 PNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFL 253
P+H L+S + +GI A +CRAEI++LEEQI++ E D + ++ +A++RY F
Sbjct: 206 PDHPSLQSLLAD-MGISTAASCRAEIDYLEEQILSQEEDTD--LPLVGSVLALLRYCLFA 262
Query: 254 LFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTY 313
+F +A R++ L +T S+PK+F CPI LDLMRDPV+ STGQTY
Sbjct: 263 VFDPSNAKALRDWPLSGNRQRLLSIGGGDDTSFSVPKEFSCPISLDLMRDPVVASTGQTY 322
Query: 314 DRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDPPETTDVSAE 373
DR SI +W+EEGH TCP +GQ L RLVPNRALR+LI QWC +G+ YD PE+ + AE
Sbjct: 323 DRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQWCGVYGLQYDSPESNEGMAE 382
Query: 374 SFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA 433
A++ SRAA+EAN+ATA +L++ L +GS K VAA+EIRLLAKTGK+NRAFIA GA
Sbjct: 383 CVAASCSSRAAMEANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGA 442
Query: 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARE 493
IP L LL +++ +AQEN+VTA+LNLSI++ NK RIM++EGCL IV VL+ G TTEA+E
Sbjct: 443 IPLLCRLLLSNDWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTEAKE 502
Query: 494 NAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR 553
NAAATLFSLS VH +KK I +E GAVE LA++L GT RGKKDAV ALFNLSTH ++ R
Sbjct: 503 NAAATLFSLSVVHNFKKLIMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESSAR 562
Query: 554 MIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPIXXXXXXXXXXXXTGLVGMMRCGTPR 613
M+E +QP T LVG+MR GTP+
Sbjct: 563 MLESCAVVALIQSLRNDTVSEEAAGALALLMKQPSIVHLVGSSETVITSLVGLMRRGTPK 622
Query: 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTXXXXXXXXXXXXVFQRCE 673
GKENAV+AL E+CR GG++ +RV K P L ++Q + GT + QR +
Sbjct: 623 GKENAVSALYEICRRGGSALVQRVAKIPGLNTVIQTITLNGTKRAKKKASLIVKMCQRSQ 682
Query: 674 N-AALHFGGL--GVGYAFAGNSAANRDSSF-TPDVSVPMSISVPV 714
+A+ G V + GN+ R +SF + ++S P+SISV V
Sbjct: 683 MPSAMALGSTLTVVDRSLVGNNTLRRAASFGSGELSNPISISVQV 727
|
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| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 182/517 (35%), Positives = 278/517 (53%)
Query: 34 QTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKE 93
Q+L+ + +E ++ SD ++ +L R+++ + + E +R+S I +
Sbjct: 10 QSLIDVVNE-IAAISDYRITVKKL-CYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMN 67
Query: 94 XXXXXXXXXXXXXXCGQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVR 153
C Q SK++L+++ ++ +++ ++ L P +++++S++VR
Sbjct: 68 LKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVR 127
Query: 154 EQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAK 213
EQ++L+ Q R AK +D +D+ L L S ++ V + + + L + +
Sbjct: 128 EQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSD--VDAYQPVLERVAKKLHLMEIP 185
Query: 214 TCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRR 273
E L E + + GD + +++ + + +++ E +G + R
Sbjct: 186 DLAQESVALHEMVASSGGDVGEN---IEEMAMVLKMIKDFVQTEDDNGEEQKVGVNS-RS 241
Query: 274 KGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333
G + ++ IP DF CPI L++MRDPVI+S+GQTY+R I +W+E GH TCPKT
Sbjct: 242 NGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQ 301
Query: 334 QMLVHDRLVPNRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAE 393
Q L L PN LR+LI QWC A+ I +PP+ S+ S A EAN+ E
Sbjct: 302 QALTSTTLTPNYVLRSLIAQWCEANDI--EPPKPPSSLRPRKVSSFSSPA--EANKI--E 355
Query: 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSV 453
L+ +LA G+P + AA EIRLLAK +NR IA+AGAIP L LLST + QE+SV
Sbjct: 356 DLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSV 415
Query: 454 TAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIA 513
TA+LNLSI + NK I+ G + IV+VL+ G + EARENAAATLFSLS + E K I
Sbjct: 416 TALLNLSICENNKGAIVSA-GAIPGIVQVLKKG-SMEARENAAATLFSLSVIDENKVTIG 473
Query: 514 DESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550
GA+ L LL GT RGKKDA TALFNL + N
Sbjct: 474 -ALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGN 509
|
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| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 4.8e-75, Sum P(3) = 4.8e-75
Identities = 130/269 (48%), Positives = 182/269 (67%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP+ F CPI L+LM+DPVI+STGQTY+R SI +W++ GH+TCPK+ + L+H L PN L
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307
Query: 348 RNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAK 407
++LI WC ++GI + P+ S + + + ++ + +R L+++LANG+ +
Sbjct: 308 KSLIALWCESNGI--ELPQNQG-SCRT--TKIGGSSSSDCDRTFVLSLLEKLANGTTEQQ 362
Query: 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467
AA E+RLLAK +NR IA+AGAIP L LLS+ +P QE+SVTA+LNLSI + NK
Sbjct: 363 RAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKG 422
Query: 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR 527
I+D G + IV+VL+ G + EARENAAATLFSLS + E K I +GA++AL +LL
Sbjct: 423 AIVDA-GAITDIVEVLKNG-SMEARENAAATLFSLSVIDENKVAIG-AAGAIQALISLLE 479
Query: 528 LGTPRGKKDAVTALFNLSTHTDNCVRMIE 556
GT RGKKDA TA+FNL + N R ++
Sbjct: 480 EGTRRGKKDAATAIFNLCIYQGNKSRAVK 508
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 129/270 (47%), Positives = 170/270 (62%)
Query: 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
++IP +F CPI L+LM+DPVI+STGQTY+R I +W+ GH TCP T Q + L PN
Sbjct: 271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNY 330
Query: 346 ALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPR 405
LR+LI QWC +G+ +PP+ S P+ A + RA + L+ +L +
Sbjct: 331 VLRSLISQWCETNGM--EPPK------RSTQPNKPTPACSSSERANIDALLSKLCSPDTE 382
Query: 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465
+ AA E+RLLAK NR IA+AGAIP L +LLS+ + QE++VTA+LNLSI++ N
Sbjct: 383 EQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDN 442
Query: 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL 525
K+ I+ G + SIV VL+ G + EARENAAATLFSLS + EYK I GA+ AL L
Sbjct: 443 KASIISS-GAVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIGG-MGAIPALVVL 499
Query: 526 LRLGTPRGKKDAVTALFNLSTHTDNCVRMI 555
L G+ RGKKDA ALFNL + N R I
Sbjct: 500 LGEGSQRGKKDAAAALFNLCIYQGNKGRAI 529
|
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| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 131/269 (48%), Positives = 177/269 (65%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP +F CPI L+LM+DPVI+S+GQTY+R I +W++ GH+TCPKT Q L H L PN L
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287
Query: 348 RNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAK 407
++LI QWC A+GI + P+ S + A+ + + + A L+ +L +G+ +
Sbjct: 288 KSLISQWCEANGI--ELPKNKQNSRDKKAAK-----SSDYDHAGLVSLMNRLRSGNQDEQ 340
Query: 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467
AA EIRLLAK NR IA+AGAIP L NLLS+ +P QE++VTA+LNLSI++ NK+
Sbjct: 341 RAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKA 400
Query: 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR 527
I+D + IV+VL+ G + E RENAAATLFSLS V E K I +GA+ L LL
Sbjct: 401 SIVDSHA-IPKIVEVLKTG-SMETRENAAATLFSLSVVDENKVTIG-AAGAIPPLINLLC 457
Query: 528 LGTPRGKKDAVTALFNLSTHTDNCVRMIE 556
G+PRGKKDA TA+FNL + N VR ++
Sbjct: 458 DGSPRGKKDAATAIFNLCIYQGNKVRAVK 486
|
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 3.5e-68, Sum P(4) = 3.5e-68
Identities = 132/270 (48%), Positives = 169/270 (62%)
Query: 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
L+IP DF CP+ L+LM+DPVI++TGQTY+R I RW++ G+ TCPKT Q L + L PN
Sbjct: 239 LTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNY 298
Query: 346 ALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPR 405
LR+LI +WC H I + P A + R + + L+Q+L++ S
Sbjct: 299 VLRSLISRWCAEHNI--EQP----------AGYINGRTKNSGDMSVIRALVQRLSSRSTE 346
Query: 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465
+ A EIR L+K +NR IA+AGAIP L NLL++ + QEN++T +LNLSIY+ N
Sbjct: 347 DRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENN 406
Query: 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL 525
K IM G + SIV+VLR G T EARENAAATLFSLS E K I SGA+ AL L
Sbjct: 407 KELIMFA-GAVTSIVQVLRAG-TMEARENAAATLFSLSLADE-NKIIIGGSGAIPALVDL 463
Query: 526 LRLGTPRGKKDAVTALFNLSTHTDNCVRMI 555
L GTPRGKKDA TALFNL + N R +
Sbjct: 464 LENGTPRGKKDAATALFNLCIYHGNKGRAV 493
|
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| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.2e-64, Sum P(4) = 3.2e-64
Identities = 132/271 (48%), Positives = 166/271 (61%)
Query: 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
L+IP+DF CPI L+LM+DP I+STGQTY+R I RW++ G+ +CPKT Q L + L PN
Sbjct: 241 LTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNY 300
Query: 346 ALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPR 405
LR+LI QWCT H I + S S + A RA L+ +L++ S
Sbjct: 301 VLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRA----LVCKLSSQSIE 356
Query: 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPV-AQENSVTAMLNLSIYDK 464
+ A EIR L+K +NR IA+AGAIP L LL++ QEN+VT +LNLSIY+
Sbjct: 357 DRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEH 416
Query: 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALAT 524
NK IM G + SIV VLR G + EARENAAATLFSLS E K I SGA+ AL
Sbjct: 417 NKELIM-LAGAVTSIVLVLRAG-SMEARENAAATLFSLSLADE-NKIIIGASGAIMALVD 473
Query: 525 LLRLGTPRGKKDAVTALFNLSTHTDNCVRMI 555
LL+ G+ RGKKDA TALFNL + N R +
Sbjct: 474 LLQYGSVRGKKDAATALFNLCIYQGNKGRAV 504
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| TAIR|locus:2195563 PUB19 "plant U-box 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 166/542 (30%), Positives = 278/542 (51%)
Query: 25 VDLTDVALVQTLLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLEYLRDS---GT 81
+ LT LV +LL ++ E++S F + F +R+ + +R ++ ++ E LR G+
Sbjct: 24 ISLT--TLVDSLLQLAGEILS-FKPKHFSTNKRSVKETLRHVQTLVIFFEELRIQIRVGS 80
Query: 82 CIESTAV-LCFKEXXXXXXXXXXXXXXCGQS-SKLWLLLQNHSISGHFHDLNQEISTLLD 139
+V L E C + +KL++L+ + +S HF DL + IST LD
Sbjct: 81 IPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLD 140
Query: 140 VFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHVDL 199
FP ++L +V E I L+ RQ R ++ D++D+ ++ F + FE+ PN ++
Sbjct: 141 TFPVRSVDLPGEVNELIYLVMRQTRKSEARPDRDDKRAIDSVYWFFNLFENRINPNSDEI 200
Query: 200 RSFFVEGLGIKDAKTCRAEIEFLEEQI-VNHEGDAE-PTASVLNGFVAIMRYSRFLLFGF 257
++ +G++ + C EI+FL E+I V + + E S L GF+ R +L G
Sbjct: 201 LRV-LDHIGVRKWRDCVKEIDFLREEISVGKKSNIEIELLSNLMGFICYCRC--VILRGI 257
Query: 258 EEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRS 317
+ D+ E K+ ++ + L++ D CPI L++M DPV++ +G TYDR S
Sbjct: 258 DVDDEE----KDKEEDDLMMVRS-----LNVD-DLRCPISLEIMSDPVVLESGHTYDRSS 307
Query: 318 IARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYDPPETTDVSAESFAS 377
I +W G+ TCPKTG+ LV LV N +++ +I + +G+ V A
Sbjct: 308 ITKWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSYSKQNGVVMGQKGKKKVDV---AE 364
Query: 378 ALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHL 437
+L AA EA + TAE L +L G A EIR+L KT R+ + +AG + L
Sbjct: 365 SL---AAEEAGKLTAEFLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESL 421
Query: 438 RNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGC-LGSIVKVLRFGLTTEARENAA 496
+L + +P QEN++ ++NLS K+RI+ E+G L IV+VL G E+R+ AA
Sbjct: 422 MKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAA 481
Query: 497 ATLFSLSAVHEYKKKIADESGAVEALATLLRLGT--PRGKKDAVTALFNL-STHTDNCVR 553
A LF LS++ +Y + I + S A+ L +++ K++A+ A+ +L DN R
Sbjct: 482 AALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWR 541
Query: 554 MI 555
++
Sbjct: 542 IL 543
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| TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 139/369 (37%), Positives = 197/369 (53%)
Query: 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRA 346
+IP DF CPI L+LMRDPV+++TGQTYDR SI W++ GH TCPKTGQ+L H LVPNRA
Sbjct: 273 NIPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRA 332
Query: 347 LRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRA 406
L+NLIV WC IP++ + + P + AVE + LI++L+
Sbjct: 333 LKNLIVLWCRDQKIPFE------LYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSNG 386
Query: 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK 466
E+R LAK+ RA IA+AGAIP L L+T P Q N+VT +LNLSI ++NK
Sbjct: 387 VVF---ELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNK 443
Query: 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526
+RIM+ +G L +++VLR G T EA+ NAAATLFSL+ V Y++++ ++ V L L
Sbjct: 444 TRIMETDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLA 503
Query: 527 RLGTPRGKKDAVTALFNLSTHTDNCVRMIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQ 586
+ G K+DA+ A+ NL +N R +E R
Sbjct: 504 KQGPTSSKRDALVAILNLVAERENVGRFVEAGVMGAAGDAFQELPEEAVAVVEAVVR-RG 562
Query: 587 PIXXXXXXXXXXXXTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGL 646
+ G V MR G +E+A A L+ +CR GG+ + P + +
Sbjct: 563 GLMAVSAAFSLIRLLGEV--MREGADTTRESAAATLVTMCRKGGSELVAEMAAIPGIERV 620
Query: 647 LQALLFTGT 655
+ ++ GT
Sbjct: 621 IWEMIGAGT 629
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EUK7 | PUB04_ORYSJ | 6, ., 3, ., 2, ., - | 0.4680 | 0.9622 | 0.9450 | yes | no |
| Q9C7R6 | PUB17_ARATH | 6, ., 3, ., 2, ., - | 0.7193 | 0.9930 | 0.9739 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00035825001 | SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (714 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 715 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 1e-26 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 4e-21 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 8e-12 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-07 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-05 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 2e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.001 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-26
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNL 350
+F CPI L++M+DPVI+ +GQTY+R +I +W+ H T P TGQ L H+ L+PN AL++
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59
Query: 351 IVQW 354
I +W
Sbjct: 60 IQEW 63
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Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 4e-21
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP +F PI L+LM+DPVI+ +G TYDR +I R + T P T + L HD+L+PN L
Sbjct: 1 IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60
Query: 348 RNLIVQWCTAHGI 360
+ I W +
Sbjct: 61 KEKIDAWLEENRW 73
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-12
Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 57/282 (20%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQE---- 450
L+Q L GS +AK +A + L ++ RA + AGA+P L LL P QE
Sbjct: 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552
Query: 451 --------------NSVTAMLNLSIYDKNKSRIMDEEGC--------------------L 476
+ +TA+L L ++K ++D G L
Sbjct: 553 TLTKLVRTADAATISQLTALL-LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611
Query: 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKK- 535
+++++L E +E AA+ L+ + ++ + + E + ++L T +
Sbjct: 612 RTLIQLLSSS-KEETQEKAAS---VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV 667
Query: 536 -----DAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEG---VAEEAAGALA-LIVRQ 586
A+ AL S + V A+ L+ L VAE+A ALA L+
Sbjct: 668 ATQSARALAALSR-SIKENRKVSYAAEDAIKPLI-KLAKSSSIEVAEQAVCALANLLSDP 725
Query: 587 PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628
+ A A+ E+ + L ++R GT GK NA AL +L +
Sbjct: 726 EVAAEALAED--IILPLTRVLREGTLEGKRNAARALAQLLKH 765
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL 487
+ +AG +P L +LLS+ + Q + A+ NLS + + + + E G L ++V++L+
Sbjct: 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE- 61
Query: 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546
E + A L +L+A E K I E+G V L LL +K+A AL NL++
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L+ L++ + AA + L+ +N + +AG +P L LL + + + +
Sbjct: 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504
+ A+ NL+ ++ I+ E G + +V +L + ++NA L +L++
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG 529
+ + G L ++V +L + AA L +LSA + + E+G + AL LL+
Sbjct: 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 530 TPRGKKDAVTALFNLSTHTDNCVR-MIEAGAVTALVGALGH--EGVAEEAAGALALIVR 585
K A+ AL NL+ ++ ++EAG V LV L E + + A GAL+ +
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALGHEG-- 571
++G + AL +LL +++A AL NLS DN ++EAG + ALV L E
Sbjct: 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 572 VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627
V + A AL + P + E V LV ++ ++NA AL L
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 10/209 (4%)
Query: 381 SRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNL 440
+R A+ ++ LL+ L +G+ AK AA + +L K ++ R + G IP L +L
Sbjct: 49 ARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSL 107
Query: 441 LSTHNPVAQENSVTAMLNLS---IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAA 497
L + + AQ+ + A+ +S + D S+I EG + S+ L+ G +
Sbjct: 108 LKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167
Query: 498 T--LFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL-STHTDNCVRM 554
T L +L + E+G V+ L LL G + +A + L L + ++
Sbjct: 168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKV 227
Query: 555 IEAGAVTALVGALGHE---GVAEEAAGAL 580
++AGAV L+ LG V EAAGAL
Sbjct: 228 LDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 20/212 (9%)
Query: 390 ATAELLIQQL--ANGSPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNP 446
A+ I+QL + SP+ K + + LAKT +E R I + A+P L +LL +
Sbjct: 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL 72
Query: 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS--- 503
A+ N+ + L + + +++ GC+ ++ +L+ G + EA++ AA ++++S
Sbjct: 73 GAKVNAAAVLGVLCKEEDLRVKVL-LGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGG 130
Query: 504 AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVT------ALFNLSTHTDNCVR-MIE 556
KI G V +L L+ P K+D V AL NL TD +E
Sbjct: 131 LSDHVGSKIFSTEGVVPSLWDQLQ---PGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE 187
Query: 557 AGAVTALVGAL--GHEGVAEEAAGALALIVRQ 586
AG V LV L G+ AA LA ++
Sbjct: 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMA 219
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460
EN+ + +AGA+P L LLS+ + QE + A+ NL+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 292 FCCPIMLDLMRD----PVIISTGQTYDRRSIARWMEEGHR-TCP 330
F CPI ++M D PV++ G Y R+++ + + G + CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 486 GLTTEARENAAATLFSL--SAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543
GL++E ++ A L ++ V E K I +G + L LL G+ + K+D+ T L+N
Sbjct: 456 GLSSEQQQEYAVALLAILTDEVDESKWAIT-AAGGIPPLVQLLETGSQKAKEDSATVLWN 514
Query: 544 LSTHTDN---CVRMIEAGAVTALVGALGHEGV--AEEAAGALALIVRQPIGAAAVGEEEM 598
L H+++ CV AGAV AL+ L + G E AA L +VR A
Sbjct: 515 LCCHSEDIRACVE--SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------- 564
Query: 599 AVTGLVGMMRCGTPRGKEN---------AVAALLELCRSGGASATERVLKAPALVGLLQA 649
++ L ++ P K + +VA+L +L R G A+ AL L+Q
Sbjct: 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND-------ALRTLIQ- 616
Query: 650 LLFTGTKRARRKAAS-LARVFQ 670
LL + + + KAAS LA +F
Sbjct: 617 LLSSSKEETQEKAASVLADIFS 638
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 79/349 (22%), Positives = 141/349 (40%), Gaps = 62/349 (17%)
Query: 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVA 448
R +LLI L S + + A + +L E++ I AG IP L LL T + A
Sbjct: 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKA 504
Query: 449 QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG-----------LTTEARENAAA 497
+E+S T + NL + ++ ++ G + +++ +L+ G LT R AA
Sbjct: 505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA 564
Query: 498 TLFSLSA----------------------VHEYKKKIADESGAVEALATLLRL---GTPR 532
T+ L+A V + + + S A +AL TL++L
Sbjct: 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEE 624
Query: 533 GKKDAVTALFNL-STHTDNCVRMIEAGAVTALVGAL--GHEGVAEEAAGALALI---VRQ 586
++ A + L ++ S+ D C + + + L E VA ++A ALA + +++
Sbjct: 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684
Query: 587 PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA--LV 644
+ E+ A+ L+ + + + E AV AL L S E +A A ++
Sbjct: 685 NRKVSYAAED--AIKPLIKLAKSSSIEVAEQAVCALANLL-----SDPEVAAEALAEDII 737
Query: 645 GLLQALLFTGTKRARRKAA-SLARVFQRCENAALHFGGLGVGYAFAGNS 692
L +L GT +R AA +LA++ + V +
Sbjct: 738 LPLTRVLREGTLEGKRNAARALAQLLKHFP----------VDDVLKDSV 776
|
Length = 2102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.93 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.9 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.87 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.81 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.8 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.8 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.77 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.74 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.73 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.72 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.61 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.55 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.53 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.42 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.37 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.25 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.25 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.24 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.23 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.1 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.1 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.06 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.04 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.02 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.01 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.01 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.85 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.83 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.82 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.77 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.77 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.73 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.71 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.7 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.65 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.65 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.63 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.61 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.59 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.59 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.58 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.55 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.51 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.5 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.48 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.43 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.43 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.38 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.37 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.33 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.33 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.32 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.31 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.29 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.27 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.27 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.27 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.24 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.22 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 98.2 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.18 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.17 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.14 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.06 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.04 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 98.02 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.01 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 98.0 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.97 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.95 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.95 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.93 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.93 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.93 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.82 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.79 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 97.76 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.73 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 97.69 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.65 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.64 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.62 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.57 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.56 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.52 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.46 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.46 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.42 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.41 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.4 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.37 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.3 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 97.28 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.21 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.2 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.18 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 97.17 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.13 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 97.09 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.06 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.02 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.0 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.0 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.99 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.99 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.98 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 96.97 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.96 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.9 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.84 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.82 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 96.81 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.65 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.63 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.62 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 96.59 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.42 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.4 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.38 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.34 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.3 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.28 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 96.22 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.21 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 96.2 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.11 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 96.11 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.1 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.04 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 96.04 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.99 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.92 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.92 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.77 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 95.74 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.67 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.62 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.6 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 95.6 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.54 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.54 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 95.32 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 95.31 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.25 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.19 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 95.17 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.16 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.05 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.94 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.86 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.84 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 94.77 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.72 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 94.69 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.67 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.66 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.63 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.54 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 94.53 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.52 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 94.5 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.49 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.26 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 94.23 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.2 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 94.12 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.97 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.93 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 93.92 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 93.9 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.89 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 93.81 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.73 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 93.72 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.53 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 93.5 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 93.46 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.43 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.39 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.38 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 93.38 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.33 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.17 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.15 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 93.1 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.91 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 92.77 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 92.72 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 92.71 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 92.7 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 92.66 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 92.42 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 92.18 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 91.97 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 91.89 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 91.81 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 91.78 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 91.76 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.53 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 91.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.99 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 90.96 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 90.92 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 90.88 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.74 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 90.73 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 90.64 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 90.64 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 90.63 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 90.6 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 90.48 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 90.26 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.21 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 89.97 | |
| COG5220 | 314 | TFB3 Cdk activating kinase (CAK)/RNA polymerase II | 89.97 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 89.91 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 89.62 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.08 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.96 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 88.91 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 88.9 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 88.67 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 88.13 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 88.08 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 87.88 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 87.78 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 87.58 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 86.97 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 86.34 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 86.12 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 86.08 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 85.95 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 84.74 | |
| KOG3002 | 299 | consensus Zn finger protein [General function pred | 84.52 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 84.36 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 84.25 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 84.07 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.06 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 83.87 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 83.59 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 83.49 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 83.42 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.22 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 82.46 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 82.29 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 81.65 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 81.63 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 81.51 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 81.26 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 81.26 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 80.93 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 80.88 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 80.81 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 80.5 | |
| KOG4464 | 532 | consensus Signaling protein RIC-8/synembryn (regul | 80.46 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 80.22 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=286.41 Aligned_cols=279 Identities=24% Similarity=0.274 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 388 NRATAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
....+.+|++.|+++ +++.+..|+..|+.+++.+++||..|++ .|+||.|+.+|++++..++++|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 356889999999976 8899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC---chhHHHHhcccCcHHHHHHHhhcCCh---hHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV---HEYKKKIADESGAVEALATLLRLGTP---RGKKDAV 538 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~I~~~~g~I~~Lv~LL~~~~~---~~~~~A~ 538 (715)
+|..|+ ..|+|++|+++|++| +.+.+++|+++|++|+.+ +.++..|+...|+||.|+.++++++. ..+..|+
T Consensus 91 nk~~Iv-~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 91 LRVKVL-LGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHH-HcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 999999 899999999999999 999999999999999987 45676777669999999999998752 2456778
Q ss_pred HHHHHhhcCCccHHH-HHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCC-hH
Q 038217 539 TALFNLSTHTDNCVR-MIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGT-PR 613 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~-iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s-~~ 613 (715)
.+|+|||.+++|+.+ ++++|+||.|+.+|+ ++.++..|+.+|.+++.+ ++++..+++.|+ ||.|+++|++++ +.
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa-VP~LV~LL~sg~~~~ 247 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGA-VKQLLKLLGQGNEVS 247 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC-HHHHHHHHccCCChH
Confidence 999999999999865 589999999999996 679999999999988865 679999999999 999999998764 58
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCH---------HHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK---------RARRKAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~---------~~k~~A~~lL~~l~~ 671 (715)
.|++|+++|++||.++ .+.+..+.+ .|+++.|+.++.+.+. ..++.|.+.|..+..
T Consensus 248 VRE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 248 VRAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999986 667778887 9999999999986543 348899998888775
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=275.51 Aligned_cols=281 Identities=23% Similarity=0.297 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..+.++.|+++|.+++.+.|..|++.|++++..+++++..|+++|+||+|+++|++++..+|++|+++|.|++.+++++.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999887755
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-------------------------------------H
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-------------------------------------K 510 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~ 510 (715)
.++...|++++|+++|+++ +.+.++.|+++|++|+...+.. .
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 5553789999999999999 9999999999999996432211 1
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ- 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~- 586 (715)
......|+++.|+++++++++..++.|+++|.|++.. ++++..++..|+|++|+.+|+ +.+++..++++|.+|+..
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 1112368999999999999999999999999999975 557888999999999999996 568999999999999863
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
.+++..+++.|+ |++|++++.+.+...++.|+.+|.+++..+ +....+.. .|+++.|+.++++|++++|+.|+++
T Consensus 683 ~~~q~~~~v~~Ga-V~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 683 KENRKVSYAAEDA-IKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALA-EDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred CHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHH
Confidence 445677888888 999999999999999999999999999985 34566666 7889999999999999999999986
Q ss_pred HHHHHHhh
Q 038217 666 ARVFQRCE 673 (715)
Q Consensus 666 L~~l~~~~ 673 (715)
|..|.+..
T Consensus 759 L~~L~~~~ 766 (2102)
T PLN03200 759 LAQLLKHF 766 (2102)
T ss_pred HHHHHhCC
Confidence 66555433
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=221.45 Aligned_cols=274 Identities=20% Similarity=0.266 Sum_probs=250.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
|.+..+.+.-++.+..+|..+...|.++. ++.+||..++.+|++|.||.+|+++|.++|+++.+++.|++.+..+|+.+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 46677777556888899999999999999 56899999999999999999999999999999999999999999999999
Q ss_pred hhhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 470 MDEEG--CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 470 ~~~~g--~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
+ +.| .++.||+++..+ +..++-.|.-+|.+|+...+|...|++ .|++|.|+++|++...........++.|++.+
T Consensus 246 a-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 246 A-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred H-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 8 777 999999999999 999999999999999999999999999 99999999999887777777888999999999
Q ss_pred CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
+.|-..++++|.+.+||.+|+ +++++-+|+..|+||+. ...++..|.+.|+ |+.+.+++..++-..|+.-.+++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCChhHHHHHHHHHH
Confidence 999999999999999999996 55799999999999987 5669999999999 999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 624 ELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 624 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.|+.+ +..+..+.. .|+++.|..+..+.+..++..|++.|-.|..
T Consensus 402 ~Lal~--d~~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 402 QLALN--DNDKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHhc--cccHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 99988 456778887 9999999999999999999888877666654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=218.03 Aligned_cols=273 Identities=22% Similarity=0.299 Sum_probs=247.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..|+....++..++|+.++.+|.+|+.. ++||..|+..|++.+|.+|-+++|..+|.+|..+|.|+....+||..++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 556778888888889999999999999976 7999999999999999998899999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC--cHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG--AVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g--~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
.+|++|.||.+++++ +..+++.++.++.+++....+++.+++ .+ .|+.||+++.++++.++-.|..+|.||+.+.
T Consensus 206 -~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 206 -HAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred -ccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 999999999999999 999999999999999999999999887 66 9999999999999999999999999999999
Q ss_pred ccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLEL 625 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L 625 (715)
+-...++++|.+|.++++|+++ ...-..+..+.|++-++-+...|.+.|. +.+||.+|+.+ +.+.|-+|+.+||+|
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagf-l~pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGF-LRPLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccc-hhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence 9999999999999999999854 6778889999999999999999999888 99999999986 456999999999999
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+... +..+..+.. .|.++.|.+|+.+|.-..+..-...+..|.
T Consensus 362 Aass-e~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 362 AASS-EHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhh-hhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9865 445556655 999999999999998888766665555554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=216.86 Aligned_cols=277 Identities=22% Similarity=0.223 Sum_probs=241.1
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
|.|+.+|..|. ..++..|..|++.|.+++..+.+.-..++++|++|.++.+|.+++..+++.|+++|.|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 68899999997 55699999999999999999999999999999999999999999999999999999999998866 66
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.+. ..|++++|+.++..........+++++|.+|+....-...+.....++|.|..++.+.++.+..+|+++|..|+..
T Consensus 189 ~vl-~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 189 YVL-SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHH-hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 777 9999999999998873447889999999999987754444444467999999999999999999999999999976
Q ss_pred Cc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHH
Q 038217 548 TD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAAL 622 (715)
Q Consensus 548 ~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L 622 (715)
+. ....++++|+++.|+.+|. +..++.-|+.++.|++...+ -.+.++..|+ ++.|..++.. .....|+.|++++
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhccCcchhHHHHHHHHH
Confidence 55 5555679999999999997 45788889999999987655 5566788888 9999999984 4556889999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.|++.++ .+..++++. +|++|.|+.+++++.-+.|+.|++.+..+.
T Consensus 347 SNItAG~-~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 347 SNITAGN-QEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHhhcCC-HHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 9999987 556678888 999999999999999999999999887654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=204.77 Aligned_cols=283 Identities=19% Similarity=0.220 Sum_probs=251.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCH-HHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNP-VAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~-~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.++.++..|.|.+.+++.+|+++|.+++.+++..|..+.+.|++++|+.++...+. .+..+++|+|.||+.+.+....
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 578899999999999999999999999999999999999999999999999988765 7899999999999988765444
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
+.....+++.|..+|.+. +.++...|+++|.+|+.....+..++-+.|+++.|+.+|...+..++-.|+.++.|++...
T Consensus 232 ~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 433468999999999998 9999999999999999888877777766999999999999988889999999999999887
Q ss_pred ccHHH-HHHhCChHHHHHhhC-C--hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 549 DNCVR-MIEAGAVTALVGALG-H--EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 549 ~n~~~-iv~aG~v~~Lv~lL~-~--~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
+...+ ++..|++|.|..+|. . ..++.+|++++.|++. +.+..+++.++|- +|.|+.+|.++.-+.|..|++++.
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l-~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANL-IPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHccc-HHHHHHHHhccchHHHHHHHHHHH
Confidence 76655 568999999999996 2 3688999999999965 5678889999988 999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 624 ELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 624 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
|++..+..+....+++ .|++++|..++.-.+.+.-..+...+..+-+..+.
T Consensus 390 N~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hhcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999988788888888 99999999999766778888888777777766554
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=180.88 Aligned_cols=272 Identities=18% Similarity=0.188 Sum_probs=230.2
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
|.++.+|+.+. ....-.+.+|+|.|.+++......-+.++++|++|.++++|.++..++++.++++|.|++.++.. |.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 57889999995 44455688999999999988766667788999999999999999999999999999999998866 66
Q ss_pred hhhhhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCch---hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGL-TTEARENAAATLFSLSAVHE---YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~---~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
-+. ..|++++++.+|.+.. +.....++.++|.||+.... ....| +.++|.|.+|+...++++..+|+++|.-
T Consensus 194 ~vL-~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~D~evlvDA~WAiSY 269 (526)
T COG5064 194 YVL-QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHH-hcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 666 9999999999998752 35778999999999987443 44444 5689999999999999999999999999
Q ss_pred hhcCCccHH-HHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 544 LSTHTDNCV-RMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 544 Ls~~~~n~~-~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
|+..+..+. .++..|..+.|+++|.+ ..++.-++....|+....+ ..+.+++.|. ++.+-.+|.+.....|..|+
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~-L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA-LKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc-HHHHHHHhcChhhhhhhhhh
Confidence 998766544 46789999999999974 4788889999999977554 5566789999 99999999988888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
+++.|+..++ .+..++++. ++++|+|+.++.+..-.+|+-|-|....
T Consensus 349 WTiSNITAGn-teqiqavid-~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 349 WTISNITAGN-TEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred eeecccccCC-HHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 456678888 9999999999999988888877765543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=174.42 Aligned_cols=279 Identities=18% Similarity=0.177 Sum_probs=238.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCchhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
++++.++.+|.+++.+++.+++|+|.+++.+++..|..+.+.|++++|+.+|.+. +..+..++.+.|.||+...+...
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999988775 45889999999999997654322
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.--.-.-++|.|.+++.+. +.|+...|++++.+|+..+..+..++-..|..+.||++|.+++...+.-|++.+.|+...
T Consensus 237 ~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 237 DWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred chHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 1111246899999999998 999999999999999998887777665589999999999998888899999999999987
Q ss_pred CccHHH-HHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 548 TDNCVR-MIEAGAVTALVGALGH--EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 548 ~~n~~~-iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
.+...+ ++.+|+++.+..+|++ +.++.++++.+.|+.. +.+..+++.+++- +|+|+.+|.......|..|++++.
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nl-iPpLi~lls~ae~k~kKEACWAis 394 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANL-IPPLIHLLSSAEYKIKKEACWAIS 394 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 765555 5689999999999974 4899999999999954 6778889999998 999999999888999999999999
Q ss_pred HHHhcCC--HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 624 ELCRSGG--ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 624 ~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|..+++. +.....++. .|++.+|..++.-.+.++-+.|...++.+-+
T Consensus 395 Natsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 395 NATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 9987762 245667777 9999999999988877777777665555443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=189.24 Aligned_cols=278 Identities=19% Similarity=0.262 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.++.++.|++.|.+++.+....++..|.+|+.. .+|+..|.+.|+|+.|++++.+++.+++..++.+|+|||.+.+.|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 467899999999999999999999999999965 7899999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs~ 546 (715)
.|+ ..|++|.|+.+|..+ ..+..+..+|.+||.+++.|..+.. .++||.|++++-++ +++....++.++.||+.
T Consensus 367 ~mV-~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 367 QMV-SLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHH-HCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 999 999999999999876 5667899999999999999999988 89999999987664 45566677788888888
Q ss_pred CCccHHHHHHhCChHHHHHhh-------------------------------------C---ChhHHHHHHHHHHHHh--
Q 038217 547 HTDNCVRMIEAGAVTALVGAL-------------------------------------G---HEGVAEEAAGALALIV-- 584 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL-------------------------------------~---~~~~~~~al~~L~~La-- 584 (715)
++.|...|++.|+++.|+... . +++...+++++|+||.
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 888877777766666554331 1 2244566777777775
Q ss_pred ------------------------------------------CCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHHHHH
Q 038217 585 ------------------------------------------RQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKENAVA 620 (715)
Q Consensus 585 ------------------------------------------~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~ 620 (715)
..++....+.+.|- ++.|+++++. .+++..-..+.
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl-i~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL-IPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh-HHHHHHHHHhhCchHHHHHHHHH
Confidence 33334444444444 5666666655 23555556666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
+++.+-.+ +..+..+++..+++..|+.++++.++.+++.|...|-++.++.+
T Consensus 601 ~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 601 VFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 77777777 45677787878999999999999999999999999999887543
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=195.44 Aligned_cols=260 Identities=24% Similarity=0.279 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc---------C---CHHHHHHHHHHHhhhhcCc-hhhhhhhhhc
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST---------H---NPVAQENSVTAMLNLSIYD-KNKSRIMDEE 473 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s---------~---d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~ 473 (715)
.+.|+..|.+++++ +++|+.+.+.|++..+-.||.- . ...++.+|..+|.||...+ .||..+....
T Consensus 315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 35889999999975 8999999999999999887742 1 2468999999999999866 6799999789
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcC-Ccc
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTH-TDN 550 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~-~~n 550 (715)
|+++.+|..|.+. ..++.+..+.+|+|||+..+ +-+++.+..|.+..|+.. |+...+...+..+.+||||+.+ .+|
T Consensus 394 gfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 394 GFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 9999999999997 88999999999999999766 555555558999999987 4445568899999999999985 679
Q ss_pred HHHHHHh-CChHHHHHhhC-C-----hhHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMIEA-GAVTALVGALG-H-----EGVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv~a-G~v~~Lv~lL~-~-----~~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
|..|..- |++..||.+|. + -.+++.+-+||.|.++ +.+.|+.+.+++- +.+|++.|++.|-.+..+++
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC-Lq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC-LQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH-HHHHHHHhhhcceEEeecch
Confidence 9999875 99999999996 2 3899999999999876 3556655566555 99999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTK-RARRKAASLARVFQR 671 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~-~~k~~A~~lL~~l~~ 671 (715)
++||||...+ .+.++.++. .|.++.|.+|+++... .+...|++|.++|..
T Consensus 552 GTLWNLSAR~-p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 552 GTLWNLSARS-PEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhhhcCC-HHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 9999999998 567888888 9999999999999854 555666666666654
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=144.06 Aligned_cols=72 Identities=49% Similarity=0.949 Sum_probs=63.7
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++++...+++||..|+..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 588999999999999999999999999999999999988999999999999999999999999999999986
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-16 Score=177.13 Aligned_cols=219 Identities=20% Similarity=0.173 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHH
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALAT 524 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~ 524 (715)
...+...|..+|+||+.+..+...|+ ..|.++.|+++|+++ +.++...++.+|..||...+|+..|++ .|+|+.|++
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM~-~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~k 338 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKMV-NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHH-hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHH
Confidence 44566688899999999999999999 999999999999998 999999999999999999999999999 999999999
Q ss_pred HhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHH
Q 038217 525 LLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLV 604 (715)
Q Consensus 525 LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv 604 (715)
++.+++......++.+|+|||.++++|.+|++.|+||.|+.+|.++.....++.+|.+|+..+++|..+...+. +|.++
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Tdc-Ip~L~ 417 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDC-IPQLM 417 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcch-HHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999998888876 99999
Q ss_pred HHhhcC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 605 GMMRCG-TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 605 ~lL~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+++.++ +++....+++++.||+.+ ....+.+.+ .|+++.|+.......+..- -.++|.++.+.
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~--~rnaqlm~~-g~gL~~L~~ra~~~~D~lL---lKlIRNiS~h~ 481 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALN--KRNAQLMCE-GNGLQSLMKRALKTRDPLL---LKLIRNISQHD 481 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcC--HHHHHHHHh-cCcHHHHHHHHHhcccHHH---HHHHHHHHhcC
Confidence 976664 555666778888999988 556667776 5778999988766554221 12555555443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=177.95 Aligned_cols=290 Identities=21% Similarity=0.192 Sum_probs=232.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc---hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD---KNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~---~nk 466 (715)
..++..+.+|.+.++..|-.|+..|+.+++.+...|..+.+.|+|+.||.+|.+.+.++|.+|+++|.||.... +||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999997643 579
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-------C-------Chh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-------G-------TPR 532 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-------~-------~~~ 532 (715)
..|. +.++|+.++++|+...|.|++++.+++|+|||++|..|..|.. .++..|.+-+-. + +..
T Consensus 313 lai~-~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 313 LAIK-ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred hhhh-hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccce
Confidence 9999 9999999999999755999999999999999999988888876 678888766532 1 134
Q ss_pred HHHHHHHHHHHhhc-CCccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCCcc-----h-HHHHhh-
Q 038217 533 GKKDAVTALFNLST-HTDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQPI-----G-AAAVGE- 595 (715)
Q Consensus 533 ~~~~A~~aL~nLs~-~~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~~e-----~-~~~i~~- 595 (715)
+..++..+|.|++. ..+.|.+|.+. |.|..|+..+. |...+++|+.+|.||+..-+ . +..+..
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 66799999999998 67789999876 88999999884 56889999999999975211 0 000000
Q ss_pred -------------------------------------hC-C----cHHHHHH----Hhhc-CChHHHHHHHHHHHHHHhc
Q 038217 596 -------------------------------------EE-M----AVTGLVG----MMRC-GTPRGKENAVAALLELCRS 628 (715)
Q Consensus 596 -------------------------------------~g-~----~I~~Lv~----lL~~-~s~~~ke~A~~~L~~L~~~ 628 (715)
.. | +=+.+|+ +|.. ..+.+.|+++++|-||+..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00 0 1123333 3332 5788899999999999988
Q ss_pred CC---HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 038217 629 GG---ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGGL 682 (715)
Q Consensus 629 ~~---~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 682 (715)
.. ...+..+...+.+.+.|++|++++++++.+.++.+|+.|+.....-..++++
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~ 606 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKY 606 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcc
Confidence 73 3355555343788999999999999999999999999998765443344444
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=145.04 Aligned_cols=283 Identities=16% Similarity=0.156 Sum_probs=233.7
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh----
Q 038217 393 ELLIQQLA--NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN---- 465 (715)
Q Consensus 393 ~~Lv~~L~--s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n---- 465 (715)
..++..|. +.+.+.....+..++.-|-.++.||..|++.|+.|.+...|.. +..++...+.++++-|..+++-
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 44555554 5677788889999999999999999999999999999976654 4456888899999999877763
Q ss_pred ------hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh----hHHH
Q 038217 466 ------KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP----RGKK 535 (715)
Q Consensus 466 ------k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~----~~~~ 535 (715)
...|+ ..|++..|++.|+.+.++.....+..+|..|+..++.+..|.+ .|++..|++++.+.+. ...+
T Consensus 228 g~ah~hAr~ia-~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 228 GQAHGHARTIA-KEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred chhhHHHHHHH-HhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHH
Confidence 45677 8889999999999988899999999999999999999999999 9999999999987443 3567
Q ss_pred HHHHHHHHhhcCCccHHHHHHhCChHHHHHhh----CChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcC
Q 038217 536 DAVTALFNLSTHTDNCVRMIEAGAVTALVGAL----GHEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCG 610 (715)
Q Consensus 536 ~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL----~~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~ 610 (715)
.++..|..|+.+++++..+|+.|+.+.++.++ .|+.+...++.++.-||. .|++...+++.|+ -...|+-|+..
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~-a~~avqAmkah 384 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA-ADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch-HHHHHHHHHhC
Confidence 88999999999999999999999999999987 278999999999999986 6888889999998 78888888864
Q ss_pred --ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 038217 611 --TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAALHFGG 681 (715)
Q Consensus 611 --s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 681 (715)
....|.+|+.++.|+..++ .+.+..+.. .+++.|+.......+.....|...||-|.=+-.....|+|
T Consensus 385 P~~a~vQrnac~~IRNiv~rs-~~~~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRS-AENRTILLA--NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-hhccchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhcc
Confidence 4567999999999999997 444555554 4588888888888888888888888776433222234555
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-14 Score=157.73 Aligned_cols=281 Identities=18% Similarity=0.182 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKE--NRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n 465 (715)
-+.|+.||..|.+...++|.+|+++|+||.+.+.. |+..|.+.|+|+.++++|+. .|.++++....+|+||+.++.-
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 36889999999999999999999999999988766 99999999999999999987 8999999999999999999887
Q ss_pred hhhhhhhcCcHHHHHHHHhcC---C----------CHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhc---
Q 038217 466 KSRIMDEEGCLGSIVKVLRFG---L----------TTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRL--- 528 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~---~----------~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~--- 528 (715)
|..|+ ..++..|..-+-.. + +.++-.+++++|+|++. ..+.+.++.+..|.|..|+..++.
T Consensus 354 K~~ii--~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 354 KMLII--TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHH--HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 88887 55677766654321 1 14566788899999987 666788888877888888876651
Q ss_pred ---CChh-------------------------------------------------------------------------
Q 038217 529 ---GTPR------------------------------------------------------------------------- 532 (715)
Q Consensus 529 ---~~~~------------------------------------------------------------------------- 532 (715)
-+..
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 1112
Q ss_pred -----------------------HHHHHHHHHHHhhcCCc-----cHHHH-HHhCChHHHHHhhC--ChhHHHHHHHHHH
Q 038217 533 -----------------------GKKDAVTALFNLSTHTD-----NCVRM-IEAGAVTALVGALG--HEGVAEEAAGALA 581 (715)
Q Consensus 533 -----------------------~~~~A~~aL~nLs~~~~-----n~~~i-v~aG~v~~Lv~lL~--~~~~~~~al~~L~ 581 (715)
+.+.++.+|-||+...- .+..+ .+..+.++|+.+|. |+.++..+.++|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 33445556666654321 23333 44567888999996 6789999999999
Q ss_pred HHhCCcchHHHHhhhCCcHHHHHHHhhcCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-
Q 038217 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRCGT------PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG- 654 (715)
Q Consensus 582 ~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~- 654 (715)
||+.+..++..|. .++ ++-||+.|..+. .+.--.++.+|+++...+ ......+.. .+.++.|+.|..+.
T Consensus 592 Nls~d~rnk~lig-k~a-~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~-~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 592 NLSRDIRNKELIG-KYA-IPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLE-IKGIPKLRLISKSQH 667 (717)
T ss_pred hhccCchhhhhhh-cch-HHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHh-ccChHHHHHHhcccC
Confidence 9999999999988 466 899999998742 577788889999999776 456677877 88999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 038217 655 TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 655 ~~~~k~~A~~lL~~l~~~~~~ 675 (715)
+++.-+.|..+|..|+.+.+.
T Consensus 668 S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999998776
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-13 Score=136.13 Aligned_cols=234 Identities=19% Similarity=0.228 Sum_probs=188.7
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.++.|+..|+ +.++..+..|+..+.+.+. .+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 46789999998 5689999999999999885 589999999999999999999999999999999999999999999988
Q ss_pred hhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
|- . .++.+++.+.+ ..+.+.+..++.+|.+|+..+++...+. +.++.++.+|..|+..++..++++|.|||.+
T Consensus 91 Ik-~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IK-M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HH-H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 76 3 57777776544 3467899999999999999988888774 4799999999999999999999999999999
Q ss_pred CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCC--cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQ--PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~--~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+...++.++++..++.++. +.++...++.++.|+..+ +++....-.... -..|.-+++ ++ ... +.-|
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~-~~~L~~~~~-e~---~~~-~~~l 238 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFS-EDSLFSLFG-ES---SQL-AKKL 238 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCC-chhHHHHHc-cH---HHH-HHHH
Confidence 999999999999999999995 458899999999999764 233333323333 455654443 21 122 2334
Q ss_pred HHHHhcCCHHHHHH
Q 038217 623 LELCRSGGASATER 636 (715)
Q Consensus 623 ~~L~~~~~~~~~~~ 636 (715)
..|..+.+++++.+
T Consensus 239 ~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 239 QALANHPDPEVKEQ 252 (254)
T ss_pred HHHHcCCCHHHhhh
Confidence 45556655555544
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-15 Score=117.94 Aligned_cols=63 Identities=52% Similarity=1.053 Sum_probs=60.3
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 354 (715)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++++...++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 78999999999999999999999999987
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-11 Score=120.33 Aligned_cols=263 Identities=16% Similarity=0.196 Sum_probs=211.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhh-cCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLS-IYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs-~~~~nk~~I~~~~g~i 476 (715)
.+++.....+++..|..+...-|+ +.++.+...++.+|.. ++.++-...+..+..-+ .++.||..++ +.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m-~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFM-ELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhHH
Confidence 367777888999999888865554 5577888999999864 56777777777777665 4778999999 99999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCch----------hHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhh
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHE----------YKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLS 545 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----------~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs 545 (715)
+.+...|.......+...+.++++.|..+|+ +...|.. .|+...|++.++.+ ++.....+..+|..|+
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999888653245678888999999887664 4455666 67899999999874 4788899999999999
Q ss_pred cCCccHHHHHHhCChHHHHHhhCC------hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc--CChHHHHH
Q 038217 546 THTDNCVRMIEAGAVTALVGALGH------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC--GTPRGKEN 617 (715)
Q Consensus 546 ~~~~n~~~iv~aG~v~~Lv~lL~~------~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~--~s~~~ke~ 617 (715)
..++.+..+++.|++..|+.++.| ..+...++..|..|+.++..+..|++.|| .+.++.++.. .+|.+-+.
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg-~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG-LDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC-hHHHHHHHHHcCCChHHHHH
Confidence 999999999999999999999963 14667899999999999999999999999 8999996554 68999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-C-CHHHHHHHHHHHHHHHH
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFT-G-TKRARRKAASLARVFQR 671 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~-~~~~k~~A~~lL~~l~~ 671 (715)
++.++.-||-..++... ..++ .|+-...++-++. . ....++.|.+++|.+-.
T Consensus 350 ~~a~i~~l~LR~pdhsa-~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSA-KAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHhcCcchHH-HHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999876654 4555 6766666665554 4 55668999988888764
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=126.37 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=169.7
Q ss_pred HHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 428 IAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 428 i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
+.+.+-++.|+.+|+. .|+.+++.|+.++.|.+.++.++..|. +.|+++.+..+|..+ ++.+++.|+.+|.+||.+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir-~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIR-DLGGISLIGSLLNDP-NPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHH-HcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCCh
Confidence 3567788999999985 789999999999999999999999999 999999999999998 9999999999999999999
Q ss_pred hhHHHHhcccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 507 EYKKKIADESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 507 ~~~~~I~~~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
+++..|-. .|+.+++...+. +..++..++.+|.||+..++.+..+. ++++.++.+|. +..++..++.+|.|
T Consensus 86 en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99998844 688888766554 46888999999999998877766664 47999999995 67899999999999
Q ss_pred HhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHHHhcC
Q 038217 583 IVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 583 La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~ 629 (715)
|+.++.....++.+.+ +..++.++... +.+.-..++...-++..+-
T Consensus 161 LS~np~~~~~Ll~~q~-~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 161 LSENPDMTRELLSAQV-LSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hccCHHHHHHHHhccc-hhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9999999999999888 89999998874 5677888888888886654
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-10 Score=129.41 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...+.|...|.+.++.++.-++..|++++.++......+.+.+.++.++.+|.++|..+...|+.+|.+++.++.+-..+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 46688899999999999999999999999887776777888999999999999999999999999999999998887788
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ..+.+..|..++... +...|-.+..++.+++...+.-..++...|.++.+++.+.+++.-++.+|+.+|..|+..+.
T Consensus 157 ~-~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 157 F-DSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred h-CcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 8 788899999999886 77889999999999987766555555558999999999998888899999999999999999
Q ss_pred cHHHHHHhCChHHHHHhhC----Ch----hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG----HE----GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~----~~----~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+...+.+.|+++.|+.++. |+ -+.-..+....+++.. .....+...+.++..|.+++.+.++..+..|..+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 9999999999999999995 33 1233444666677664 2222233334445666777888899999999999
Q ss_pred HHHHHhcCCHHHHHHH-HhcCC----cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERV-LKAPA----LVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
|..+|+. .+....+ ....+ ++........+++...|-++-..+..+
T Consensus 314 lg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 314 LGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999977 4445555 33122 455555566677777777776555544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=117.02 Aligned_cols=275 Identities=16% Similarity=0.236 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+..|..||..|.-++.+...-...-|..|+-- .+|+..+.+.|.|+.|+++....+++++...+..|+||+.+..++..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 45678888888877777777788888888865 69999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nLs~~ 547 (715)
++ ..|.+|.++.+|.+. .-..-|+..|..+|.+++.+..+.- ..+|+.|.+.+-++.. ++-..-+..--|||.+
T Consensus 382 Mv-~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 382 MV-NGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred Hh-hccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99 999999999999875 3456688999999999999998887 8999999988766543 2222222222366655
Q ss_pred CccHHHHHHhCChH-------------------------------------HHHHhhC---ChhHHHHHHHHHHHHhCCc
Q 038217 548 TDNCVRMIEAGAVT-------------------------------------ALVGALG---HEGVAEEAAGALALIVRQP 587 (715)
Q Consensus 548 ~~n~~~iv~aG~v~-------------------------------------~Lv~lL~---~~~~~~~al~~L~~La~~~ 587 (715)
..|.+.+++-.++. .|...++ ++....+|+++|+||.-.+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 55444443332222 2333332 2355677888888887322
Q ss_pred chHHH--------------------------------------------HhhhCCcHHHHHHHhhcC--ChHHHHHHHHH
Q 038217 588 IGAAA--------------------------------------------VGEEEMAVTGLVGMMRCG--TPRGKENAVAA 621 (715)
Q Consensus 588 e~~~~--------------------------------------------i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~ 621 (715)
-.-.. +..++. |+.|+++|+.. +++..-.-+.+
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~-i~tlieLL~a~QeDDEfV~QiiyV 615 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL-IDTLIELLQACQEDDEFVVQIIYV 615 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc-HHHHHHHHHhhcccchHHHHHHHH
Confidence 22222 223333 66777777652 34444445555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
...+..+ +..+..++++...-..|..|+++.+..+++-+-..|-++..+
T Consensus 616 F~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 616 FLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 5566666 455667777666778899999999999988888777777654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=117.62 Aligned_cols=239 Identities=19% Similarity=0.264 Sum_probs=155.4
Q ss_pred hHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhcccc--------chhHHHHhhhHHHHHHHHHHHHHHHHhccCCC
Q 038217 72 LLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQS--------SKLWLLLQNHSISGHFHDLNQEISTLLDVFPA 143 (715)
Q Consensus 72 lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~--------Sklyll~~~~~i~~~f~~~~~~l~~~L~~lp~ 143 (715)
.-++|--+..+.+--...++|-|. ++.+....+||+.. =+.|++-++-.-+..|-.....|.+++++.-.
T Consensus 33 y~raI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 33 YSRAICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 334444332233345678888887 99999999999865 12245555555555555899999999999988
Q ss_pred CcccchHHHHHHHHHHHHHHHhhh--ccCCchhHHHHHHHHHhhhhhccCCCCChHHHHHHhhhcCCCCCHHHHHHHHHH
Q 038217 144 DDIELSEDVREQIDLMQRQARNAK--LHIDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEF 221 (715)
Q Consensus 144 ~~l~~s~ev~e~v~~~~~q~~~~~--~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~~l~~~~~~~l~l~~~~~~~~E~~~ 221 (715)
..+...++|-+++.+++.+-+... .|+ .++.++.+.+.+++.. ++ ..+.+.+++ . | -+...
T Consensus 111 ~~~~~~~di~~~L~~ak~~~w~v~e~~Ri-~Q~~El~~yl~slie~-~~--~~~~s~~~~--N---~-~sde~------- 173 (284)
T KOG4642|consen 111 QPFTFGDDIPKALRDAKKKRWEVSEEKRI-RQELELHSYLESLIEG-DR--ERELSEWQE--N---G-ESDEH------- 173 (284)
T ss_pred CCCCCcchHHHHHHHHHhCccchhHHHHH-HHHhhHHHHHHHHhcc-ch--hhHHHHHHH--c---C-CChHH-------
Confidence 888899999998877665544222 111 3455566666665531 11 111111111 1 1 01111
Q ss_pred HHHHHHhhcCCCccchhhHhhHHHHHhhhhccccccccchhhhccccccccccccchhhhcccCCCCCCCCcCccCcccc
Q 038217 222 LEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLM 301 (715)
Q Consensus 222 l~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpIc~~lm 301 (715)
++.+-.....+-+.....|+.| |...++.. ...++|+.++|.|+.++|
T Consensus 174 ~k~~q~~~~~~~d~~~kel~el-----------f~~v~e~r---------------------k~rEvpd~lcgkIt~el~ 221 (284)
T KOG4642|consen 174 LKTMQVPIEQDHDHTTKELSEL-----------FSKVDEKR---------------------KKREVPDYLCGKITLELM 221 (284)
T ss_pred HhhhcchhHHHHHHHHHHHHHH-----------HHHHHHHh---------------------ccccccchhhhhhhHHhh
Confidence 1111111111111112233333 22222111 336789999999999999
Q ss_pred cCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 302 RDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 302 ~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
++||+.++|.||.|.-|.++++.-.+..|+++.+++...++||..|+..|..|...|+|.
T Consensus 222 ~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 222 REPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 999999999999999999999987788999999999999999999999999999999985
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=117.24 Aligned_cols=279 Identities=13% Similarity=0.116 Sum_probs=215.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc----CC---HHHHHHHHHHHhhhhcC
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST----HN---PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~d---~~~~~~A~~aL~nLs~~ 462 (715)
+.++.|....+|.+.++-.+..+.|.+.|.+|.++|..+.+.||-..++++|+. ++ .+.-.-+...|.|...+
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 366777777778889999999999999999999999999999998888888875 22 35556677888888776
Q ss_pred chh-hhhhhhhcCcHHHHHHHHhcC---------------------------------------------CCHHHHHHHH
Q 038217 463 DKN-KSRIMDEEGCLGSIVKVLRFG---------------------------------------------LTTEARENAA 496 (715)
Q Consensus 463 ~~n-k~~I~~~~g~i~~Lv~lL~~~---------------------------------------------~~~e~~~~Aa 496 (715)
.+. +.+.+ +.|+++.|+..+.=+ ..++.++...
T Consensus 167 ~~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 644 88888 899999777554211 1234455666
Q ss_pred HHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CCh-------hHHHHHHHHHHHhhcCCccHHHHHHhC-ChHHHHHhh
Q 038217 497 ATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTP-------RGKKDAVTALFNLSTHTDNCVRMIEAG-AVTALVGAL 567 (715)
Q Consensus 497 ~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~-------~~~~~A~~aL~nLs~~~~n~~~iv~aG-~v~~Lv~lL 567 (715)
.+|...+.++..|-.+++ .|.+..++++++. .+. ...+.++....-|...++.-.++...| .++.++.-+
T Consensus 246 eila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 777777778888888887 8899999999876 221 223444444444555555555555555 666777777
Q ss_pred C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 038217 568 G--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-----GTPRGKENAVAALLELCRSGGASATERVLKA 640 (715)
Q Consensus 568 ~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 640 (715)
. |..++..+.-++.|+++.++....+++.+. +..|++++.. |+-+.+..++++|.|+.-.-+ ....+..
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~-~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~- 400 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDF-LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP- 400 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHHHH-HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc-
Confidence 4 557888888899999999999999999888 9999996554 677889999999999998753 3567777
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 641 PALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 641 ~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
+|+++.++..++...|.+..|--..+|++++.++
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999999999998766
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=137.77 Aligned_cols=225 Identities=20% Similarity=0.153 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hh-hhhhhhhcCcHHHHHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KN-KSRIMDEEGCLGSIVK 481 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~n-k~~I~~~~g~i~~Lv~ 481 (715)
..++-|...|.||.+.+..|+..+... |+++.+|.-|.+...+++..-..+|.||+... .| |+.+- +.|-+..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr-E~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR-ETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH-hhhhHHHHHH
Confidence 457788899999999999999988764 99999999999988889888899999999854 34 66666 8999999988
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcC----CccHH
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLG----TPRGKKDAVTALFNLSTH----TDNCV 552 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~----~~n~~ 552 (715)
.--...........+.+|||||.+. +||..|++..|++..||.+|.-. .....+.|-.+|.|.+++ .+-|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 7544435677888999999998755 69999999899999999999532 246678899999998764 44677
Q ss_pred HHHHhCChHHHHHhhCCh--hHHHHHHHHHHHH-hCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 553 RMIEAGAVTALVGALGHE--GVAEEAAGALALI-VRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~L-a~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
.+.+.+++..|++.|+.. -++.++++.|+|| +.+++..+.+++.|+ |+.|-.++++....+-+-++++|.||-.+.
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gA-v~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGA-VPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhccc-HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 778999999999999744 6789999999999 558999999999999 999999999999899999999999999886
Q ss_pred CH
Q 038217 630 GA 631 (715)
Q Consensus 630 ~~ 631 (715)
+.
T Consensus 604 PA 605 (2195)
T KOG2122|consen 604 PA 605 (2195)
T ss_pred ch
Confidence 53
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=98.52 Aligned_cols=117 Identities=31% Similarity=0.365 Sum_probs=105.6
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 427 FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
.+++.|+++.|+.+|.+++..++..|+.+|.+++.+ +..+..+. ..|+++.++.+|..+ +..++..|+++|.+|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKSE-DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccC
Confidence 367889999999999999999999999999999998 57788888 889999999999997 999999999999999988
Q ss_pred ch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 506 HE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 506 ~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
.. ....+.. .|+++.|++++..++...++.|+.+|.||+.
T Consensus 80 ~~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 75 4555555 8999999999999889999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-11 Score=87.86 Aligned_cols=39 Identities=38% Similarity=0.842 Sum_probs=31.4
Q ss_pred CccCcccccCceeCCCccHhhHHHHHHHHHhCC---CCCCCC
Q 038217 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH---RTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~---~~CP~c 332 (715)
||||+++|.|||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 469987
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-08 Score=110.03 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=211.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
.+...|++.+.+....++..|..+.... .-... ..+..+.|...|.++++.++..++..|.++..+++....++.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 3777888777777777888888877542 22222 55788999999999999999999999999998887755555489
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cHH
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCV 552 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~~ 552 (715)
+.++.++..|..+ +.++...|+.+|..|+..+.+...+.. .+.+..|..++...+...+-.+..++.+++...+ ...
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999998 999999999999999999888888877 7889999999988777788889999999987554 556
Q ss_pred HHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC--ChHH----HHHHHHHHHH
Q 038217 553 RMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG--TPRG----KENAVAALLE 624 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~----ke~A~~~L~~ 624 (715)
.+...|.++.++..|. |.-++..++.+|..|+..++|..-+.+.|. ++.|+.++... +++. --..+....+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi-~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI-FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH-HHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 6677899999999996 346788999999999999999999999988 99999998763 2311 1112233445
Q ss_pred HHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 625 LCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 625 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
++...+..+.... ..++..|..+..++++..+..|-..+-.+....++
T Consensus 276 la~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 276 LARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 5554333332211 34567777888888888888888777777654433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-10 Score=111.87 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=53.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh---------------CCCCCCCCccccccCCCCccHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE---------------GHRTCPKTGQMLVHDRLVPNRA 346 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~---------------~~~~CP~c~~~l~~~~l~pn~~ 346 (715)
.+..++|.||||++.+.|||+++|||.||+.||.+|+.. +...||.|+.++....+.|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 566778999999999999999999999999999999853 2468999999999888888654
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=122.24 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
..+.+.+.|+||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++++.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 568889999999999999999999999999999999987 568999999998888999999999999887543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=94.60 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~ 467 (715)
.+.++.|+..|.+++++.+..++..|.+++..+++.+..+.+.|++|.|+.+|.++++.++..|+++|.|++.+... +.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 35789999999999999999999999999998899999999999999999999999999999999999999988744 56
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
.+. ..|+++.++++|..+ +.++++.|+++|.+|+.
T Consensus 86 ~~~-~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVL-EAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHH-HCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 666 899999999999998 89999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=110.83 Aligned_cols=180 Identities=21% Similarity=0.202 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHH
Q 038217 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL 525 (715)
Q Consensus 446 ~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L 525 (715)
..+...|+..|+||+.+-..-..+. ....+..||+.|... +.+........|..||..++|+..+++ .|.|+.|+++
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMr-rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~kl 353 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMR-RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH-HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHh
Confidence 4455678999999999888778888 889999999999998 889999999999999999999999999 9999999999
Q ss_pred hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHH
Q 038217 526 LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 526 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~ 605 (715)
+...+++.++..+..|+|||.+..++.+|+..|.+|.|+.+|.++.-..-|+.+|..++.++..+..+..... |+.+.+
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdc-i~~lmk 432 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDC-IKLLMK 432 (791)
T ss_pred cCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999998665556688899999776667666666666 999999
Q ss_pred HhhcCChHHHHHHHHH-HHHHHhcC
Q 038217 606 MMRCGTPRGKENAVAA-LLELCRSG 629 (715)
Q Consensus 606 lL~~~s~~~ke~A~~~-L~~L~~~~ 629 (715)
.+-+++......++-+ -.|||.+.
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc
Confidence 7766654444444433 36788763
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=102.00 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=163.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc------CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA------GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~------G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
|++.+ +.+.+.....+.-|..+..+++.....+... ....+++++|.++|.-++..|+.+|..|......+..
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 33444 5788889999999999998888777777652 2578888999999999999999999999877765554
Q ss_pred hhhhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-----hcC--ChhHHHHHH
Q 038217 469 IMDEEGCLGSIVKVLRFGL---TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-----RLG--TPRGKKDAV 538 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-----~~~--~~~~~~~A~ 538 (715)
-. ..+.++.++..|++.. +.+.+..|+.+|.+|...+.+|..+.+ .|+++.|+.++ ..+ +.+..=.++
T Consensus 142 ~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 142 KL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp HH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 43 3677888998887632 345668999999999999999999999 99999999999 222 246777999
Q ss_pred HHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc--hHHHHhhhCCcHHHHHHHhhc---C
Q 038217 539 TALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPI--GAAAVGEEEMAVTGLVGMMRC---G 610 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e--~~~~i~~~g~~I~~Lv~lL~~---~ 610 (715)
-++|-|+.+++....+...+.|+.|+.+++ .+.+..-++++|.||...+. ....++..|+ ..+++.|.. +
T Consensus 220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~--l~~l~~L~~rk~~ 297 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL--LKTLQNLSERKWS 297 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H--HHHHHHHHSS--S
T ss_pred HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH--HHHHHHHhcCCCC
Confidence 999999999999999999999999999996 56999999999999988655 7788888776 455554443 3
Q ss_pred ChHHHH
Q 038217 611 TPRGKE 616 (715)
Q Consensus 611 s~~~ke 616 (715)
+++..+
T Consensus 298 Dedl~e 303 (312)
T PF03224_consen 298 DEDLTE 303 (312)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 444443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-09 Score=109.88 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~ 357 (715)
.+-+-++|-||.++|.-|++++||||||..||..++.. ++.||.|..++....+..|+.+..+|+.|..-
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999988 89999999999999999999999999877543
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=100.73 Aligned_cols=245 Identities=19% Similarity=0.118 Sum_probs=169.3
Q ss_pred HHhhChhhHHHHHHc---CChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhh------cCcHHHHHHHHhc
Q 038217 417 LAKTGKENRAFIAKA---GAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDE------EGCLGSIVKVLRF 485 (715)
Q Consensus 417 La~~~~~~r~~i~~~---G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~------~g~i~~Lv~lL~~ 485 (715)
+-+...+.|..+.+. +....++.+|+. ++.++..+.+..+..+..++..+..+... .....+++.++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~ 116 (312)
T PF03224_consen 37 LDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR 116 (312)
T ss_dssp HHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-
T ss_pred HHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC
Confidence 333334445445543 346677777764 58899999999999987766554433312 2368899998888
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCCccHHHHHHhCChH
Q 038217 486 GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG----TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVT 561 (715)
Q Consensus 486 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~ 561 (715)
+ +.-....|+.+|..|............ .+.++.+++++.+. +.+....|+.+|.+|...++.|..+.+.|+++
T Consensus 117 ~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 117 N-DSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVS 194 (312)
T ss_dssp S-SHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHH
Confidence 8 999999999999999887776655544 56788888888752 23456889999999999999999999999999
Q ss_pred HHHHhh------CC---hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCH
Q 038217 562 ALVGAL------GH---EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 562 ~Lv~lL------~~---~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
.++.+| ++ ..++-+++-+++.|+.+++....+...+. |+.|+++++. ...++.+-++++|.|+......
T Consensus 195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~-i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYL-IPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSH-HHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccch-HHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 999999 22 37888999999999999999999999885 9999999987 5688899999999999988765
Q ss_pred HHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHH
Q 038217 632 SATERVLKAPALVGLLQALLFTG--TKRARRKAASL 665 (715)
Q Consensus 632 ~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~l 665 (715)
.....++. .|+.+.|..|.... ++...+--..+
T Consensus 274 ~~~~~mv~-~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 274 SNIELMVL-CGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp THHHHHHH-H-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHH-ccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 57777777 77777776666544 66666554443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.1e-07 Score=93.23 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..-.+..|+..|.+.+..++..|+..|..+-. ..+++.+..++.+.++.++..|+.+|..|......
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 33456677777777777777777776654431 23445556666666777777777777665432211
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH---------------------------HHHhcccCcHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK---------------------------KKIADESGAVE 520 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~---------------------------~~I~~~~g~I~ 520 (715)
...+++.|..++....+..+|..|+.+|.++....... ..++. ..+++
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~ 162 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIP 162 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHH
Confidence 12344555555333335666666666666653211100 01111 33455
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~ 598 (715)
.|+.+|.+.++.++..|+.+|.++..... .+++.|+.+|. +..++..|+..|..+-. ..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~a 224 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRV 224 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhH
Confidence 55555555555555555555554411110 23444555554 33555555555544311 122
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHH
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLAR 667 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~ 667 (715)
|+.|++.+.++. .+..|+.+|..+.. .-.++.|..++. +.+++++++|.+.++
T Consensus 225 -v~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 -LSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -HHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 566666665443 23334444333221 114777888886 668888888877664
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-09 Score=76.08 Aligned_cols=38 Identities=37% Similarity=0.910 Sum_probs=33.4
Q ss_pred CccCcccccCce-eCCCccHhhHHHHHHHHHhCCCCCCCC
Q 038217 294 CPIMLDLMRDPV-IISTGQTYDRRSIARWMEEGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c 332 (715)
||||.+.+.+|+ .++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 899999999995 6799999999999999998 7899987
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-09 Score=82.91 Aligned_cols=60 Identities=20% Similarity=0.408 Sum_probs=34.9
Q ss_pred CCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHH
Q 038217 289 PKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLI 351 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i 351 (715)
++-++|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|+.|....++.-|..+.++|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3467999999999999976 99999999999875543 599999999999999999999886
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.3e-06 Score=92.41 Aligned_cols=258 Identities=16% Similarity=0.204 Sum_probs=197.5
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCch---
Q 038217 391 TAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDK--- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~--- 464 (715)
+|+.|+.++.+ .-.+.|+.|+..|..+++ .+|..+. +-|+++|+..|.. .|+++...++.+++++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 89999999974 467889999999999995 5666655 5678999999976 589999999999999977663
Q ss_pred ---h-h----------hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhc
Q 038217 465 ---N-K----------SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 465 ---n-k----------~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+ + +.++...+-|..++..+... +.-+|..+...|.+|-... +.+..+...+-+|..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 13333678899999999887 8899999999999885533 4677777768999999999998
Q ss_pred CChhHHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhC-----Ch-hHHHHHHHHHHHHhCCcchHHHHhhhCCcHH
Q 038217 529 GTPRGKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALG-----HE-GVAEEAAGALALIVRQPIGAAAVGEEEMAVT 601 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~-----~~-~~~~~al~~L~~La~~~e~~~~i~~~g~~I~ 601 (715)
..+..+-+|+-.|..|+.+..+..++|.. +++..|..++. |+ -+++.|+..|-||-.....-+.+...|+.||
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 77888999999999999998888888765 89999999995 44 5789999999999886665555656666699
Q ss_pred HHHHHhhc---CChHH----------HHHHHHHHHHHHhcCC-----HHHHHHHHhcCCcHHHHHHHhhcC
Q 038217 602 GLVGMMRC---GTPRG----------KENAVAALLELCRSGG-----ASATERVLKAPALVGLLQALLFTG 654 (715)
Q Consensus 602 ~Lv~lL~~---~s~~~----------ke~A~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~s~ 654 (715)
.|..+|.. |+.+. -..|+.++..+...+. ..+++++.. .+++..|..++-+.
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHP 327 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCC
Confidence 99987765 33211 2233344444444331 124456666 88899998877554
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=92.73 Aligned_cols=274 Identities=13% Similarity=0.075 Sum_probs=195.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CC-------HHHHHHHHHHHhhhhcC
Q 038217 392 AELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HN-------PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 392 i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d-------~~~~~~A~~aL~nLs~~ 462 (715)
+..+++.|.+. .++...-....+...+ +|+..+-.+++.|.++.++.++.. ++ ...-..+.....-|...
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 34555666543 3333333444444444 788999999999999999999975 22 12223344444445555
Q ss_pred chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-----CChhHHHHH
Q 038217 463 DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-----GTPRGKKDA 537 (715)
Q Consensus 463 ~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-----~~~~~~~~A 537 (715)
++.-..+......+..+++.+.+. +......++-+|.|++..|+++..+++ .|.+..|+.+|.. |+.+.+..+
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 665444541333899999999998 889999999999999999999999999 9999999999853 567888999
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChH-
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPR- 613 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~- 613 (715)
+.+|+||.....||..++.+|++..++..++ .+.++..-++.|+.+....+ ...++.+....+..|++.-++.+-.
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 9999999999999999999999999999996 67899999999998865444 5556666666677888877764322
Q ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGG-ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.--.+...|.-+.+++. ..+...+-+ .|++..++.+.....-.-+.-|.-.|-.+
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 33344455555555531 234555666 77888888887766555555554433333
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-06 Score=90.75 Aligned_cols=272 Identities=12% Similarity=0.052 Sum_probs=191.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNKSRIMDE 472 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk~~I~~~ 472 (715)
.++..|..++.-.+..|...|..+...++.+.......-....|...|++. +...+.-|+.+|..|...+..|..+. +
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-~ 183 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-L 183 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-H
Confidence 344677888888899999999888865443311111111334555666653 57888889999999999999999998 8
Q ss_pred cCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhcCC--
Q 038217 473 EGCLGSIVKVLRFGL-TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-- 548 (715)
.++++.|+.+|+... +...+.+++-+++-||-.++....... .+.|+.|+++++... +.+..-++.+|.||....
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 889999999998753 568899999999999998886666655 899999999998754 678889999999998743
Q ss_pred -----ccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHH-------HHHhCC------------------------cc
Q 038217 549 -----DNCVRMIEAGAVTALVGALG----HEGVAEEAAGAL-------ALIVRQ------------------------PI 588 (715)
Q Consensus 549 -----~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L-------~~La~~------------------------~e 588 (715)
.....|+..|..+.+-.+.. |+++.+..-.+- ..+++. .+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456777776554444432 555433222111 222211 13
Q ss_pred hHHHHhhhCC-cHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 589 GAAAVGEEEM-AVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 589 ~~~~i~~~g~-~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
+...+-+.+. .+..|+++|.. .++.....|+.=+..++++-| ..+..+.+ .|+=..+++|+.+.++.++..|-..+
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444433332 46788888853 567777777777888888863 34444444 89999999999999999999987665
Q ss_pred HHH
Q 038217 667 RVF 669 (715)
Q Consensus 667 ~~l 669 (715)
+.|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 544
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-06 Score=96.63 Aligned_cols=255 Identities=18% Similarity=0.161 Sum_probs=192.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHH-hhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLA-KTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La-~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+..|+..|... ++..|.+|+.+|..+. ..|.+.-..|.-.-++|.|+.+|+. .+.+++.+|+.+|.+|+..- ...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 567888888854 8888999999987644 4444444444455689999999998 57999999999999998754 556
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++ +.++||.|+.-|..=...++-+.++.+|..+|..+ -..|.+ .|++-..+..|.=-+..++..|+.+..|.|.
T Consensus 248 a~vV-~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVV-DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heee-cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777 89999999998876547899999999999998743 455666 7999988888765567889999999999986
Q ss_pred C--CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC----cchHHHHhhhCCcHHHHHHHhhcC----ChHH
Q 038217 547 H--TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ----PIGAAAVGEEEMAVTGLVGMMRCG----TPRG 614 (715)
Q Consensus 547 ~--~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~----~e~~~~i~~~g~~I~~Lv~lL~~~----s~~~ 614 (715)
. ++.-..+++ ++|.|..+|+ |...++.++-.+..++.. ++--++++..+- |....++|... +...
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dL-i~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDL-ITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhH-HHHHHHHHhcCcccccccc
Confidence 3 444444444 4999999996 778888888888888652 345567788887 89888887653 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC
Q 038217 615 KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG 654 (715)
Q Consensus 615 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~ 654 (715)
.---+..|..+|.++ .-....+.+ .++...|..++..-
T Consensus 401 ~~~vIrmls~msS~~-pl~~~tl~k-~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGS-PLLFRTLLK-LDIADTLKRILQGY 438 (1051)
T ss_pred hhHHHHHHHHHccCC-hHHHHHHHH-hhHHHHHHHHHhcc
Confidence 444556666777776 445566767 88999998888643
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-06 Score=86.40 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=148.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGS 478 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~ 478 (715)
.+.+.+.+..|+..|..++ ++.+|...+...|+..+|+.+|.+++..+++.|+++|...+.++ ..+..++ +.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~-E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVI-ELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HcccHHH
Confidence 3668999999999999999 56899999999999999999999999999999999999998776 5578888 9999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCC-ccHHHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHT-DNCVRM 554 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~-~n~~~i 554 (715)
|+..|.+..+..++..|+.++.+|-.+.. .....-. .++...|.+.++++ +...+..++..+..|.... .....+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999987678889999999999988766 4444444 67799999999984 4688999999999998644 445544
Q ss_pred HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 555 IEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 555 v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
-..|....++.+.. +.++.+.++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 45566666666654 55677777777665544
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-08 Score=99.22 Aligned_cols=60 Identities=27% Similarity=0.497 Sum_probs=53.1
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCccccccCCCCccHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRLVPNRAL 347 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~~l~pn~~l 347 (715)
.-..|.|-||++.-+|||++.|||-||-.||.+|+.. ....||+|+..++.+.++|-+..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 3458999999999999999999999999999999985 35678999999999999887654
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-08 Score=99.31 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~ 356 (715)
+-.-++|-||.++++-|++++||||||..||.+++.. ++.||.|+.+.....+..+..++.+++.|..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3345799999999999999999999999999999988 8899999998888888888888888877754
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-08 Score=72.21 Aligned_cols=39 Identities=36% Similarity=0.958 Sum_probs=36.3
Q ss_pred CccCcccccCce-eCCCccHhhHHHHHHHHH-hCCCCCCCC
Q 038217 294 CPIMLDLMRDPV-IISTGQTYDRRSIARWME-EGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~-~~~~~CP~c 332 (715)
||||++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 779999999999999999 567889987
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-08 Score=73.02 Aligned_cols=36 Identities=19% Similarity=0.685 Sum_probs=23.4
Q ss_pred CccCcccccC----ceeCCCccHhhHHHHHHHHHhC---CCCCC
Q 038217 294 CPIMLDLMRD----PVIISTGQTYDRRSIARWMEEG---HRTCP 330 (715)
Q Consensus 294 CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~---~~~CP 330 (715)
||||.+ |.+ |+.++|||+||+.|+++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 45676
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-08 Score=98.43 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=49.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
...+..+.|.+|++-+.+|..++|||.||-+||..|+.+ ...||.||..+.+.++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 456667999999999999999999999999999999998 6679999999887765
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-08 Score=96.97 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=40.6
Q ss_pred CCCCcCccCcccccCc--------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDP--------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP--------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.++..||||++.+.++ ++.+|||+||+.||.+|+.. ..+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4467999999987764 45589999999999999986 789999998764
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-08 Score=73.77 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=40.9
Q ss_pred CCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+++.|+||++...++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 36789999999999999999999 999999999995 889999998764
|
... |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-05 Score=87.27 Aligned_cols=232 Identities=18% Similarity=0.146 Sum_probs=169.9
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....|...|+++ +.+.+.-|+..+..+.+. +..|..+.+.++++.|+.+|+. .+..++.+++-+++-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 445666777654 466777888999999975 7999999999999999999976 367899999999999999988777
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-------hhHHHHhcccCcHHHHHHHhhc---CChhHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-------EYKKKIADESGAVEALATLLRL---GTPRGKKDA 537 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-------~~~~~I~~~~g~I~~Lv~LL~~---~~~~~~~~A 537 (715)
.+. ..+.|+.++.+++....+.+...+.++|.||.... .....++. .|. +.++..|.. .+++...+-
T Consensus 223 ~~~-~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~l-~~~l~~L~~rk~~DedL~edl 299 (429)
T cd00256 223 VLK-RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CKV-LKTLQSLEQRKYDDEDLTDDL 299 (429)
T ss_pred hhc-cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cCh-HHHHHHHhcCCCCcHHHHHHH
Confidence 776 88999999999998756778899999999998743 23344444 454 455555544 233332221
Q ss_pred HH-------HHHHhhcC------------------------CccHHHHHHhC--ChHHHHHhhC---ChhHHHHHHHHHH
Q 038217 538 VT-------ALFNLSTH------------------------TDNCVRMIEAG--AVTALVGALG---HEGVAEEAAGALA 581 (715)
Q Consensus 538 ~~-------aL~nLs~~------------------------~~n~~~iv~aG--~v~~Lv~lL~---~~~~~~~al~~L~ 581 (715)
-. -+..|++. .+|..++-+.+ ++..|+.+|. |+.+..-|+.=+.
T Consensus 300 ~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 300 KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 11 11222211 13566665543 4788899984 5666666777777
Q ss_pred HHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 582 LIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 582 ~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.++. +|.||..+-+.|+ =..++++|.+.++++|..|+.++-.|-.
T Consensus 380 e~vr~~P~gr~i~~~lg~-K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGG-KQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHCccHHHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8877 5899999988888 7888889999999999999988876643
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=78.03 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.+.+..||.... ..+.+.+.+.+..|.+++. +|.|...+.+.+++...+.-|...|..+.+.++..|+||+.+..|++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 357788888886 6789999999999999997 59999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATL 525 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~L 525 (715)
.|. ++++++.++..+.+. ...+...|+.+|..|+.... .+..+.. +.++..+.+.
T Consensus 94 ~I~-ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 94 FIR-EALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW 149 (173)
T ss_pred HHH-HhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence 999 999999999999997 88888899999999987554 6777766 4444444433
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.9e-08 Score=70.82 Aligned_cols=40 Identities=28% Similarity=0.727 Sum_probs=33.8
Q ss_pred cCccCccccc---CceeCCCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 293 CCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
.||||++-+. .++.++|||.|+..||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999984 4455699999999999999998 67999995
|
... |
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-07 Score=88.02 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=47.1
Q ss_pred CCCCCCCcCccCcccccC--ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 286 LSIPKDFCCPIMLDLMRD--PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~d--Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
.....-|.||||++-+.. ||.+.|||.||+.||...++. ...||+|++.+++..+.+
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 344556999999999876 445699999999999999998 678999999888776544
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-06 Score=93.32 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=50.5
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
...-++||.|..-.+|.|++.|||.||..||++.+....+.||.|+..|...++.|
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34467999999999999999999999999999999998999999999998777654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=84.09 Aligned_cols=172 Identities=16% Similarity=0.084 Sum_probs=120.4
Q ss_pred hhhHHHHHHc----CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 038217 422 KENRAFIAKA----GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAA 497 (715)
Q Consensus 422 ~~~r~~i~~~----G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~ 497 (715)
++++...... -.++.|..+|.+.|..++..|+.+|..+. ...+++.+..+++++ +...|..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~-d~~vR~~A~~ 76 (280)
T PRK09687 9 KASKEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSK-NPIERDIGAD 76 (280)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3455544433 35889999999999999999999987664 455677888888887 9999999999
Q ss_pred HHHHhccCchhHHHHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHH
Q 038217 498 TLFSLSAVHEYKKKIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAE 574 (715)
Q Consensus 498 ~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~ 574 (715)
+|..|...+.. . ..+++.|..+ +++.++.++..|+.+|.+++....+. ...++..+...+. +..++.
T Consensus 77 aLg~lg~~~~~-----~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 77 ILSQLGMAKRC-----Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHHhcCCCccc-----h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHH
Confidence 99998653321 1 3467888877 55667889999999999986533211 1113444555554 457777
Q ss_pred HHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 575 EAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.++.+|..+. ...+ ++.|+.++.+.++.++..|+.+|..+.
T Consensus 147 ~a~~aLg~~~----------~~~a-i~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 147 AVAFALSVIN----------DEAA-IPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHhccC----------CHHH-HHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 7777775442 1123 777777777777777777777777663
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-07 Score=67.47 Aligned_cols=43 Identities=35% Similarity=0.861 Sum_probs=38.7
Q ss_pred cCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 293 CCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.|+||++.+.+|+.+ +|||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 499999999888877 5999999999999999878889999864
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.5e-06 Score=74.63 Aligned_cols=151 Identities=15% Similarity=0.051 Sum_probs=118.2
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
..+-+..||.-.+...+.|+++...+-|.|.+.++.|-..+.+ ..++...++.|...+...++.++..|+|||.++.|.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 4567888888888776899999999999999999988888888 899999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
..|++++++|..+..++++ ...-.++..|..|+.. ..-+.++..... +..+.+.-.+.+...+-.|-..|-.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~V-v~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAV-VRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHH-HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999854 6677788888888653 335566665444 4444443333444444444444433
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-07 Score=97.50 Aligned_cols=71 Identities=28% Similarity=0.539 Sum_probs=61.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
....+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. . ...+.+|..+.+++..+...+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCC
Confidence 45677999999999999998889999999999999999 6789999996 3 2377799999999888776554
|
|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-07 Score=73.15 Aligned_cols=43 Identities=33% Similarity=0.833 Sum_probs=31.7
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHH-hCCCCCCCCc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWME-EGHRTCPKTG 333 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~-~~~~~CP~c~ 333 (715)
.+.|||++..|.+||.- .|||+|++..|.+|+. .+...||..|
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 78999999999999986 9999999999999994 3567899943
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.1e-05 Score=90.84 Aligned_cols=228 Identities=18% Similarity=0.102 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....++.|+..|.+.++.+|..|+..|..+. ..++++.|+.+|++++..++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 3456789999999999999999999887654 2457899999999999999999999997763211
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-----------h--hHHH----HhcccCcHHHHHHHhhcCC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-----------E--YKKK----IADESGAVEALATLLRLGT 530 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-----------~--~~~~----I~~~~g~I~~Lv~LL~~~~ 530 (715)
...+.+...|++. +..+|..|+.+|..+...+ + .+.. ++. .+..+.|..++.+++
T Consensus 684 ------~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 684 ------PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAATDEN 755 (897)
T ss_pred ------CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhcCCC
Confidence 1223455556554 6666666666665543110 0 0000 000 111233344444444
Q ss_pred hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh
Q 038217 531 PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR 608 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~ 608 (715)
+.++..++.+|..+... ....++.|+.+++ |+.++..|+..|..+... ... ++.++..+.
T Consensus 756 ~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~-~~~l~~aL~ 817 (897)
T PRK13800 756 REVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDD-VAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chh-HHHHHHHhc
Confidence 44444444444443221 1122566666665 446666666666665221 111 345666677
Q ss_pred cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 609 CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 609 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.++.+|..|+.+|..+.. ...++.|..++.+.+..++..|...|..+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6677777777777755431 11357788888888888888888777654
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-05 Score=81.36 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=150.0
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHH
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVE 520 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~ 520 (715)
.+.+.+-++.|+.-|..+..+-+|...++ ..|++.+++..++++ +.++|+.|+++|...+.+.. ....+.+ .|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~-~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLI-SLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHh-hccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHH
Confidence 34678889999999999999999999999 999999999999998 99999999999999988666 5555666 89999
Q ss_pred HHHHHhhcCC-hhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHHHHHhCC-cchHHHH
Q 038217 521 ALATLLRLGT-PRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG----HEGVAEEAAGALALIVRQ-PIGAAAV 593 (715)
Q Consensus 521 ~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L~~La~~-~e~~~~i 593 (715)
.|+.++...+ ...+..|+.|+++|-.+. .....+...++...|...|. +..++..++..+..|... ......+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999998655 467799999999999864 47888999999999999996 347888999999998763 3344433
Q ss_pred hhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 594 GEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 594 ~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
...+. ...++.+..+.....+++|+.++..+...
T Consensus 250 ~~~~f-~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGF-QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhh-hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 34444 56666677778899999999988777665
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-07 Score=63.07 Aligned_cols=39 Identities=41% Similarity=1.037 Sum_probs=36.2
Q ss_pred CccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCC
Q 038217 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKT 332 (715)
Q Consensus 294 CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c 332 (715)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999667889986
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-05 Score=82.70 Aligned_cols=262 Identities=17% Similarity=0.188 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch-
Q 038217 389 RATAELLIQQLANGSPRA--KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~--~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~- 464 (715)
++.+..|++++.+.+.+. +.+|.+.|..+.. .+|+..++..| ...++.+-+. ..++.+...+.+|.++-.+++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 467788999999887776 7889998888774 68999999887 4445554443 567889999999999988774
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
....++ ..|++..++-..+.. ++.+..+++-+|.|.+.+. ..+..|++ ..+-+-|+-|-.+.++-.+-.|+.+.+
T Consensus 256 t~~~Lv-aa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 256 TCQRLV-AAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred HHHHHH-hhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 478888 899999999888887 8899999999999887644 57888888 788888888877777777889999999
Q ss_pred HhhcCCccHHHHHHhCChH---HHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 543 NLSTHTDNCVRMIEAGAVT---ALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~---~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
-|+.+.+.-..+.+.|.+. +++..+ |+. ..+.+ ....+-.+....+..|+.+|++. +.-..++
T Consensus 333 vlat~KE~E~~VrkS~TlaLVEPlva~~-DP~----------~FARD-~hd~aQG~~~d~LqRLvPlLdS~--R~EAq~i 398 (832)
T KOG3678|consen 333 VLATNKEVEREVRKSGTLALVEPLVASL-DPG----------RFARD-AHDYAQGRGPDDLQRLVPLLDSN--RLEAQCI 398 (832)
T ss_pred hhhhhhhhhHHHhhccchhhhhhhhhcc-Ccc----------hhhhh-hhhhhccCChHHHHHhhhhhhcc--hhhhhhh
Confidence 9999888776666776543 333333 331 11111 01111112223578899999743 3333344
Q ss_pred HHHHHHHhcC---CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 620 AALLELCRSG---GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 620 ~~L~~L~~~~---~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++ ..+|... ..+....+..+-|.|..|.++..+.+..+..-|...|+++.+
T Consensus 399 ~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 399 GA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 44 3445432 112223444558899999999998777777888889988865
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-07 Score=95.42 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=62.9
Q ss_pred CCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc-cCCCCccHHHHHHHHHHHHh
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV-HDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~~~ 357 (715)
+..+.-+|.||||+++++..+++ .|+|.||+.||.+-+..|+..||.|++.+. ...|.++.....+|.+....
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 34567789999999999999988 899999999999999999999999999975 45688888888888776544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.8e-05 Score=86.21 Aligned_cols=249 Identities=16% Similarity=0.193 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~~I 469 (715)
.++.+...|.+.++.+|++|+..+..+.+.+++. +... .++.+.++|.+.|+.++..|+.++..+ ..++ .-..+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 3344444444555555555555555555443332 1111 355555555555555555555555555 1111 00111
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ...+..|..++... ++-.+..++.+|..++........- ...++.+..++++.++.+.-.++.++..+.....
T Consensus 190 ~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 190 I--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp H--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred H--HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 1 22333333333333 4444555555555444433322211 3455555555554445555555555555544333
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAVAALLELC 626 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~ 626 (715)
.-..+++.|+.+|. ++.++-.++..|..++... ...+. . ....+..+. +.+...|..++.+|..++
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---N-QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 22335666666664 3456666666666665432 22222 2 233334444 456666666666666666
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 038217 627 RSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQ 670 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~ 670 (715)
.. ..+. . +++.|...+. .+++..++.+...+..+.
T Consensus 333 ~~--~n~~-~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 333 NE--SNVK-E------ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp -H--HHHH-H------HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cc--cchh-h------HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 53 2221 1 2333555553 335555555554444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.6e-07 Score=86.08 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCCCCcCccCcccccC---------ceeCCCccHhhHHHHHHHHHhC-----CCCCCCCccccc
Q 038217 287 SIPKDFCCPIMLDLMRD---------PVIISTGQTYDRRSIARWMEEG-----HRTCPKTGQMLV 337 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~d---------Pv~~~cghtfcr~cI~~w~~~~-----~~~CP~c~~~l~ 337 (715)
...++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45568899999998644 3455999999999999999852 356999998764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00018 Score=87.92 Aligned_cols=227 Identities=22% Similarity=0.191 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-----
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD----- 463 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~----- 463 (715)
...++.|+..|++.+..++..|+..|..+...- ...+.|...|.+.|+.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 456788999999999999999988887764211 11245555566666666666666555432110
Q ss_pred ------hh--hhhhhh---hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChh
Q 038217 464 ------KN--KSRIMD---EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 464 ------~n--k~~I~~---~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
+. |...+. ..+..+.|...+... +.++|..++.+|..+... ....++.|..+++++++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHH
Confidence 00 000000 112233445555555 666666666666655432 134578999999998999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG 610 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~ 610 (715)
++..|+.+|.++.... .+++.++..|+ +..++..|+.+|..+. .... ++.|+.+|.+.
T Consensus 791 VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a-~~~L~~~L~D~ 850 (897)
T PRK13800 791 VRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVA-VPALVEALTDP 850 (897)
T ss_pred HHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccch-HHHHHHHhcCC
Confidence 9999999998874321 12355777886 4478888999998763 2233 79999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 611 TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 611 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
+..+|..|+.+|..+- .. +. ..+.|...+.+.+..+++.|...|+
T Consensus 851 ~~~VR~~A~~aL~~~~-~~-~~----------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 851 HLDVRKAAVLALTRWP-GD-PA----------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHhccC-CC-HH----------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999997761 11 21 2455777888899999999988775
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.2e-07 Score=90.81 Aligned_cols=66 Identities=17% Similarity=0.428 Sum_probs=56.8
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC----CCCccHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD----RLVPNRALRNLIV 352 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~ 352 (715)
.++.....|++|..+|.|+.++ .|-||||++||.+++.. ..+||.|+..+..+ .+.++..|+.++.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence 4566788999999999999988 79999999999999999 89999999777554 4677788887765
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00023 Score=81.81 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=172.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.+...|.+.++.++..|+..+..+ +.++.... -.-...+..|.+++...++-.|...+..|..++..+.....
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~-- 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD-- 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--
Confidence 478888888888899999999888888 33333322 11123444445555678999999999999888766553321
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
....++.+..+|++. +..+...|+.++..+..... .. ..+++.|++++.+.++..+-.++..|..++...
T Consensus 229 -~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~-~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-- 298 (526)
T PF01602_consen 229 -KNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LL-QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-- 298 (526)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--
T ss_pred -HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HH-HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--
Confidence 157889999999877 88888889999998887666 22 468999999998777888888999998888754
Q ss_pred HHHHHHhCChHHHHHhh--C-ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGAL--G-HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAVAALLELC 626 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL--~-~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~ 626 (715)
...+. . ....+..+ . |..++..++.+|..++. +++...| ++.|...+. ..++..++.++..+..++
T Consensus 299 -~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~I------l~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 299 -PPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEI------LDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp -HHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHH------HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred -chhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhH------HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 33333 2 22222333 2 56889999999999874 4444442 677888774 457789999999998888
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHH-HHHHHHHHHHHHhh
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRAR-RKAASLARVFQRCE 673 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k-~~A~~lL~~l~~~~ 673 (715)
...+. .. - -.++.++.++..+.+... .....+.+++.+..
T Consensus 369 ~~~~~-~~--~----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~ 409 (526)
T PF01602_consen 369 EKFPP-DA--E----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP 409 (526)
T ss_dssp HHHGS-SH--H----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST
T ss_pred hccCc-hH--H----HHHHHHHHhhhhccccccchHHHHHHHHhhcCh
Confidence 65421 11 1 137779999987655555 44456777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-05 Score=85.44 Aligned_cols=213 Identities=17% Similarity=0.209 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
+..++.||..|+ ..+.+.+..|+++|.+++.--|.....+++.|+||.|+. |+.-.-.++.|.++.+|-.++....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 458899999998 568999999999999999988999999999999999986 5555788999999999999987654
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
..|. .+|++-..+..|.-- +..++..|.++..|.+. ..+.-..++ .++|.|..+|...+....+.++.++..+
T Consensus 288 ~AiL-~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 KAIL-QAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHH-hcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 6677 899999999999876 78899999999999875 333444443 4899999999988888888888888777
Q ss_pred hcC----CccHHHHHHhCChHHHHHhhC------ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhc
Q 038217 545 STH----TDNCVRMIEAGAVTALVGALG------HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 545 s~~----~~n~~~iv~aG~v~~Lv~lL~------~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+.. ++--.++...|.|....++|. +..+-...+..|..+|+. +.....+.+.+- ...|-.+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I-~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDI-ADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhH-HHHHHHHHhc
Confidence 642 334556788899999999985 235556667777788774 778888887776 6677666653
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00064 Score=69.81 Aligned_cols=269 Identities=17% Similarity=0.171 Sum_probs=187.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
...++..|.+.++.++..|+..+-.++.. ..+.+... .-.++.+.+++...++ -+.|+++|.|++.+..-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45788999999999999999988888754 45555543 3678889999987666 6789999999999998888888
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcc-c----CcHHHHHHHh-hcC-Ch-hHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADE-S----GAVEALATLL-RLG-TP-RGKKDAVTALF 542 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-~----g~I~~Lv~LL-~~~-~~-~~~~~A~~aL~ 542 (715)
.. .+..+++++.+. ....-..++.+|.||+..++....+... . .++..|++-. ..+ +. .-...-+-.+.
T Consensus 81 -~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 -QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred -HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 55 888888888876 5567778899999999988765554321 1 3344444433 322 21 23445677788
Q ss_pred HhhcCCccHHHHHHhCChHH--HHHhhC-ChhH-HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHH--------------
Q 038217 543 NLSTHTDNCVRMIEAGAVTA--LVGALG-HEGV-AEEAAGALALIVRQPIGAAAVGEEEMAVTGLV-------------- 604 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~~--Lv~lL~-~~~~-~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv-------------- 604 (715)
||+.....|..+.....++. ++.+=+ +..+ +...+++|.|.|........++. .. +..|.
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~-~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ES-INLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-ch-HHHHHHHHhhcCCccccCH
Confidence 99998888888776653332 222222 2233 24467888898876666666655 32 33332
Q ss_pred ----------HHhhc-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 038217 605 ----------GMMRC-----GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARV 668 (715)
Q Consensus 605 ----------~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~ 668 (715)
+++-. .++.++..-+.+|+.||.. ...++.+.. -|+.+.|.++=... ++.+++++-.+.++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22221 3577788899999999987 556778877 88888777766554 77888888888888
Q ss_pred HHHh
Q 038217 669 FQRC 672 (715)
Q Consensus 669 l~~~ 672 (715)
+-+-
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 8763
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=88.18 Aligned_cols=62 Identities=19% Similarity=0.410 Sum_probs=46.9
Q ss_pred CCCcCccCccc-ccCce---eC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCC----CCccHHHHHHH
Q 038217 290 KDFCCPIMLDL-MRDPV---II-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR----LVPNRALRNLI 351 (715)
Q Consensus 290 ~~~~CpIc~~l-m~dPv---~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~----l~pn~~l~~~i 351 (715)
++..||+|..- ...|- .+ +|||.||.+|+.+.|..|...||.|+.++.... +.++..+...|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 46789999972 33443 23 699999999999999888889999999988776 44555544433
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-06 Score=93.32 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=57.9
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHh----CCCCCCCCccccccCCCCccH----HHHHHHHHHHHhcCC
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVHDRLVPNR----ALRNLIVQWCTAHGI 360 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~~~l~pn~----~l~~~i~~~~~~~~~ 360 (715)
+..||||++...-|+.+.|||.||-.||.++|.. +...||.|+..+..+++.|-+ .-+..+..++..||+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 8899999999999999999999999999999986 457899999998887765543 333447777888884
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-06 Score=61.98 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=34.9
Q ss_pred cCccCcccc---cCceeCCCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 293 CCPIMLDLM---RDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 293 ~CpIc~~lm---~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 356677999999999999998 44779999974
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-06 Score=84.30 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHH-HHHhCCCCCCCCccccccCCC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIAR-WMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~-w~~~~~~~CP~c~~~l~~~~l 341 (715)
+..+|.|+||++.+.+|+.++|||.||-.||.. |-......||.||+......+
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 367999999999999999999999999999999 877766679999987655443
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00028 Score=75.23 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=171.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 392 AELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 392 i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...|...+++ .+.+...-|+++|+.+.+. ++.|..++.++++..|+..|.+ .+..+|.+.+-+++.|+.++.-.+.
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~ 236 (442)
T KOG2759|consen 158 KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK 236 (442)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence 4566666665 6777788899999999976 7999999999999999998843 5789999999999999999988777
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-------hHHHHhcccCcHHHHHHHhhcC---ChhHHHHHH
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-------YKKKIADESGAVEALATLLRLG---TPRGKKDAV 538 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A~ 538 (715)
+. .-+.|+.|+++++......+..-.++++.||....+ ....+. .+.++.-++.|... +++...+--
T Consensus 237 ~~-~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~ 313 (442)
T KOG2759|consen 237 LK-RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIE 313 (442)
T ss_pred Hh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHH
Confidence 76 899999999999986566777889999999976552 223333 35666666666542 233222211
Q ss_pred H-------HHHHhhcC------------------------CccHHHHHHh--CChHHHHHhhC---ChhHHHHHHHHHHH
Q 038217 539 T-------ALFNLSTH------------------------TDNCVRMIEA--GAVTALVGALG---HEGVAEEAAGALAL 582 (715)
Q Consensus 539 ~-------aL~nLs~~------------------------~~n~~~iv~a--G~v~~Lv~lL~---~~~~~~~al~~L~~ 582 (715)
. -...||+. .+|..++-+. ..+..|+++|. |+.+..-|+.=+..
T Consensus 314 ~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge 393 (442)
T KOG2759|consen 314 FLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGE 393 (442)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHH
Confidence 1 11222222 1355555443 35888999995 56666666666666
Q ss_pred HhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 583 IVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 583 La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
..+ .|+|+..+.+.|| =..++++|.+.++++|-+|+.++..|-.+
T Consensus 394 ~Vr~yP~gk~vv~k~gg-Ke~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 394 YVRHYPEGKAVVEKYGG-KERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhCchHhHHHHHhch-HHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 666 6999999999999 89999999999999999999988766543
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.5e-06 Score=81.35 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=61.4
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccc-cccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQM-LVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~-l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
+.||+|..++++|+-+ +|||+||..||+..+....+.||.|... +-...+.|++..+..|+.+...+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~~~ 347 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRKKV 347 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988 8999999999999999889999999763 445679999999999998887554433
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.97 E-value=1e-05 Score=58.69 Aligned_cols=40 Identities=40% Similarity=0.555 Sum_probs=38.4
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhh
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs 460 (715)
+++++..+++.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00061 Score=78.07 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=163.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh---HHHHHHcCChHHHHHhhcc-------CCHHHHHHHHHHHhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKEN---RAFIAKAGAIPHLRNLLST-------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~---r~~i~~~G~i~~Lv~lL~s-------~d~~~~~~A~~aL~nLs 460 (715)
.+...+..|++.+.+.+..++--+.++.+.++.+ +..+.++=+.+.|-+||.+ +....+.-|+++|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 5778889999888888899999999999877643 4457787667999999987 23567888999999999
Q ss_pred cCchh--hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHH
Q 038217 461 IYDKN--KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAV 538 (715)
Q Consensus 461 ~~~~n--k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~ 538 (715)
.+++- -..++ +-||.|++++.++.+.+....|..+|..++..++.+..+.. .|+|+.|++.+.+ .+.....|+
T Consensus 86 ~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 RDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred CChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHH
Confidence 87765 35555 78999999998873449999999999999999999999999 9999999999976 677889999
Q ss_pred HHHHHhhcCCccHHHHHHh----CChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHH----HHh
Q 038217 539 TALFNLSTHTDNCVRMIEA----GAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLV----GMM 607 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~a----G~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv----~lL 607 (715)
.+|.+|+...+....--.. .+++.+-..+. ....+-..+..|..+-...+.. ........|+..+. .++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9999998754411110111 23344444443 3345566777777764433211 11223333344443 455
Q ss_pred hc-CChHHHHHHHHHHHHHHh
Q 038217 608 RC-GTPRGKENAVAALLELCR 627 (715)
Q Consensus 608 ~~-~s~~~ke~A~~~L~~L~~ 627 (715)
++ -++..|..|+.+...|..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 55 367777777665555544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0046 Score=67.50 Aligned_cols=268 Identities=17% Similarity=0.202 Sum_probs=194.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
.+...+-+++.+++..+.+.+|.+.. +...-..+.+.+.=-.++.-|.. ++..-+++|+..+..+....++...+-
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~- 106 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP- 106 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC-
Confidence 33334445558888889999998886 46777777887766667776754 345568899999988877665555554
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
.|++..+|.+.... +...+..|.++|..|+..+. ..+.. .|++..|++.+.++..+.....+.++..+-..+..|
T Consensus 107 -~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 107 -RGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 78999999999987 88899999999999988543 23333 899999999998877678888888899998888888
Q ss_pred HHHHHhCChHHHHHhhC---------Ch--hHHHHHHHHHHHHhCCcchHHHHhhhC-CcHHHHHHHhhcCChHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG---------HE--GVAEEAAGALALIVRQPIGAAAVGEEE-MAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~---------~~--~~~~~al~~L~~La~~~e~~~~i~~~g-~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
..+...--+..++.-+. +. +....+..++..+-++..|--.+...+ .++..|+..|...+++.|+..+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 76654333444444442 11 234555666666656777777766554 2389999999888888999888
Q ss_pred HHHHHHHhcC-----------------CH----------------------------------HHHHHHHhcCCcHHHHH
Q 038217 620 AALLELCRSG-----------------GA----------------------------------SATERVLKAPALVGLLQ 648 (715)
Q Consensus 620 ~~L~~L~~~~-----------------~~----------------------------------~~~~~l~~~~g~i~~L~ 648 (715)
.++..+-.-. +. -....+.+ .|+++.|+
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L~ 340 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEALV 340 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHHH
Confidence 8877763311 00 01234556 99999999
Q ss_pred HHhhcC-CHHHHHHHHHHHHHH
Q 038217 649 ALLFTG-TKRARRKAASLARVF 669 (715)
Q Consensus 649 ~Ll~s~-~~~~k~~A~~lL~~l 669 (715)
++..+. ++...+||.-||.-+
T Consensus 341 ~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHH
Confidence 999988 888899998877644
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0012 Score=75.05 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCh------------hhHHHHHH-----cCChHHHHHhhccCCHHHHH
Q 038217 390 ATAELLIQQLAN--GSPRAKTVAAREIRLLAKTGK------------ENRAFIAK-----AGAIPHLRNLLSTHNPVAQE 450 (715)
Q Consensus 390 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~------------~~r~~i~~-----~G~i~~Lv~lL~s~d~~~~~ 450 (715)
.+++.|+.-|+. .+++....++..+..+..+++ +.-.||++ .+.|..|+.++...|..++.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 356777888874 478888888888888876542 22234443 48899999999999999999
Q ss_pred HHHHHHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc
Q 038217 451 NSVTAMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 451 ~A~~aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
.|+..|.+|-... +-+..+...+-+|..|+.+|... ...+|-.|.-.|..|+.....-.++++..+++..|+.++.+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999986554 44666664799999999999886 66778888899999999999888998888999999999976
Q ss_pred CC-h---hHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhC-----Ch----------hHHHHHHHHHHHHhCC--
Q 038217 529 GT-P---RGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALG-----HE----------GVAEEAAGALALIVRQ-- 586 (715)
Q Consensus 529 ~~-~---~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~-----~~----------~~~~~al~~L~~La~~-- 586 (715)
+. . -+..+++..|-||-.+ ..|...+.+.|.||.|.++|. |+ .-...++.++..|+.-
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 32 2 3588999999999874 569999999999999999985 42 1134577777777651
Q ss_pred -----cchHHHHhhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHHHhcC
Q 038217 587 -----PIGAAAVGEEEMAVTGLVGMMRCG--TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 587 -----~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~ 629 (715)
..+..++...+. +..|..++.+. ..+++..+.-++.++.+++
T Consensus 300 t~~~~~q~qk~l~ss~l-l~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHL-LDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred cHHHHHHHHHHHHHcch-HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 123345566666 89999976653 5677888888888888775
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=81.77 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=124.2
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch----hHHHHhcccCcHHHHHHHhhcCC-------hhHHHHHHHHH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE----YKKKIADESGAVEALATLLRLGT-------PRGKKDAVTAL 541 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~I~~~~g~I~~Lv~LL~~~~-------~~~~~~A~~aL 541 (715)
.-.++..+.+|+.. +.+-|-.++..+..+...++ .+..|.+ .=+.+.|-+||+.+. ...+..|+..|
T Consensus 4 ~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 4 SASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred hHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 34577788899988 67888888999999987665 2344666 555799999998732 35677899999
Q ss_pred HHhhcCCcc--HHHHHHhCChHHHHHhhC--Ch-hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHH
Q 038217 542 FNLSTHTDN--CVRMIEAGAVTALVGALG--HE-GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKE 616 (715)
Q Consensus 542 ~nLs~~~~n--~~~iv~aG~v~~Lv~lL~--~~-~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke 616 (715)
..+|..++. ..+|+. -||.|++.+. +. .+...|+.+|..++.+++|+.++++.|+ |+.|++.+.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~-v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGA-VPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCC-HHHHHHHHHh-CcchHH
Confidence 999997764 455554 4999999995 44 8999999999999999999999999999 9999999886 778899
Q ss_pred HHHHHHHHHHhcCC
Q 038217 617 NAVAALLELCRSGG 630 (715)
Q Consensus 617 ~A~~~L~~L~~~~~ 630 (715)
.|+.+|.+++...+
T Consensus 158 ~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 158 IALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00094 Score=77.53 Aligned_cols=242 Identities=17% Similarity=0.218 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH----cCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAK----AGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIV 480 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv 480 (715)
...-++.+|+|+.+.+|+....+.. .|..+.+..+|.. +++.+|.-|+.++..+..+.+.-..|+ ..|++..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a-~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLA-TCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHH-hhhHHHHHH
Confidence 4466899999999999987766653 3777888888865 788999999999999999988889999 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhhc-------------
Q 038217 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLST------------- 546 (715)
Q Consensus 481 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~------------- 546 (715)
.+|.+ -+..|+.++.+|..|+++...-+.... .|++.-+..++...+ ++.+..|+..|..|..
T Consensus 1820 ~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1820 TLLHS--QPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 99988 567899999999999998876666655 666665554443211 2222222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 038217 547 -------------------------------------------------------------------------------- 546 (715)
Q Consensus 547 -------------------------------------------------------------------------------- 546 (715)
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence
Q ss_pred -----------------------------------------------------------CCccHHHHHHhCChHHHHHhh
Q 038217 547 -----------------------------------------------------------HTDNCVRMIEAGAVTALVGAL 567 (715)
Q Consensus 547 -----------------------------------------------------------~~~n~~~iv~aG~v~~Lv~lL 567 (715)
++.-..++-..|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 111111122224555555554
Q ss_pred C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHH
Q 038217 568 G--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVG 645 (715)
Q Consensus 568 ~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~ 645 (715)
. +..+-..|+.+|..|+.+.-+..++.+... +..++..|.. .+..-..|+.+|..+......+...+..+ .|+++
T Consensus 2057 ~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~-i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC-IDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVP 2133 (2235)
T ss_pred HhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc-chhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHH
Confidence 2 233447789999999988889999988877 7888887764 23333488888888877665667778888 99999
Q ss_pred HHHHHhhcC
Q 038217 646 LLQALLFTG 654 (715)
Q Consensus 646 ~L~~Ll~s~ 654 (715)
.|+.|+...
T Consensus 2134 yLL~LLd~~ 2142 (2235)
T KOG1789|consen 2134 YLLQLLDSS 2142 (2235)
T ss_pred HHHHHhccc
Confidence 999999653
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0016 Score=69.88 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc------hh----hhhhhhhcCcHHH
Q 038217 409 VAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD------KN----KSRIMDEEGCLGS 478 (715)
Q Consensus 409 ~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~------~n----k~~I~~~~g~i~~ 478 (715)
..++.+..++. -|+....+++.++++.|+.||.+.+.++....+..|.-|...+ ++ -..++ +.++++.
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv-dg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV-DGQVLAL 180 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH-hccHHHH
Confidence 45667777775 4899999999999999999999999999999999998886432 22 23455 7889999
Q ss_pred HHHHHhcC-----CCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcC-C-hhHHHHHHHHHHHhhcCCc-
Q 038217 479 IVKVLRFG-----LTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLG-T-PRGKKDAVTALFNLSTHTD- 549 (715)
Q Consensus 479 Lv~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~-~-~~~~~~A~~aL~nLs~~~~- 549 (715)
||.-+.+- .......++.+++.|+...+ +++..+++ .|.+..|+.-+... . ...+..|..+|.-+-.+..
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 99888652 12234567788888887655 47777777 68888888755443 2 4667888888888876554
Q ss_pred cHHHHHHhCChHHHHHhhC-----C------hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG-----H------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~-----~------~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
|+...-...+|..+++-+. | +++.++-...|+.+...++++...+...| +....-+++. ....+..|
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG-lqLm~Lmlr~-Kk~sr~Sa 337 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG-LQLMNLMLRE-KKVSRGSA 337 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc-HHHHHHHHHH-HHHhhhhH
Confidence 8888888899999998884 3 26778888888888788999999999888 5554445553 56678888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHhcCC
Q 038217 619 VAALLELCRSGG-ASATERVLKAPA 642 (715)
Q Consensus 619 ~~~L~~L~~~~~-~~~~~~l~~~~g 642 (715)
+++|-....+.+ ...+..+++..|
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHh
Confidence 999977776652 256667777455
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00045 Score=77.29 Aligned_cols=271 Identities=14% Similarity=0.054 Sum_probs=168.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHcC--ChHHH--HHhhccCCHHHHHHHHHHHhhhh-cCchh
Q 038217 397 QQLANGSPRAKTVAAREIRLLAKTGKENRA------FIAKAG--AIPHL--RNLLSTHNPVAQENSVTAMLNLS-IYDKN 465 (715)
Q Consensus 397 ~~L~s~~~~~~~~A~~~L~~La~~~~~~r~------~i~~~G--~i~~L--v~lL~s~d~~~~~~A~~aL~nLs-~~~~n 465 (715)
+.+++++...+..++.+|......+ .+.. .+.+.| .+-.. +.++..+......++....+.++ .-+.+
T Consensus 239 rL~k~~~~s~~l~sl~cl~~~~~~s-~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~skl 317 (678)
T KOG1293|consen 239 RLLKDPDFSERLRSLECLVPYLRKS-FNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKL 317 (678)
T ss_pred hhhhCCCccHHHHHHHHHHHHHhcc-ccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhh
Confidence 4455777777788888888877654 1111 112223 11111 11222222223333444445555 34455
Q ss_pred hhhhhhhcCcHHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCc-----hhHHHHhcccCcHHHHHHHhhcCChhHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGL-----TTEARENAAATLFSLSAVH-----EYKKKIADESGAVEALATLLRLGTPRGKK 535 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls~~~-----~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~ 535 (715)
..... +..+++.++++|..+. .++.+.-++.-...+.... .+++.+-. .-....+..+....+.....
T Consensus 318 q~~~~-e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~-~~t~~~l~~~~~~kd~~~~a 395 (678)
T KOG1293|consen 318 QLPQH-EEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILE-TTTESHLMCLPPIKDHDFVA 395 (678)
T ss_pred hhHHh-hhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHH-HHHHHHHccccccccHHHHH
Confidence 55555 6778888888886431 2333332222222222111 12333322 12222222222234556777
Q ss_pred HHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCC
Q 038217 536 DAVTALFNLSTHTD-NCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGT 611 (715)
Q Consensus 536 ~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s 611 (715)
.|+.++.+++..-. -+.-+-...+..+|++++.++ .+...++++|.|++. ...-+..+++.|| |..+..++.+..
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng-Id~l~s~~~~~~ 474 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG-IDILESMLTDPD 474 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc-HHHHHHHhcCCC
Confidence 77777777765322 222244557789999999755 778889999999987 5778999999999 999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 612 PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 612 ~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
+..+..++++|.++..+..+....+..+ --....|..+..+....+++.+-.+||.|--.
T Consensus 475 ~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986665555555 33467788888999999999999999988654
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.4e-05 Score=65.85 Aligned_cols=40 Identities=25% Similarity=0.728 Sum_probs=32.4
Q ss_pred cCccCcccccCc------------eeC-CCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 293 CCPIMLDLMRDP------------VII-STGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~lm~dP------------v~~-~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
.|+||++.+.+| +.. .|||.|...||.+|+.. +.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 399999999433 333 89999999999999988 66999996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=84.17 Aligned_cols=77 Identities=29% Similarity=0.474 Sum_probs=71.1
Q ss_pred cCCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
++.++|++|..|++..+|+|||++ .+|.+.+|+.|..++-. ..+.|..|.|++..+++||..+|..|..|....+.+
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~K 924 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQK 924 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccccc
Confidence 668999999999999999999999 68899999999999988 788999999999999999999999999998776654
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0058 Score=65.51 Aligned_cols=268 Identities=13% Similarity=0.077 Sum_probs=183.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCC----hHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA----IPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~----i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
.+.+..|..+++-....+.+.|..++.-+... .+.+. ...|-..+.+ .+.+...-|+.+|..+...++.|.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 35557777777777766777777776543221 11111 1223334444 677788888999999999999999
Q ss_pred hhhhhcCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVL-RFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs 545 (715)
.++ .+.++..++..+ .+--+..++....-+++-|+-++.....+.. .+.|+.|.+++++.. +.+..-.+.++.||.
T Consensus 193 ~~v-~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 193 AFV-IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred eee-ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 888999999988 3323678889999999999999998888844 899999999998754 567788889999998
Q ss_pred cCC-------ccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHH-------HHHhCCcc------------------
Q 038217 546 THT-------DNCVRMIEAGAVTALVGALG-----HEGVAEEAAGAL-------ALIVRQPI------------------ 588 (715)
Q Consensus 546 ~~~-------~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L-------~~La~~~e------------------ 588 (715)
... +....|+..++.+ -++.|. |+++.+..--+- ..|++.++
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLK-TLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 765 2345566666544 445552 554443322222 22332222
Q ss_pred ------hHHHHhhhC-CcHHHHHHHhhcCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 038217 589 ------GAAAVGEEE-MAVTGLVGMMRCGT-PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660 (715)
Q Consensus 589 ------~~~~i~~~g-~~I~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~ 660 (715)
+...+-+.+ ..+..|+.+|...+ |..--.|+.=+....+.-| +....+.+ .|+=..+++|+.+.+++++-
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k-~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVEK-YGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHHH-hchHHHHHHHhcCCCchHHH
Confidence 222222211 13577888888754 6666677777788887764 34445555 99999999999999999999
Q ss_pred HHHHHHHHH
Q 038217 661 KAASLARVF 669 (715)
Q Consensus 661 ~A~~lL~~l 669 (715)
.|-...+.+
T Consensus 428 ~ALlavQ~l 436 (442)
T KOG2759|consen 428 HALLAVQKL 436 (442)
T ss_pred HHHHHHHHH
Confidence 887655543
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.9e-05 Score=89.80 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=70.2
Q ss_pred cCCCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
...++|++|.-|+...+|.|||.++ +|++.||+-|.+++.. ..+.|.||.+|+...+.||..++..|..|..+...
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~~ 939 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKRN 939 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhhh
Confidence 3467999999999999999999996 9999999999999998 78899999999999999999999999999887653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0028 Score=75.35 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=155.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~~ 468 (715)
...+.+-.+|.|.+|..|..|+-.|..++.+..+.-.... ..+++..+..|.++++.+|..|+.++..++.+=.. -..
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 3556777788999999999999999999976544432211 25677778889999999999999999999876532 222
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHH-HHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVE-ALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~-~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
-. ..-.++.|+..+.+..+..++.+|+++|.+++..-.......=-.+.+. .|..+++++.+.+++.++++|...+..
T Consensus 427 ~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 23 4567789999998876889999999999999875442222111123444 222345567789999999999988764
Q ss_pred CccHHHHHHhCChHHHHHhhC---Chh---HHHHHHHHHHHHhCCcchHHHHhhhC-CcHHHHHHH---hhcCChHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG---HEG---VAEEAAGALALIVRQPIGAAAVGEEE-MAVTGLVGM---MRCGTPRGKEN 617 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~---~~~---~~~~al~~L~~La~~~e~~~~i~~~g-~~I~~Lv~l---L~~~s~~~ke~ 617 (715)
.+.+-.=.-.-.+|.|.+.|. +.+ ++-++...+..++ ..-|++.+.... -++..+..+ ....++..+++
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 433222112245677777774 233 3333333333332 234555554322 224444444 22245666888
Q ss_pred HHHHHHHHHhcCCHHH
Q 038217 618 AVAALLELCRSGGASA 633 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~ 633 (715)
-...-..+|+.-|++.
T Consensus 585 ~~~~warmc~ilg~~F 600 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDF 600 (1075)
T ss_pred HHHHHHHHHHHhchhh
Confidence 8888888888665543
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.1e-05 Score=84.96 Aligned_cols=68 Identities=26% Similarity=0.577 Sum_probs=57.2
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc-cHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP-NRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p-n~~l~~~i~~~ 354 (715)
..+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ...++..+..|
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 3477889999999999999995 99999999999999999 899999998887766555 45566666655
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0041 Score=69.89 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSI 479 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~L 479 (715)
..+.+....|+-.+..++..-...|.-+....++.+||++|..++..++..++++|+|+... .+.|..+. ..|+|+.+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHH
Confidence 34677778888888888876566677777788999999999889999999999999999764 56699999 99999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC-cHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHH
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG-AVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIE 556 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g-~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~ 556 (715)
.+++.+. +..+|.++.++|+++.-+.+...+..-... .-..++.+..+.+..+++.+...|+||.-+ .+....+++
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999998 999999999999999988775544332122 234566777778889999999999999654 334444443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.015 Score=69.50 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhc------Cc
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSI------YD 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~------~~ 463 (715)
.+..|+..|.+.+.+++.+|-+.+..+.+..+ ..+.|..++.+ .|++++.-|+-.+..|.. +.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~ 74 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSA 74 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCH
Confidence 46678888999999999999999988886532 78888888865 789999988888888743 33
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
+.|..|. ..|+..+.+.....+|..-+.++..++.+.-.. .+++.++.|++..+++++..++.|+.+|+.
T Consensus 75 e~~~sik------s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 75 EVQQSIK------SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSS 144 (1075)
T ss_pred HHHHHHH------HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 4455555 345555555547788999999999998754333 568899999999999999999999999999
Q ss_pred hhcCCccHHHHHHhCChHHHHHhh----CC--hhHHHHHHHHHHHHhCCc-chHHHHhhhCCcHHHHHHHhhc----CCh
Q 038217 544 LSTHTDNCVRMIEAGAVTALVGAL----GH--EGVAEEAAGALALIVRQP-IGAAAVGEEEMAVTGLVGMMRC----GTP 612 (715)
Q Consensus 544 Ls~~~~n~~~iv~aG~v~~Lv~lL----~~--~~~~~~al~~L~~La~~~-e~~~~i~~~g~~I~~Lv~lL~~----~s~ 612 (715)
+...-+|... +.++.+..++ .| ..++..|+.++...+... .++...-.....+|.++..+.. |+.
T Consensus 145 ~~~~~~~~~~----~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 145 LPETFGNTLQ----PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred hhhhhccccc----hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 9876554432 3455555555 33 258888888888876643 4555555555557777765554 555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHHh
Q 038217 613 RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQRC 672 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~~ 672 (715)
..-..+..+|-.|....+.-....+. .++.....+..+. .+.+|..|-..+--+.+.
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 55567777787777776443333332 2466667777665 778888888877777665
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.8e-05 Score=82.40 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=58.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC-----CCccHHHHHHHHHHHHh
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR-----LVPNRALRNLIVQWCTA 357 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~-----l~pn~~l~~~i~~~~~~ 357 (715)
..+..+|.|.||...+.+||+++|||+||..||.+-+.. ...||.|+.++.... ..+|+.+..+|..|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 456889999999999999999999999999999997664 788999998886422 33466777788877654
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0022 Score=66.00 Aligned_cols=189 Identities=19% Similarity=0.172 Sum_probs=135.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
..++.||.+.++.++..|+..|.+|+.. ..+.....+.-.++.+.++++.. .. .+.|+.+|.|+|.....+..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 4588999999999999999999999877 43444443456778888888765 33 67889999999999999999988
Q ss_pred ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHh------CChHHHHHhhCCh-----hHHHHHHHHHHHH
Q 038217 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEA------GAVTALVGALGHE-----GVAEEAAGALALI 583 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a------G~v~~Lv~lL~~~-----~~~~~al~~L~~L 583 (715)
. .+..++.++.+.........+.+|.||+..++....+... .++..++..+.+. .--....-++.||
T Consensus 82 -~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 82 -D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred -H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 3 8888888887665667778889999999988765554322 2333344443221 2235567788999
Q ss_pred hCCcchHHHHhhhCCcH-HHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 584 VRQPIGAAAVGEEEMAV-TGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 584 a~~~e~~~~i~~~g~~I-~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+..+.||.-+.....+. ..|+.+-..++.--|..-+++|.|.|...
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc
Confidence 99999999987766422 22222222245555777788999988774
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.019 Score=68.01 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..+.+.|...++.+|+.|+-++.++-..+++ .+.+.|.++.|..+|.+.|+.++.+|+.+|..+.......-.+
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l- 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES- 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-
Confidence 556677778889999999999999998876653 3456789999999999999999999999999997654333222
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC--
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-- 548 (715)
..+.+..++..|... ++=.+.....+|..... ...... ...+..+...|++.++.+.-.|+.++.++....
T Consensus 217 -~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P--~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 217 -SNEWVNRLVYHLPEC-NEWGQLYILELLAAQRP--SDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCC--CCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 355666677777654 44444444444433211 111111 235566666677777777777788777776532
Q ss_pred ccHHHHHHhCChHHHHHhhC-ChhHHHH------------------------------------HHHHHHHHhCCcchHH
Q 038217 549 DNCVRMIEAGAVTALVGALG-HEGVAEE------------------------------------AAGALALIVRQPIGAA 591 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~-~~~~~~~------------------------------------al~~L~~La~~~e~~~ 591 (715)
+....+. ....++|+.+++ +++++-- .+.+|..|+. +++..
T Consensus 290 ~~~~~~~-~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan-e~Nv~ 367 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT-PSVAP 367 (746)
T ss_pred HHHHHHH-HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC-cccHH
Confidence 1111110 112233444443 3344433 3444443331 22222
Q ss_pred HHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.| +.-|.+.+...+...+..++.++..++..-+. .. ..++..|+.++.++..-+.+....+-.++++
T Consensus 368 ~I------L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-~a------~~cV~~Ll~ll~~~~~~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 368 EI------LKELAEYASGVDMVFVVEVVRAIASLAIKVDS-VA------PDCANLLLQIVDRRPELLPQVVTAAKDIVRK 434 (746)
T ss_pred HH------HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-HH------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22 23333444455677778888888777765421 11 2346678888877655554444444444455
Q ss_pred h
Q 038217 672 C 672 (715)
Q Consensus 672 ~ 672 (715)
+
T Consensus 435 y 435 (746)
T PTZ00429 435 Y 435 (746)
T ss_pred C
Confidence 4
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.013 Score=63.96 Aligned_cols=248 Identities=15% Similarity=0.057 Sum_probs=176.3
Q ss_pred HHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC-CCHH
Q 038217 412 REIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG-LTTE 490 (715)
Q Consensus 412 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~-~~~e 490 (715)
..|-.+.+.++..|..+.-.-..+.+..++-+++.+++-.|..++..+..+.+.-..+. +.+.-..++.-|..+ ....
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~-~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILL-KLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCchhhHhhhcccCCChH
Confidence 34556667778777777766667777665555559999999999999999999888888 777777777777654 2456
Q ss_pred HHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh
Q 038217 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE 570 (715)
Q Consensus 491 ~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 570 (715)
.|+.|...++.+...+.....+ . .|.+..++.+....+++.+..|+.+|+.|+..+ -..++.+|++..|++.+.|+
T Consensus 84 ER~QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc
Confidence 7999999999887765444444 3 588999999998888899999999999998743 34566899999999999653
Q ss_pred --hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-------C---hHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 571 --GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-------T---PRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 571 --~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-------s---~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+.+..+.++..+-.+|..|.-+...-. +..+..-..+. + .+.+..+..+...|-+.+|= ..--.
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d-L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL--l~l~~ 236 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFD-LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL--LYLSM 236 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCcc-HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--eeeec
Confidence 6788888888888888999887766555 56665532221 1 23343344444444444331 11111
Q ss_pred hcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 639 KAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 639 ~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+-..+..|+..+...++.+++..-.++-
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11136888999999999988887665443
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0068 Score=68.07 Aligned_cols=276 Identities=14% Similarity=0.130 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC-----CHHHHHHHHHHHhhhhcC-chhhhhhhhhcC
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH-----NPVAQENSVTAMLNLSIY-DKNKSRIMDEEG 474 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g 474 (715)
..++++..+|+++|.|....++..|..+++.|+.+.++..|+.. +.++.-....+|+-++.. .+.+..++.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788899999999999999999999999999999999999875 788888899999888654 456777775778
Q ss_pred cHHHHHHHHhc--------C--------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcC---------
Q 038217 475 CLGSIVKVLRF--------G--------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG--------- 529 (715)
Q Consensus 475 ~i~~Lv~lL~~--------~--------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~--------- 529 (715)
++..|+..|.. . .+.+....++.++||+......... ....+.++.|+.++..-
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 88888887742 0 1345567888999999765443322 11245566666654321
Q ss_pred ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHH-HhCCcchHHHHhhhCCcHHHHHHHh
Q 038217 530 TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-HEGVAEEAAGALAL-IVRQPIGAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~-La~~~e~~~~i~~~g~~I~~Lv~lL 607 (715)
.......++.+|.|+-.. +...++....-..-+..-. +.......+.+|.. +....... . ... +.+++.+|
T Consensus 202 l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~---l-~~~-l~PlL~lL 274 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALK---L-DEL-LTPLLTLL 274 (446)
T ss_pred chhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCccc---c-hhh-HhhHHHHH
Confidence 135577788888887221 1111111000000000011 22333333444332 22211111 1 233 56666665
Q ss_pred hc---CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh-hccCCCC
Q 038217 608 RC---GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENAA-LHFGGLG 683 (715)
Q Consensus 608 ~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~~-~~~~~~~ 683 (715)
.. .+...|. .|...--....++...+-++..+-..|+.++.+..+..|..++.+|-.|.+..... ....|||
T Consensus 275 ~~~~~~~~~~Rk----~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG 350 (446)
T PF10165_consen 275 TRLARAAREVRK----YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYG 350 (446)
T ss_pred HHHHHhcHHHHH----HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCch
Confidence 54 2233332 23222223323444455555668999999999999999999999999988755432 3456766
Q ss_pred ccccc
Q 038217 684 VGYAF 688 (715)
Q Consensus 684 ~~~~~ 688 (715)
-++++
T Consensus 351 ~AaG~ 355 (446)
T PF10165_consen 351 NAAGF 355 (446)
T ss_pred hHHHH
Confidence 55555
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0038 Score=69.96 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH----cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK----AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
..++.|...|.+.+...+..|..+|.+++.++++.-..=+- .-.+|.++++.++.++.++.+|+.++...-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 47899999999999889999999999999877544332111 1358899999999999999999998876654432
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
+..+..-...++.+..+-... ++++|.+.+.+|..|-.....|-.--- .+.|+-++..-++.++.+.-.|+.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 233331234556666555444 999999999999998766544433222 467777777777777888899999999999
Q ss_pred cCCccHHHHHHh--CChHHHHHhhC--Chh--------------------------------------------------
Q 038217 546 THTDNCVRMIEA--GAVTALVGALG--HEG-------------------------------------------------- 571 (715)
Q Consensus 546 ~~~~n~~~iv~a--G~v~~Lv~lL~--~~~-------------------------------------------------- 571 (715)
..+-.+..+... ..||.|+.=+. +.+
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 888444433332 55666665542 110
Q ss_pred ------HHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHH----HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038217 572 ------VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG----MMRCGTPRGKENAVAALLELCRSGGASATERVLKAP 641 (715)
Q Consensus 572 ------~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~----lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 641 (715)
++.-++++|-.|+ -+..... ++.+.- .|.+..=..||.++-+|..++.+.- .-+....
T Consensus 365 ~~~dWNLRkCSAAaLDVLa-------nvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~~p~L 432 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLA-------NVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGFVPHL 432 (885)
T ss_pred ccccccHhhccHHHHHHHH-------HhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhcccch
Confidence 1111222222222 1222222 444444 4444455779999999999886642 2333322
Q ss_pred -CcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 642 -ALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 642 -g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.++|.|+.++.+..+-++...-|.|.-+..+
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 2689999999998888887777777666654
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00022 Score=51.66 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=38.0
Q ss_pred CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 586 QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 586 ~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
+++++..+++.|+ |+.|+.+|.++++..++.|+++|++||+
T Consensus 1 ~~~~~~~i~~~g~-i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGG-IPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTH-HHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccc-HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3678899999999 9999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.04 Score=65.36 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=166.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
+.+..|-..|.+.+...++.|++.|-.....+.+. ..+.+..++++.++|.+++.-..-.|.+++.....- .+
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-al 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-AL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-HH
Confidence 45667778888888888888888765555333222 235667788899999999998888888887644322 22
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
. ++..+.+=+++. ++-.|..|+.+|.++-.. .+. .-.++.+.+.+.+.++-+++.|+.++.++-....
T Consensus 105 L----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred H----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 2 467777777776 889999998888887442 111 1345677778888889999999999999865332
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
..+.+.|.++.|..+|. |+.++.+|+.+|..+.......-. ...+. +..|+..+...++..|-..+.+|..
T Consensus 173 --elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~-~~~Ll~~L~e~~EW~Qi~IL~lL~~--- 245 (746)
T PTZ00429 173 --QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEW-VNRLVYHLPECNEWGQLYILELLAA--- 245 (746)
T ss_pred --ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHH-HHHHHHHhhcCChHHHHHHHHHHHh---
Confidence 23346678889999886 669999999999999754322222 22344 6677777766777888766666633
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 628 ~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
..+....+. ..++..+...+++.++.+.-.|..++
T Consensus 246 y~P~~~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~i 280 (746)
T PTZ00429 246 QRPSDKESA----ETLLTRVLPRMSHQNPAVVMGAIKVV 280 (746)
T ss_pred cCCCCcHHH----HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 322111111 12366677777777776665555543
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.015 Score=60.21 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=170.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHH----HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcC
Q 038217 399 LANGSPRAKTVAAREIRLLAKTGKENRA----FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEG 474 (715)
Q Consensus 399 L~s~~~~~~~~A~~~L~~La~~~~~~r~----~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g 474 (715)
|..++..++.-++..+..+..+.+.|-. .++.+|..+.++......|.++...|...+..++..+..-+.|. ...
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF-eSe 169 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF-ESE 169 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc-ccc
Confidence 3334444445556666666655543321 34577899999999999999999999999999999998888887 666
Q ss_pred cHHHHH--HHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccH
Q 038217 475 CLGSIV--KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 475 ~i~~Lv--~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
....+- .+-... +.-+|......+..+++.......-+..+|.+..|..=|+. .+.-+..+++.....|......+
T Consensus 170 llDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR 248 (524)
T ss_pred cCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence 555443 233333 55677788888888877665444445558888888877764 45566778899999999888889
Q ss_pred HHHHHhCChHHHHHhhC----ChhHHHHHHHH----HHHHhCCcchHHHHhhh-CCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG----HEGVAEEAAGA----LALIVRQPIGAAAVGEE-EMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~----~~~~~~~al~~----L~~La~~~e~~~~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
..+.+.|.|..+..++. ++--.-.++.. +.+.+--.-.-+++++. -.+|....+++...++..++.|+.+|
T Consensus 249 eflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal 328 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL 328 (524)
T ss_pred hhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence 99999999999999984 44222333333 33332222222333321 11245556778888999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCC--cHHHHHHHhhcCCHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPA--LVGLLQALLFTGTKRARRK 661 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~s~~~~~k~~ 661 (715)
..+.++. +....+.+ .| ...+|+.-..+.+..++.-
T Consensus 329 GilGSnt--eGadlllk-Tgppaaehllarafdqnahakqe 366 (524)
T KOG4413|consen 329 GILGSNT--EGADLLLK-TGPPAAEHLLARAFDQNAHAKQE 366 (524)
T ss_pred HhccCCc--chhHHHhc-cCChHHHHHHHHHhcccccchHH
Confidence 9998774 34445555 55 4555555444445555443
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.036 Score=57.59 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHH--HHhhccCCHHHHHHHHHHHhhhh-cCchhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHL--RNLLSTHNPVAQENSVTAMLNLS-IYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~L--v~lL~s~d~~~~~~A~~aL~nLs-~~~~nk 466 (715)
+..+.++..+-..+.++-..|...|..++.. +..-..|.+......+ +.+--..+.-++...+..+..+. +++...
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 4566777777778888889999999999964 7777777777665443 33333334445556666666664 444545
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC--hhHHHHHH----HH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT--PRGKKDAV----TA 540 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~--~~~~~~A~----~a 540 (715)
...- ..|.+..|..-|+...+.-++.++......|+..+..+..+.+ .|.|..+..++...+ |-.+-.++ +.
T Consensus 207 neck-kSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 207 NECK-KSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hHhh-hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 5555 7899999988887754667888999999999998888888888 899999999986432 22222232 33
Q ss_pred HHHhhcCCccHHHHHHh--CChHHHHHhh--CChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc----CCh
Q 038217 541 LFNLSTHTDNCVRMIEA--GAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC----GTP 612 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a--G~v~~Lv~lL--~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~----~s~ 612 (715)
+.++...+-.-..++++ -+|.....++ +|+.+++.|+.+|..|-++.+|+..+...|. |..-.++.+ ...
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp--paaehllarafdqnah 362 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP--PAAEHLLARAFDQNAH 362 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC--hHHHHHHHHHhccccc
Confidence 44444333222333333 2244445554 3889999999999999999999999988876 333333322 334
Q ss_pred HHHHHHHHHHHHHHhcC---CHH--------HHHHH-----Hhc--CCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 613 RGKENAVAALLELCRSG---GAS--------ATERV-----LKA--PALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~---~~~--------~~~~l-----~~~--~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.-++.++.+|.+++..- ++. ....+ .+. ..-......+++...+...-.|-..+..+.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 45777778887777532 111 11111 110 112445566777777777766655555544
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00029 Score=58.80 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=36.3
Q ss_pred CCcCccCcccccC-ceeC-CCccHhhHHHHHHHHHh--CCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRD-PVII-STGQTYDRRSIARWMEE--GHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~d-Pv~~-~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~ 337 (715)
+-.||.|...-.+ |++. .|+|.|...||.+|+.. .+.+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3456666655445 6655 89999999999999996 3679999998764
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00072 Score=48.52 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=36.9
Q ss_pred hhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 422 ~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
++++..+.+.|+++.|+++|.+++.+++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588899999999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00016 Score=73.46 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=45.0
Q ss_pred cCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 293 CCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.|+||+.-+.-||.+.|+|.||.-||+.-...+..+||+|+++++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 699999999999999999999999999999988899999999997754
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00026 Score=70.98 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=42.1
Q ss_pred CCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
..+-.||+|++....|.++ +|||.||..||..-+.. -.++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3467999999999999988 69999999999988764 3689999997654
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00018 Score=82.73 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=42.8
Q ss_pred CCCCcCccCcccccC-----ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRD-----PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-----Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|+.. ..+||.|+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 447799999999999 778899999999999999998 889999998443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0066 Score=65.40 Aligned_cols=171 Identities=19% Similarity=0.154 Sum_probs=135.0
Q ss_pred hHHHHHHcCChHHHHHhhccCCHHH--HHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 038217 424 NRAFIAKAGAIPHLRNLLSTHNPVA--QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS 501 (715)
Q Consensus 424 ~r~~i~~~G~i~~Lv~lL~s~d~~~--~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 501 (715)
....|...|++..|++++.+++.++ +..|...|-.+. ..+|+..++ ..| +..|+.+-+.....+.....+++|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va-~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVA-RIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHh-hcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 4556777899999999999987655 677777665553 456778887 655 55555555554478999999999999
Q ss_pred hccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC--CccHHHHHHhCChHHHHHhhC--ChhHHHHH
Q 038217 502 LSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH--TDNCVRMIEAGAVTALVGALG--HEGVAEEA 576 (715)
Q Consensus 502 Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~a 576 (715)
+-.+.+ .+..+++ .|++..++-..+..++....+++-+|.|...+ ...+.+|++..+-.-|..+-. |+-++-+|
T Consensus 249 mFKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 987655 6777777 89999999888888899999999999998865 457889999988888777653 66778888
Q ss_pred HHHHHHHhCCcchHHHHhhhCC
Q 038217 577 AGALALIVRQPIGAAAVGEEEM 598 (715)
Q Consensus 577 l~~L~~La~~~e~~~~i~~~g~ 598 (715)
+-+.+.|+.+.+--..+.+.|.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccc
Confidence 8889999988887777777776
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.096 Score=56.62 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=167.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-----h----hhHHHHHHcCChHHHHHhhccC------CHHHHHHHHH
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTG-----K----ENRAFIAKAGAIPHLRNLLSTH------NPVAQENSVT 454 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-----~----~~r~~i~~~G~i~~Lv~lL~s~------d~~~~~~A~~ 454 (715)
.+|+.|+..|...+.+.-...+.-++.+...+ . ..-..+++.++++.|++-+..= ...-..+++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 36789999999999999888888888888443 2 2344566778899999877642 2345677788
Q ss_pred HHhhhhcCch-hhhhhhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhh----
Q 038217 455 AMLNLSIYDK-NKSRIMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLR---- 527 (715)
Q Consensus 455 aL~nLs~~~~-nk~~I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~---- 527 (715)
.+-|+..... -...++ +.|.+.-|+.-+.. +.-..-+..|..+|.-+-.+.+ ++...+. ..+|..|++-+.
T Consensus 205 vveNlv~~r~~~~~~~~-e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIV-EQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHhccHHHHHHHH-HhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhc
Confidence 8888877654 467777 67777766664433 2123346778888877765554 8888888 888988887663
Q ss_pred cC-----ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC-hhHHHHHHHHHHHHhCCcc---hHHHHhhhCC
Q 038217 528 LG-----TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH-EGVAEEAAGALALIVRQPI---GAAAVGEEEM 598 (715)
Q Consensus 528 ~~-----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~-~~~~~~al~~L~~La~~~e---~~~~i~~~g~ 598 (715)
.+ ..+..++-..+|+.+...+.|+.+++...++....-+++. ......++.+|-.....++ ++..+++..|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 11 1355677888888888999999999999888877766763 3556778899987766655 5556677777
Q ss_pred cHHHHHH-HhhcC---------ChHHHHHHHHHHHHHHhcC
Q 038217 599 AVTGLVG-MMRCG---------TPRGKENAVAALLELCRSG 629 (715)
Q Consensus 599 ~I~~Lv~-lL~~~---------s~~~ke~A~~~L~~L~~~~ 629 (715)
+..+.. .++.. ....-|+-+.+|+++-.+.
T Consensus 363 -LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 363 -LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred -HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 777776 44322 2344678888888887654
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0002 Score=67.96 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.|.|-||.+.++.||...|||.||..|..+-++. ...|-.|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 4899999999999999999999999999988887 678999987553
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=54.57 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 392 AELLIQQL-ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 392 i~~Lv~~L-~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
|+.|++.| ++.++..+..|+..|..+- ...++|.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 7889999999988887332 1145999999999999999999999999872
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
...+++.|.+++.++.+..+|..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 4568899999998874666788888776
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=53.65 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=69.0
Q ss_pred hHHHHHhh-ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 434 IPHLRNLL-STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 434 i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
||.|++.| +++++.++..|+.+|.++ . ...+++.|+.+++++ +..+|..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~-~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i---------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------G-DPEAIPALIELLKDE-DPMVRRAAARALGRI---------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------T-HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------C-CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHh----------
Confidence 68899988 889999999999999843 2 446789999999887 999999999999877
Q ss_pred hcccCcHHHHHHHhhcCCh-hHHHHHHHHH
Q 038217 513 ADESGAVEALATLLRLGTP-RGKKDAVTAL 541 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL 541 (715)
+. ..+++.|.+++.+++. ..+..|+.+|
T Consensus 59 ~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 GD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 23 6689999999987654 4477787776
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.068 Score=60.90 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
-+...+.|+++|..+++.++..|+..|.-|++.||.|...+ -|.+.++|.+ .+-=+...-+....+|+-.+..
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR- 252 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR- 252 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch-
Confidence 34577888999998899999999999999998888876544 3677777754 3333445556667777665542
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH--HhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLF--SLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~--~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
+ ..-.+++|..++.+..-+.+...+..++- +++... ++-..| .-++..|-.++.+.++..+=.++.++..
T Consensus 253 --L--gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 253 --L--GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred --h--hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 2 24467888888887533444444554443 333322 333333 2367777777877888888888888887
Q ss_pred hhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHH-hhcCChHHHHHHHH
Q 038217 544 LSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGM-MRCGTPRGKENAVA 620 (715)
Q Consensus 544 Ls~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~l-L~~~s~~~ke~A~~ 620 (715)
+... +..+|.+ .-..+++.|. |+.++-.|+..|..+.+ .++-.+|+ ..|+.. ........|..-+.
T Consensus 326 I~kt---Hp~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIV------k~LM~~~~~ae~t~yrdell~ 394 (877)
T KOG1059|consen 326 ILKT---HPKAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIV------KTLMKHVEKAEGTNYRDELLT 394 (877)
T ss_pred Hhhh---CHHHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHH------HHHHHHHHhccchhHHHHHHH
Confidence 7652 2233333 2445677885 67999999999998864 45555554 355553 33322355666666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQ 670 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~ 670 (715)
-+..+|+.+.-.....+-. .+..|++|.. .|+.++..-|..++.+.-
T Consensus 395 ~II~iCS~snY~~ItdFEW---YlsVlveLa~l~~~~~G~~I~eQi~Dv~i 442 (877)
T KOG1059|consen 395 RIISICSQSNYQYITDFEW---YLSVLVELARLEGTRHGSLIAEQIIDVAI 442 (877)
T ss_pred HHHHHhhhhhhhhhhhHHH---HHHHHHHHHhccccchhhHHHHHHHHHhe
Confidence 6678888763333333322 3677777776 457777777777666543
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=54.60 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=99.1
Q ss_pred HHhcccCcHHHHHHHhhcCCh------hHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC----ChhHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGTP------RGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG----HEGVAEEAAGAL 580 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L 580 (715)
...+ .||+..|++++.++.. .....++.++..|-.+.-.-...++...|..++..+. |..+...|+++|
T Consensus 6 EFI~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFIS-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHh-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3444 6899999999998773 6677888898888776654555666677888888884 678999999999
Q ss_pred HHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 581 ALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 581 ~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+++.++...-..+....-++.|+..|+.+++..+.+|++.+-.|....++.-++.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999877765554444544999999999999999999999998888777665444443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=60.05 Aligned_cols=182 Identities=17% Similarity=0.134 Sum_probs=114.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 398 QLANGSPRAKTVAAREIRLLAKTG--KENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 398 ~L~s~~~~~~~~A~~~L~~La~~~--~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
.-.+.+|+.+.+|+..|+.+...+ ......+.+. ..+..++..+.+....+...|+.++..|+..-.+.-.-. ..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 345789999999999999999887 3444444432 566778888887778899999999999987654432222 35
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cHH
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCV 552 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~~ 552 (715)
..++.|++.+.++ ..-.++.|..+|..+...-.+...+ .++.+...+.+.++..+..++..|..+..... +..
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 6788899998887 7889999999999987754422222 14566667777889999999999988865433 111
Q ss_pred HHHH----hCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 553 RMIE----AGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 553 ~iv~----aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
.+-. ..+++.+...+. +++++..|-.++..+..+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 235677777776 568999999999888553
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.056 Score=59.79 Aligned_cols=219 Identities=16% Similarity=0.025 Sum_probs=116.9
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
..++.|+..|. ..+.+....++..+. ..+++ .++..|+..|.+.+..++..++.+|..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGW---------- 112 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhc----------
Confidence 35667777774 444555444333321 11111 126677777777777777777777653
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
|. ..++.+.|+.+|++. +..++..++.++.. .. ....+.|..+|++.++.++..|+.+|..|-.
T Consensus 113 i~-~~~a~~~L~~~L~~~-~p~vR~aal~al~~----------r~--~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 113 LG-GRQAEPWLEPLLAAS-EPPGRAIGLAALGA----------HR--HDPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred CC-chHHHHHHHHHhcCC-ChHHHHHHHHHHHh----------hc--cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 22 455666677777665 66666655555444 11 2345567777766667777777777665432
Q ss_pred ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhh----hCC-----------------cHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGE----EEM-----------------AVTGLVG 605 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~----~g~-----------------~I~~Lv~ 605 (715)
..+++.|...+. ++.++..|+..|..+-. ++....+.. .|. .++.|..
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 234444555554 45666666666655522 222222111 111 1333333
Q ss_pred HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 606 MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 606 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++. +..++.++.+|..+- . ...++.|+..+.+. ..++.|...++.+..
T Consensus 248 ll~d--~~vr~~a~~AlG~lg------------~-p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 248 LLQA--AATRREALRAVGLVG------------D-VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred HhcC--hhhHHHHHHHHHHcC------------C-cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 3332 223444433333211 1 33577777777544 488899888888765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00032 Score=71.17 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIV 352 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~ 352 (715)
.|.|-||.+.+.+||...|||+||..|-.+.++. ...|++|++.... .+.+...|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g-~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG-SFNVAKELLVSLK 300 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc-ccchHHHHHHHHH
Confidence 4799999999999999999999999999999887 6789999986643 3444444444333
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=55.20 Aligned_cols=92 Identities=13% Similarity=0.264 Sum_probs=76.2
Q ss_pred ccchhhHHHHHHHHHHhHHhHHHHHhcCCCCChhHHHhHHHHHHHHHHHHHHHHhccccchhHHHHhhhHHHHHHHHHHH
Q 038217 53 FFQRRNSRSLIRKMEAFLVLLEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQSSKLWLLLQNHSISGHFHDLNQ 132 (715)
Q Consensus 53 ~~~kk~~~~l~r~i~ll~~lleel~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~C~~~Sklyll~~~~~i~~~f~~~~~ 132 (715)
..+|..+.+|..-+..|.|+++||...+..++.+-..-++.|...|++++.|++.|++.+ -|=++....+..+.+++..
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~ 108 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE 108 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence 455777888889999999999999987765555557789999999999999999999885 4566688889999999999
Q ss_pred HHHHHhcc-CCCCc
Q 038217 133 EISTLLDV-FPADD 145 (715)
Q Consensus 133 ~l~~~L~~-lp~~~ 145 (715)
+|.+.++. +|+..
T Consensus 109 ~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 109 SLRRFIQVDLQLHQ 122 (147)
T ss_pred HHHHHhcchhHHHH
Confidence 99999885 45433
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.039 Score=62.11 Aligned_cols=270 Identities=16% Similarity=0.154 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHH-HHHHH----hhhhcC---
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN-SVTAM----LNLSIY--- 462 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~-A~~aL----~nLs~~--- 462 (715)
..+.+.+.+.+.....+..+.+.+..+.+++ .-..+.+.+++..|-............. +.-+. .+|...
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EP 212 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEP 212 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence 4566667777777778888888888877543 3445556677777777766543322221 11111 111110
Q ss_pred -----------------chhhhh-------hh--hhcCcHH----HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 463 -----------------DKNKSR-------IM--DEEGCLG----SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 463 -----------------~~nk~~-------I~--~~~g~i~----~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
+..|.. |+ -...+++ .++.-+... .+..+..++..|..++......-..
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHH
Confidence 011111 00 0122222 222222222 4566777777777777666655556
Q ss_pred hcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChh-HHHHHHHHHHHHhCCcchHH
Q 038217 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEG-VAEEAAGALALIVRQPIGAA 591 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~-~~~~al~~L~~La~~~e~~~ 591 (715)
.. +..||.|.+.|.+..+..++.+..+|.+++.--+|... .-.+|.|+..+.|+. -..+++..|..-.- .
T Consensus 292 ~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF-----V 362 (569)
T KOG1242|consen 292 CL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPECLDSLGATTF-----V 362 (569)
T ss_pred HH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHHHHHhhcceee-----e
Confidence 55 78999999999988899999999999999987776651 135888999998874 55566555543211 1
Q ss_pred HHhhhCCcHHHHHHHhhc----CChHHHHHHHHHHHHHHhcCC-HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRC----GTPRGKENAVAALLELCRSGG-ASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL 666 (715)
+-++... +..++.+|++ .+...++.++.+.+|+|..-+ +....... ..++|.|...+.+..|.+|.-|+..|
T Consensus 363 ~~V~~ps-LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 363 AEVDAPS-LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred eeecchh-HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 1233355 6666666665 366778999999999998752 22222222 23578888888888899998888777
Q ss_pred -HHHHHhhhh
Q 038217 667 -RVFQRCENA 675 (715)
Q Consensus 667 -~~l~~~~~~ 675 (715)
.++++..+.
T Consensus 440 ~~l~e~~g~~ 449 (569)
T KOG1242|consen 440 GALLERLGEV 449 (569)
T ss_pred HHHHHHHHhh
Confidence 555544433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=59.54 Aligned_cols=185 Identities=17% Similarity=0.115 Sum_probs=115.2
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---hhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCCh
Q 038217 485 FGLTTEARENAAATLFSLSAVH---EYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAV 560 (715)
Q Consensus 485 ~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v 560 (715)
++.+.+.|..|+..|..+.... ++...+.. -...+..+...+.+....+.+.|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3348999999999999887655 33333332 1244556666676666778899999999998654433222233578
Q ss_pred HHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC---HHHHH
Q 038217 561 TALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG---ASATE 635 (715)
Q Consensus 561 ~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~---~~~~~ 635 (715)
|.|+..+++ .-+.+.|..+|..++..-.....+. ++.+...+.+.++..|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 899999874 4788889999999876433111111 3555556777899999999999988876654 11111
Q ss_pred HHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 636 RVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 636 ~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
...- ..+++.+...+.++++.+|..|..++..|....+.
T Consensus 172 ~~~~-~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFL-KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1101 23688899999999999999999999998876654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0007 Score=73.22 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh----CCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~~ 339 (715)
-..+..|.+|.+.-.||+..+|.|+|||.||.+|... .+-+||.|..+++..
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456789999999999999999999999999998874 357999999888665
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00065 Score=71.84 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=39.4
Q ss_pred CcCccCcccccC--ce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRD--PV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~d--Pv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.|.||+|-+.+ -+ +++|+|.|...||..|+..-...||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 699999999874 33 569999999999999999865679999986543
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0007 Score=70.40 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=40.1
Q ss_pred CCCCcCccCcccccC-------------ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 289 PKDFCCPIMLDLMRD-------------PVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d-------------Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
.++..|.||++-|.. |--++|||.+.-+|+..|+.. ..+||.|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 447899999987543 367899999999999999998 88999999885
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.048 Score=60.45 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHH-HHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI-AKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...-|..+|+..+.+++..+-..|..+..+ ..+.... --...++.++.-+.++++.+|..|++.+.....-..+.-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 455677888888888875555444444432 1222222 22357889999999999999999999888775544433333
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHH---HHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAA---TLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~---~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
. -.|.+..+...+.....+..++.|.. .|..+.+....+..|-- ...|..|.+.+.++..+++..++.-+..|-.
T Consensus 288 ~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 288 Y-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred h-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 3 57777888877766423334443332 34444444434433322 4578888899988889999999999988887
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
...|....-....++.|+.-|+ ++.++..++.+|+++|..+....- -. ++..|+++......-.+..+.-++..
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~-fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RK-FLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HH-HHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 7777766666788999999997 458999999999999987655411 11 25566666665566667788888888
Q ss_pred HHhcC
Q 038217 625 LCRSG 629 (715)
Q Consensus 625 L~~~~ 629 (715)
||..-
T Consensus 442 lC~lL 446 (675)
T KOG0212|consen 442 LCLLL 446 (675)
T ss_pred HHHHh
Confidence 88754
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.09 Score=54.57 Aligned_cols=228 Identities=11% Similarity=0.110 Sum_probs=156.9
Q ss_pred hhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhc--CCCHHHHHHHHHHHHHhccCchhHHHHhcccC
Q 038217 440 LLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRF--GLTTEARENAAATLFSLSAVHEYKKKIADESG 517 (715)
Q Consensus 440 lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~--~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g 517 (715)
++..=++-++.-|+.+|.+|....+.|..+-.+.-.-..++.++++ | ..+.+.+.+-+++-|+-+......|-....
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg-~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG-VKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333455678889999999999988877665355667788888876 4 578899999999999998887766655457
Q ss_pred cHHHHHHHhhcCC-hhHHHHHHHHHHHhhc-CC-ccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHHHHH------
Q 038217 518 AVEALATLLRLGT-PRGKKDAVTALFNLST-HT-DNCVRMIEAGAVTALVGALG-----HEGVAEEAAGALALI------ 583 (715)
Q Consensus 518 ~I~~Lv~LL~~~~-~~~~~~A~~aL~nLs~-~~-~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~~L------ 583 (715)
.|..|+.+++... +.+...++..+.|++. .+ +....+.-.|-+.+-++.|. |++++..--.+=..|
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 8888888887643 4667788889999987 22 35555666676666677763 444432211111111
Q ss_pred -hC------------------------CcchHHHHhhhC-CcHHHHHHHhhcCChH-HHHHHHHHHHHHHhcCCHHHHHH
Q 038217 584 -VR------------------------QPIGAAAVGEEE-MAVTGLVGMMRCGTPR-GKENAVAALLELCRSGGASATER 636 (715)
Q Consensus 584 -a~------------------------~~e~~~~i~~~g-~~I~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~~ 636 (715)
+. ..++...+.+.+ ..+..|.++++...+. .--.|+.=+.++.+..| +....
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHH
Confidence 10 023334443333 2356777788876555 34566677778877764 55666
Q ss_pred HHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 637 VLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 637 l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+.+ .|+=..+++|+.+.++++|--|...++.+-
T Consensus 395 l~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSK-YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 666 999999999999999999999988877654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=55.98 Aligned_cols=57 Identities=23% Similarity=0.110 Sum_probs=34.9
Q ss_pred ChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 559 AVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 559 ~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
+++.|..+++++.++..++.+|..+- .... ++.|+..+. .+..+..|-.++..+..-
T Consensus 241 a~~~L~~ll~d~~vr~~a~~AlG~lg----------~p~a-v~~L~~~l~--d~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 241 AQAWLRELLQAAATRREALRAVGLVG----------DVEA-APWCLEAMR--EPPWARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHcC----------Ccch-HHHHHHHhc--CcHHHHHHHHHHHHhhCC
Confidence 45556666665556666666655542 1223 777777775 344777888887777653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.27 Score=58.16 Aligned_cols=203 Identities=20% Similarity=0.252 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK 481 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~ 481 (715)
+.+..+.-|+..+..+. .+.+.-..+++.|.+..|+.+|.+ -+..++.++.+|+.|+.+.+--..-+ +.|++.-|.+
T Consensus 1784 ~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~-~hg~l~yil~ 1860 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL-EHGGLMYILS 1860 (2235)
T ss_pred CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH-hcCchhhhhH
Confidence 45667777888776666 356677778888988888988865 57788889999999988877644444 5788777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCc-------------------------------------------------------
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVH------------------------------------------------------- 506 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~------------------------------------------------------- 506 (715)
++-...+...|..|+..|..|..+.
T Consensus 1861 ~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~ 1940 (2235)
T KOG1789|consen 1861 ILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGI 1940 (2235)
T ss_pred HHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHH
Confidence 7755435555666666665554322
Q ss_pred --------------------------------------------------------------------------------
Q 038217 507 -------------------------------------------------------------------------------- 506 (715)
Q Consensus 507 -------------------------------------------------------------------------------- 506 (715)
T Consensus 1941 i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1941 IDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred HHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc
Confidence
Q ss_pred -----------------hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-
Q 038217 507 -----------------EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG- 568 (715)
Q Consensus 507 -----------------~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~- 568 (715)
.....++. .|.+|.++.-+.-.+...-+.|+..|..|+.+.-.+..|....++..++..|+
T Consensus 2021 ~l~lLt~A~V~L~r~hP~LADqip~-LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK 2099 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPS-LGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK 2099 (2235)
T ss_pred hhHHHHHHHHHHHHhCcchhhhCCC-ccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh
Confidence 11111111 23333333333333333446788899999998888889998888888998885
Q ss_pred ChhHHHHHHHHHHHHhC--CcchHHHHhhhCCcHHHHHHHhhc
Q 038217 569 HEGVAEEAAGALALIVR--QPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 569 ~~~~~~~al~~L~~La~--~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
..+..-.|+.+|..+.. ..+--.+.++.|- |+.|+++|..
T Consensus 2100 ~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL-vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2100 QPSLMGLAAEALKRLMKRNTGELVAQMLKCGL-VPYLLQLLDS 2141 (2235)
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHhccCc-HHHHHHHhcc
Confidence 55777788888887754 2334455667777 9999999985
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0011 Score=67.30 Aligned_cols=47 Identities=13% Similarity=0.404 Sum_probs=39.1
Q ss_pred CcCccCccccc--Cce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 292 FCCPIMLDLMR--DPV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~--dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-|.||++-+. |-+ .++|.|.|.+.|+.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998774 444 459999999999999999767899999987754
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.39 Score=53.64 Aligned_cols=263 Identities=17% Similarity=0.132 Sum_probs=139.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh--
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR-- 468 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~-- 468 (715)
..++|-..|++--.-++.++++.+..++.+|- -..+. .-.|..|-.+|+++....+-.|+.+|..|+.....+..
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 45666666766667788999999988886651 11122 13567788889999999999999999999865443222
Q ss_pred ------hhhh---cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhcccCcHHHHHHHhhcCChhHHHHH
Q 038217 469 ------IMDE---EGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537 (715)
Q Consensus 469 ------I~~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A 537 (715)
++.+ .-...++..+|+.| +.+....-...+-+.-. .+..|..+. .++..|.-+. ++-+..-
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~i---da~rsLsl~F----p~k~~s~ 413 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAI---DALRSLSLLF----PSKKLSY 413 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeH---HHHHHHHhhC----cHHHHHH
Confidence 2211 12345566677777 65555544444444322 112222221 1233222221 1222222
Q ss_pred HHHHHHhhcCCc---cHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhCCcch-HH--HHh----hh-------CCc
Q 038217 538 VTALFNLSTHTD---NCVRMIEAGAVTALVGALG-HEGVAEEAAGALALIVRQPIG-AA--AVG----EE-------EMA 599 (715)
Q Consensus 538 ~~aL~nLs~~~~---n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~~~e~-~~--~i~----~~-------g~~ 599 (715)
+..|.+.-.+.+ .+..| |.++..+++ +++.++.|+..|+..-.+-+. +. .|+ +. |-.
T Consensus 414 l~FL~~~L~~eGg~eFK~~~-----Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~y 488 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYM-----VDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKY 488 (898)
T ss_pred HHHHHHHHHhcccchHHHHH-----HHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchH
Confidence 222222211110 11111 333444443 445555555544443222111 11 110 11 112
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
|..+..-+--.+.-+|..|+.+|..++.+-.+... . ..+...|-..+.+.++.++..|+-+|+.|+..+.
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~-~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----P-QSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----H-HHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence 33333311113567788999999777766533221 1 2345567778888899999999999999996543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.3 Score=54.48 Aligned_cols=270 Identities=15% Similarity=0.118 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA-KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.|+.|-+.+..-++..|.-.+.=|..+-.. |+. ..+. -....+-|..+|+....+++..+-++|.+.-..-.++..
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3555555555555777777666666655432 222 1111 123456677788889999998888888776544344444
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHH---HHHHh
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDAVT---ALFNL 544 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~---aL~nL 544 (715)
-+.-...++.++.-+.+. .++.+..|..-|..............- +|.+..++.++.+..+ ..+..|.. .|..+
T Consensus 245 s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhh-hhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 432456788888888887 889998888888777654443333333 6777777777765433 23333322 24444
Q ss_pred hcCCccHHHHHHh-CChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEA-GAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~a-G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
++....+.. ++. ..+..|.+.+++ .+.+..++..+..|-....|.-..-...- .+.|+.-|.+.|+.+-..++.+
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i-f~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI-FLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH-HHHHHHhhcCchhHHHHHHHHH
Confidence 444433333 332 346777777763 37778888888888554445554445555 7889998888999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.++|...... ...+ ++..|+++....+.-....+.-++|.|..
T Consensus 401 la~i~~s~~~~---~~~~---fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 401 LASICSSSNSP---NLRK---FLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHhcCcccc---cHHH---HHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999875321 1111 25557777777666666666666666654
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.44 Score=55.25 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=93.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhcCCc---cHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFNLSTHTD---NCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
.++++|..++++........|..++.+.+ |....+=..+|..++.+..+.+++..|+.+|...-.++++-..-+.-+
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 45666777788888888888888887554 666666566788888777788999999999988766544322111111
Q ss_pred C----------cH----HHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 038217 598 M----------AV----TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663 (715)
Q Consensus 598 ~----------~I----~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~ 663 (715)
+ ++ ..+++.|++.+..+|..|+..++.|...+ .++ .+ +..|+.++.+..+..|.-.+
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-~m------v~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-VM------VKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-HH------HHHHHHHHHhccHHHHHHHH
Confidence 1 01 35677777778888899988888887653 333 22 23377777777776664433
Q ss_pred -HHHHHHHH
Q 038217 664 -SLARVFQR 671 (715)
Q Consensus 664 -~lL~~l~~ 671 (715)
.+..+..+
T Consensus 407 s~I~~laEk 415 (866)
T KOG1062|consen 407 SKIAELAEK 415 (866)
T ss_pred HHHHHHHHh
Confidence 34444433
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.23 Score=53.58 Aligned_cols=162 Identities=24% Similarity=0.248 Sum_probs=102.6
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
-.++.++.+|.+.+..++..|...+..+ - ..-+++.+..+|... +..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~-~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------G-SEEAVPLLRELLSDE-DPRVRDAAADALGEL--------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------c-hHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence 4678888888888888888888773332 2 556788888888887 778888777744433
Q ss_pred HhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHH-HHhCC---
Q 038217 512 IADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALA-LIVRQ--- 586 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~-~La~~--- 586 (715)
+. ..+++.|+.++.. .+..++..|+.+|..+-.. .++..++..+.+..... +...+. .+...
T Consensus 102 -~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~ 168 (335)
T COG1413 102 -GD-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS-AAAALDAALLDVRAA 168 (335)
T ss_pred -CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh-hhhhccchHHHHHHH
Confidence 22 5688888888884 6778888888888766432 23667777776432111 111110 00000
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
......+..... ++.+.+++......++..|..+|..+...
T Consensus 169 a~~~l~~~~~~~~-~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 169 AAEALGELGDPEA-IPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHcCChhh-hHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 001111112223 67788888877778888888888777765
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0077 Score=43.05 Aligned_cols=40 Identities=38% Similarity=0.444 Sum_probs=35.4
Q ss_pred chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
++++..+.+ .|+++.|++++.+++++.++.|+++|+||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 346777878 9999999999998889999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.15 Score=57.81 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK-AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
...++.++...++.++..|..|+.++..+.-. .+...+.. ..+++.|..+-...+++++.+.+.+|..|......|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 45788999999999999999999998776643 23333333 2567777777778899999999999999877665433
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcc-cCcHHHHHHHh----------hc-CC-----
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADE-SGAVEALATLL----------RL-GT----- 530 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-~g~I~~Lv~LL----------~~-~~----- 530 (715)
.=. -.++++-++..-+.. +.++-..|+.....++..+..+..++.. ...||.|+.-+ ++ +.
T Consensus 251 ~ph-l~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 251 VPH-LDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred ccc-hHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 222 356777777777666 8888899999999999888555555431 25677766532 20 00
Q ss_pred -------h---------------------------------hHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--
Q 038217 531 -------P---------------------------------RGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-- 568 (715)
Q Consensus 531 -------~---------------------------------~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-- 568 (715)
| ..++.++.+|--|+ .+.....++.++.+|+
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence 0 12233333322222 2223344555666553
Q ss_pred --Ch--hHHHHHHHHHHHHhCCcchHH-HHhhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038217 569 --HE--GVAEEAAGALALIVRQPIGAA-AVGEE-EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA 642 (715)
Q Consensus 569 --~~--~~~~~al~~L~~La~~~e~~~-~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g 642 (715)
.+ .+++.++-+|..+| ||.. -+..+ +..||.|+.+|.+..+-+|.-.+++|...+..--.+-...... .
T Consensus 402 L~~~~W~vrEagvLAlGAIA---EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p 476 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIA---EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P 476 (885)
T ss_pred cCcchhhhhhhhHHHHHHHH---HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence 33 56777777777776 3332 22221 2357888899998999999998888866554321111111111 1
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 643 LVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 643 ~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++..|+.-+-+++.++++.|-+..-.+.+
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 34556666678899999999888777765
|
|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0019 Score=69.21 Aligned_cols=49 Identities=16% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCCCCCCcCccCcccccCce----eCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPV----IISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv----~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
..+-+-.+||+|++-|.+-| ++.|.|+|-..|+.+|+. .+||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 34555669999999998877 348999999999999984 58999987654
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.089 Score=49.87 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=99.5
Q ss_pred HHHHHcCChHHHHHhhccCC------HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCC-CHHHHHHHHHH
Q 038217 426 AFIAKAGAIPHLRNLLSTHN------PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL-TTEARENAAAT 498 (715)
Q Consensus 426 ~~i~~~G~i~~Lv~lL~s~d------~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~ 498 (715)
..+...||+..|++++.++. .++..++++++..|-.+.----... ....|..++..+.... +..+.+.|+++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence 35677899999999998765 4788899999999988765445566 7788999999997653 57889999999
Q ss_pred HHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 499 LFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 499 L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
|.++..+.......+...=-++.|+..|+..+++.+.+|+..+-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999888867766656789999999999889999999988887765
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0022 Score=67.86 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~ 324 (715)
++++.||||...+++|++++|||..|+.|-..-+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 579999999999999999999999999999866554
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.86 Score=49.12 Aligned_cols=184 Identities=24% Similarity=0.265 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..+..++..+.+.+...+..|+..+..+. ..-++|.|..+|.+.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 35678888888888888888887743322 2346899999999999999999998665542
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhH------------HHHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRG------------KKDA 537 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~------------~~~A 537 (715)
...+++.++..|....+..+|..|+.+|..+-. ..++..|+.++.+..... +..+
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 567889999999853388999999999988754 455888888887655322 2222
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHH
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~k 615 (715)
+.+|..+ -..-.++.+..++.+ ..++..+..+|..+.... ... .+.+...+...+...+
T Consensus 170 ~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~-~~~l~~~~~~~~~~vr 230 (335)
T COG1413 170 AEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEA-ADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhH-HHHHHHHhcCCCHHHH
Confidence 2222211 111356777788763 468888888888876543 222 4666667766677777
Q ss_pred HHHHHHHHHH
Q 038217 616 ENAVAALLEL 625 (715)
Q Consensus 616 e~A~~~L~~L 625 (715)
..++..|..+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 6666555443
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0034 Score=64.76 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=45.5
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+++.-.||+|+.--.+|..+ .+|..||..||..+... ...||+|+.|...
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 4567888999999999999877 67999999999999996 8899999987654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.17 Score=60.02 Aligned_cols=220 Identities=16% Similarity=0.102 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhh-hhcCchhhhhhhhhcCcHHHHHHHHhc
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN-LSIYDKNKSRIMDEEGCLGSIVKVLRF 485 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~n-Ls~~~~nk~~I~~~~g~i~~Lv~lL~~ 485 (715)
+.+|+.-|..+..-.+=.-..-..-|+.|.+++||.+...+++---+-+=.+ |+.++..+..++ +.++-.-++.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEecC
Confidence 4455555555543333222222345999999999999988887765555544 577777788888 77777777777766
Q ss_pred C--CCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcC-ChhHHHHHHHHHHHhhc-CCccHHHHHHhCCh
Q 038217 486 G--LTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLST-HTDNCVRMIEAGAV 560 (715)
Q Consensus 486 ~--~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v 560 (715)
+ .+.|-|..|+-+|..+..+-. ......+ .+.|-..+..|+++ .+-.+.-.+-+|..|-. ++++|-.=++.++.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 2 245888888888888877644 3444444 67888778888775 46677888888888876 46677777899999
Q ss_pred HHHHHhhCCh--hHHHHHHHHHHHHhCC-----cchHHHH---h--------hhCCcHH----HHHHHhhcCChHHHHHH
Q 038217 561 TALVGALGHE--GVAEEAAGALALIVRQ-----PIGAAAV---G--------EEEMAVT----GLVGMMRCGTPRGKENA 618 (715)
Q Consensus 561 ~~Lv~lL~~~--~~~~~al~~L~~La~~-----~e~~~~i---~--------~~g~~I~----~Lv~lL~~~s~~~ke~A 618 (715)
..|..+|+|+ +++..|+-+|..+.++ ++....+ + -... +. .++.++..|++-.+..-
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~-i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL-IIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH-HHhhHHHHHHHHhccchHHHHHH
Confidence 9999999864 8999999999887653 2322222 1 1112 33 66777888999888777
Q ss_pred HHHHHHHHhcC
Q 038217 619 VAALLELCRSG 629 (715)
Q Consensus 619 ~~~L~~L~~~~ 629 (715)
+.+|..+..+.
T Consensus 724 ~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 724 VVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHhh
Confidence 77787777654
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.36 Score=48.63 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLG 477 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~ 477 (715)
.-.+.|+.-++-++. +++.|..+.++..=-.|-.+|.. +..-++-.+++++..|...++. -..+. ..++||
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence 345778888888886 48999999988766566777754 3567889999999999876643 33344 799999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHH--------HHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA--------TLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv--------~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++.+..| +...+..|+-++..+-.+|..-..|+....-+..+. .+.+.++++..|.++.+..+|+.++.
T Consensus 172 lCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999 999999999999988888876555554333222222 23345778999999999999999886
Q ss_pred cHHHHH
Q 038217 550 NCVRMI 555 (715)
Q Consensus 550 n~~~iv 555 (715)
.|..+.
T Consensus 251 ar~aL~ 256 (293)
T KOG3036|consen 251 ARAALR 256 (293)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0016 Score=65.15 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=44.8
Q ss_pred CCCCcCccCcccccCce----------eCCCccHhhHHHHHHHHHhC-CCCCCCCccccccCCCCcc
Q 038217 289 PKDFCCPIMLDLMRDPV----------IISTGQTYDRRSIARWMEEG-HRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv----------~~~cghtfcr~cI~~w~~~~-~~~CP~c~~~l~~~~l~pn 344 (715)
.++-.|.+|++-+.+.+ .++|+|.|...||..|+.-| ..+||.|++..+...+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 34678999998776555 66999999999999999865 5799999988766655444
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.21 Score=57.95 Aligned_cols=224 Identities=18% Similarity=0.134 Sum_probs=150.8
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHh-hhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAML-NLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATL 499 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~-nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 499 (715)
...-|...++.|+...|+++.........-++..+|. .++..... ...+++++...+.+....-....++-++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3566667788899999999998888888888888887 22211110 2345666666665531222345678889
Q ss_pred HHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHH-HHHh-CChHHHHHhhC--ChhHHH
Q 038217 500 FSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR-MIEA-GAVTALVGALG--HEGVAE 574 (715)
Q Consensus 500 ~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~-iv~a-G~v~~Lv~lL~--~~~~~~ 574 (715)
.||++.++ .|..|.. .-+++.+-.++..+++..+..++..+.||..++..-.+ +++. ...+.....+. ++....
T Consensus 567 tnLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILK-EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHH-HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 99987655 6777776 55566666667778899999999999999988875444 3442 33444444443 455666
Q ss_pred HHHHHHHHHhCCcchHHH-HhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc
Q 038217 575 EAAGALALIVRQPIGAAA-VGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT 653 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~-i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s 653 (715)
.+.+++..++...++.-. +.+.-.+...++.++.++++.+|...+.+.+++... +.+....+.. ...++.+..+..-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~-~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFE-TEVMELLSGLQKL 723 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhcc-chHHHHHHHHHHh
Confidence 677777766655443333 444333378899999999999999999999885544 3677777776 6666666665544
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0026 Score=47.66 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=39.8
Q ss_pred CcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.|.||.+-..|.|+..|||- .|..|-.+.++.++..||.|+.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 479999999999999999995 5899988888878899999997753
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.71 Score=52.83 Aligned_cols=262 Identities=15% Similarity=0.115 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC--HHHHHHHHHHHhhhhcCchh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN--PVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d--~~~~~~A~~aL~nLs~~~~n 465 (715)
++..+..+...|.|.++-.++-|+..+.++.. .++++.+.. =|| ++|-+++ .-++..|+.+|+.|-...
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-- 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-- 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC--
Confidence 45567777888888888889999999988774 466666553 244 6776654 346666666666664432
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcC-------------C
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLG-------------T 530 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~-------------~ 530 (715)
-..+- ..+....++++|... +..+...+...+..|+... +++....- ++..|.++.... .
T Consensus 180 pDl~~-~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~ 254 (938)
T KOG1077|consen 180 PDLVN-PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPA 254 (938)
T ss_pred ccccC-hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCCC
Confidence 23333 457888999999887 6777788888888887643 35555533 455555554321 1
Q ss_pred hhHHHHHHHHHHHhhcCC--ccHHHHHHhCChHHHHHhhCC----h-----hHHHHHHHHHHHHhCCcc-hHHHHhhhCC
Q 038217 531 PRGKKDAVTALFNLSTHT--DNCVRMIEAGAVTALVGALGH----E-----GVAEEAAGALALIVRQPI-GAAAVGEEEM 598 (715)
Q Consensus 531 ~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~v~~Lv~lL~~----~-----~~~~~al~~L~~La~~~e-~~~~i~~~g~ 598 (715)
|=.....+.+|.+.=.-. .++.++.+ +...++...++ . ..+...+--.-+|+.+-+ ..+.+.+ .
T Consensus 255 PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~ 330 (938)
T KOG1077|consen 255 PWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--A 330 (938)
T ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--H
Confidence 224445555555552222 23444332 22333333321 1 112222222334444433 3333333 2
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhh
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF-TGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+..|..++.+.....|-.|+..+..||... ....++.. . .+.+...++ ..+..++++|..||-.|.+..
T Consensus 331 -~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~-h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 -VNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKK-H--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred -HHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHH-H--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 677888888878888888888888888773 34455544 3 666777777 557788888888888887643
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0045 Score=61.16 Aligned_cols=54 Identities=15% Similarity=0.442 Sum_probs=46.7
Q ss_pred CCCCcCccCcccccCce---eC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 289 PKDFCCPIMLDLMRDPV---II-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv---~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
..-|.||+|.+.+.+.+ .+ +|||.+|..|.++.+.. ...||+|+.++..+++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 36799999999998865 22 99999999999998776 889999999999988765
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.43 Score=53.98 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=132.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.++.-+....|..+..++..|..+++.. .-........+||.|...|-+.++++++.+..+|.+++...+|....
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~- 332 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ- 332 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-
Confidence 5566666666568889999999999888764 34445556689999999999999999999999999998887776622
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHH----hhcCChhHHHHHHHHHHHhhc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATL----LRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~L----L~~~~~~~~~~A~~aL~nLs~ 546 (715)
-.+|.|++-+..+ +..+. .++..|....-. .. +. .-.+..++-+ +.+.+...++.++.++.|+|.
T Consensus 333 ---~~ip~Lld~l~dp-~~~~~----e~~~~L~~ttFV-~~-V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 333 ---KIIPTLLDALADP-SCYTP----ECLDSLGATTFV-AE-VD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred ---HHHHHHHHHhcCc-ccchH----HHHHhhcceeee-ee-ec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3678888888775 32222 223333221100 00 01 2233333444 444566788999999999998
Q ss_pred CCccHHHHHHhCChHHHHHhhC------ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG------HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAV 619 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~------~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~ 619 (715)
--++...+.. .++.|+.-|+ .++++..+..+|..+-..- |... ..+. +|.+.+.+.. .+...+.-++
T Consensus 402 LveDp~~lap--fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~-g~~~--f~d~-~p~l~e~~~~~k~~~~~~g~a 475 (569)
T KOG1242|consen 402 LVEDPKDLAP--FLPSLLPGLKENLDDAVPEVRAVAARALGALLERL-GEVS--FDDL-IPELSETLTSEKSLVDRSGAA 475 (569)
T ss_pred hhcCHHHHhh--hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhhc--cccc-ccHHHHhhccchhhhhhHHHh
Confidence 6544444322 2333433332 4678888887776553211 1111 1233 5666665543 2333344444
Q ss_pred HHHHHHHhcC
Q 038217 620 AALLELCRSG 629 (715)
Q Consensus 620 ~~L~~L~~~~ 629 (715)
..|..++.+.
T Consensus 476 q~l~evl~~~ 485 (569)
T KOG1242|consen 476 QDLSEVLAGL 485 (569)
T ss_pred hhHHHHHhcc
Confidence 4455555444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.034 Score=59.58 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=46.3
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
+.|.|++++.++||+- .+||.|+|.-|++++.+ ...||.+++++..+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4799999999999988 69999999999999998 789999999998877655
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.033 Score=61.33 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=167.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh--hh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN--KS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n--k~ 467 (715)
..++.|+..|+..+.-..--+...+.++.-.-...+..+.+.|+|..|+.++.++|..+|.+.+|.|..+--+.++ |-
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 4556777777765544455566777777655556788899999999999999999999999999999999876644 55
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch----hHHH---HhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE----YKKK---IADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~---I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
... ..-++..++++...+ ...+++....+|+|+..+.. .+.. +....-..+.|++.+...+|-.....+-.
T Consensus 511 ~~L-akig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi 588 (743)
T COG5369 511 KFL-AKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI 588 (743)
T ss_pred hhH-HhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence 666 678899999999887 88999999999999987432 1211 11111245567777777777666677888
Q ss_pred HHHhhcCCccHHHHHHh--CChHHHHHhh----CC----h-hHHHH----HHHHHHHHhCCcchHHHHhhhCCcHHHHHH
Q 038217 541 LFNLSTHTDNCVRMIEA--GAVTALVGAL----GH----E-GVAEE----AAGALALIVRQPIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a--G~v~~Lv~lL----~~----~-~~~~~----al~~L~~La~~~e~~~~i~~~g~~I~~Lv~ 605 (715)
|.+++.++++...++.. ..+..+-..| ++ + ..-++ -.....++..+ +++ ...++.
T Consensus 589 lv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~---------~d~-f~r~~~ 658 (743)
T COG5369 589 LVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN---------SDK-FKRLVL 658 (743)
T ss_pred HHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc---------ccc-ccccee
Confidence 99999888887776633 3333332222 11 0 00000 00111111111 111 111111
Q ss_pred ------Hhhc----CChHHHHHHHHHHHHHHhcC--------CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 606 ------MMRC----GTPRGKENAVAALLELCRSG--------GASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 606 ------lL~~----~s~~~ke~A~~~L~~L~~~~--------~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+.. .+.+.--...+...++.... ..+.++.+.. .|+-+-|+.+....++.+++|+..+|.
T Consensus 659 ~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~q~~~Sl~vrek~~taL~ 737 (743)
T COG5369 659 TTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKIQAKDSLIVREKIGTALE 737 (743)
T ss_pred cCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 1111 12222223333333322111 1245556665 888888888888889999999999888
Q ss_pred HHH
Q 038217 668 VFQ 670 (715)
Q Consensus 668 ~l~ 670 (715)
.++
T Consensus 738 ~l~ 740 (743)
T COG5369 738 NLR 740 (743)
T ss_pred hhh
Confidence 775
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.8 Score=42.42 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=146.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHH-hhc------c-----CCHHHHHHHHHHHhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRN-LLS------T-----HNPVAQENSVTAMLN 458 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~-lL~------s-----~d~~~~~~A~~aL~n 458 (715)
+..++-.|.++.. +..|+.+|..--+..++....+... |.+..|++ .+. . ....-..+|+..|.-
T Consensus 28 ~~~~i~~l~~~p~--rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 28 AYQLILSLVSPPT--REMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred hhhHHHHhhCCch--HHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 5666666665544 5667877777665555665555554 66665554 221 1 123445778888888
Q ss_pred hhcCchhhhhhhhhcCcHHHHHHHHhc----CCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChh
Q 038217 459 LSIYDKNKSRIMDEEGCLGSIVKVLRF----GLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPR 532 (715)
Q Consensus 459 Ls~~~~nk~~I~~~~g~i~~Lv~lL~~----~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~ 532 (715)
++.+++.|..+. .+-.---+-.+|.. ...+-.|..+++++..|..+++ .-..+.. .+.||..++.+..|++.
T Consensus 106 vASHpdTr~~FL-~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 106 VASHPDTRRAFL-RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPLCLRIMESGSEL 183 (293)
T ss_pred HhcCcchHHHHH-HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHHHHHHHhcccHH
Confidence 899999999998 55433333334432 2234578999999999988765 3333444 89999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHH----hCCh----HHHHHhh-C--ChhHHHHHHHHHHHHhCCcchHHHHhhhCC---
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIE----AGAV----TALVGAL-G--HEGVAEEAAGALALIVRQPIGAAAVGEEEM--- 598 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~----aG~v----~~Lv~lL-~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~--- 598 (715)
.+.-|..++..+-.++.+-..+.. .-+| ..++.-| + +..+..+.+.+..+|+.++..|.++...--
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L 263 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL 263 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence 999999988888777764433332 1222 2233323 2 568889999999999999988888754211
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 599 AVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.=.....+++ .++..|..-...+.++|.
T Consensus 264 rd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 264 RDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred ccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 0012223343 344455444445555553
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.049 Score=47.73 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHH--hhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 572 VAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGM--MRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 572 ~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~l--L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
++...+.+|+||+. ++..+..+.+.|| |+.++.. +...+|-.+|.|+.++.+||.++ ++.++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n-~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN-PENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC-HHHHHHH
Confidence 35677899999987 5779999999999 9999984 45578999999999999999987 3444333
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0071 Score=62.90 Aligned_cols=53 Identities=15% Similarity=0.463 Sum_probs=42.8
Q ss_pred CCCCCcCccCcccccC--c-eeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC
Q 038217 288 IPKDFCCPIMLDLMRD--P-VII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV 342 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d--P-v~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~ 342 (715)
-...|.|||++..|.. + |.+ +|||+|+..+|.+.- ....||.|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4568999999999954 2 333 999999999999873 356799999999988754
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.093 Score=57.95 Aligned_cols=197 Identities=12% Similarity=0.021 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHHHHhcC
Q 038217 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 408 ~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
..++..|..+++.-...|.-+.+....++|+++|+.++..+.--+...++|+...- +-+..+. ..|.|..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL-~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFL-EKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHH-HhhHHHHHHHHhhcc
Confidence 44555666777666677888889999999999999877777777888899986544 4488888 999999999999877
Q ss_pred CCHHHHHHHHHHHHHhccCchhH--HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-cc---HHHHHHhC--
Q 038217 487 LTTEARENAAATLFSLSAVHEYK--KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DN---CVRMIEAG-- 558 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~--~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n---~~~iv~aG-- 558 (715)
+...+.+..|+|+.|-.+..+- -+..+ .-++..++.+.+++.-.++...+-.|.|+.-+. .| +.-+.++-
T Consensus 486 -DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 486 -DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred -hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 7889999999999998776543 34444 567888999987766688899999999996532 22 22222221
Q ss_pred --ChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHh
Q 038217 559 --AVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 559 --~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL 607 (715)
....|+..+. ++-.....+-+|.++|..++ -+..+.+....+..+-++|
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 2334555553 55444445666666655555 4445555444344444444
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.054 Score=47.51 Aligned_cols=64 Identities=28% Similarity=0.332 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHhhhhcCc-hhhhhhh
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL--STHNPVAQENSVTAMLNLSIYD-KNKSRIM 470 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~ 470 (715)
+...++.|.+++..++.++..+.+.|+||.++..- ...+|-+++.|+.++.||+... +|+..|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45678889999999999999999999999998864 4578999999999999998865 7777776
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0041 Score=50.79 Aligned_cols=48 Identities=19% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCcCccCccccc-C---ceeC----CCccHhhHHHHHHHHHh--CC--------CCCCCCcccccc
Q 038217 291 DFCCPIMLDLMR-D---PVII----STGQTYDRRSIARWMEE--GH--------RTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~-d---Pv~~----~cghtfcr~cI~~w~~~--~~--------~~CP~c~~~l~~ 338 (715)
+..|+||..... + |+.+ .|+++|-..|+.+||.. +. ..||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999998754 2 5544 58999999999999985 11 259999987753
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.81 Score=55.37 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=129.5
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCc
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGA 518 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~ 518 (715)
++.+..+|..+..+|-.|+........... .......|.+.+++. +..++..++.+|..|-.. .++...| ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i---~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI---PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH---HHH
Confidence 345788999999999999877432221110 122344444555554 445555555555555322 3444444 335
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhC------ChHHHHHhhC-----Ch-hHHHHHHHHHHHHhCC
Q 038217 519 VEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAG------AVTALVGALG-----HE-GVAEEAAGALALIVRQ 586 (715)
Q Consensus 519 I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG------~v~~Lv~lL~-----~~-~~~~~al~~L~~La~~ 586 (715)
|+.++=.+++.+...++.|..+|..++. .....+.| .|...+..+. +. .+....+-++..+...
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 6666666677888999999999998873 11122222 3334444442 22 1111112233333221
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
...-....=.+. +..+..+|.++++.+...|++.+..++...++........ -+++.+..++++.+...+.|..-|
T Consensus 816 ~~~~ld~~~l~~l-i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~--~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLEKL-ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE--ELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH--HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111111111122 5556667778999999999999999999887655544443 369999999999999999999887
Q ss_pred HHHHH
Q 038217 666 ARVFQ 670 (715)
Q Consensus 666 L~~l~ 670 (715)
++.|-
T Consensus 893 lekLi 897 (1176)
T KOG1248|consen 893 LEKLI 897 (1176)
T ss_pred HHHHH
Confidence 77664
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.058 Score=48.56 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs 460 (715)
...+..|+..|. +.++....-|+..|..+++..|..|..+-+.|+-..+..|+.++|++++.+|+.++..+-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 347889999994 667778888999999999999999999989999999999999999999999999997764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.32 Score=55.20 Aligned_cols=221 Identities=21% Similarity=0.175 Sum_probs=142.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC------c-hhhh
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY------D-KNKS 467 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~------~-~nk~ 467 (715)
|+....+.+..++..|++.|-.|.....-.+. .....++++++.+..++..|+.++.-++.- . .+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 77777788999999999998887753222221 234567889988889998887766544321 1 1222
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-----------------------------------------
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH----------------------------------------- 506 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~----------------------------------------- 506 (715)
.+. ..++..+.+.+... +..+|..|+.+|..+-...
T Consensus 277 kl~--D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 277 KLK--DAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhH--HHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 332 45677777777665 5555555555544332111
Q ss_pred ----------hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC-CccHHHHHHhCChHHHHHhhCCh--hHH
Q 038217 507 ----------EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH-TDNCVRMIEAGAVTALVGALGHE--GVA 573 (715)
Q Consensus 507 ----------~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~aG~v~~Lv~lL~~~--~~~ 573 (715)
+....|.. +|+--++|.=|.++-.+++++|+..++.|+.+ +..-.. ++..|+.++.|+ .++
T Consensus 354 ~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHH
Confidence 11112233 45555666666554568899999999999864 444333 477899999865 888
Q ss_pred HHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 574 EEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 574 ~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
..|..+|..++.+ ..++..- ++.+.+.|...++.+|+..-..|.+ |.....++....
T Consensus 428 L~ai~aL~~Is~~-----l~i~eeq-l~~il~~L~D~s~dvRe~l~elL~~-~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 428 LKAIFALTMISVH-----LAIREEQ-LRQILESLEDRSVDVREALRELLKN-ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHHHH-----heecHHH-HHHHHHHHHhcCHHHHHHHHHHHHh-cCCCcHHHHHHH
Confidence 9999999998765 2233444 7888888888899999877766654 555444444333
|
|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.013 Score=63.47 Aligned_cols=51 Identities=16% Similarity=0.381 Sum_probs=40.0
Q ss_pred CCCCCcCccCccccc-----------------CceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMR-----------------DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~-----------------dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+..-|+||+.... +-+..+|.|.|.+.|+++|...-.-.||+|+.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 566778999986432 122348999999999999999756799999998864
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.021 Score=46.43 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=35.0
Q ss_pred CcCccCccccc----CceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 292 FCCPIMLDLMR----DPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 292 ~~CpIc~~lm~----dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
-.||-|.--|. =|+.. .|.|.|-..||++|+.. ...||.++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 36777776442 14444 79999999999999998 789999998753
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.3 Score=49.39 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=143.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhh----------------HHHHHH--cCChHHHHHhhcc-------CCHHH
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKEN----------------RAFIAK--AGAIPHLRNLLST-------HNPVA 448 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~----------------r~~i~~--~G~i~~Lv~lL~s-------~d~~~ 448 (715)
.-+...+|.+.++..++++-....|.+..+. +..... .+.+|.|+.+|.. ++...
T Consensus 263 itl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp 342 (859)
T KOG1241|consen 263 ITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNP 342 (859)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcH
Confidence 3345566788888888877777666543331 111111 2667888887754 23345
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhh
Q 038217 449 QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLR 527 (715)
Q Consensus 449 ~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~ 527 (715)
...|-.+|.-++..-. ..|+ .-+++-+-.-++++ +..-|+.|+-++.+.-..++ .+..-.. .+++|.+++++.
T Consensus 343 ~kAAg~CL~l~A~~~~--D~Iv--~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~ 416 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVG--DDIV--PHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMS 416 (859)
T ss_pred HHHHHHHHHHHHHHhc--ccch--hhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhc
Confidence 5666666665553322 3344 23455444556677 88888888888877765444 4444333 689999999998
Q ss_pred cCChhHHHHHHHHHHHhhcC-CccHH-HHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhCC-c----ch-HHHHhhhCC
Q 038217 528 LGTPRGKKDAVTALFNLSTH-TDNCV-RMIEAGAVTALVGALG-HEGVAEEAAGALALIVRQ-P----IG-AAAVGEEEM 598 (715)
Q Consensus 528 ~~~~~~~~~A~~aL~nLs~~-~~n~~-~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~~-~----e~-~~~i~~~g~ 598 (715)
+.+--++..+.++|..++.. ++-+. ...-.+.++.++.=|. .+.+..+++|++.+|+.. . ++ ...... ..
T Consensus 417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~ 495 (859)
T KOG1241|consen 417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PF 495 (859)
T ss_pred CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hh
Confidence 66667788889999888764 32111 1223355666666665 579999999999999842 1 11 111111 12
Q ss_pred cHHHHHH-Hhhc------CChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 599 AVTGLVG-MMRC------GTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 599 ~I~~Lv~-lL~~------~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
.+.++. ++.. .....|-.|-.+|..+..++++.+...++
T Consensus 496 -y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 496 -YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred -HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 233333 3332 12456888888999988888665544443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.34 Score=49.63 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHH
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLG 477 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~ 477 (715)
.-.+.|+.-++-+|. +++.|..+.++...-.|..+|...+ ..++-..++++..|.+.++. -.-+. ..+.+|
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiip 142 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHH
Confidence 345788888888996 5899999999999888899997643 45778888999999875543 34444 789999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh--------hcCChhHHHHHHHHHHHhhcCCc
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL--------RLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL--------~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++.++.| +.-.+..|+-++..+-.++..-..+++...-+..+...| ...+++..|..+.+-..|+.++.
T Consensus 143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 999999999 989999999999999888877777766444343333332 34678999999999999999998
Q ss_pred cHHHHHH
Q 038217 550 NCVRMIE 556 (715)
Q Consensus 550 n~~~iv~ 556 (715)
.+..+..
T Consensus 222 ar~aL~~ 228 (262)
T PF04078_consen 222 AREALRQ 228 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.2 Score=49.17 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~ 467 (715)
|.....++.+|++.-+.++.+|+..+..+.-..|+.- .-.+|.|+.=|..+|+.++-.|+.+++.|+. ++.|--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 5567788899999999999999999988775544431 1357889999999999999999999999986 456555
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHH--Hh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALF--NL 544 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~--nL 544 (715)
.+. |.+.++|....+-=.......+..+|+.... .+|. ..+++|.+++.+-. ....=.++.++. |+
T Consensus 218 ~LA------P~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 218 QLA------PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ccc------HHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 444 5666676553222233344555556655433 4443 57889999987543 222223333322 44
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+....++...+.. ++..|-.++. |+.++-.++-++..++. ++. ++.++ -..+++.|...++.+|-.|+..
T Consensus 287 s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa~---kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 287 SSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQAH---KDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHHh---HHHHHHHhccCCchhHHHHHHH
Confidence 4444455554444 5666766664 67888888888887764 332 22222 2577888988899999999999
Q ss_pred HHHHHhc
Q 038217 622 LLELCRS 628 (715)
Q Consensus 622 L~~L~~~ 628 (715)
|..+...
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 9888765
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.67 Score=51.65 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCCh----hHHHHHHHHHHHhhcCCccH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTP----RGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~----~~~~~A~~aL~nLs~~~~n~ 551 (715)
...+.+++.+| +...+..|...|.+||.+......... ..++..|..++.+|.. ......+.++..|-.+.-.-
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34556788888 888888899999999999998888888 7889999999988764 44555555555543322211
Q ss_pred HHHHHhCChHHHHHhhC----ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 552 VRMIEAGAVTALVGALG----HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~----~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
...+....|.....+.. +..+...|+.+|.++...+. -+..+.++-- +..|+..++.++...+..|.+.+-.+-
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~-i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVP-IETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCc-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11222223333444432 55778899999999988766 5555666556 999999999999999999988887777
Q ss_pred hcCCHHHHHH
Q 038217 627 RSGGASATER 636 (715)
Q Consensus 627 ~~~~~~~~~~ 636 (715)
...++..+..
T Consensus 242 ~~a~~~~R~~ 251 (713)
T KOG2999|consen 242 RKAPDDKRFE 251 (713)
T ss_pred hhCChHHHHH
Confidence 6655443333
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.1 Score=49.67 Aligned_cols=274 Identities=9% Similarity=0.062 Sum_probs=166.4
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhh-cc-CCHHHHHHHHHHHhhhhcCch-
Q 038217 390 ATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLL-ST-HNPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL-~s-~d~~~~~~A~~aL~nLs~~~~- 464 (715)
+.+..|++...... ...+..++..|..+|.+ -+-....... .++..++.-. +. ++..++-.|+.+|.|--..-.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 56777777776543 34778899999999964 2333222233 4555666543 33 578899999999998644322
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
|-..=....-.+..+++.-++. +.+++..|...|..+...- .....++. ..+.--+.-++++++++.-.|+..=.
T Consensus 208 nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~~--alfaitl~amks~~deValQaiEFWs 284 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYMEQ--ALFAITLAAMKSDNDEVALQAIEFWS 284 (859)
T ss_pred hhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111110222334445555565 8899999999988776522 22333332 33444455567888888888888777
Q ss_pred HhhcCC-----------------ccHHHHHH--hCChHHHHHhhC--C----h---hHHHHHHHHHHHHhCCcchHHHHh
Q 038217 543 NLSTHT-----------------DNCVRMIE--AGAVTALVGALG--H----E---GVAEEAAGALALIVRQPIGAAAVG 594 (715)
Q Consensus 543 nLs~~~-----------------~n~~~iv~--aG~v~~Lv~lL~--~----~---~~~~~al~~L~~La~~~e~~~~i~ 594 (715)
++|... .++..+.. .+++|.|+++|. | + .....|-..|..++.. ....|+
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv 362 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIV 362 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccch
Confidence 666421 11222222 267888999983 1 1 3344444444444321 112233
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
. .. +|-+-+-+++.+-+.++.|+-++..+-.+..+.....++ .++++.++.++.+.+--+++.+++.+--+.++-
T Consensus 363 ~-~V-l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 363 P-HV-LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred h-hh-HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 2 22 344444666778889999999998887766444444444 456999999999888888999888777666643
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.6 Score=50.63 Aligned_cols=262 Identities=19% Similarity=0.202 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh---
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS--- 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~--- 467 (715)
..+++=+.|.+-...+..+|+..+..+...++ |. +. -++..|-.+|++....+|-.|+.+|..++.-...+.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45677777777788889999999988885432 22 22 277788889999999999999999999875332211
Q ss_pred -----hhhhh---cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CchhHHHHhc------------ccCcHHHHHHH
Q 038217 468 -----RIMDE---EGCLGSIVKVLRFGLTTEARENAAATLFSLSA--VHEYKKKIAD------------ESGAVEALATL 525 (715)
Q Consensus 468 -----~I~~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~I~~------------~~g~I~~Lv~L 525 (715)
.++.. .=+-.++.-+|+.| +.+....-...+.+... .++++..+++ ..+.+..|.++
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 12211 12445666777777 55544443333333322 1223222211 12334444555
Q ss_pred hhc-CChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHH
Q 038217 526 LRL-GTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGL 603 (715)
Q Consensus 526 L~~-~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~L 603 (715)
|++ |.-+.+++...++..... .++.|.. ++..|..++.|-+....+..+|..|-. ||-.+..-.. .|..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~Psk-yir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNPSK-YIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCcch-hhHHH
Confidence 543 223455555555544443 3333433 344456666555556666777766643 1111111111 13444
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 604 VGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 604 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
...+.-.+...|-.|+.+|..+..+.. . .. ..+...|...+.+.++.+++.|...|+.+...+
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~-----~-l~-~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDV-----V-LL-PSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCC-----C-cc-ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 443333467888899999999885531 1 12 345556667777889999999999999998543
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.02 Score=61.13 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=40.8
Q ss_pred CCCCCcCccCcccccCce-----e---CCCccHhhHHHHHHHHHhC------CCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRDPV-----I---ISTGQTYDRRSIARWMEEG------HRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv-----~---~~cghtfcr~cI~~w~~~~------~~~CP~c~~~l~ 337 (715)
.-.+..|-||++...+++ . .+|.|+||..||.+|-... .+.||.|+.+..
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356899999999888877 3 3799999999999998642 378999987653
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.27 Score=55.34 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHcCChHHHHHhh----------ccCCHHHHHHHHHHHhhhhcCch-hhhhhhhhcCcHHH
Q 038217 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLL----------STHNPVAQENSVTAMLNLSIYDK-NKSRIMDEEGCLGS 478 (715)
Q Consensus 410 A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----------~s~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g~i~~ 478 (715)
|+..|+-++++ +.+-..+....++..|.++- ...+..+...|+.+|+|+-.... .|..++ +.|..+.
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~-~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFV-DLGLAEK 78 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHH
Confidence 35667777754 66777777766777777654 23578999999999999987764 477777 9999999
Q ss_pred HHHHHhcC----CCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhc---------C--------ChhHHHH
Q 038217 479 IVKVLRFG----LTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRL---------G--------TPRGKKD 536 (715)
Q Consensus 479 Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~---------~--------~~~~~~~ 536 (715)
++..|+.. .+.+..-....+||-++. ..+.+..+..+.+++..|+..|.. . +....-.
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999875 257888889999998875 556777777767888888876631 0 1234668
Q ss_pred HHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----------ChhHHHHHHHHHHHH
Q 038217 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----------HEGVAEEAAGALALI 583 (715)
Q Consensus 537 A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----------~~~~~~~al~~L~~L 583 (715)
++++|||+..+......--..+.++.++.++. ......+++.+|.|+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 89999999765433222112233444444321 126677788888887
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.67 E-value=4.1 Score=48.84 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=142.6
Q ss_pred HHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhc---CCC----HHHHHH
Q 038217 427 FIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRF---GLT----TEAREN 494 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~---~~~----~e~~~~ 494 (715)
.+.+.||+..|+.+|.+ .+.......+..|..++....||..+. +.|+++.|++.|.. ... .+.-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll-~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALL-ELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHH-HcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 35678999999999975 345677778888888899999999999 89999999999852 112 455566
Q ss_pred HHHHHHHhccCch---hHHHHh--c-------ccCcHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCCccHHHHHHhC
Q 038217 495 AAATLFSLSAVHE---YKKKIA--D-------ESGAVEALATLLRLG----TPRGKKDAVTALFNLSTHTDNCVRMIEAG 558 (715)
Q Consensus 495 Aa~~L~~Ls~~~~---~~~~I~--~-------~~g~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~aG 558 (715)
...++..|...-. ...... . ...-+..|++.+.+. ++......+.+|-+|+.....+...+-.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~- 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE- 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence 6666665543221 111111 0 122366666666542 4677888899999999877655443211
Q ss_pred ChHHHHHhhC-C------hhH-HHHHHHHHHHHhCCc---chHHHHhhhCCcHHHHHHHhhcC--------ChHH-----
Q 038217 559 AVTALVGALG-H------EGV-AEEAAGALALIVRQP---IGAAAVGEEEMAVTGLVGMMRCG--------TPRG----- 614 (715)
Q Consensus 559 ~v~~Lv~lL~-~------~~~-~~~al~~L~~La~~~---e~~~~i~~~g~~I~~Lv~lL~~~--------s~~~----- 614 (715)
.+.+.+.+=. | ..+ .+..+.+..++-.+. .-|..|++.|. +...+++|... +++-
T Consensus 270 ~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GI-v~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 270 HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGI-VQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhH-HHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1222222211 1 112 222223333332222 35677888888 88888877653 2223
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 615 ---KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 615 ---ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
-..++..|.-||.+. ...+ .++. .++++.|..|-+.. +..+-..|..+|..+++
T Consensus 349 ~psLp~iL~lL~GLa~gh-~~tQ-~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGH-EPTQ-LLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcC-HHHH-HHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 345778888888774 3333 3344 56677777666544 34444455556655544
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1 Score=53.01 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=55.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
..+.+=|.++++.+|..|+.++..+-. ..+. ..+++++.+.+..+ +..+|..|+-+++.+=..+ +....+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~--~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV-----KELL--GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh-----HHHH--HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 333334445666666666666555421 1222 34566666666666 6666666666666664322 122222
Q ss_pred ccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.|.+..+..++.+.++.+..+|+.+|..+.
T Consensus 165 -~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 165 -LGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred -ccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 556666666666666666666666666553
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.059 Score=41.47 Aligned_cols=55 Identities=25% Similarity=0.053 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 489 TEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 489 ~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+.+|..|+.+|.+++........-.. ..+++.|+.+|+++++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36789999999998876655444444 68999999999988889999999999875
|
... |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=7.3 Score=45.05 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
+...+.+.-+++.+-+.-...+.. .+..|.++|++....++.-|+..++.|+........+- .. .+.++..|+..
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHhccc
Confidence 344555555666555444444443 57788899999889999999999999988866556555 44 88899999976
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-C-Cc------cHH------
Q 038217 487 LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-H-TD------NCV------ 552 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~-~~------n~~------ 552 (715)
.+..+|+.|+..|..++.. +|.+.|++ .|++.|...+...+++-+.=..-|+. + .+ ..-
T Consensus 381 rDvSirrravDLLY~mcD~-~Nak~IV~------elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria 453 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDV-SNAKQIVA------ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA 453 (938)
T ss_pred cchHHHHHHHHHHHHHhch-hhHHHHHH------HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence 6999999999999998764 45555654 56666665555544433322222221 0 11 111
Q ss_pred -HHHHhCChHHHHHhh-CChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHH----------------HHHHHhhc----C
Q 038217 553 -RMIEAGAVTALVGAL-GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVT----------------GLVGMMRC----G 610 (715)
Q Consensus 553 -~iv~aG~v~~Lv~lL-~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~----------------~Lv~lL~~----~ 610 (715)
..++.++-..+++++ .+++++..|+.-+...-..+...+.|++.||.|- .+..++.+ .
T Consensus 454 gd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~ 533 (938)
T KOG1077|consen 454 GDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLC 533 (938)
T ss_pred cccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccC
Confidence 112223444455555 3668888888777765555777788888777321 11112222 3
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 611 TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 611 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
++..|---+.+...++...+ +....+++ .+..-...-+...++.|.+-|++...
T Consensus 534 s~~tr~lLLtTyiKl~nl~P-Ei~~~v~~------vFq~~~n~~D~ElQqRa~EYLql~k~ 587 (938)
T KOG1077|consen 534 SPVTRALLLTTYIKLINLFP-EIKSNVQK------VFQLYSNLIDVELQQRAVEYLQLSKL 587 (938)
T ss_pred ChhHHHHHHHHHHHHHhhCh-hhhHHHHH------HHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 45555555556666666653 23222222 22222333477778888877776654
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.87 Score=46.69 Aligned_cols=191 Identities=11% Similarity=0.073 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhh-------ccCC-----HHHHHHHHHHHhhhhcCchhhhhh
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLL-------STHN-----PVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL-------~s~d-----~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
+++.+..|+.+|..--...++....+... |.+..|++=. +.+. ..-..+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 57778898888876554445666666655 7777775522 2221 234567777777889999999999
Q ss_pred hhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
. ++...--|.-+|+... -+-.|-.+.+++..|...++ .-..+.. .+.||..++.+..|++-.|.-|.-.+..
T Consensus 88 l-~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 L-KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp H-HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred H-HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9 7776555555664421 24578899999999988554 3344455 8999999999999998888889998888
Q ss_pred hhcCCccHHHHHH--------hCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhh
Q 038217 544 LSTHTDNCVRMIE--------AGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGE 595 (715)
Q Consensus 544 Ls~~~~n~~~iv~--------aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~ 595 (715)
+-.++.+-..+.. ..++..++.-|. ++.+..+.+.+-..|+.++.++.++.+
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8776654333321 123344444442 568889999999999999999988865
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.63 Score=53.92 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
....|.+.++++++.+|..|+-.+.++-. .+.......|.++.|-.++.+.++.+..+|+.+|..+...+.
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 56778888999999999998887777653 455667788999999999999999999999999999976654
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.054 Score=40.83 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=31.8
Q ss_pred cCccCcc--cccCceeCCCc-----cHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 293 CCPIMLD--LMRDPVIISTG-----QTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 293 ~CpIc~~--lm~dPv~~~cg-----htfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
.|.||++ .-.+|.+.+|. +.+-+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 44567777874 66899999999986 366899985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.3 Score=44.62 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=148.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcC-ChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAG-AIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
++-++-.+.-|+..+.++... ++.|..+-..+ .-..++.+|+. ++.++|.+.+-+++.|+.+..-.+.|-..-..+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344556788899999999965 78888766554 44567778876 678999999999999998887665554335677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcC---ChhHHHHH--------------
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLG---TPRGKKDA-------------- 537 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A-------------- 537 (715)
..++.+.+......+...+++++.++..-. .+-...+- .|-+..-|++|.++ +++.+.+-
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 888888877545567788889999887622 23333333 45566666666542 12222111
Q ss_pred -HH--HHHHh-------hc-------CCccHHHHHHh--CChHHHHHhhC--Chh-HHHHHHHHHHHHhC-CcchHHHHh
Q 038217 538 -VT--ALFNL-------ST-------HTDNCVRMIEA--GAVTALVGALG--HEG-VAEEAAGALALIVR-QPIGAAAVG 594 (715)
Q Consensus 538 -~~--aL~nL-------s~-------~~~n~~~iv~a--G~v~~Lv~lL~--~~~-~~~~al~~L~~La~-~~e~~~~i~ 594 (715)
.. .+..| |. .++|...+.+- ..+..|.++++ ++. ...-|+.-+..+.+ .||++.-+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 10 11111 11 11356666554 45888888885 332 33334444444433 699999999
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
..|+ =..+++++.+.++++|=.|+.++..+-
T Consensus 397 Kyg~-k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGV-KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hhhh-HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999 899999999999999999999986543
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.96 Score=51.49 Aligned_cols=211 Identities=19% Similarity=0.146 Sum_probs=123.1
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-------hhH
Q 038217 437 LRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-------EYK 509 (715)
Q Consensus 437 Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-------~~~ 509 (715)
|..+-.+.|..++.+|+.+|+.|+..-.-- .-.....++.++.. ...+|..|..+++..+... .+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 666677788899999999998887633211 12334556666665 6777777777776654322 011
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc---------------------------------C---------
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST---------------------------------H--------- 547 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~---------------------------------~--------- 547 (715)
.... ..++..+.+.+++.+-.++..|+++|..+-. .
T Consensus 276 ~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 276 EKLK--DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhH--HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 1111 1344455555544333333333332221110 0
Q ss_pred ---------CccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHH
Q 038217 548 ---------TDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKE 616 (715)
Q Consensus 548 ---------~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke 616 (715)
++.-..++..|+=.+++.-|.|+ +++..|+..+..|+.+.-+-. ... +.-|++++.+.-..+|.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~a-ldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRA-LDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHH-HHHHHHHhccHHHHHHH
Confidence 01122344556666777777777 899999999999986433221 123 78899999888889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 617 NAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 617 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.|+.+|..++.+. .+. ...++.+..-+.+.+..++..+..+|+..
T Consensus 429 ~ai~aL~~Is~~l------~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHL------AIR--EEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHh------eec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999998763 111 11244455555555555555555555443
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.034 Score=56.78 Aligned_cols=49 Identities=18% Similarity=0.381 Sum_probs=38.9
Q ss_pred cCccCcc-cccCceeC----CCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 293 CCPIMLD-LMRDPVII----STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 293 ~CpIc~~-lm~dPv~~----~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
.||+|.. .+..|-+. +|||+.|.+|..+.|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5888883 44555422 8999999999999999999999999987755443
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.092 Score=40.37 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 038217 446 PVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL 502 (715)
Q Consensus 446 ~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 502 (715)
+.++..|+.+|.+++........-. ...+++.|+.+|+++ +.++|.+|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999887765543334 578999999999887 779999999999764
|
... |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.1 Score=46.81 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch
Q 038217 389 RATAELLIQQLANGS----PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~----~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~ 464 (715)
.+..-.|++.+.+.. .-....-++.+-.+.++|++.+..+. |.|-.-|+++-..++..++.+++.++.-.-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 345566667665432 12223344555566677766665543 555566666678888889999888875441
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
-...+ ..++..|-.+|++. ....|-.|..+|-.|+.....+...++ +.+-.|+.+.+......|++.|..
T Consensus 297 -~~~~~--~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vcN-----~evEsLIsd~Nr~IstyAITtLLK- 366 (898)
T COG5240 297 -GSQFV--DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVCN-----KEVESLISDENRTISTYAITTLLK- 366 (898)
T ss_pred -CHHHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeecC-----hhHHHHhhcccccchHHHHHHHHH-
Confidence 12222 23566666677776 788899999999999986655544433 222233344444555555555533
Q ss_pred hcCCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcchHH--------HHhhhCC------cHHHHHHHhh
Q 038217 545 STHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAA--------AVGEEEM------AVTGLVGMMR 608 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e~~~--------~i~~~g~------~I~~Lv~lL~ 608 (715)
....++..+++.. |+.+++=++|+ -+...|+..|+++ .|.-+. .+.+.|| .|..+.+++.
T Consensus 367 TGt~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~--Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 367 TGTEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLL--FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred cCchhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhh--CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 2334455554433 34444333332 2222333333322 111111 1223333 2445555554
Q ss_pred cCChHHHHHHHHHHHHHHhc
Q 038217 609 CGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 609 ~~s~~~ke~A~~~L~~L~~~ 628 (715)
..|..||.|+..|+..-..
T Consensus 443 -~~p~skEraLe~LC~fIED 461 (898)
T COG5240 443 -NDPDSKERALEVLCTFIED 461 (898)
T ss_pred -hCchHHHHHHHHHHHHHhh
Confidence 4667788777766665544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.97 E-value=4.3 Score=47.06 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChH-HHHHhhccCCHHHHHHHHHHHhhhhcCch-hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIP-HLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~-~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~ 467 (715)
..+...+..|++.+..++.+|+..+..++.- -.++......|.+- .|...|...++++.-..+.+|..+...-. .|-
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 3455666788999999999999999888853 22332222222222 25677888889988777777766643221 121
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.=- ..|.+|.|.-+|++. ...+++++...+..++.......-..++...--.|+++|+.-+...+.+|...+.-++
T Consensus 878 ~pP-i~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 878 TPP-IKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CCC-hhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 111 468999999999997 8889999999999998766532222222334457888888777778888877765544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.028 Score=59.70 Aligned_cols=60 Identities=23% Similarity=0.492 Sum_probs=48.0
Q ss_pred CCcCccCcccccCce-----eCCCccHhhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHH
Q 038217 291 DFCCPIMLDLMRDPV-----IISTGQTYDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv-----~~~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
.-+||||++-..-|+ ++.|||-|-..||++|+.. -...||.|.-....+.+.|-+.+|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 358999999887665 3489999999999999953 23579999887777788888777654
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.38 Score=47.50 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHHhhcCCccHHHHHHh----------------CChHHHHHhhCC--------hhHHHHHHHHHHHHhC
Q 038217 530 TPRGKKDAVTALFNLSTHTDNCVRMIEA----------------GAVTALVGALGH--------EGVAEEAAGALALIVR 585 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~n~~~iv~a----------------G~v~~Lv~lL~~--------~~~~~~al~~L~~La~ 585 (715)
.......++.+|.||+..++.+..++.. .++..|+..+.. .+--.....+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445667888899999888877766543 246667777631 2556889999999999
Q ss_pred CcchHHHHhhhCCc---HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhc--CCcHHHHHHHhh
Q 038217 586 QPIGAAAVGEEEMA---VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA--PALVGLLQALLF 652 (715)
Q Consensus 586 ~~e~~~~i~~~g~~---I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--~g~i~~L~~Ll~ 652 (715)
.++||..++....+ +..|+.++.+.|..-|.-+++++.|+|... .....+... .++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999876543 456666677678888999999999999884 445566653 357777776665
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=4.9 Score=47.01 Aligned_cols=224 Identities=16% Similarity=0.122 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hh
Q 038217 387 ANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KN 465 (715)
Q Consensus 387 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~n 465 (715)
..+...+...+.|+..++..+++|+-+...+-...|+.-.. +++.-.++|.+.+..+...++..+..++... ++
T Consensus 139 mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 139 MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 34556777778888999999999998888887777665443 3455556666666666666666666555432 22
Q ss_pred hhhhhhhcCcHHHHHHHHhc----C----------CCHHHHHHHHHHHHHhccCc------------------hhHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRF----G----------LTTEARENAAATLFSLSAVH------------------EYKKKIA 513 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~----~----------~~~e~~~~Aa~~L~~Ls~~~------------------~~~~~I~ 513 (715)
-..+- ..++.+|..|+. + .++=++...+.+|.-|-.++ +.-..+|
T Consensus 214 l~~fr---~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 214 LSYFR---DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHH---HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 22221 134444444431 1 12334555555555554443 3222222
Q ss_pred cccCcHHHHHHHhh-cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHH------------------hhC--ChhH
Q 038217 514 DESGAVEALATLLR-LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVG------------------ALG--HEGV 572 (715)
Q Consensus 514 ~~~g~I~~Lv~LL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~------------------lL~--~~~~ 572 (715)
+ .=..+....++. ..+...+..|+.+|...-.+++|-.+-+. +..|+. .|+ |..+
T Consensus 291 n-AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva---Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 291 N-AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA---LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred h-HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee---hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 2 111111112221 13467788888888888776664333222 333333 333 3355
Q ss_pred HHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 573 AEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 573 ~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+.+|+..+..|.. ..+-..| +..|+++|...++..|...++-+..++...
T Consensus 367 krralELs~~lvn-~~Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 367 KRRALELSYALVN-ESNVRVM------VKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHhc-cccHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 5555555555532 1122211 445666777778888888888777776544
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.034 Score=59.30 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=39.6
Q ss_pred CCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhCC--CCCCCCcc
Q 038217 288 IPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGH--RTCPKTGQ 334 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~--~~CP~c~~ 334 (715)
...-|.|||..+-=. -|+.+.|||..++..+.+..++|. +.||.|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 455689999887654 378889999999999999999887 88999953
|
|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.028 Score=65.21 Aligned_cols=51 Identities=16% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCCCCCcCccCccccc--C---ceeC--CCccHhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 287 SIPKDFCCPIMLDLMR--D---PVII--STGQTYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~--d---Pv~~--~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
.+...-.|+||..++. | |--. .|.|.|.-.|+.+||+. ++.+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3455567999998875 2 3322 58899999999999996 5789999996553
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.037 Score=57.51 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
.++-.||||.---...|..+|+|.-|..||.+++-. ...|=.|+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 367899999998888899999999999999999987 67788886544
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.6 Score=48.05 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCch----hHHHHhcccCcHHHHHHHhhcCC------hh-HHHHHHHHHHHhhcCC
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHE----YKKKIADESGAVEALATLLRLGT------PR-GKKDAVTALFNLSTHT 548 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~I~~~~g~I~~Lv~LL~~~~------~~-~~~~A~~aL~nLs~~~ 548 (715)
..+++ +.+.+.+-.|+-....+..+++ +|+.+.+ .=+++.+=+++..++ +. -+.-++..|...|+.+
T Consensus 17 ~~L~~-~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 17 LKLLK-GKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHhc-ccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 33444 3367777777777788887775 6666777 667888888887532 22 2556788888999988
Q ss_pred c--cHHHHHHhCChHHHHHhhC---Ch------hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHH
Q 038217 549 D--NCVRMIEAGAVTALVGALG---HE------GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKE 616 (715)
Q Consensus 549 ~--n~~~iv~aG~v~~Lv~lL~---~~------~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke 616 (715)
+ ....|+.. ||.|+.+++ |+ .+.+.+...|..++.++.|...++..|+ ++.+.++-.- +..-...
T Consensus 95 ElAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~-~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGG-LRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCc-hHHHHHHHhCCCCchhHH
Confidence 7 56666654 999999994 33 4899999999999999999999999999 9999985443 2333445
Q ss_pred HHHHHHHHHHh
Q 038217 617 NAVAALLELCR 627 (715)
Q Consensus 617 ~A~~~L~~L~~ 627 (715)
.|+.++.-+..
T Consensus 172 lal~Vlll~~~ 182 (698)
T KOG2611|consen 172 LALKVLLLLVS 182 (698)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=3.6 Score=48.92 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=146.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhhhhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKSRIMDE 472 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~I~~~ 472 (715)
.|++++.+.+-+.|.-|...|..-...+..+-..=.+...+..|+++|++.+.++|.-|+.+|.-|+. ..+.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--l--- 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--L--- 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--H---
Confidence 67788999999999999888765443321111111234678889999999999999999999998872 11111 1
Q ss_pred cCcHHHHHHHHhcCCCHHHHHH-HHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-----C-ChhHHHHHHHHHHHhh
Q 038217 473 EGCLGSIVKVLRFGLTTEAREN-AAATLFSLSAVHEYKKKIADESGAVEALATLLRL-----G-TPRGKKDAVTALFNLS 545 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~-Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-----~-~~~~~~~A~~aL~nLs 545 (715)
...++.|..-+-+| ....|.- +.+.....+..+........ +.+++.+...+.. + ....+-.++..|..+-
T Consensus 84 e~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 11233333333333 3334432 33333333433321111112 2334444443332 2 2335666666666553
Q ss_pred cC-CccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHH
Q 038217 546 TH-TDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAA 621 (715)
Q Consensus 546 ~~-~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~ 621 (715)
+. .+--.. ...+....++.-+.. ..++.+++.+|..|+.. -++.... +. +..|++-|.. .++....--+.+
T Consensus 162 sr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~--~l-i~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 162 SRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYV--EL-IEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHH--HH-HHHHHhccCCCCchHHHHHHHHH
Confidence 32 221111 233445555555543 37889999999998752 1111111 12 3444443322 344445555677
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHHhh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALL---FTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
|..+|+..|......+ ..+++.+.... ....+..+++.-..+..|-...
T Consensus 237 l~~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 7888887654322222 23688888888 6778899999887777665433
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.019 Score=65.24 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=42.3
Q ss_pred CCCCcCccCcccccCceeC---CCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 289 PKDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
...-.||+|..-+.|-.+. .|+|.||..||..|.+. ..+||.|+..+...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 4567899999988887654 79999999999999987 78999999877543
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.46 Score=46.96 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhh---------------hcCcHHHHHHHHhcC-----CCHHHHHHHHHHHHHhcc
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMD---------------EEGCLGSIVKVLRFG-----LTTEARENAAATLFSLSA 504 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~---------------~~g~i~~Lv~lL~~~-----~~~e~~~~Aa~~L~~Ls~ 504 (715)
+......++..|.||+..+.....+.. ....+..|++.+..| ....-....+.++.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556677888888887776654441 234788888888663 134556789999999999
Q ss_pred CchhHHHHhcccC-c--HHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHh---CChHHHHHhh
Q 038217 505 VHEYKKKIADESG-A--VEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEA---GAVTALVGAL 567 (715)
Q Consensus 505 ~~~~~~~I~~~~g-~--I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~v~~Lv~lL 567 (715)
.++.|..+..... . +..|+......+.--++-++.+|.|+|.+.+.+..+... +++|.|+--|
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999987443 3 556666666666666778899999999999998888763 4555555444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.8 Score=48.93 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=122.5
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh----hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN----KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n----k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
.|.+|.|...|++....++.+.+..+..++..... |+-|. .--.|+++|++- +.+.|.+|..++..+|.
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd~Lks~-nKeiRR~A~~tfG~Is~-- 759 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR----ICFELVDSLKSW-NKEIRRNATETFGCISR-- 759 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHHHHHHh-hHHHHHhhhhhhhhHHh--
Confidence 48999999999999999999999999999876643 44443 345678888886 89999999999988865
Q ss_pred hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----ChhHHHHHHHHHH
Q 038217 507 EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----HEGVAEEAAGALA 581 (715)
Q Consensus 507 ~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----~~~~~~~al~~L~ 581 (715)
.||- ...+..|++-|+.+..+.+.....++.-.+. -.|-+..|-.+++ +..++...+.+++
T Consensus 760 ----aiGP-qdvL~~LlnnLkvqeRq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 760 ----AIGP-QDVLDILLNNLKVQERQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred ----hcCH-HHHHHHHHhcchHHHHHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 4554 4555555555544332222222222211110 1244444444443 2255655555555
Q ss_pred HHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHH-HHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 038217 582 LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGAS-ATERVLKAPALVGLLQALLFTGTKRARR 660 (715)
Q Consensus 582 ~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~-~~~~l~~~~g~i~~L~~Ll~s~~~~~k~ 660 (715)
-+=.. -|....----...|.|-+.|.+.++.-|.-|..++.+|+-+.+.. .-.+++. ++..|+.=+-..+|.+..
T Consensus 826 fmFey-ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH---LlNllwpNIle~sPhvi~ 901 (975)
T COG5181 826 FMFEY-IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH---LLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHH-HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH---HHHHhhhhccCCCcHHHH
Confidence 44211 111111111121344444666677888888888888887765211 1111111 122233323455777776
Q ss_pred HHHHHHHHHHH
Q 038217 661 KAASLARVFQR 671 (715)
Q Consensus 661 ~A~~lL~~l~~ 671 (715)
.-..-+.-++.
T Consensus 902 ~~~Eg~e~~~~ 912 (975)
T COG5181 902 SFDEGMESFAT 912 (975)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.39 E-value=5.1 Score=45.51 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH---HHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENR---AFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r---~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.+.|...+..|++.+++++.+|+.....+++- -.+. ..+...|.| |..-|...++++.-..+.|++.+...-.-
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKV-LKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 45677888899999999999999888777743 1111 223333433 45566777888887777777766433222
Q ss_pred -hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 -KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 -k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+-+=- ..|.+|.|.-+|++. ...+..+..+.+..++.+.....-..++...--.|+++|++-+.+.+.+|...+..+
T Consensus 680 ~~mqpP-i~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 680 RSMQPP-ISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccCCc-hhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 11111 358999999999987 778888888888888776543222222233445788888888888888888887665
Q ss_pred hc
Q 038217 545 ST 546 (715)
Q Consensus 545 s~ 546 (715)
+.
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 53
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.67 Score=45.32 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHcCChHHHHHhhcc---------CCHHHHHHHHHHHhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKE-NRAFIAKAGAIPHLRNLLST---------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---------~d~~~~~~A~~aL~nLs 460 (715)
....++..|.+++... +.+..|+...+.++. --..|++.||+..|+.+|.. .+...+..++.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 5667888888766543 566666666655432 34456678999999998863 35678899999999999
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
.+..+...+....+++..|+..|.+. +..++..|+.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 88888777776799999999999987 8999999999998765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.063 Score=55.54 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=36.7
Q ss_pred cCccCccccc--CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 293 CCPIMLDLMR--DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 293 ~CpIc~~lm~--dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.||+|.+.|. |--.. +||...|+.|+...-+.-+..||.||...+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3999999885 33333 688888999988766655779999998777655
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.55 Score=40.95 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
+++++..+.+.+.++|..|+.+|.+++..........+ ..+.+.|..++.+.++.+|..|.-|-++|.
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f---~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF---NEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 78888888889999999999999999987644333222 346888999999999999999988888775
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.26 Score=48.25 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=64.9
Q ss_pred HHHHHHhCChHHHHHhhC-----------ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGALG-----------HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~-----------~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
...|++.||+..|+.+|. +......++..|..|..+..|...++....++..|+..|.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 567888899999999884 226778899999999988999999999888899999999999999999999
Q ss_pred HHHHHHHh
Q 038217 620 AALLELCR 627 (715)
Q Consensus 620 ~~L~~L~~ 627 (715)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999983
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.054 Score=57.20 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=33.4
Q ss_pred CcCccCcccccCce---eC-CCccHhhHHHHHHHHHhC--CCCCCCCcccccc
Q 038217 292 FCCPIMLDLMRDPV---II-STGQTYDRRSIARWMEEG--HRTCPKTGQMLVH 338 (715)
Q Consensus 292 ~~CpIc~~lm~dPv---~~-~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~ 338 (715)
-.|.||-+.+-.-- -+ .|||+|.-.|+++||... +++||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 37999955442211 12 699999999999999863 3689999844443
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.07 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CccCccccc--CceeC--CCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 294 CPIMLDLMR--DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 294 CpIc~~lm~--dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
||+|.+.|. |--.. +||..+|+.|..+-...+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988882 21223 68999999999988876788999999764
|
|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.062 Score=56.70 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCcCccCcccccCceeCCCccHh-hHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTY-DRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtf-cr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|-||+.--+|-++++|.|.. |..|-.... -....||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 56899999999999999999975 999987654 447789999998743
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.8 Score=49.95 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=132.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcC--chhhhhhhhhcCc
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIY--DKNKSRIMDEEGC 475 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~--~~nk~~I~~~~g~ 475 (715)
++.+..+|.++-+.|..++.. +.......+. ..-..|.+-..+.+..++..++.+|..|-.. .++...+. -.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HH
Confidence 355888899999999888864 3333332221 1223344444455666777777777666432 23444444 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcc----CchhHHHHhcccCcHHHHHHHhhcC---C-hhHHHHHHHHHHHhhcC
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSA----VHEYKKKIADESGAVEALATLLRLG---T-PRGKKDAVTALFNLSTH 547 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~~~~~~~I~~~~g~I~~Lv~LL~~~---~-~~~~~~A~~aL~nLs~~ 547 (715)
|+-++-.++.- +...|++|..+|..+.. .++.... . ...|...+.++..+ + +......+.++..+...
T Consensus 740 I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 44444444554 88999999999999873 1111000 0 22455555555443 2 22222224444444432
Q ss_pred CccHHHHHHhCChHH----HHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTA----LVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~----Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
.. .+...+.++. +...|. .++++..|++.+..++. .|+....-....- ++.+..+++.++...+...-.
T Consensus 816 ~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L-L~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 FK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL-LPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred Hh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 22 2223333334 444443 67999999999999876 4655444333334 788888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 038217 621 ALLELCRSGGASATERVLK 639 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~ 639 (715)
.|-.|++..+.+..+.+..
T Consensus 892 LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHhCHHHHHhhCH
Confidence 8888888776555544443
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.058 Score=56.97 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=39.1
Q ss_pred cCccCcccccCceeCCCccHhhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 293 CCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 293 ~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
.|.||-+-=+|=-+=+|||-.|-.|+..|-.. +..+||.|+-.+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 69999998887555599999999999999865 478999999776543
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.069 Score=53.02 Aligned_cols=39 Identities=36% Similarity=0.600 Sum_probs=34.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~ 324 (715)
..+.+.-+|.+|++..+|||+.+-||.|||.||.+++..
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 456667788999999999999999999999999999865
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.095 Score=52.80 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=36.9
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
+++|||+......|++- .|||.|+|..|...+.. -...||.-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 68999999999999987 89999999999998764 235699844
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.092 Score=39.78 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCcCccCcccccCceeC-CCccH--hhHHHHHHHHH-hCCCCCCCCccc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQT--YDRRSIARWME-EGHRTCPKTGQM 335 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~-~~~~~CP~c~~~ 335 (715)
.+.|||+...|.-|+-- .|.|. |+...+..... .+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999966 89986 55544433333 356789999864
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.081 Score=42.79 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=36.7
Q ss_pred CCCCCcCccCcccccC-ceeC-CCccHhhHHHHHHHHHh--CCCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRD-PVII-STGQTYDRRSIARWMEE--GHRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d-Pv~~-~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~ 337 (715)
.|=+-.||-|.-.=.| |.+. -|.|.|-..||.+|+.. ....||.||+...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4445667777655544 4444 79999999999999985 3468999998653
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=7 Score=41.78 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=102.4
Q ss_pred HhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC---chhHHHHhc
Q 038217 439 NLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV---HEYKKKIAD 514 (715)
Q Consensus 439 ~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~I~~ 514 (715)
..|..+....++.|+..+.++....---..+.. ..-.+..+.+.+++| +.+.+..|+.++.-|+.. .+....+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 334445566777777777666433322122221 234577888888888 556666676666655443 234445544
Q ss_pred ccCcHHHHHHHhhcCCh--hHHHHHHHHHHHhhcCC----ccHHHHHHhCChHH--HHHhhC------------ChhHHH
Q 038217 515 ESGAVEALATLLRLGTP--RGKKDAVTALFNLSTHT----DNCVRMIEAGAVTA--LVGALG------------HEGVAE 574 (715)
Q Consensus 515 ~~g~I~~Lv~LL~~~~~--~~~~~A~~aL~nLs~~~----~n~~~iv~aG~v~~--Lv~lL~------------~~~~~~ 574 (715)
...|.|.+.+.+++. ..+..++.+|.-++... +.....++ .+.. ....++ ++.+..
T Consensus 129 --~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 129 --ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred --HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 578889999887653 44445555665554421 12221111 1221 111111 235777
Q ss_pred HHHHHHHHHhCC-cchH-HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 575 EAAGALALIVRQ-PIGA-AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 575 ~al~~L~~La~~-~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.|+..-..|... +... ....+ .. ++.|+.+|.+.+..+|-.|-.+|.-|.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~-~~-~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLE-EA-LPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HH-HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777777666553 4322 22232 34 899999999999999988887775554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.97 E-value=9.2 Score=44.48 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--------CCHHHHHHHHHHHhh--
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--------HNPVAQENSVTAMLN-- 458 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--------~d~~~~~~A~~aL~n-- 458 (715)
+...-.+++...|.+.+.+.-.+..+...|...- .-........+|.+...... ....+.+-++.+-.+
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 4456667777788888888888888888775432 22222333445544433211 112222222222222
Q ss_pred -----------hhcCchhhhhhhhhcCcHHHHHHHHhcC-CCHHHHH-HHHHHHHHhccCchhH-----------HHHhc
Q 038217 459 -----------LSIYDKNKSRIMDEEGCLGSIVKVLRFG-LTTEARE-NAAATLFSLSAVHEYK-----------KKIAD 514 (715)
Q Consensus 459 -----------Ls~~~~nk~~I~~~~g~i~~Lv~lL~~~-~~~e~~~-~Aa~~L~~Ls~~~~~~-----------~~I~~ 514 (715)
+-..++.-..| ..+.+..++..|-.. .+...-+ .--++|..+......- ..++.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm--~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKM--VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHH--HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 21111111122 246677777666442 1111111 1223334443222111 11111
Q ss_pred -----ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHH---HHHhCChHHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 515 -----ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR---MIEAGAVTALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 515 -----~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~---iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
.+..+...+..|++.++.++..|+.++..|+.--.+|.. |...|+ .|.+.|+ .+++.-..+++|..++
T Consensus 792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence 012233455667778889999999988888754444422 333343 2566675 4567666666666664
Q ss_pred CCcchHHHHh-hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 038217 585 RQPIGAAAVG-EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663 (715)
Q Consensus 585 ~~~e~~~~i~-~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~ 663 (715)
..- |-..+. -..+.+|.|.-+|++...+++++++..+..+|.++++.+-..=+. -+-=-|++++++.....++.|.
T Consensus 870 nvi-gm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 870 NVI-GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred Hhc-cccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 321 111111 122348999999999999999999999999999886532211111 1234478888888889999988
Q ss_pred HHHHHHHH
Q 038217 664 SLARVFQR 671 (715)
Q Consensus 664 ~lL~~l~~ 671 (715)
..+-.+.+
T Consensus 947 nTfG~Iak 954 (1172)
T KOG0213|consen 947 NTFGYIAK 954 (1172)
T ss_pred hhhhHHHH
Confidence 77776665
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.1 Score=49.98 Aligned_cols=189 Identities=16% Similarity=0.102 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH--HhhcCCccHHH
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF--NLSTHTDNCVR 553 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~--nLs~~~~n~~~ 553 (715)
+|.++++|-+. --|..|+.+|...-....-...+.-.-|.+|-.++||++...+. +-.+..+| -|+.++.....
T Consensus 474 LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~EL-rpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAREL-RPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhh-hhhHHHHHHHHHhcCchhHHH
Confidence 44445555432 22444555554443333323333222699999999998765444 44555555 46777777888
Q ss_pred HHHhCChHHHHHhhCC-----hhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHHH
Q 038217 554 MIEAGAVTALVGALGH-----EGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLELC 626 (715)
Q Consensus 554 iv~aG~v~~Lv~lL~~-----~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~L~~L~ 626 (715)
+++.++-.-.++.|.+ ++-+.-|+-+|+.++.+ +-|..+..+.+- |..-.+.|.++ .+-.+..++-+|..|-
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l-i~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL-IGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH-HHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888776677777753 35667788889999885 669999998776 88888888876 4888999999999988
Q ss_pred hcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 627 RSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 627 ~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.+..+ .+ -.....++.+.|+.++.+..++++..|.-.|..|-.
T Consensus 629 ~d~~~-Ar-w~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 629 EDYDE-AR-WSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hhcch-hh-hccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 87633 22 223336789999999999999999999977766544
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=91.81 E-value=4.2 Score=43.85 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-HHHH--cCChHHHHH-hhc-cCCHHHHHHHHHHHhhhhcCc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA-FIAK--AGAIPHLRN-LLS-THNPVAQENSVTAMLNLSIYD 463 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~-~i~~--~G~i~~Lv~-lL~-s~d~~~~~~A~~aL~nLs~~~ 463 (715)
.+.+..|+..|...+.+.+..++....++.+.....+. ..++ ..--|-++. ++. .+++++--.+-..|..+..++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 45778888999999999999999999888887655543 1111 112133333 332 256777778888899999888
Q ss_pred hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh-ccCchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL-SAVHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.-...|. ....+..+....+.+ +-++-..|..++..| ..+......... -...+.....||.+++-=++..++..
T Consensus 155 ~l~~~iL-~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 155 SLAKIIL-YSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHH-TSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHh-CcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 7767777 677888899999888 999999999999986 444443333222 12466778888999999999999999
Q ss_pred HHHhhcCCccHHHHHHh----CChHHHHHhhCC--hhHHHHHHHHHHHHhCCcch---HHHHhhhCCcHHHHHHHhhc
Q 038217 541 LFNLSTHTDNCVRMIEA----GAVTALVGALGH--EGVAEEAAGALALIVRQPIG---AAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 541 L~nLs~~~~n~~~iv~a----G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~---~~~i~~~g~~I~~Lv~lL~~ 609 (715)
|..|-.++.|-.-|... ..+..++.+|+| ..++-+|..++...+.+|.- -..|+..+- ..|++.+..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~fl~~ 308 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLRFLKD 308 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHHHHHT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHHHHHh
Confidence 99999999987766544 557788888874 58999999999988765432 223333343 455555554
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=91.78 E-value=12 Score=39.96 Aligned_cols=187 Identities=18% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC---CccHHH
Q 038217 478 SIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLSTH---TDNCVR 553 (715)
Q Consensus 478 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~---~~n~~~ 553 (715)
..+..+... +...|+.++..|..+-........+.. ..-.+..+.+.++.|..+-+..|+.++.-|+.. .+....
T Consensus 47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 334444443 678899999888877654433333322 124577888888888776667777777777654 234445
Q ss_pred HHHhCChHHHHHhhCCh----hHHHHHHHHHHHHhC---C-cchHHHHhhhCCcHHHHH--HHhhc-C---------ChH
Q 038217 554 MIEAGAVTALVGALGHE----GVAEEAAGALALIVR---Q-PIGAAAVGEEEMAVTGLV--GMMRC-G---------TPR 613 (715)
Q Consensus 554 iv~aG~v~~Lv~lL~~~----~~~~~al~~L~~La~---~-~e~~~~i~~~g~~I~~Lv--~lL~~-~---------s~~ 613 (715)
+.+ ...|.|...+.|. .++..++.+|..++. . .+......+ . +..+. ..++. | ++.
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~-le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--S-LESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--H-HHHHHHHHhcCcCCCcccccCCCccH
Confidence 444 3678888888632 344455555555433 2 222221111 1 22111 11222 1 234
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
..-.|+.+-.-|...-+......... ..++.|..++.+.+..++..|...+-++-+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56666655444444433322334333 349999999999999999999887777754
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.075 Score=40.52 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
+..|-.|...-...++++|||..|+.|..-+- -..||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCcccCCC
Confidence 55677888888888999999999999876542 457999999886543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.53 E-value=6.7 Score=41.63 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=109.8
Q ss_pred CChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-
Q 038217 432 GAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK- 509 (715)
Q Consensus 432 G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~- 509 (715)
+.+..|+ +-+.+.++.+++.|+.+|...+..+. .+. ...++.+...++.+ +.+++..|+.+++.+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a--~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA--KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 4555554 67788999999999999999988775 222 33467788888777 9999999999999886532211
Q ss_pred --HH------HhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHh-hC-----ChhHHHH
Q 038217 510 --KK------IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGA-LG-----HEGVAEE 575 (715)
Q Consensus 510 --~~------I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~l-L~-----~~~~~~~ 575 (715)
.. ... ...+..+.+.+.+.+++.+..|+..++.|-....... ...++..|+-+ +. +..++.-
T Consensus 100 ~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 112 4567778888888888999999999999876554332 12233333333 22 2344444
Q ss_pred HHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhc
Q 038217 576 AAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 576 al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
-...+-..|......+..+.... ++.+-.+...
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~~~f-~~~l~~~~~~ 208 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLAEAF-LPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHhC
Confidence 44445566665554455555555 7887777665
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.9 Score=46.68 Aligned_cols=230 Identities=16% Similarity=0.138 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHH-HHH---HHhhhhcCc
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN-SVT---AMLNLSIYD 463 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~-A~~---aL~nLs~~~ 463 (715)
.+..+..+++.|...+.++|.-|+++|.-+++.-++.+.. -.+..|+.-+-++....+.- +++ .+.|+.-
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-- 118 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-- 118 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--
Confidence 3457889999999999999999999999888554333321 12333433222222222221 222 2233332
Q ss_pred hhhhhhhhhcCcHHHHHHHHhc-----CCCHHHHHHHHHHHHHh-ccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHH
Q 038217 464 KNKSRIMDEEGCLGSIVKVLRF-----GLTTEARENAAATLFSL-SAVHEYKKKIADESGAVEALATLLRLGTPRGKKDA 537 (715)
Q Consensus 464 ~nk~~I~~~~g~i~~Lv~lL~~-----~~~~e~~~~Aa~~L~~L-s~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A 537 (715)
.-.... ...+++.+...|.. +....++-.++.++... +...+.-... ..+....++.-+......++|.|
T Consensus 119 -~~~~~l-a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f--h~~il~~l~~ql~s~R~aVrKka 194 (1233)
T KOG1824|consen 119 -SSSSFL-AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF--HLSILKCLLPQLQSPRLAVRKKA 194 (1233)
T ss_pred -cccccc-ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch--HHHHHHHHhhcccChHHHHHHHH
Confidence 112222 34445555555543 21223455555555433 2221111111 12333444444444446789999
Q ss_pred HHHHHHhhcCCccHHHHHHhCChHHHHHhhCC---hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh---hcCC
Q 038217 538 VTALFNLSTHTDNCVRMIEAGAVTALVGALGH---EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM---RCGT 611 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~---~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL---~~~s 611 (715)
+.+|..|+.... ..+-.+++..|++=|++ ......-..+|..++.....|.-- -.+..+|.+.++. ....
T Consensus 195 i~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~d 270 (1233)
T KOG1824|consen 195 ITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS-HLDKIVPLVADYCNKIEEDD 270 (1233)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc-ccchhhHHHHHHhcccccCc
Confidence 999999987432 22233556777777752 233344445555555433222211 1222367777777 5578
Q ss_pred hHHHHHHHHHHHHHHhcCCH
Q 038217 612 PRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 612 ~~~ke~A~~~L~~L~~~~~~ 631 (715)
++.||.++.+|-.+-...+.
T Consensus 271 DELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 271 DELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHHHHHhChh
Confidence 89999999998888776643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.59 Score=54.52 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=37.3
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCcc
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQ 334 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~ 334 (715)
.+-+.-.|..|...+.-|++. .|||.|.+.|.+ .+...||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 344456999999999999977 999999999998 45789999975
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=90.96 E-value=26 Score=37.84 Aligned_cols=219 Identities=12% Similarity=0.023 Sum_probs=150.9
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh-----hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 427 FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS-----RIMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 427 ~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~-----~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
.+...|.+..|+..|..-+.+++..++.+..++.... +++. -+. ...-+.|..++..-.+++.--.+-..|+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~--~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE--RHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH--T--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH--hCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 3556789999999999999999999999999986654 3332 222 1112222233333225577788889999
Q ss_pred HhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC---hHHHHHhhCCh--hHHH
Q 038217 501 SLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA---VTALVGALGHE--GVAE 574 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~---v~~Lv~lL~~~--~~~~ 574 (715)
....++.....|.. ...+..+.+.+..++=++.-+|..++..|-. +......+...+. +.....+|.++ -.+.
T Consensus 149 ec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 99999888888888 8899999999988888999999999988654 4555566666543 55666677533 6678
Q ss_pred HHHHHHHHHhCCcchHHHHh---hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHhcCCcHHHHHH
Q 038217 575 EAAGALALIVRQPIGAAAVG---EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG--GASATERVLKAPALVGLLQA 649 (715)
Q Consensus 575 ~al~~L~~La~~~e~~~~i~---~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~~ 649 (715)
.++..|..|-.++.+...+. ....-+..++.+|++.|..+|-.|-.+..-+..+. ++.+...+.. . =+.|+.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~kLl~ 304 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REKLLR 304 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHHHHH
Confidence 89999999988877766553 33333788888999999999999999998888775 3345555555 3 344444
Q ss_pred Hh
Q 038217 650 LL 651 (715)
Q Consensus 650 Ll 651 (715)
.+
T Consensus 305 fl 306 (335)
T PF08569_consen 305 FL 306 (335)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.07 Score=62.49 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=40.1
Q ss_pred CcCccCcccccCceeCCCccHhhHHHHHHHHHhCC-CCCCCCccccccCC
Q 038217 292 FCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH-RTCPKTGQMLVHDR 340 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~-~~CP~c~~~l~~~~ 340 (715)
+.|++|.+ ..+|+++.|||.||+.|+...+.... ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88888889999999999999988643 35999987665443
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.88 E-value=3.8 Score=47.95 Aligned_cols=203 Identities=11% Similarity=0.114 Sum_probs=133.0
Q ss_pred hcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hccCchhHHHHhcccCcHHHHHHHhhcCCh-hHHHHH
Q 038217 460 SIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS-LSAVHEYKKKIADESGAVEALATLLRLGTP-RGKKDA 537 (715)
Q Consensus 460 s~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A 537 (715)
+.....+...+ ..|+.+.|..+...+ ..+++..+..+|.. ++-. ..+. ...++.+...+..... -..-.+
T Consensus 491 A~~K~~~~~~I-k~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~-~~~~-----~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKI-KPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFP-GERS-----YEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccc-cccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCC-CCch-----hhhhhhhcchhhhhHHHHHHHHH
Confidence 33444466777 899999999999887 88898888888872 1110 0000 2456666666543321 234578
Q ss_pred HHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHH-HHhhhCCcHHHHHHHhhcCChH
Q 038217 538 VTALFNLSTHTD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAA-AVGEEEMAVTGLVGMMRCGTPR 613 (715)
Q Consensus 538 ~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~-~i~~~g~~I~~Lv~lL~~~s~~ 613 (715)
+.+|.||++..+ .|.++++.-+++.+-.++. ++..+..++..+.||..++...+ .+++....++.....+..-..+
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 999999998554 7888888766666555553 56888999999999988777444 4555333367777777665666
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHH-HHHHHHHHHHH
Q 038217 614 GKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR-KAASLARVFQR 671 (715)
Q Consensus 614 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~-~A~~lL~~l~~ 671 (715)
..-.+++++..+.... +..+............++.++.++.+.++. .....++++..
T Consensus 643 ~~lA~a~a~a~I~sv~-~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 643 FELAGAGALAAITSVV-ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred Hhhhccccccchhhcc-hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 6777777777666665 333332333245678888888888888764 33445554443
|
|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.12 Score=54.74 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.+.|....|-||.+-..+.+.++|||+.| |+.-.-. .+.||.|++.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 45666779999999999999999999987 6654322 566999998653
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.73 E-value=35 Score=38.87 Aligned_cols=277 Identities=10% Similarity=0.075 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCCh-HHHH-Hhhcc-CCHHHHHHHHHHHhh-hhcCch
Q 038217 390 ATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAI-PHLR-NLLST-HNPVAQENSVTAMLN-LSIYDK 464 (715)
Q Consensus 390 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i-~~Lv-~lL~s-~d~~~~~~A~~aL~n-Ls~~~~ 464 (715)
+....++.....+ ....++.++..+.+.+.. ..-...+...+.| -.++ .-++. ++..++-.|+.+|.+ |-...+
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666544 455678899999998853 3333444444443 2333 34444 577889999999988 433222
Q ss_pred hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
|-..=-...-.+...++.-+.. +.+++..|..+|..+-..- ..-..+.+ .-....+.+.+++.++++...|+..-..
T Consensus 212 nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred hhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 2111110122334445555555 8899999999888775422 22223333 2223333455677788888777776544
Q ss_pred hhcCC---------------ccHHHH--HHhCChHHHHHhhC----C----h-hHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 544 LSTHT---------------DNCVRM--IEAGAVTALVGALG----H----E-GVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 544 Ls~~~---------------~n~~~i--v~aG~v~~Lv~lL~----~----~-~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
+|... .|.... .-+.++|.|+.+|. | . .....|...|...+.... ..|.+ +
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~-p 366 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMR-P 366 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHH-H
Confidence 44321 122222 23357999999993 1 1 444555555555542111 22222 1
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
. +.-+-.-+++.+-..+|.|+-++..+-.+..+.+...++ ...+|.+..+..+..--+|..+++.+-.+.++-..
T Consensus 367 V-l~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 367 V-LGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred H-HHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 2 333333566678888999999999988766444444444 34588899988877778899999999888887655
|
|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.22 Score=42.80 Aligned_cols=27 Identities=19% Similarity=0.610 Sum_probs=24.6
Q ss_pred CCccHhhHHHHHHHHHhCCCCCCCCccc
Q 038217 308 STGQTYDRRSIARWMEEGHRTCPKTGQM 335 (715)
Q Consensus 308 ~cghtfcr~cI~~w~~~~~~~CP~c~~~ 335 (715)
.|.|.|-..||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 79999999999999998 7889999764
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=90.64 E-value=7.7 Score=42.44 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=129.4
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHH-HHHHhhhhcCchhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENS-VTAMLNLSIYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A-~~aL~nLs~~~~nk 466 (715)
+.|..++..|. +.+...|+.++-.|...+. +++.|..+...|.+..+++.+.. ++..+.-.+ +.+++-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 46788888887 4566788899999998886 58999999999999999998844 443243334 44444455555555
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc---------CChhHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL---------GTPRGKKDA 537 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~---------~~~~~~~~A 537 (715)
..+. ..+.+..++.++............. .....+-.++.+ +.+..+..++.. .....+..|
T Consensus 100 ~l~~-~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 100 HLLL-DRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhhh-chhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH--HHHHHHHHHHhccccccccCCcccccccHH
Confidence 5544 6677777788887110000000000 000000011110 111112222210 011223344
Q ss_pred HHHHHHhh--------------c-CCccHHHHHHhCChHHHHHhhCC------------------hhHHHHHHHHHHHHh
Q 038217 538 VTALFNLS--------------T-HTDNCVRMIEAGAVTALVGALGH------------------EGVAEEAAGALALIV 584 (715)
Q Consensus 538 ~~aL~nLs--------------~-~~~n~~~iv~aG~v~~Lv~lL~~------------------~~~~~~al~~L~~La 584 (715)
+.+|..++ . .+-.|..+.+.|++..++..+.+ -.....++.+|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 44544442 0 11246777888999998888630 034677999999876
Q ss_pred C-CcchHHHHhhhCC-cHHHHHH-HhhcC---ChHHHHHHHHHHHHHHhcCC
Q 038217 585 R-QPIGAAAVGEEEM-AVTGLVG-MMRCG---TPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 585 ~-~~e~~~~i~~~g~-~I~~Lv~-lL~~~---s~~~ke~A~~~L~~L~~~~~ 630 (715)
. +.++...+..... .++.+.. ++..- .......++.++.|+..+++
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 5 3556666654422 1333333 33322 23335788899999998874
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=32 Score=38.31 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=137.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC---hhhHHHHHHcCChHHHHHhhccC-------CHHHHHHHHHHHhhhhcCch
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTG---KENRAFIAKAGAIPHLRNLLSTH-------NPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~---~~~r~~i~~~G~i~~Lv~lL~s~-------d~~~~~~A~~aL~nLs~~~~ 464 (715)
+...+..-+.++|..|+--+.+++|.+ ..+|..+.++=|.+.+=++|.++ |.-.+.-++++|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 334455556777888988888888875 36788899998899999999763 23345566777777777765
Q ss_pred h--hhhhhhhcCcHHHHHHHHhcCCCHH------HHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHH
Q 038217 465 N--KSRIMDEEGCLGSIVKVLRFGLTTE------ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKK 535 (715)
Q Consensus 465 n--k~~I~~~~g~i~~Lv~lL~~~~~~e------~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~ 535 (715)
- .+.|+ +.||.|..++..+.+.+ ..+.+-..|...+..+.....+.+ .|+++.+.++-.-.+ .....
T Consensus 96 lAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 96 LASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHH
Confidence 3 55666 67999999998764544 667888999999999888888888 899999998743222 12223
Q ss_pred HHHHHHHHhh----cCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-------cchHHHHhhhCCcHHH
Q 038217 536 DAVTALFNLS----THTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-------PIGAAAVGEEEMAVTG 602 (715)
Q Consensus 536 ~A~~aL~nLs----~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-------~e~~~~i~~~g~~I~~ 602 (715)
.|+..+.-+. ..++....+... |..+..=+. +...+-+.+.+|..+-.. +.-+..+....- -.-
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l-~~G 248 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYL-RTG 248 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHH-HHH
Confidence 3333332222 223344443322 222222221 446667777777743221 111211111111 233
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHHh
Q 038217 603 LVGMMRC-GTPRGKENAVAALLELCR 627 (715)
Q Consensus 603 Lv~lL~~-~s~~~ke~A~~~L~~L~~ 627 (715)
++.+|++ -++..|..|+....++..
T Consensus 249 ~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 249 VVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHhcccCchhcChHHHHHHHHHH
Confidence 4555655 356666666655544443
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.5 Score=43.62 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhh-cCchhhhhhhhhcCcHHHHHHHHh
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLS-IYDKNKSRIMDEEGCLGSIVKVLR 484 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs-~~~~nk~~I~~~~g~i~~Lv~lL~ 484 (715)
...|+..|+-++--++..|..+.....+..|+.+|. +..+.++..++.+|..+- .++.|...+- +.+++..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE-~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFE-ELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHH-HhCCHHHHHHHHc
Confidence 456888898888888999999999999999999995 467899999999997765 4568888887 9999999999998
Q ss_pred cC-CCHHHHHHHHHHHH-Hhcc
Q 038217 485 FG-LTTEARENAAATLF-SLSA 504 (715)
Q Consensus 485 ~~-~~~e~~~~Aa~~L~-~Ls~ 504 (715)
+. .+.+++-.....|. +|..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 74 24567766666664 4443
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.16 Score=50.76 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCCCcCccCcccccCcee----CCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC
Q 038217 289 PKDFCCPIMLDLMRDPVI----ISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV 342 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~----~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~ 342 (715)
...|.|||++-.|.+-.. .+|||.|-...+.+.- ...|++|+.....++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 458999999999987653 3999999888777643 56999999999888744
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.8 Score=37.71 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG 486 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~ 486 (715)
|..++..|...+..-... ..-.-.-.+|+++..+.+.|..++..|+.+|.|++..-...-.-. -...++.|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 344555555555433222 111123578999999999999999999999999987654322111 356777777777665
Q ss_pred CCHHHHHHHHHHHHHh
Q 038217 487 LTTEARENAAATLFSL 502 (715)
Q Consensus 487 ~~~e~~~~Aa~~L~~L 502 (715)
+..++ +++..|-.|
T Consensus 81 -d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 81 -DENVR-SAAELLDRL 94 (97)
T ss_pred -chhHH-HHHHHHHHH
Confidence 55554 445555544
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.14 Score=57.35 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=33.4
Q ss_pred CCCCCCcCccCccccc----CceeCCCccHhhHHHHHHHHHhCCCCCC
Q 038217 287 SIPKDFCCPIMLDLMR----DPVIISTGQTYDRRSIARWMEEGHRTCP 330 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~----dPv~~~cghtfcr~cI~~w~~~~~~~CP 330 (715)
...+-+.|+||...|. .||.+-||||.|+.|.+.-+.. +||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 3445679999976663 7999999999999999988754 788
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.97 E-value=12 Score=43.94 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=138.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDE 472 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~ 472 (715)
..|+.+|.|.....++.|+..|-.+...+.+ -....|..|+...+.+.+++.-.---|...+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 5788999999888899999988776655443 2346788999999999999885555555555544433222
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccH
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNC 551 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~ 551 (715)
-|..+=+-|+.. +..+|..|+.+|..+ |.-+.. +=.+-++-+...+.++-+++.|+.||-.|-+ .++.+
T Consensus 109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 255666677777 888887777766554 333333 2223333444555678999999999998865 45555
Q ss_pred HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 552 VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
.++++ .+=.+|. ++.+.-.|+.+...+| |+.-..|- +. -..|+.++-....-+|-..+..|..-|+.
T Consensus 179 ~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIH--kn-yrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 179 DQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH--KN-YRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred HHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh--HH-HHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 54433 3444555 4578888888888876 45444442 33 57888888777777787777777766653
|
|
| >COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.13 Score=50.84 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCcCccCcc-cccCce--eC--C-CccHhhHHHHHHHHHhCCCCCC--CCccccc
Q 038217 291 DFCCPIMLD-LMRDPV--II--S-TGQTYDRRSIARWMEEGHRTCP--KTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~-lm~dPv--~~--~-cghtfcr~cI~~w~~~~~~~CP--~c~~~l~ 337 (715)
+-.||+|.. .+-.|- ++ | |-|..|-+|..+.|..|...|| -|++-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 568999984 334443 22 4 9999999999999999999999 4765543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.91 E-value=6.8 Score=45.75 Aligned_cols=246 Identities=18% Similarity=0.139 Sum_probs=150.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
..+.++....+.+.+.++-+--.+.+-++..|+. ..+++..+++=-.+.++.++..|++.+..+-... +.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ 119 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----IT 119 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HH
Confidence 4566677777777776666666677777666543 2356677777667788999998888777665332 22
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.....+|...++.+ ++.+|..|+..+..+-.. +. .++...|.++.|-.++.+.++.+..+|+.+|..+...+.+
T Consensus 120 --ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~--~~-~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 120 --EYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDI--DP-DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcC--Ch-hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 44677888888887 888888887777766432 23 3444489999999999988899999999999999765432
Q ss_pred -HHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCC-c-chHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 551 -CVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQ-P-IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 551 -~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~-~-e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
-..-+..-.+..++..+. +-....-+.+|-.++.. + +.+.+. ..+..+...+.+.++...-.++.++.++..
T Consensus 194 ~~~~~l~~~~~~~lL~al~-ec~EW~qi~IL~~l~~y~p~d~~ea~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALN-ECTEWGQIFILDCLAEYVPKDSREAE----DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCcccccHHHHHHHHHHHH-HhhhhhHHHHHHHHHhcCCCCchhHH----HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 111111122333444442 11112234444455442 1 112211 114455556666667777777777777766
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 038217 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRK 661 (715)
Q Consensus 628 ~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~ 661 (715)
.-.. +...+.+ .+-++|+.++.+.. ..+-.
T Consensus 269 ~~~~-~~~~~~~--K~~~pl~tlls~~~-e~qyv 298 (734)
T KOG1061|consen 269 YLKQ-VNELLFK--KVAPPLVTLLSSES-EIQYV 298 (734)
T ss_pred HHHH-HHHHHHH--Hhcccceeeecccc-hhhHH
Confidence 5422 3333332 34667777776665 44333
|
|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.38 Score=43.54 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCCcCccCcccccCceeC----CCccHhhHHHHHHHHHh--CCCCCCCCccccccC
Q 038217 290 KDFCCPIMLDLMRDPVII----STGQTYDRRSIARWMEE--GHRTCPKTGQMLVHD 339 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~----~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~ 339 (715)
.-+.|-||.+.-.|+-.+ .||...|..|.-..|+. -++.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999999998877 69999999999999985 468999998877654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=89.08 E-value=14 Score=36.00 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH-HHHHH
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL-GSIVK 481 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i-~~Lv~ 481 (715)
++..|..++-.+..++...+.. + ...+|.+...|.++++.++..|+.+|..|...+--| -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHH
Confidence 3677889999999999765432 2 246889999999999999999999999997543211 22333 67777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccC
Q 038217 482 VLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
.+... +++++..|...+..++..
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 77776 899999999999999775
|
|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.32 Score=51.63 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCcCccCccccc------CceeCCCccHhhHHHHHHHHHhCCCCCCCCcccc--cc---CCCCccHHHHHHHHHH
Q 038217 291 DFCCPIMLDLMR------DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML--VH---DRLVPNRALRNLIVQW 354 (715)
Q Consensus 291 ~~~CpIc~~lm~------dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l--~~---~~l~pn~~l~~~i~~~ 354 (715)
.+.|-||.+.+. -|-.+.|||++|..|+.+.+..+.-.||.|+.+. .. ..+..|..+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 346777777664 4677789999999999998888788899999884 22 2367778777777665
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=88.91 E-value=24 Score=37.45 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred HHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc--hhhh
Q 038217 391 TAELLI-QQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD--KNKS 467 (715)
Q Consensus 391 ~i~~Lv-~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~--~nk~ 467 (715)
.+..|| ..+++.+...|..|+..|...+--+.+. +. ..++.+...+..++..++..|+.++..+.... ..-.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 454554 6778999999999999999988655422 21 23667777777789999999999998885422 1111
Q ss_pred -------hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc----CChhHHHH
Q 038217 468 -------RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL----GTPRGKKD 536 (715)
Q Consensus 468 -------~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~----~~~~~~~~ 536 (715)
... ....+..+.+.|.+. +.+++..|+..+..|-..+.... .+..+..|+-+-.+ ++.+.+..
T Consensus 102 ~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 102 SESDNDESVD-SKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred chhccCccch-HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 122 356788888888888 88999999999988865544332 13445555555433 23445554
Q ss_pred HHHHHHHhhcCCccHHHHHHhCChHHHHHhhC
Q 038217 537 AVTALFNLSTHTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 537 A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
-...+-..+......+..+..+.++.+-.+..
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 44555566766665556666667888777764
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.90 E-value=9.5 Score=45.23 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.-.+..+...+.+.++..|.-|++.+..+=.. + + -..+++++.+++.++++.++..|+-++.++-..+ +..
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~--e----l-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l 161 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--E----L-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDL 161 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--H----H-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhh
Confidence 34455566666666777776666655443211 1 1 1245788999999999999999999999885443 356
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
.. +.|.+..+..++... ++.+..+|..+|..+-.
T Consensus 162 ~~-~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 162 YH-ELGLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred hh-cccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 66 888999998888887 99999999999998854
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.3 Score=44.78 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhhcCchhhhhhhhhcCc-------HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh-HHHHhcccCc
Q 038217 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGC-------LGSIVKVLRFGLTTEARENAAATLFSLSAVHEY-KKKIADESGA 518 (715)
Q Consensus 447 ~~~~~A~~aL~nLs~~~~nk~~I~~~~g~-------i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~I~~~~g~ 518 (715)
.-|..|+.+|++|+..+.|-..|. ..+- +..|+.+|....+.-.|+-|..+|.+|+..++. ...|+...++
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 568999999999999999988887 5443 333444444444788999999999999988774 4466666899
Q ss_pred HHHHHHHhhcC
Q 038217 519 VEALATLLRLG 529 (715)
Q Consensus 519 I~~Lv~LL~~~ 529 (715)
|..|+..+...
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999653
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.13 E-value=7.9 Score=43.54 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=105.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh------hHHHHHHHHHHHHhCCcchHH
Q 038217 518 AVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE------GVAEEAAGALALIVRQPIGAA 591 (715)
Q Consensus 518 ~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~------~~~~~al~~L~~La~~~e~~~ 591 (715)
....+.+++.+++...+..|+.-|..|+.+......++...++..|..++.|+ .+...++.++..|-.+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 34567778889999888889999999999999999999999999999999643 455566666666644322111
Q ss_pred HHhhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 592 AVGEEEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 592 ~i~~~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
..+.... |...+.++.- -...+-..|+..|-++..++. .....+.+ .--+..|...++.++.+.+.+|-++++.+
T Consensus 164 ~~~~~~f-V~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~-~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDF-VVSMASYVNAKREDANTLLAALQMLESLVLGSD-TLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHH-HHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh-HHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1112222 4444444422 234456788899988888763 23334444 66788999999999999999999888766
Q ss_pred H
Q 038217 670 Q 670 (715)
Q Consensus 670 ~ 670 (715)
-
T Consensus 241 ~ 241 (713)
T KOG2999|consen 241 F 241 (713)
T ss_pred H
Confidence 4
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.4 Score=36.16 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-Ch--hHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-HE--GVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-~~--~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
-.|.|++++.|+++.+.....+-+.++|+.++++.. .+ .++--|..+|..++++.+|.+.+.+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 368899999999998888888888899999999985 33 788889999999999999998887654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=87.88 E-value=13 Score=36.26 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCCh-HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAI-PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i-~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++.+...|++.++.+|..|+..|..|...+. +--.|-+ ..++.+|.++|++++..|...+..++.... ...+
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i 99 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRN-PNII 99 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-chHH
Confidence 56788899999999999999999999986541 1112444 778888899999999999999999887631 2222
Q ss_pred hhhcCcHHHHHHHHhcC--------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc----CChhHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFG--------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL----GTPRGKKDA 537 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~--------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~----~~~~~~~~A 537 (715)
. ..++.++..|... .+.+.+......|...-..+..+..+.. .|..-+.. .++...+++
T Consensus 100 ~---~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~------kl~~~~~~~~~~~~~~~~~d~ 170 (178)
T PF12717_consen 100 Y---NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE------KLCQRFLNAVVDEDERVLRDI 170 (178)
T ss_pred H---HHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH------HHHHHHHHHcccccHHHHHHH
Confidence 2 3344455555432 2445566666666555444444444433 33333222 245566666
Q ss_pred HHHHH
Q 038217 538 VTALF 542 (715)
Q Consensus 538 ~~aL~ 542 (715)
+.+|.
T Consensus 171 ~~~l~ 175 (178)
T PF12717_consen 171 LYCLS 175 (178)
T ss_pred HHHHH
Confidence 66554
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=8.9 Score=38.35 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=120.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHH-------hhcc-----CCHHHHHHHHHHHhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRN-------LLST-----HNPVAQENSVTAMLNL 459 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~-------lL~s-----~d~~~~~~A~~aL~nL 459 (715)
-..+..+-.+++.+| |+.+|..--+..++....+-.. |....|++ +|+. ....-..+|+..|.-+
T Consensus 50 y~wicqlv~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQcl 127 (315)
T COG5209 50 YSWICQLVVGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCL 127 (315)
T ss_pred HHHHHHHhcCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHH
Confidence 344455667777665 8888877777777766666655 44444443 2222 1123456777788888
Q ss_pred hcCchhhhhhhhhcCcHHHHHHHH---hcCCC-HHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHH
Q 038217 460 SIYDKNKSRIMDEEGCLGSIVKVL---RFGLT-TEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGK 534 (715)
Q Consensus 460 s~~~~nk~~I~~~~g~i~~Lv~lL---~~~~~-~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~ 534 (715)
+.+++.|..++ ++-.---+-.+| .+... +-.|..+++++..|..+++ +-....-....||.+++++..|++-.+
T Consensus 128 aShPetk~~Fl-~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSk 206 (315)
T COG5209 128 ASHPETKKVFL-DAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSK 206 (315)
T ss_pred hcCcchheeee-ecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Confidence 99999999988 554332333333 33212 3468889999999988775 333333337899999999998887777
Q ss_pred HHHHHHHHHhhcCCccHHHHH----HhCChHH----HHHhh-C--ChhHHHHHHHHHHHHhCCcchHHHH
Q 038217 535 KDAVTALFNLSTHTDNCVRMI----EAGAVTA----LVGAL-G--HEGVAEEAAGALALIVRQPIGAAAV 593 (715)
Q Consensus 535 ~~A~~aL~nLs~~~~n~~~iv----~aG~v~~----Lv~lL-~--~~~~~~~al~~L~~La~~~e~~~~i 593 (715)
.-|+.++..+-.++..-..+. +.-+|.. ++.-+ + ...+...++.+-..|+..++.|..+
T Consensus 207 tvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 207 TVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 777777666655555433332 2222222 22222 1 3356666777766777666666654
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.4 Score=42.30 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLGS 478 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~~ 478 (715)
-.+.|+.-|+-++. .|+.|..+.++.+--.|-++|.. +...++..++.++..|..+++. -..+. ...++|.
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence 35778888888885 58999999988765556666643 2345778889999999877643 34444 7889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccC---cHH----HHHH-HhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESG---AVE----ALAT-LLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g---~I~----~Lv~-LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.++++..| ++-.+..|+-++..+-.+|..-..|++.-. +|. .++. +...++.+..|.++++-..||..+..
T Consensus 194 cLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 194 CLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhH
Confidence 99999998 777777777777777777765555554222 222 2221 22336678888888888888877766
Q ss_pred HHHH
Q 038217 551 CVRM 554 (715)
Q Consensus 551 ~~~i 554 (715)
|..+
T Consensus 273 R~lL 276 (315)
T COG5209 273 RALL 276 (315)
T ss_pred HHHH
Confidence 5443
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=86.97 E-value=26 Score=38.57 Aligned_cols=83 Identities=7% Similarity=0.159 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-c---CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHH
Q 038217 403 SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-T---HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478 (715)
Q Consensus 403 ~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s---~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~ 478 (715)
....-..|+..+..+....|..-..+.++|.++.++.-+. . .+.++...--.+|..+|.++.+.+.+. +.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~-~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVK-SSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHH-hcChHHH
Confidence 3455677888899999888999999999999999998877 3 457777777888899999999999999 8999999
Q ss_pred HHHHHhcC
Q 038217 479 IVKVLRFG 486 (715)
Q Consensus 479 Lv~lL~~~ 486 (715)
+++++.+.
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99999764
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.6 Score=42.65 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCcchHHHHhhhCC------cHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcH
Q 038217 572 VAEEAAGALALIVRQPIGAAAVGEEEM------AVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALV 644 (715)
Q Consensus 572 ~~~~al~~L~~La~~~e~~~~i~~~g~------~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i 644 (715)
-+..|+.+|+.|+-.+.|...|+.++. ++..|++++.. +++-.||-|+.+|.+||..+ +..+..+....+.+
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~-~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD-EAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc-HHHHHHHHHhhchH
Confidence 356777777777776667766666665 13344554443 57888999999999999887 44444555557899
Q ss_pred HHHHHHhhcCCHHHHHH
Q 038217 645 GLLQALLFTGTKRARRK 661 (715)
Q Consensus 645 ~~L~~Ll~s~~~~~k~~ 661 (715)
..|+.++.++...+...
T Consensus 219 ~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998775544443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=86.12 E-value=88 Score=37.88 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc----cCC----HHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS----THN----PVAQENSVTA 455 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~----s~d----~~~~~~A~~a 455 (715)
.+++..++..|.+ +..+.....+.-|+..++- +.||..+.+.|+++.|+..|. .+. ..+-+.-+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4566777777753 2333444455555556654 899999999999999998774 333 5666666666
Q ss_pred HhhhhcCchh------hhhhhhhcC----c---HHHHHHHHhcC---CCHHHHHHHHHHHHHhccCchhHHHHhcccCcH
Q 038217 456 MLNLSIYDKN------KSRIMDEEG----C---LGSIVKVLRFG---LTTEARENAAATLFSLSAVHEYKKKIADESGAV 519 (715)
Q Consensus 456 L~nLs~~~~n------k~~I~~~~g----~---i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I 519 (715)
+-.|...... ..... ..| . +..+++.+.+. .+..+....+.+|=+|+..++.+..... .-+
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~-~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F 271 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSS-LSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHF 271 (802)
T ss_pred HHHHHHHHhhhhhhhcccccc-ccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHH
Confidence 6555322211 11111 121 3 55555555442 2567788889999999887765554432 223
Q ss_pred HHHHHHhhcC--ChhHHHHHHHHHHHhhcC----C---ccHHHHHHhCChHHHHHhhC----------ChhH--------
Q 038217 520 EALATLLRLG--TPRGKKDAVTALFNLSTH----T---DNCVRMIEAGAVTALVGALG----------HEGV-------- 572 (715)
Q Consensus 520 ~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~----~---~n~~~iv~aG~v~~Lv~lL~----------~~~~-------- 572 (715)
.+.+++=.-+ ...--...+..++.++.. . .-|..+++.|++...+.+|. ++++
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 3333331111 111112234555555432 1 24778899999999988883 1122
Q ss_pred HHHHHHHHHHHhCCcchHHHHhhhCCcHHHH
Q 038217 573 AEEAAGALALIVRQPIGAAAVGEEEMAVTGL 603 (715)
Q Consensus 573 ~~~al~~L~~La~~~e~~~~i~~~g~~I~~L 603 (715)
...++.+|.-||......+.++..+. |+.+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~-l~~l 381 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAEQL-LPLL 381 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhH-HHHH
Confidence 34577777777765444444454455 5333
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=86.08 E-value=1.1 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=25.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhc
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~ 461 (715)
+|.+++++.+++++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=85.95 E-value=22 Score=39.61 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHhhcC-Cc--------cHHHHHHhC----ChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 518 AVEALATLLRLGTPRGKKDAVTALFNLSTH-TD--------NCVRMIEAG----AVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 518 ~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~-~~--------n~~~iv~aG----~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
.+..|+.++.+ +.....|+.++.-|..+ ++ +...+.+.. .+|.|++..+ +.+.+...+.+|..
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 45567777754 55566677776666655 22 223333333 4666666664 34577888889988
Q ss_pred HhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHH
Q 038217 583 IVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQAL 650 (715)
Q Consensus 583 La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 650 (715)
+..+-....-+-+.+..+|.|++-|...+...+..++.+|..+....++-....+. .+++.|+.+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~---sLI~~LL~l 414 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS---SLIPRLLKL 414 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHhc
Confidence 87653322333444555788888888788899999999999999887433332221 246666554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.74 E-value=71 Score=39.16 Aligned_cols=222 Identities=16% Similarity=0.143 Sum_probs=131.8
Q ss_pred HhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch
Q 038217 386 EANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 386 ~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~ 464 (715)
+..+..+..|.+.|++.+..++-.|+.-+..++...| ..+++ .+|...+.++.- .+...-..|+.+|..|+.--=
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 3455788888899999999999999999999998877 23332 355666665554 345666788888888874221
Q ss_pred hhhhhhhhcCcHHHHHHHHhc----C---CCHHHHHHHHHHHHHhccCchhH--HHHhcccCcHHHH-HHHhhcCChhHH
Q 038217 465 NKSRIMDEEGCLGSIVKVLRF----G---LTTEARENAAATLFSLSAVHEYK--KKIADESGAVEAL-ATLLRLGTPRGK 534 (715)
Q Consensus 465 nk~~I~~~~g~i~~Lv~lL~~----~---~~~e~~~~Aa~~L~~Ls~~~~~~--~~I~~~~g~I~~L-v~LL~~~~~~~~ 534 (715)
-..... ..+++.++.-|.- | ....+|..|+.+++.++..-+.. +... ......| ..-+.+.....+
T Consensus 413 Llps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCchhhHh
Confidence 111111 2455666655532 1 12357899999999997633211 1111 1122222 233445556778
Q ss_pred HHHHHHHHHhhcCCccH---------------------H-----HHHHh-CChHHHHHhh-----C--ChhHHHHHHHHH
Q 038217 535 KDAVTALFNLSTHTDNC---------------------V-----RMIEA-GAVTALVGAL-----G--HEGVAEEAAGAL 580 (715)
Q Consensus 535 ~~A~~aL~nLs~~~~n~---------------------~-----~iv~a-G~v~~Lv~lL-----~--~~~~~~~al~~L 580 (715)
..|..|+........|. . .+.+. |+..+++.-| . |..+++.+..+|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 88888887776543332 1 11111 4444555444 1 778999999999
Q ss_pred HHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 581 ALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 581 ~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
..|+.. ..+-..... +++|+....+++...+.-+.
T Consensus 569 ~~Ls~~---~pk~~a~~~-L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 569 HKLSLT---EPKYLADYV-LPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHh---hHHhhcccc-hhhhhhhhcCCChHHhhhhH
Confidence 998642 222233344 67777766556655554443
|
|
| >KOG3002 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.52 E-value=0.82 Score=48.26 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
...+-+-||+|.+.|..|+.= .-||.-|..|-.+- ...||.|+.++.. +.+++|..+++..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhce
Confidence 456678999999999999744 77999999988643 5689999988863 36677777766543
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=84.36 E-value=12 Score=39.00 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=110.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcC-cHHHHHHHHhcC---CCHHHHHHHHHHHHHhccCchhHH
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEG-CLGSIVKVLRFG---LTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g-~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
..+...+.....+-+--++-.+.-+..+...-..+....+ ....+..++..+ .....+-.++.++.|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 3445555555444455556666666666655444441222 345555555443 256778889999999999988888
Q ss_pred HHhcccC-cHHHHHHHhhcC----ChhHHHHHHHHHHHhhcCC-ccH-HHHHHhCChHHHHHhh----CChhHHHHHHHH
Q 038217 511 KIADESG-AVEALATLLRLG----TPRGKKDAVTALFNLSTHT-DNC-VRMIEAGAVTALVGAL----GHEGVAEEAAGA 579 (715)
Q Consensus 511 ~I~~~~g-~I~~Lv~LL~~~----~~~~~~~A~~aL~nLs~~~-~n~-~~iv~aG~v~~Lv~lL----~~~~~~~~al~~ 579 (715)
.+....+ .|...+..+... +...+..++++++|++..- .++ ..-.....+..+++.+ .|++..-+++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 8877445 455555554443 5678888999999997521 111 1111112345555533 378999999999
Q ss_pred HHHHhCCcchHHHHhhhCCcHHHHHHHh--hcCChHHHHHHH
Q 038217 580 LALIVRQPIGAAAVGEEEMAVTGLVGMM--RCGTPRGKENAV 619 (715)
Q Consensus 580 L~~La~~~e~~~~i~~~g~~I~~Lv~lL--~~~s~~~ke~A~ 619 (715)
|.+|...+.......+.=+ +...+.-. ....++.++.+.
T Consensus 226 lGtL~~~~~~~~~~~~~l~-~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLD-VKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCT-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcC-hHHHHHHHHhcccchHHHHHhc
Confidence 9999977777666666434 44443322 224566666553
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=84.25 E-value=6.1 Score=45.28 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSI 479 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~L 479 (715)
.++..++.-|+.-|....+.-|+.... +|..++.|..+.|..++..|+..|-.+|.+. +.-. .++..|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~------kvaDvL 101 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS------KVADVL 101 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh------HHHHHH
Confidence 478888999999999999888877544 5778999999999999999999999999874 3333 345678
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 480 VKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
+++|++. +......+-.+|..|-
T Consensus 102 ~QlL~td-d~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 102 VQLLQTD-DPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHTT----HHHHHHHHHHHHHHH
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHH
Confidence 8899887 5554444445554443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.07 E-value=36 Score=40.74 Aligned_cols=264 Identities=16% Similarity=0.079 Sum_probs=155.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKT-GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
......++...++.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+....+++-.-. +..-+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti- 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI- 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-
Confidence 4445566666677777777777776643 22345666777778888888888888888776666666643222 33222
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.-.++.+...++.. ..+++.+....+..+-.. +.....+.. ...+|.++.+-.....+.+...+..+.-++....
T Consensus 436 -~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred -cccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 34566666677766 777777777666444332 223333444 5667777777655556777777777777776444
Q ss_pred HHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 551 CVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
..+...-..+.+..-+.| -.+.++|...|..++..-. ...-.. .- ++.++.+...++-..|...+.++..|+.-
T Consensus 512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~-i~k~L~~~~q~~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL-EE-IPKLLAMDLQDNYLVRMTTLFSIHELAEV 587 (759)
T ss_pred -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH-Hh-hHHHHHHhcCcccchhhHHHHHHHHHHHH
Confidence 222222122222222323 3778888888888775322 222222 22 55666555544455555555555544443
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 629 ~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.|.+.. . .-+++.+..+..+..+.+|-+++..|..+-.
T Consensus 588 ~g~ei~----~-~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 588 LGQEIT----C-EDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred hccHHH----H-HHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 333222 2 2347888888889999999888876665544
|
|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.06 E-value=0.17 Score=51.69 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCcCccCcccccCceeCCCccHh-hHHHHHHHHHhCCCCCCCCcccc
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTY-DRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtf-cr~cI~~w~~~~~~~CP~c~~~l 336 (715)
+..|.||++..+|-|.++|||.. |-.|=.+ -..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 77999999999999999999953 5555433 34799998754
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=83.87 E-value=85 Score=37.81 Aligned_cols=223 Identities=15% Similarity=0.072 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhhhhhh-hhcCcHHH
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNKSRIM-DEEGCLGS 478 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk~~I~-~~~g~i~~ 478 (715)
+..+....++...|..+++....+...+- -.+...+..+. +..+-++..|+.+++..+. ...+. ...+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 34555555677777665544333332221 12223333333 3445566677777766651 11111 13667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh--cCChhHHHHHHHHHHHhhcCCccHHHHHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR--LGTPRGKKDAVTALFNLSTHTDNCVRMIE 556 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 556 (715)
|.++.... +.++....+.+|......+.....-.. ....|..+.+.- +++|.+...+-.++..|+....|...+.+
T Consensus 535 L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 77777665 788888888888888777765555544 567777777653 35677777788888888875556555554
Q ss_pred hCChHHHHHhhC--C----hhHHHHHHHHHHHHhCC-c-chHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHHHHHHh
Q 038217 557 AGAVTALVGALG--H----EGVAEEAAGALALIVRQ-P-IGAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 557 aG~v~~Lv~lL~--~----~~~~~~al~~L~~La~~-~-e~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
. .+|.++..|. + ..+..-++.+|..+.+. + .--..+. .-. .|++.+ .+.+++...-.+|-.+|..+-.
T Consensus 613 ~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 R-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYA-FPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred H-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHH-hHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 4 7999999995 2 36777788888866653 2 2222222 233 677877 4666778888899999988887
Q ss_pred cCCHHHH
Q 038217 628 SGGASAT 634 (715)
Q Consensus 628 ~~~~~~~ 634 (715)
.+.++..
T Consensus 690 ~~~eq~~ 696 (1005)
T KOG2274|consen 690 VTLEQLL 696 (1005)
T ss_pred cCHHHHH
Confidence 7644433
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=83.59 E-value=2.2 Score=38.60 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=55.0
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
-..+..|+.+|....+..+...|+.=|..+....+....+.+..|+-..+..|+.+++++++..|+.++..|-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3467889999955436667777887788887755655555555899999999999999999999999987664
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.50 E-value=54 Score=35.33 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=114.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHc-CC-hHHHHHhhccC-----C--------HHHHHHHHH
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAK-TGKENRAFIAKA-GA-IPHLRNLLSTH-----N--------PVAQENSVT 454 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~-~~~~~r~~i~~~-G~-i~~Lv~lL~s~-----d--------~~~~~~A~~ 454 (715)
.+..+.+.|++........+++-|..+.. .+......+... +. .+.+.+++... + +.++.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36677788888888888888888888887 664555555543 44 45677777431 1 288888998
Q ss_pred HHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hccCc----hhHHHHhcccCcHHHHHHHhh
Q 038217 455 AMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFS-LSAVH----EYKKKIADESGAVEALATLLR 527 (715)
Q Consensus 455 aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~I~~~~g~I~~Lv~LL~ 527 (715)
.++.+.... .-+..+....+.+..+.+-|..+ +.++....+.+|.. +..+. ..|..+-+ ..++..|+.+..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 888875544 34777775788899999999886 88999988888874 44333 35666666 678899999876
Q ss_pred cCCh----hHHHHHHHHHHHhhcCCc
Q 038217 528 LGTP----RGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 528 ~~~~----~~~~~A~~aL~nLs~~~~ 549 (715)
..++ .....+-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 6555 778888899999997765
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.49 E-value=0.64 Score=49.34 Aligned_cols=44 Identities=16% Similarity=0.470 Sum_probs=36.2
Q ss_pred CCCcCccCccccc-Cce---eCCCccHhhHHHHHHHHHh-CCCCCCCCc
Q 038217 290 KDFCCPIMLDLMR-DPV---IISTGQTYDRRSIARWMEE-GHRTCPKTG 333 (715)
Q Consensus 290 ~~~~CpIc~~lm~-dPv---~~~cghtfcr~cI~~w~~~-~~~~CP~c~ 333 (715)
-++.|-.|++.+- .|- .++|.|.|.-.|.++++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3789999998763 333 3499999999999999964 678999998
|
|
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.42 E-value=0.63 Score=48.06 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=39.4
Q ss_pred CCCCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhC--CCCCCCCc
Q 038217 286 LSIPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEG--HRTCPKTG 333 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~--~~~CP~c~ 333 (715)
.....-|.||+..+.-. -|+.++|||..-...+.+.-+.| .+.||.|-
T Consensus 331 ~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 331 RHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 35667899999888765 48889999999999998887776 46899994
|
|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.22 E-value=1.4 Score=47.37 Aligned_cols=36 Identities=8% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCCCcCccCcccccC--ce-eCCCccHhhHHHHHHHHHh
Q 038217 289 PKDFCCPIMLDLMRD--PV-IISTGQTYDRRSIARWMEE 324 (715)
Q Consensus 289 ~~~~~CpIc~~lm~d--Pv-~~~cghtfcr~cI~~w~~~ 324 (715)
..-|.|.||.+-..- -. .++|+|.||+.|...|+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 347899999976654 33 3499999999999999974
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=82.46 E-value=29 Score=41.56 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=138.3
Q ss_pred cCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHH
Q 038217 443 THNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEA 521 (715)
Q Consensus 443 s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~ 521 (715)
+..+...-.|.+++...+... .+...+- -.+...+..+.....+-++..|..++..-....-.... .++.+..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~---~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~---~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ---HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSL---QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhhccCCCCchhHHHHHHHHhccCceecccc---chHHHHH
Confidence 345555556666666554332 2222111 23344444454443555666666666655522111111 2577888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhh----CChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 522 LATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL----GHEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 522 Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL----~~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
|..+....+.++...-+.+|+-.+..+.-.....+.-+.|..+.++ .|+-+...+-.++..|+....+..-+.+ -
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H
Confidence 8888776677888888899999988777777777777888877776 2777777888888877653333322222 2
Q ss_pred CcHHHHHHHhhcCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGT----PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQAL-LFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L-l~s~~~~~k~~A~~lL~~l~~ 671 (715)
+||.|+.+|.... .....-|+.+|-.+.++.+...-..+.. -+.|++... +++++....+.|...|+-+-.
T Consensus 614 -~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 -LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred -HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 4899999988743 5556777788877888776554444443 246666664 567777888999988887654
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=82.29 E-value=7.4 Score=36.48 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhc
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~ 461 (715)
+.++..|..+|.++++.++..|+..|..+.+.. ......++..+++..|++++. ..++.++..++..+.+.+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999873 556777888899999999997 4678999999999988864
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=81.65 E-value=19 Score=37.29 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHH
Q 038217 571 GVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQ 648 (715)
Q Consensus 571 ~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~ 648 (715)
.....|+.+|.-++- ++..+....+..+ +..|+.++.. .++..+-+++.+|..+...++.. .....+ .+++..+.
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~-m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-~r~FE~-~~Gl~~v~ 182 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQN-MELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-QRDFEE-LNGLSTVC 182 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhh-HHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-HHHHHH-hCCHHHHH
Confidence 345667888887766 7888888888888 9999999954 67899999999999999888554 335555 88999999
Q ss_pred HHhhcC--CHHHHHHHHHHHHHHH
Q 038217 649 ALLFTG--TKRARRKAASLARVFQ 670 (715)
Q Consensus 649 ~Ll~s~--~~~~k~~A~~lL~~l~ 670 (715)
.++++. +...+-|..+-|-+.-
T Consensus 183 ~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 183 SLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHccccccHHHhHHHHHHHHHHH
Confidence 999876 6677888776444443
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.63 E-value=23 Score=40.87 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH---cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhc
Q 038217 397 QQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK---AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473 (715)
Q Consensus 397 ~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~---~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~ 473 (715)
..+-.-+++.+.-|+..||.+.++...+-..+-. ...+..++..+. .++.-+.-++.+|.|+-.+..+++.+....
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455667888899999999999876655544442 235555666555 668888899999999988888888777332
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHhhcC-----ChhHHHHHHHHHHHhhc
Q 038217 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLLRLG-----TPRGKKDAVTALFNLST 546 (715)
Q Consensus 474 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL~~~-----~~~~~~~A~~aL~nLs~ 546 (715)
..+-..+.-.+++.+..++...+.+.+|+|.. ..+-. .|..+.|...+... +-+..-.++.||.+|+.
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222234443455666555556666542 11111 34555555554331 12344566778889998
Q ss_pred CCccHHHHHHhCChHHHHHhhC
Q 038217 547 HTDNCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~ 568 (715)
.+.+..++...-.|..++.-++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHH
Confidence 8888888877766777777764
|
|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.51 E-value=0.86 Score=45.22 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=44.4
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCC--CccccccCCCCccHHH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPK--TGQMLVHDRLVPNRAL 347 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l 347 (715)
+.+|||++....-|++- .|.|.|++..|..+++. ..+.||. |.+....+.+.-+..|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 57999999999999876 89999999999999873 3567887 7666666555544443
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.26 E-value=0.54 Score=57.27 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCCCcCccCccccc-CceeCCCccHhhHHHHHHHHHhCCCCCCCCc
Q 038217 287 SIPKDFCCPIMLDLMR-DPVIISTGQTYDRRSIARWMEEGHRTCPKTG 333 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~-dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~ 333 (715)
++-..+.|+||+++++ .-.+..|||-||..|+..|... +..||.|.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 4555679999999999 5567799999999999999998 78899997
|
|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
Probab=81.26 E-value=2.1 Score=35.13 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.-.|.||++-.- +|.+. .|+.-.||.|++-=.+.|+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 347999997543 45544 688888999999888899999999987654
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=80.93 E-value=3.3 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
+|.+++++.+.++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=80.88 E-value=63 Score=35.62 Aligned_cols=161 Identities=11% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccC--------------------------C----HHHHHHHHHHHhh
Q 038217 409 VAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTH--------------------------N----PVAQENSVTAMLN 458 (715)
Q Consensus 409 ~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--------------------------d----~~~~~~A~~aL~n 458 (715)
.|++.|..+....+..-..+.+.||+..++..|... + +--|...+..|++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 456666666666666666777788888887766421 0 0123444555544
Q ss_pred h----hc-Cchhhh---hhhhh-cCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh
Q 038217 459 L----SI-YDKNKS---RIMDE-EGCLGSIVKVLRFGL--TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR 527 (715)
Q Consensus 459 L----s~-~~~nk~---~I~~~-~g~i~~Lv~lL~~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~ 527 (715)
+ .. +..... .++ + ...+..|..++++.. -..+-..|+.++..+-.++.-.-.+..+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 3 22 222222 233 3 444566666776631 2456778888898888888877776666999999999988
Q ss_pred -cCC---hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCCh
Q 038217 528 -LGT---PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGHE 570 (715)
Q Consensus 528 -~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~~ 570 (715)
.+- .++...--.+|..||.+......+.+.+.++.+++++.++
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 543 4555556677888999999999999999999999999654
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=80.81 E-value=6.9 Score=37.32 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=88.8
Q ss_pred hHHHHHhhc--cCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHH
Q 038217 434 IPHLRNLLS--THNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKK 510 (715)
Q Consensus 434 i~~Lv~lL~--s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~ 510 (715)
+..++..|. ...++++-.+.-++..+- +..+.... .-.-+-+-..+..+ +.+....+..++..|-. ..+...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 445555554 356778888888887773 33333333 12222333334443 45577778888877754 445666
Q ss_pred HHhcccCcHHHHHHHhh--cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---Chh-HHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLR--LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEG-VAEEAAGALA 581 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~-~~~~al~~L~ 581 (715)
.|....|.++.++.++. ..+......++.+|..=|. ++++..++...+++.|-..++ ++. ++..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 77665899999999998 5566777777777665555 445555555567999999985 233 5666666554
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.50 E-value=76 Score=32.87 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=34.5
Q ss_pred cCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 038217 431 AGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS 503 (715)
Q Consensus 431 ~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 503 (715)
..++|.|+..|.. ..+-++..|..+|.++- . .+.++.+-+..+.. ..++++.+..++..+-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDP-CKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCC-ccccchHHHHHHHHHH
Confidence 3467888887765 34667778888887654 2 22333333333333 4555555555555553
|
|
| >KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.46 E-value=93 Score=34.17 Aligned_cols=104 Identities=9% Similarity=0.053 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHH
Q 038217 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----HNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLG 477 (715)
Q Consensus 404 ~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~ 477 (715)
.++..+|+.+|.|+..++...|....+......+++++.. .-.+++..=+..|+-|+.-+ +.|.++..+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4566789999999999999999999988877777775543 11234444566666664433 55666655899999
Q ss_pred HHHHHHhcC--CC---------H---HHHHHHHHHHHHhccCch
Q 038217 478 SIVKVLRFG--LT---------T---EARENAAATLFSLSAVHE 507 (715)
Q Consensus 478 ~Lv~lL~~~--~~---------~---e~~~~Aa~~L~~Ls~~~~ 507 (715)
.+...|... .+ + +..-.++.++||+..+..
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 999999642 11 1 223456777888876543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=80.22 E-value=45 Score=37.15 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=111.5
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh-hcCCh----hHHHHHHHHHHHhhcCCc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL-RLGTP----RGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL-~~~~~----~~~~~A~~aL~nLs~~~~ 549 (715)
.+..++.+..+..+...+..++..+..|..--.....+ ...+..+..-+ ..... ....-.+|....|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 56667777666545666777777777665421111111 12333333333 12222 233333444444443222
Q ss_pred cHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCC-cch-------------HHHHhhhCCcHHHHHHHhhcCChHHH
Q 038217 550 NCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQ-PIG-------------AAAVGEEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~-~e~-------------~~~i~~~g~~I~~Lv~lL~~~s~~~k 615 (715)
-. ....+..|+.+|+++.+...+...+..|... ++. |+.+.. .. +|.|++-.+..+...|
T Consensus 267 ~~----~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~-~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 PL----ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QV-LPKLLEGFKEADDEIK 340 (415)
T ss_pred ch----HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HH-HHHHHHHHhhcChhhH
Confidence 11 1134667888888888888888888887664 221 222222 22 5777777777677789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 616 ENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 616 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
.+.+.+|.++..+-+..+...-. ..++|.|++-+...++..+..+-..|..+-+..
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999988754432222 337888888888888888888877776665543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 715 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 1e-21 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 3e-06 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 3e-06 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 8e-06 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 3e-05 | ||
| 1wgm_A | 98 | Solution Structure Of The U-Box In Human Ubiquitin | 9e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
|
| >pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-51
Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 4/237 (1%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
+ QQL + + + A R+ + G E + AGA+P L LLS+ N + +
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ A+ N++ + + + + G L ++V++L + + A L ++++ + +
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 133
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALGH-- 569
++GA+ AL LL + ++A+ AL N+++ + ++ + +AGA+ ALV L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 570 EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626
E + +EA AL+ I +E A+ L + + ++ A AL +L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 49/247 (19%), Positives = 110/247 (44%), Gaps = 6/247 (2%)
Query: 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK 481
+ + +P + L++ + Q ++ + + + + + G L ++V+
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61
Query: 482 VLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTAL 541
+L + + A L ++++ + + ++GA+ AL LL + ++A+ AL
Sbjct: 62 LLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 542 FNLSTHTDNCVRMI-EAGAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEM 598
N+++ + ++ + +AGA+ ALV L +E + +EA AL+ I +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 599 AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRA 658
A+ LV ++ + + A+ AL + SGG + V +A AL L Q L ++
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQ-LQSHENEKI 238
Query: 659 RRKAASL 665
+++A
Sbjct: 239 QKEAQEA 245
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L+Q L++ + + A + +A G E + AGA+P L LLS+ N + +
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ A+ N++ + + + + G L ++V++L + + A L ++++ +K+
Sbjct: 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQA 217
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E+GA+E L L + +K+A AL L +H
Sbjct: 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 5e-45
Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
++QQL + + A R++ +A G E + AGA+P L LLS+ N + +
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ A+ N++ + + + + G L ++V++L + + A L ++++ + +
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 133
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALGH-- 569
++GA+ AL LL + ++A+ AL N+++ + + + EAGA+ L H
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 570 EGVAEEAAGALALI 583
E + +EA AL +
Sbjct: 194 EKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 38/208 (18%), Positives = 95/208 (45%), Gaps = 4/208 (1%)
Query: 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK 481
+ + +P + L++ + ++++ + ++ + + + + G L ++V+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 482 VLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTAL 541
+L + + A L ++++ + + ++GA+ AL LL + ++A+ AL
Sbjct: 62 LLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 542 FNLSTHTDNCVRMI-EAGAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEM 598
N+++ + ++ + +AGA+ ALV L +E + +EA AL+ I +E
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 599 AVTGLVGMMRCGTPRGKENAVAALLELC 626
A+ L + + ++ A AL +L
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 2e-22
Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L+Q L++ + + A + +A G E + AGA+P L LLS+ N + +
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ A+ N++ + + + + G L ++V++L + + A L ++++ +K+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQA 175
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E+GA+E L L + +K+A AL L +H
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 5e-44
Identities = 54/295 (18%), Positives = 102/295 (34%), Gaps = 10/295 (3%)
Query: 376 ASALPSRAAVEANRATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAI 434
+ SR A+ + +++ + N + A + L+ +E I K+G I
Sbjct: 42 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGI 100
Query: 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEAREN 494
P L +L + ++T + NL ++ + + G L +V +L +
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAI 159
Query: 495 AAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKK-DAVTALFNLSTHTDNCVR 553
L L+ ++ K I SG +AL ++R T L LS + N
Sbjct: 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 219
Query: 554 MIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGT 611
++EAG + AL L + + + L + E + LV ++
Sbjct: 220 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDD 276
Query: 612 PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666
A L L V + + L++ +L G + + A A
Sbjct: 277 INVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-36
Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 17/299 (5%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQEN 451
L + L + AA + L+K A + + + + +T++
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
+ + NLS + + I + G + ++VK+L A TL +L E K
Sbjct: 77 TAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKM 134
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLS-THTDNCVRMIEAGAVTALVGALGH- 569
+G ++ + LL + L L+ + ++ + ++ +G ALV +
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194
Query: 570 --EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627
E + + L ++ A+ E + L + + R +N + L L
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNLS- 252
Query: 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS----LARVFQRCENAALHFGGL 682
+AT++ L L+Q LL + AA L + + GG+
Sbjct: 253 ---DAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 52/279 (18%), Positives = 97/279 (34%), Gaps = 8/279 (2%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L++ L + A + L + + + AG + + LL+ N +
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ L+ ++ I+ G ++V ++R + + L LS K I
Sbjct: 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 220
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL--GHE 570
E+G ++AL L + R ++ + L NLS + G + LV L
Sbjct: 221 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDI 277
Query: 571 GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG--KENAVAALLELC-R 627
V AAG L+ + + + + LV + R E A+ AL L R
Sbjct: 278 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337
Query: 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666
A + ++ + ++ LL + KA
Sbjct: 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 3e-34
Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 8/241 (3%)
Query: 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL 487
AIP L LL+ + V + + LS + ++ IM + +IV+ ++
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E A TL +LS E I +SG + AL +L A+T L NL H
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128
Query: 548 TDNCVRMI-EAGAVTALVGAL--GHEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGL 603
+ + AG + +V L + L L + L
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQAL 187
Query: 604 VGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663
V +MR T + +L++ S +S +++A + L L ++R +
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCL 245
Query: 664 S 664
Sbjct: 246 W 246
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 43/272 (15%), Positives = 82/272 (30%), Gaps = 34/272 (12%)
Query: 393 ELLIQQLANGSPRAKTV--AAREIRLLAKTGKEN---RAFIAKAGAIPHLRNLLSTHNPV 447
E L++ + R A +R L +E + + +P + LL +
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 448 AQENSVTAML-NLSIYDKNKSRIMDEEGCLGSIVKVLRFG-------------------- 486
+ ++ NL++ N + + E+G + +V++L
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426
Query: 487 -LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545
E E L L+ + I + LL ++ A L L+
Sbjct: 427 VRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCELA 485
Query: 546 THTDNCVRMIEAGAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGL 603
+ + GA L L +EGVA AA L + ++ ++V
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE---DKPQDYKKRLSVELT 542
Query: 604 VGMMRCGTPRGKENAVAALLELCRSGGASATE 635
+ R E A L + +
Sbjct: 543 SSLFRTEPMAWNETADLGLDIGAQGEPLGYRQ 574
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 9e-44
Identities = 54/295 (18%), Positives = 102/295 (34%), Gaps = 10/295 (3%)
Query: 376 ASALPSRAAVEANRATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAI 434
+ SR A+ + +++ + N + A + L+ +E I K+G I
Sbjct: 45 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGI 103
Query: 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEAREN 494
P L +L + ++T + NL ++ + + G L +V +L +
Sbjct: 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAI 162
Query: 495 AAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKD-AVTALFNLSTHTDNCVR 553
L L+ ++ K I SG +AL ++R T L LS + N
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
Query: 554 MIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGT 611
++EAG + AL L + + + L + E + LV ++
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDD 279
Query: 612 PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666
A L L V + + L++ +L G + + A A
Sbjct: 280 INVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 5e-36
Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 17/299 (5%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQEN 451
L + L + AA + L+K A + + + + +T++
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
+ + NLS + + I + G + ++VK+L A TL +L E K
Sbjct: 80 TAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKM 137
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLS-THTDNCVRMIEAGAVTALVGALGH- 569
+G ++ + LL + L L+ + ++ + ++ +G ALV +
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197
Query: 570 --EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627
E + + L ++ A+ E + L + + R +N + L L
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNLS- 255
Query: 628 SGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS----LARVFQRCENAALHFGGL 682
+AT++ L L+Q LL + AA L + + GG+
Sbjct: 256 ---DAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 54/280 (19%), Positives = 97/280 (34%), Gaps = 10/280 (3%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L++ L + A + L + + + AG + + LL+ N +
Sbjct: 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ L+ ++ I+ G ++V ++R + + L LS K I
Sbjct: 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--E 570
E+G ++AL L + R ++ + L NLS + G + LV LG
Sbjct: 224 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDI 280
Query: 571 GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG--KENAVAALLELCRS 628
V AAG L+ + + + + LV + R E A+ AL L
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 629 GGAS--ATERVLKAPALVGLLQALLFTGTKRARRKAASLA 666
+ A V L +++ LL + KA
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVK-LLHPPSHWPLIKATVGL 379
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 5e-34
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 6/240 (2%)
Query: 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL 487
AIP L LL+ + V + + LS + ++ IM + +IV+ ++
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547
E A TL +LS E I +SG + AL +L A+T L NL H
Sbjct: 73 DVETARCTAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 548 TDNCVRMI-EAGAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLV 604
+ + AG + +V L + L ++ + + LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 605 GMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664
+MR T + +L++ S +S +++A + L L ++R +
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLW 249
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-33
Identities = 52/299 (17%), Positives = 95/299 (31%), Gaps = 36/299 (12%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L L + S R +R L+ G + L LL + + +
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE-ARENAAATLFSLSAVHEYKKKIA 513
+ NL+ + ++ + G + ++V+ + E E A L L++ H+ +
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348
Query: 514 D---ESGAVEALATLLRLGTPRGKKDAVTALF-NLSTHTDNCVRMIEAGAVTALVGALGH 569
+ + + LL + A L NL+ N + E GA+ LV L
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408
Query: 570 ------------------------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG 605
E + E GAL ++ R + + V
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQ 467
Query: 606 MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664
++ + A L EL + A+ E + A L LL + + AA+
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAA--EAIEAEGA-TAPLTELLHSRNEGVATYAAA 523
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 31/220 (14%)
Query: 393 ELLIQQLANGSPRAKTV--AAREIRLLAKTGKEN---RAFIAKAGAIPHLRNLLSTHNPV 447
E L++ + R A +R L +E + + +P + LL +
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 448 AQENSVTAML-NLSIYDKNKSRIMDEEGCLGSIVKVLRFG-------------------- 486
+ ++ NL++ N + + E+G + +V++L
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429
Query: 487 -LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545
E E L L+ + I + LL ++ A L L+
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCELA 488
Query: 546 THTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALI 583
+ + GA L L EGVA AA L +
Sbjct: 489 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 36/175 (20%), Positives = 54/175 (30%), Gaps = 25/175 (14%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQ--- 449
++++ L S A + N A + + GAIP L LL + Q
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417
Query: 450 -------------------ENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE 490
E A+ L+ N+ I + V++L
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSP-IEN 475
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545
+ AA L L+ E + I E GA L LL A LF +S
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 373 ESFASALPSRAAVEANRATA------ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA 426
E AL A NR L +Q L + + VAA + LA+ KE
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAE 495
Query: 427 FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460
I GA L LL + N + + +S
Sbjct: 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 540 ALFNLSTHTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPIGAAAVGEEE 597
A+ NL + D+ + A+ L L E V +AA + + ++ A+
Sbjct: 1 AVVNLINYQDD--AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 598 MAVTGLVGMMRCGT-PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK 656
V+ +V M+ L L + K+ + L++ +L +
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVK-MLGSPVD 115
Query: 657 RARRKAA 663
A
Sbjct: 116 SVLFYAI 122
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-41
Identities = 40/73 (54%), Positives = 56/73 (76%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
P+ F CPI L+LM+DPVI+STGQTY+R SI +W++ GH+TCPK+ + L+H L PN L
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 348 RNLIVQWCTAHGI 360
++LI WC ++GI
Sbjct: 65 KSLIALWCESNGI 77
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 7e-40
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 270 KKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTC 329
+ + IP C I +LMR+P I +G TYDR+ I ++
Sbjct: 85 MDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD 144
Query: 330 PKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPYD 363
P T L D+L+PN A++ +I + +G D
Sbjct: 145 PVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVED 178
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-37
Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 33/310 (10%)
Query: 382 RAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL 441
EA+ + + A + L+ +E+R + + G + + LL
Sbjct: 24 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELL 82
Query: 442 STH-----------NPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTT 489
+ + + A+ NL+ D NK+ + +GC+ ++V L+ +
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SE 141
Query: 490 EARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNLST 546
+ ++ A+ L +LS KK + E G+V+AL K ++AL+NLS
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 547 H-TDNCVRMI-EAGAVTALVGALGH------EGVAEEAAGAL----ALIVRQPIGAAAVG 594
H T+N + GA+ LVG L + + E G L +LI +
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG 654
E + L+ ++ + NA L L E + A V +L+ L+ +
Sbjct: 261 ENN-CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGA-VSMLKNLIHSK 317
Query: 655 TKRARRKAAS 664
K +A+
Sbjct: 318 HKMIAMGSAA 327
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 12/216 (5%)
Query: 380 PSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLA-KTGKENRAFIAKAGAIPHL- 437
++A + + + L+ QL + S + V A +R L+ + ++ + + G++ L
Sbjct: 117 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176
Query: 438 RNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGL---TTEARE 493
L ++ ++A+ NLS + +NK+ I +G L +V L + T E
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 494 NAAATLFSLS---AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTD 549
+ L ++S A +E ++I E+ ++ L L+ + +A L+NLS +
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296
Query: 550 NCVRMIEAGAVTALVGAL--GHEGVAEEAAGALALI 583
+ + + GAV+ L + H+ +A +A AL +
Sbjct: 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 15/252 (5%)
Query: 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI-AKAGAIPHLRNLLSTHNPV 447
+ E+ + S + A + L N+A + + G + L L + +
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142
Query: 448 AQENSVTAMLNLSIYDKNKSR-IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-V 505
Q+ + + NLS S+ + E G + ++++ ++ + L++LSA
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
Query: 506 HEYKKKIADESGAVEALATLLRLGTPRG----KKDAVTALFNLS----THTDNCVRMIEA 557
E K I GA+ L L + + L N+S T+ D+ + E
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262
Query: 558 GAVTALVGALGH--EGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG 614
+ L+ L + A G L L R P A+ + AV+ L ++
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIHSKHKMI 321
Query: 615 KENAVAALLELC 626
+ AAL L
Sbjct: 322 AMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 9e-24
Identities = 47/272 (17%), Positives = 90/272 (33%), Gaps = 25/272 (9%)
Query: 416 LLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGC 475
+ A A + +N + +V ++ LS ++++ + E G
Sbjct: 16 IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN-ELGG 74
Query: 476 LGSIVKVLRFGLTTEA----------RENAAATLFSLSA-VHEYKKKIADESGAVEALAT 524
L +I ++L+ R A L +L+ K + G + AL
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 134
Query: 525 LLRLGTPRGKKDAVTALFNLSTHTDNCVR--MIEAGAVTALVGALGH---EGVAEEAAGA 579
L+ + ++ + L NLS D + + E G+V AL+ E + A
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 580 LA-LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG----KENAVAAL--LELCRSGGAS 632
L L A + + A+ LVG + + E+ L + +
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254
Query: 633 ATERVLKAPALVGLLQALLFTGTKRARRKAAS 664
+ + + L LLQ L + + A
Sbjct: 255 HRQILRENNCLQTLLQ-HLKSHSLTIVSNACG 285
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 12/202 (5%)
Query: 374 SFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-G 432
S+ + + S+ + + L+ L + L+ EN+A I G
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214
Query: 433 AIPHLRNLLS----THNPVAQENSVTAMLNLSIY---DKNKSRIMDEEGCLGSIVKVLRF 485
A+ L L+ T+ E+ + N+S +++ +I+ E CL ++++ L+
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 486 GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545
+ NA TL++LSA + ++ + GAV L L+ + AL NL
Sbjct: 275 H-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333
Query: 546 THTDNCVRMIEAGAVTALVGAL 567
+ + + + +L
Sbjct: 334 ANRPAKYK---DANIMSPGSSL 352
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 8e-15
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 14/173 (8%)
Query: 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL- 567
+ ++ + AV L LS ++ M E G + A+ L
Sbjct: 24 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 83
Query: 568 ------------GHEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG 614
+ A AL L A + + + LV ++ +
Sbjct: 84 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 143
Query: 615 KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667
++ + L L ++ + + + ++ L++ L + + S
Sbjct: 144 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-36
Identities = 54/272 (19%), Positives = 95/272 (34%), Gaps = 13/272 (4%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
+Q+LA S K I AIP L LL+ + V +
Sbjct: 120 NVQRLAEPSQMLKHAVVNLINYQDDA-------ELATRAIPELTKLLNDEDQVVVNKAAV 172
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514
+ LS + ++ IM + +IV+ ++ E + TL +LS E I
Sbjct: 173 MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF- 231
Query: 515 ESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALGH--EG 571
+SG + AL +L A+T L NL H + + AG + +V L
Sbjct: 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 291
Query: 572 VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA 631
L ++ + + LV +MR T + +L++ S +
Sbjct: 292 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS 350
Query: 632 SATERVLKAPALVGLLQALLFTGTKRARRKAA 663
S +++A + L L ++R +
Sbjct: 351 SNKPAIVEAGGMQALGL-HLTDPSQRLVQNCL 381
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 8e-34
Identities = 52/299 (17%), Positives = 95/299 (31%), Gaps = 36/299 (12%)
Query: 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVT 454
L L + S R +R L+ G + L LL + + +
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421
Query: 455 AMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE-ARENAAATLFSLSAVHEYKKKIA 513
+ NL+ + ++ + G + ++V+ + E E A L L++ H+ +
Sbjct: 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQ 481
Query: 514 D---ESGAVEALATLLRLGTPRGKKDAVTALF-NLSTHTDNCVRMIEAGAVTALVGALGH 569
+ + + LL + A L NL+ N + E GA+ LV L
Sbjct: 482 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 541
Query: 570 ------------------------EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVG 605
E + E GAL ++ R + + V
Sbjct: 542 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN-TIPLFVQ 600
Query: 606 MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664
++ + A L EL + A+ E + A L LL + + AA+
Sbjct: 601 LLYSPIENIQRVAAGVLCELAQDKEAA--EAIEAEGA-TAPLTELLHSRNEGVATYAAA 656
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-33
Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 10/277 (3%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L+ L + A + L + + + AG + + LL+ N +
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ L+ ++ I+ G ++V ++R + + L LS K I
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL--GHE 570
E+G ++AL L + R ++ + L NLS + G + LV L
Sbjct: 357 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDI 413
Query: 571 GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG--KENAVAALLELCRS 628
V AAG L+ + + + + LV + R E A+ AL L
Sbjct: 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473
Query: 629 GGAS--ATERVLKAPALVGLLQALLFTGTKRARRKAA 663
+ A V L +++ LL + KA
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVK-LLHPPSHWPLIKAT 509
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 1e-22
Identities = 40/264 (15%), Positives = 83/264 (31%), Gaps = 32/264 (12%)
Query: 393 ELLIQQLANGSPRAKTV--AAREIRLLAKTGKEN---RAFIAKAGAIPHLRNLLSTHNPV 447
E L++ + R A +R L ++ + + +P + LL +
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503
Query: 448 AQENSVTAML-NLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506
+ ++ NL++ N + + E+G + +V++L + + + V
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVE 561
Query: 507 EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGA 566
+ + E+ AL L+ N + + + V
Sbjct: 562 GVRMEEIVEA--------------------CTGALHILARDIHNRIVIRGLNTIPLFVQL 601
Query: 567 L--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624
L E + AAG L + + A A+ E E A L ++ A A L
Sbjct: 602 LYSPIENIQRVAAGVLCELAQDKEAAEAI-EAEGATAPLTELLHSRNEGVATYAAAVLFR 660
Query: 625 LCRSGGASATERVLKAPALVGLLQ 648
+ ++ L L +
Sbjct: 661 MS-EDKPQDYKKRLSVELTSSLFR 683
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 4e-17
Identities = 39/213 (18%), Positives = 63/213 (29%), Gaps = 25/213 (11%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQ--- 449
++++ L S A + N A + + GAIP L LL + Q
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550
Query: 450 -------------------ENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE 490
E A+ L+ N+ I + V++L
Sbjct: 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI-RGLNTIPLFVQLLYSP-IEN 608
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550
+ AA L L+ E + I E GA L LL A LF +S
Sbjct: 609 IQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667
Query: 551 CVRMIEAGAVTALVGALGHEGVAEEAAGALALI 583
+ + +T+ + E L +
Sbjct: 668 DYKKRLSVELTSSLFRTEPMTWNETGDLGLDIG 700
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 53/285 (18%), Positives = 102/285 (35%), Gaps = 7/285 (2%)
Query: 395 LIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSV 453
++ L + +A + +A + +AGA+P LLS+ QE +V
Sbjct: 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128
Query: 454 TAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIA 513
A+ N++ + + L ++++ NA L +L + A
Sbjct: 129 WALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188
Query: 514 DESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALGHE-- 570
S + L+ LL + DA AL LS ++ ++ + +AG LV L H
Sbjct: 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY 248
Query: 571 GVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629
V A A+ IV I + A+ L+ ++ K+ A + + +G
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCS-ALQSLLHLLSSPKESIKKEACWTISNIT-AG 306
Query: 630 GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674
+ + V+ A L+ L + + A ++
Sbjct: 307 NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA 351
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 7/289 (2%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVA-QEN 451
+ I+ L++ + A + +A R ++ +P L L S N + N
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
+V A+ NL CL + +L T+ +A L LS K +
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQ 228
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALGH- 569
++G L LL + A+ A+ N+ T D ++I A+ +L+ L
Sbjct: 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP 288
Query: 570 -EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628
E + +EA ++ I + L+ +++ R ++ A A+
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348
Query: 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAAS-LARVFQRCENAA 676
G A + +++ + L LL + + A + L + + E A
Sbjct: 349 GSAEQIKYLVELGCIKPLCD-LLTVMDSKIVQVALNGLENILRLGEQEA 396
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-27
Identities = 51/297 (17%), Positives = 104/297 (35%), Gaps = 10/297 (3%)
Query: 374 SFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKEN--RAFIAKA 431
F A + + +I+ + + SP + A ++ R L I+
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 432 GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE 490
G + L N Q S + N++ + ++RI+ + G + +++L +
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FED 122
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRG-KKDAVTALFNLSTHTD 549
+E A L +++ + + + L L ++AV AL NL
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 550 NCVRMI-EAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGM 606
+ + L L V +A AL+ + P + LV +
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242
Query: 607 MRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663
+ + A+ A+ + +G T+ +L AL LL LL + + +++A
Sbjct: 243 LMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLH-LLSSPKESIKKEAC 297
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-23
Identities = 41/260 (15%), Positives = 89/260 (34%), Gaps = 6/260 (2%)
Query: 393 ELLIQQLANGSPRA-KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN 451
L+Q + + A + L + F + + L LL + +
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
+ A+ LS +K + + + G +V++L + A + ++ + + +
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQ 270
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR-MIEAGAVTALVGAL--G 568
+ A+++L LL KK+A + N++ ++ +I+A AL+ L
Sbjct: 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330
Query: 569 HEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627
+EAA A+ E + L ++ + + A+ L + R
Sbjct: 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390
Query: 628 SGGASATERVLKAPALVGLL 647
G A L+
Sbjct: 391 LGEQEAKRNGTGINPYCALI 410
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 4e-19
Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 5/210 (2%)
Query: 380 PSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN 439
+L L A + L+ + + AG L
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241
Query: 440 LLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATL 499
LL ++ ++ A+ N+ D +++++ L S++ +L ++ A T+
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTI 300
Query: 500 FSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD--NCVRMIEA 557
+++A + + + ++ AL ++L+ R +K+A A+ N ++ ++E
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360
Query: 558 GAVTALVGALGH--EGVAEEAAGALALIVR 585
G + L L + + A L I+R
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 9e-15
Identities = 31/204 (15%), Positives = 79/204 (38%), Gaps = 18/204 (8%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
L++ L + + + A R + + I A+ L +LLS+ ++ +
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH--EYKK 510
+ N++ ++ + + + + +++ +L+ R+ AA + + ++ E K
Sbjct: 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIK 355
Query: 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN------------CVRMIEAG 558
+ E G ++ L LL + + + A+ L N+ + C + EA
Sbjct: 356 YLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414
Query: 559 AVTALVGALGHE--GVAEEAAGAL 580
+ + HE + ++A +
Sbjct: 415 GLDKIEFLQSHENQEIYQKAFDLI 438
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-34
Identities = 61/309 (19%), Positives = 114/309 (36%), Gaps = 31/309 (10%)
Query: 382 RAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL 441
EA+ + + A + L+ +E+R + + G + + LL
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELL 198
Query: 442 STH-----------NPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTT 489
+ + + A+ NL+ D NK+ + +GC+ ++V L+ +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SE 257
Query: 490 EARENAAATLFSLSAVHEYKKKIA-DESGAVEALATLLRLGT-PRGKKDAVTALFNLSTH 547
+ ++ A+ L +LS + K E G+V+AL K ++AL+NLS H
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 548 -TDNCVRMI-EAGAVTALVGALGH------EGVAEEAAGAL----ALIVRQPIGAAAVGE 595
T+N + GA+ LVG L + + E G L +LI + E
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 596 EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGT 655
+ L+ ++ + NA L L L V +L+ L+ +
Sbjct: 378 NN-CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ--EALWDMGAVSMLKNLIHSKH 434
Query: 656 KRARRKAAS 664
K +A+
Sbjct: 435 KMIAMGSAA 443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 17/255 (6%)
Query: 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI-AKAGAIPHLRNLLSTHNPV 447
+ E+ + S + A + L N+A + + G + L L + +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 448 AQENSVTAMLNLSIY--DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA- 504
Q+ + + NLS +K + E G + ++++ ++ + L++LSA
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 505 VHEYKKKIADESGAVEALATLLRLGTPRG----KKDAVTALFNLS----THTDNCVRMIE 556
E K I GA+ L L + + L N+S T+ D+ + E
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 557 AGAVTALVGAL--GHEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPR 613
+ L+ L + A G L L R P A+ + AV+ L ++
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIHSKHKM 436
Query: 614 GKENAVAALLELCRS 628
+ AAL L +
Sbjct: 437 IAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 12/214 (5%)
Query: 380 PSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLR 438
++A + + + L+ QL + S + V A +R L+ ++ + + G++ L
Sbjct: 233 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292
Query: 439 NLL-STHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGL---TTEARE 493
++ ++A+ NLS + +NK+ I +G L +V L + T E
Sbjct: 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352
Query: 494 NAAATLFSLS---AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTD 549
+ L ++S A +E ++I E+ ++ L L+ + +A L+NLS +
Sbjct: 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 412
Query: 550 NCVRMIEAGAVTALVGAL--GHEGVAEEAAGALA 581
+ + + GAV+ L + H+ +A +A AL
Sbjct: 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 1e-21
Identities = 56/352 (15%), Positives = 107/352 (30%), Gaps = 57/352 (16%)
Query: 371 SAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK 430
+ E++ L+ K +R + ++ + +++ + +
Sbjct: 10 HSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSS-QDSCISMRQ 68
Query: 431 AGAIPHLRNLL------------STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478
+G +P L LL S + A+ + A+ N+ + R E L
Sbjct: 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHL 128
Query: 479 IVKVLRFGLT-----------------------TEARENAAATLFSLSAVHEYKKKIADE 515
+ ++ + T A L LS E++ + E
Sbjct: 129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN-E 187
Query: 516 SGAVEALATLLRLGTPRGKKD-----------AVTALFNLSTHTDNCVRMI--EAGAVTA 562
G ++A+A LL++ A AL NL+ + G + A
Sbjct: 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247
Query: 563 LVGAL--GHEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGLVG-MMRCGTPRGKENA 618
LV L E + + A L L R + + E +V L+ + ++
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307
Query: 619 VAALLELCRSGGASATERVLKA---PALVGLLQALLFTGTKRARRKAASLAR 667
++AL L + + LVG L T T + R
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 7e-17
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 11/179 (6%)
Query: 381 SRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRN 439
S+ + + L+ L + L+ EN+A I GA+ L
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337
Query: 440 LLSTHNPV----AQENSVTAMLNLSIY----DKNKSRIMDEEGCLGSIVKVLRFGLTTEA 491
L+ + E+ + N+S + ++ + E CL ++++ L+ +
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSH-SLTI 395
Query: 492 RENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550
NA TL++LSA + ++ + GAV L L+ + AL NL +
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 1e-13
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 392 AELLIQQLANGSPRAKTVAA---REIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVA 448
L + + R + L T +++R + + + L L +H+
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395
Query: 449 QENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY 508
N+ + NLS + + + G + + ++ +AA L +L A
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 454
Query: 509 KKK 511
K K
Sbjct: 455 KYK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 62/319 (19%), Positives = 111/319 (34%), Gaps = 8/319 (2%)
Query: 375 FASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAI 434
AS ++ V + L IQ L GS K A + +A + R ++ + A+
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217
Query: 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEAREN 494
+ L +++ P + + NL K + L ++ K++ TE +
Sbjct: 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVD 276
Query: 495 AAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCVR 553
A + LS + + + + L LL + + A+ A+ N+ T D
Sbjct: 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 336
Query: 554 MIEAGAVTALVGALGH--EGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCG 610
+I AG + AL L E + +EA ++ I AV + + LV ++
Sbjct: 337 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN-LIPPLVKLLEVA 395
Query: 611 TPRGKENAVAALLELCRSGGASA-TERVLKAPALVGLLQALLFTGTKRARRKAAS-LARV 668
+ K+ A A+ G R L + + L LL R L +
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455
Query: 669 FQRCENAALHFGGLGVGYA 687
+ E G A
Sbjct: 456 LKMGEADKEARGLNINENA 474
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 4e-23
Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 7/275 (2%)
Query: 393 ELLIQQLANGSPRA-KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN 451
L++ + P + AA + +A + A A+P LL T + +E
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 192
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
++ A+ N++ + + + + I+ + A TL +L + +
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPD 251
Query: 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRM-IEAGAVTALVGALGH- 569
+ S A+ LA L+ DA A+ LS ++ I+ LV L H
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 570 -EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628
V A A+ IV V + L ++ K+ A + + +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT-A 370
Query: 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663
G + V+ A L+ L LL + +++A
Sbjct: 371 GNTEQIQAVIDA-NLIPPLVKLLEVAEYKTKKEAC 404
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 5e-20
Identities = 40/246 (16%), Positives = 92/246 (37%), Gaps = 8/246 (3%)
Query: 410 AAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN-LSIYDKNKSR 468
A + + + + + +P + L++ + Q ++ LS +
Sbjct: 65 ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124
Query: 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL 528
++ + G + +V+ +R + AA L ++++ + K+ ++ AV LL
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 529 GTPRGKKDAVTALFNLSTHTDNC-VRMIEAGAVTALVGALGHE--GVAEEAAGALALIVR 585
G+ K+ A+ AL N++ + + +++ A+ ++G + A L+ + R
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244
Query: 586 QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA---PA 642
A+ L ++ +A A+ L G A + V+
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKR 303
Query: 643 LVGLLQ 648
LV LL
Sbjct: 304 LVELLS 309
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-33
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 267 GSHKKRRK----GLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWM 322
GSHK K + P +F P+M LM DPV + +G DR I R +
Sbjct: 1 GSHKFAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL 60
Query: 323 EEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358
T P Q L L P L+ I W
Sbjct: 61 -LNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 6e-33
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
P +F P+M LM DPV + +G DR I R + T P QML L P L
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPEL 69
Query: 348 RNLIVQWCTAH 358
+ I W
Sbjct: 70 KEQIQAWMREK 80
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-30
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 277 ITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQ-TYDRRSIARWMEEGHRTCPKTGQM 335
+ Q+ ET+ +F PIM LM DPV++ + + T DR +IAR + T P
Sbjct: 8 LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSP 66
Query: 336 LVHDRLVPNRALRNLIVQWCTAH 358
L D++ PN L+ I +W
Sbjct: 67 LTMDQIRPNTELKEKIQRWLAER 89
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 10/277 (3%)
Query: 395 LIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSV 453
+ L + +A + +A E + GAIP +LL++ + E +V
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 164
Query: 454 TAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFG----LTTEARENAAATLFSLSAVHEYK 509
A+ N++ ++ + G + ++ +L L N TL +L
Sbjct: 165 WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 224
Query: 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI-EAGAVTALVGALG 568
+ + L LL P D+ A+ L+ + + M+ + G V LV LG
Sbjct: 225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284
Query: 569 H--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626
+ A A+ IV + A+ ++ ++ A + +
Sbjct: 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 627 RSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663
+G ++V+ LV L +L + +++AA
Sbjct: 345 -AGRQDQIQQVVNH-GLVPFLVGVLSKADFKTQKEAA 379
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-27
Identities = 58/309 (18%), Positives = 106/309 (34%), Gaps = 9/309 (2%)
Query: 376 ASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIP 435
AS + + I LA+ A + +A G R + K GAI
Sbjct: 129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 436 HLRNLLSTHNPVAQENSVTAML-----NLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE 490
L LL+ + L NL + E L ++V++L E
Sbjct: 189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPE 247
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD- 549
++ + L+ + ++ + G V L LL A+ A+ N+ T TD
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307
Query: 550 NCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM 607
++I+AGA+ L + + +EA ++ I V LVG++
Sbjct: 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367
Query: 608 RCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667
+ ++ A A+ G ++ + L+ L TK + +++
Sbjct: 368 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427
Query: 668 VFQRCENAA 676
+FQ E
Sbjct: 428 IFQAAEKLG 436
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 1e-20
Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 13/239 (5%)
Query: 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI-MDEEGCLGSIV 480
++ + ++++N +Q + A L +K + G + V
Sbjct: 47 DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 106
Query: 481 KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540
L + + +A L ++++ + K + GA+ A +LL + AV A
Sbjct: 107 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 166
Query: 541 LFNLSTHTDNCVRMI-EAGAVTALVGALGH-------EGVAEEAAGALALIVRQPIGAAA 592
L N++ ++ + GA+ L+ L G L+ + R A
Sbjct: 167 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 226
Query: 593 VGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA---PALVGLLQ 648
+ E + LV ++ P ++ A+ L G E V+K P LV LL
Sbjct: 227 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLG 284
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 1e-19
Identities = 50/303 (16%), Positives = 113/303 (37%), Gaps = 13/303 (4%)
Query: 371 SAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIR-LLAKTGKENRAFIA 429
+ + + + + E +++ + + + ++ A + R LL++ + I
Sbjct: 38 TDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 97
Query: 430 KAGAIPHL-RNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLT 488
+AG IP L T Q S A+ N++ +++ + + G + + + +L
Sbjct: 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-H 156
Query: 489 TEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTA-----LFN 543
E A L +++ + + + GA++ L LL + L N
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216
Query: 544 LSTHTDNCVRMI-EAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAV 600
L + + + + LV L H V ++ A++ + P + ++ V
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 601 TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARR 660
LV ++ A+ A+ + +G T++V+ A AL LL ++
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQK 334
Query: 661 KAA 663
+A
Sbjct: 335 EAT 337
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 3e-18
Identities = 36/215 (16%), Positives = 79/215 (36%), Gaps = 5/215 (2%)
Query: 375 FASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAI 434
++A L++ L + P + I L E + K G +
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEAREN 494
P L LL ++ A+ N+ +++ + + G L +L T ++
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKE 335
Query: 495 AAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN--CV 552
A T+ +++A + + + G V L +L + +K+A A+ N ++ V
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395
Query: 553 RMIEAGAVTALVGALGH--EGVAEEAAGALALIVR 585
++ G + L+ L + + A++ I +
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 33/307 (10%)
Query: 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQE 450
T +Q L++ + + + A I+ + + + + G I L +LL + N Q+
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 451 NSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510
+ A+ NL + + V +LR E ++ L++LS+ E K+
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 511 KIADESGAVEALATLLRLGTPRG----------------KKDAVTALFNLSTHTDNCVRM 554
++ + A+ LA + + +A L NLS+ M
Sbjct: 123 ELI--ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 555 IE-AGAVTALVGAL-GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTP 612
+G + +L+ + + ++ + + + E+
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 613 RGKENAVAALLELCRSGGASATERVLKAPA-------------LVGLLQALLFTGTKRAR 659
++++ + + L + L+ K A
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 660 RKAASLA 666
+A + A
Sbjct: 301 LEACAGA 307
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 5e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 14/169 (8%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRL------LAKTGKENRAFIAKAGAIPHLRNLLSTHNP 446
+ + A A + ++ K +P + LL + N
Sbjct: 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345
Query: 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTT-----EARENAAATLFS 501
+ + + N+S + + + ++L + +A T+ +
Sbjct: 346 DVVRSGASLLSNMSRHPLLHRVM--GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403
Query: 502 LSAVHEYKKKIADESGAVEALATLLRLG-TPRGKKDAVTALFNLSTHTD 549
L A K S + + L R +P+ + A L ++ + +
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 2e-14
Identities = 38/324 (11%), Positives = 94/324 (29%), Gaps = 40/324 (12%)
Query: 381 SRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNL 440
++ E + G+ + + L+ E + + A A+P L +
Sbjct: 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEELI-ADALPVLADR 135
Query: 441 L----------------STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR 484
+ +P N+ + NLS D + + + G + S++ ++
Sbjct: 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195
Query: 485 FGLTTE-----ARENAAATLFSLSAVHEYKKKIA---------DESGAVEALATLLRLGT 530
+ + EN L +LS + + + +
Sbjct: 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255
Query: 531 PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH---EGVAEEAAGALALIVRQP 587
+ L T+ + + A+ + +G + E AGAL +
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315
Query: 588 IGAA-----AVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA 642
+ +G +E + + +++ G + + L + R P
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPE 375
Query: 643 LVGLLQALLFTGTKRARRKAASLA 666
+ LL + + +++
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACY 399
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 7e-13
Identities = 35/279 (12%), Positives = 81/279 (29%), Gaps = 29/279 (10%)
Query: 376 ASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIP 435
+SA R + + L+ + N ++ + + +
Sbjct: 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASR-CDDKSVENCMCVLHNLSYRLDAEVPTR 229
Query: 436 HLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS---------------RIMDEEGCLGSIV 480
+ + + N +++S N S N + + + + +
Sbjct: 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL 289
Query: 481 KVLRFGLTTEARENAAATLFSLSAVH-----EYKKKIADESGAVEALATLLRLGTPRGKK 535
++ E A L +L+A + I + + +A LL+ G +
Sbjct: 290 NLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349
Query: 536 DAVTALFNLSTHTDNCVRMIEAG---AVTALVGALGH----EGVAEEAAGALALIVRQPI 588
+ L N+S H M L G+ E + A + ++
Sbjct: 350 SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
Query: 589 GAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAALLELC 626
A + ++ + R +P+ E A L ++
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 24/255 (9%)
Query: 127 FHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLD 186
H++ E+ P E ++++ ++ RQA+++ DK+ +L +
Sbjct: 705 VHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPA 764
Query: 187 EFEHGRVPNHV-DLRSFFVEGLGIKDAKTCR----AEIEFLEEQIVNHEGDAEPTASVLN 241
F + + + ++ +E L + F + ++ S +
Sbjct: 765 AFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQS 824
Query: 242 GFV-----------------AIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAET 284
F+ A+ R E +L ++K + +E
Sbjct: 825 EFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLE 884
Query: 285 FLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343
+ +P +F P+M +M+DPVI+ ++ DR +I + T P L + + P
Sbjct: 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTP 943
Query: 344 NRALRNLIVQWCTAH 358
N LR I+ +
Sbjct: 944 NEELRQKILCFKKQK 958
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 103 bits (256), Expect = 5e-23
Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 61/340 (17%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
+I L K+ AA ++ L + + + K IP L LL +
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGA 110
Query: 453 VTAMLNLSIYDKNKSR-IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511
A+ N+S ++ + + ++V++LR + E TL++LS+ K +
Sbjct: 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170
Query: 512 IADESGAVEALATLLRLGTPRGKKDA------------------VTALFNLSTHTDNCVR 553
I D A+ AL + + +++ L N+S+ R
Sbjct: 171 IVDH--ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228
Query: 554 MI--EAGAVTALVGALGH---------------------------------EGVAEEAAG 578
+ G V AL+ + E E A
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288
Query: 579 ALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGT-PRGKENAVAALLELCRSGGASATE-- 635
P + + V + +++ P E + A+ LC
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348
Query: 636 -RVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674
+ + AL + LL +R + A+ R
Sbjct: 349 SALRQEKALSAIAD-LLTNEHERVVKAASGALRNLAVDAR 387
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 91.6 bits (226), Expect = 2e-19
Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 16/217 (7%)
Query: 347 LRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGS-PR 405
LRNL Q E A + ++ + + I L P
Sbjct: 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPA 324
Query: 406 AKTVAAREIRLLAK----TGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI 461
+A I+ L G+ R+ + + A+ + +LL+ + + + A+ NL++
Sbjct: 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384
Query: 462 YDKNKSRIMDEEGCLGSIVKVLRFGLTT-------EARENAAATLFSLSAVHEYKKKIAD 514
+NK I + + ++VK L G + + T+ + A + K
Sbjct: 385 DARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR 442
Query: 515 ESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHTD 549
E+ +E L + + G + + + A L + + +
Sbjct: 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 1e-14
Identities = 35/264 (13%), Positives = 72/264 (27%), Gaps = 4/264 (1%)
Query: 416 LLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGC 475
L + + +P + +L + N+ + +L + + +
Sbjct: 32 LDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKG 91
Query: 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-KKIADESGAVEALATLLRLGTPRG- 533
+ +V +L E A L ++S + K V AL LLR
Sbjct: 92 IPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 534 KKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL-GHEGVAEEAAGALALIVRQPIGAAA 592
+ L+NLS+H + +++ + H G E +
Sbjct: 151 TEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT 210
Query: 593 VGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLF 652
+ R + V AL+ + ++ V LL+ L +
Sbjct: 211 NTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270
Query: 653 TGTKRARRKAASLARVFQRCENAA 676
+ + N
Sbjct: 271 QVHREIPQAERYQEAAPNVANNTG 294
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 2e-12
Identities = 49/260 (18%), Positives = 83/260 (31%), Gaps = 49/260 (18%)
Query: 411 AREIRLLAKTGKENR-AFIAKAGAIPHLRNLLSTH------NPVAQENSVTAMLNLSIYD 463
A +R ++ E R G + L ++ + EN V + NLS
Sbjct: 213 AGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272
Query: 464 KNKS-------------------------RIMDEEGCLGSIVKVLRFGLTTEARENAAAT 498
+ ++ + + + +L+ T E +A
Sbjct: 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332
Query: 499 LFSLSAVH----EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRM 554
+ +L A Y + + A+ A+A LL R K A AL NL+ N +
Sbjct: 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-EL 391
Query: 555 IEAGAVTALVGAL----------GHEGVAEEAAGALA-LIVRQPIGAAAVGEEEMAVTGL 603
I A+ LV L E + +I A + E + + L
Sbjct: 392 IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ-GIEKL 450
Query: 604 VGMMRCGTPRGKENAVAALL 623
V + + G KE AAL+
Sbjct: 451 VLINKSGNRSEKEVRAAALV 470
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 62.7 bits (151), Expect = 2e-10
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 8/195 (4%)
Query: 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPR 532
E +G V ++ A+ + S + + +L
Sbjct: 4 EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA 63
Query: 533 GKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGAL--GHEGVAEEAAGALA-LIVRQPI 588
K +A L +L D + + + LVG L + V A GAL + +
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 589 GAAAVGEEEMAVTGLVGMMRCGTPRG-KENAVAALLELCRSGGASATERVLKAPALVGLL 647
+ V LV ++R E L L + + + AL L
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH---DSIKMEIVDHALHALT 180
Query: 648 QALLFTGTKRARRKA 662
++ + R
Sbjct: 181 DEVIIPHSGWEREPN 195
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 5e-22
Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 28/207 (13%)
Query: 388 NRATAELLIQQL------ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL 441
+ A E+ +++ + P + AA I+ E R + + I L LL
Sbjct: 2 SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61
Query: 442 STHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500
N Q A+ NL + NK + E + +++VL+ E ++ L+
Sbjct: 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVA-ELNGVPRLLQVLKQTRDLETKKQITGLLW 120
Query: 501 SLSAVHEYKKKIADESGAVEALATLL---RLGTPRGKKD-------------AVTALFNL 544
+LS+ + K + + A+ L + G P G L N+
Sbjct: 121 NLSSNDKLKNLMI--TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
Query: 545 STHTD-NCVRMIEA-GAVTALVGALGH 569
S+ M G + +LV +
Sbjct: 179 SSAGADGRKAMRRCDGLIDSLVHYVRG 205
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 1e-21
Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQEN 451
L+Q L + + +R L +N+ +A+ +P L +L T + ++
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEAR---------------ENAA 496
+ NLS DK K+ ++ L ++ + + + N
Sbjct: 115 ITGLLWNLSSNDKLKNLMI--TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT 172
Query: 497 ATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKD------AVTALFNLSTHTD 549
L ++S+ + +K + G +++L +R + D V L NLS +
Sbjct: 173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 6e-13
Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 20/213 (9%)
Query: 471 DEEGCLGSIVKVLRFGLTTEA-RENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLG 529
D E L V +L + AA + +K ++ + L LL++
Sbjct: 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64
Query: 530 TPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGH---EGVAEEAAGALALIVR 585
++ AL NL DN + + E V L+ L ++ G L +
Sbjct: 65 NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 586 QPIGAAAVGEEEM-AVTGLVGMMRCGTPRGK-------------ENAVAALLELCRSGGA 631
+ E + +T + + G P G N L + S GA
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS-SAGA 183
Query: 632 SATERVLKAPALVGLLQALLFTGTKRARRKAAS 664
+ + + L+ L + + +
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 1/116 (0%)
Query: 559 AVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618
AV+ L AA + Q A + + L+ +++ +
Sbjct: 13 AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72
Query: 619 VAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674
AL L V + + LLQ L T +++ L +
Sbjct: 73 CGALRNLV-FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 3e-18
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHR-----TCPKTG---QMLV 337
S F CPI + M+ PV G TY+ +I R +E + CP+ G +
Sbjct: 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62
Query: 338 HDRLVPNRALRNLIVQWCTAHGIPYDPPET 367
L+ + ALR I + +
Sbjct: 63 KSDLIQDEALRRAIENHNKKRHRHSESGPS 92
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-17
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP C I +LMR+P I +G TYDR+ I ++ P T L ++L+PN A+
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 348 RNLIVQWCTAHGIPYD 363
+ +I + + +G D
Sbjct: 265 KEVIDAFISENGWVED 280
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 4e-17
Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 17/287 (5%)
Query: 373 ESFASALPSRAAVEANRAT------AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRA 426
E A L + ++ R + L++ G+ + K A + + + T +
Sbjct: 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572
Query: 427 F--IAKAGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVL 483
F I L NLL + S+ A+ NL+ +++ + + +E + I L
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632
Query: 484 RFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543
AA L +L + K + V+ LA L AL
Sbjct: 633 -MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAI 691
Query: 544 LSTHTDNCVRMI--EAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMA 599
+++ + C I A + L + + V + ++ A E
Sbjct: 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDI 751
Query: 600 VTGLVGMMRCG---TPRGKENAVAALLELCRSGGASATERVLKAPAL 643
+ L G+ + + +E A L R ++
Sbjct: 752 MELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVF 798
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 6e-17
Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 20/318 (6%)
Query: 371 SAESFASALPSRAAVEANRATAELLIQQLANGS--PRAKTVAAREIRLLAKTGKENRAFI 428
+ A A AE + L + AA + L + I
Sbjct: 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417
Query: 429 AKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLT 488
+I L +L N VT +NL + + + + + K + +
Sbjct: 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP----EMIELAKFAKQHIP 473
Query: 489 TEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548
E + +++ +A G AL L + + ++ L +
Sbjct: 474 EEHELDDVD------FINKRITVLA-NEGITTALCALAKTESHNSQELIARVLNAVCGLK 526
Query: 549 DNCVRMIEAGAVTALVGAL--GHEGVAEEAAGALA--LIVRQPIGAAAVGEEEMAVTGLV 604
+ ++++ G V AL+ G E A ALA I P + + + L+
Sbjct: 527 ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586
Query: 605 GMMRCG-TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAA 663
+++ T ++ AL L S S +R++K V ++ L R AA
Sbjct: 587 NLLQQDCTALENFESLMALTNLA-SMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAA 644
Query: 664 SLARVFQRCENAALHFGG 681
E+ F G
Sbjct: 645 QCLCNLVMSEDVIKMFEG 662
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 39/244 (15%), Positives = 69/244 (28%), Gaps = 11/244 (4%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENS 452
+ + + A + L + F +G + L + +
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 453 VTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512
+ S + G L ++++L R A + L E
Sbjct: 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162
Query: 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALGHE- 570
L ++ + K + L NL ++ + G V LV + E
Sbjct: 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 222
Query: 571 -GVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA------VAAL 622
E GAL +V P G E E+ + L+ RC + E L
Sbjct: 223 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL-RHRCQLLQQHEEYQEELEFCEKL 281
Query: 623 LELC 626
L+ C
Sbjct: 282 LQTC 285
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 2e-14
Identities = 98/659 (14%), Positives = 179/659 (27%), Gaps = 220/659 (33%)
Query: 6 IFSSLRRRRSPSLQAFLAPVDLTDVALVQTLLSISSELVSCFSDRCFFFQRR----NSRS 61
+F +L ++ +Q F+ V + + + I +E + ++R N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 62 LIRKM-----EAFLVL---LEYLRDSGTCIESTAVLCFKELYLLLYRCKILLDYCGQ--S 111
+ K + +L L L LR + +L+ G S
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAK--------------NVLID---------GVLGS 161
Query: 112 SKLWL---LLQNHSISGHFHDLNQEISTLLDVF---------PADDIELSEDVREQIDLM 159
K W+ + ++ + +F P +E+ + + QID
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF---------KIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 160 QRQ----ARNAKLHIDKNDELLRLRLFSF---------LDEFEHGRVPNHVDLRSFFVEG 206
+ N KL I LR RL L ++ + N +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLS------ 265
Query: 207 LGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGI 266
C+ + +Q+ + L+ DE +
Sbjct: 266 --------CKILLTTRFKQVTD----------FLSAATTTHISLDHHSMTLTPDEVK--- 304
Query: 267 GSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGH 326
L+ + + +P++ +P +S R +A W H
Sbjct: 305 --------SLLLKYLDCRPQDLPREVL-------TTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 327 RTCPKTGQMLVH--DRLVPNRALRNLIVQWCTAHGIPYDP----PETTDVSAESFASALP 380
C K ++ + L P R + +D P + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE-YRKM-----------FDRLSVFPPSAHIPTILL----- 392
Query: 381 SRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFI------AKAGAI 434
S + ++ +++ +L S L+ K KE+ I K
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYS------------LVEKQPKESTISIPSIYLELKV--- 437
Query: 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-------------------KSRIMDEEGC 475
L N + H + V +D + K+ E
Sbjct: 438 -KLENEYALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 476 LGSIV---------KVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526
L +V K+ A + TL L YK I D E L
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERL---- 544
Query: 527 RLGTPRGKKDAVTALFN-LSTHTDNCVRMIEAGAVTALVG-ALGHE--GVAEEAAGALA 581
V A+ + L +N + T L+ AL E + EEA +
Sbjct: 545 -----------VNAILDFLPKIEENLIC----SKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 3e-09
Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 106/326 (32%)
Query: 36 LLSISSELVSCFSDRCFFFQRRNSRSLIRKMEAFLVLLE--YLRDSGTCIESTAVLCFKE 93
LSI +E + ++ N L +E+ L +LE R F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----------MFDR 377
Query: 94 LYLLLYRCKI---LLDYCGQSSKLWLLLQNH---SISGHFH-------DLNQEISTLLDV 140
L + I LL S +W + + H + ++ +
Sbjct: 378 LSVFPPSAHIPTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 141 FPADDIELSEDVREQIDLMQRQARNAKLH---IDKNDELLRLRLFSFLDEFE-HGRVPNH 196
++L + LH +D ++ F+ +P +
Sbjct: 432 --------------YLELKVKLENEYALHRSIVDH---------YNIPKTFDSDDLIPPY 468
Query: 197 VDLRSFFVEGLG--IKDAKTCRAE-----------IEFLEEQIVNHEGDA-EPTASVLNG 242
+D +F +G +K+ + E FLE++I H+ A + S+LN
Sbjct: 469 LD--QYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNT 523
Query: 243 FVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFL------SIPKDFCCPI 296
+ Y + I + + + L+ I FL I + +
Sbjct: 524 LQQLKFYKPY-------------ICDNDPKYERLV-NAI-LDFLPKIEENLICSKYTDLL 568
Query: 297 MLDLMRDPVIISTGQTYDR--RSIAR 320
+ LM + ++ + + R
Sbjct: 569 RIALMAE-----DEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 7e-05
Identities = 51/312 (16%), Positives = 87/312 (27%), Gaps = 75/312 (24%)
Query: 279 QEIAETFL-SIPKDFCCPIMLDLMRDPV--------IISTGQTYDRRSIARWMEEGHRTC 329
++I F + +F C + D+ + + II + W +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE- 76
Query: 330 PKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP------Y---------DPPETT--DVSA 372
+ Q V + L N L+ T P Y D +VS
Sbjct: 77 -EMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 373 ESFASALPSRAAVEANRATAELLIQQLANGSPRAKTV----AAREIRLLAKTGKENRAFI 428
L R A+ R +LI + GS KT ++ K + + F
Sbjct: 134 LQPYLKL--RQALLELRPAKNVLIDGVL-GS--GKTWVALDVCLSYKVQCK--MDFKIFW 186
Query: 429 AKAGA-------IPHLRNLLSTHNP---VAQENSVTAMLNLSIYDKNKSRIMDEEG---C 475
+ L+ LL +P ++S L + R++ + C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 476 L--------GSIVKVLRFG----LTTEARENAAATLFSLSAVHEYKKKIADESGAV---E 520
L LTT ++ LSA + S + E
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF----LSAATTTHISLDHHSMTLTPDE 302
Query: 521 ALATLLR-LGTP 531
+ LL+ L
Sbjct: 303 VKSLLLKYLDCR 314
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 71.5 bits (174), Expect = 7e-14
Identities = 29/265 (10%), Positives = 71/265 (26%), Gaps = 21/265 (7%)
Query: 110 QSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPADDIELSEDVREQIDLMQRQARNAKLH 169
+S K + L +S + ++I ++ + + EQ+ + +
Sbjct: 17 KSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLS-- 74
Query: 170 IDKNDELLRLRLFSFLDEFEHGRVPNHVDLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNH 229
E + + + + + +T L E +N
Sbjct: 75 ---TYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTW--DKYRTGELTAPKLSELYLNM 129
Query: 230 EGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLITQEIAETFLSIP 289
T ++ + L + + + + + L +
Sbjct: 130 PTPEPATMVNNTDT---LKILKVLPYIWNDPTCVIPDLQNPADEDDLQIE-------GGK 179
Query: 290 KDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEE-GHRTCPKTG--QMLVHDRLVPNR 345
+ CPI P+I +DR I +++ R CP+ Q++ V +
Sbjct: 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239
Query: 346 ALRNLIVQWCTAHGIPYDPPETTDV 370
+ D + +
Sbjct: 240 IMELRCKIAKMKESQEQDKRSSQAI 264
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-13
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 292 FCCPIMLDLMRDPVI-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRA 346
C I + R PV+ + +++ + +++++ P T + L + +V
Sbjct: 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 9e-12
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIAR-WMEEGHRTCPKTGQMLVH-DRLVP 343
IP + C I D+M D V+I G +Y I +E TCP Q V D L+
Sbjct: 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68
Query: 344 NRALRNLI 351
N+ LR +
Sbjct: 69 NKFLRQAV 76
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
+I C I + +II Y I +++ CP + L NR
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNR 76
Query: 346 ALRNLIVQWCTAH 358
L L+ A
Sbjct: 77 ILDELVKSLNFAR 89
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
+ + CPI L +R+ V G + + I + + + CP ++L+ ++L P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 348 RNLIVQ---WCTAHG 359
+ I+ C G
Sbjct: 75 KREILSLMVKCPNEG 89
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 266 IGSHKKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEE 324
+G H + Q + I + F C I ++ +RD + + I RW+ E
Sbjct: 1 MGHHHHHHSHMDEQSVES----IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE 56
Query: 325 GHRTCPKTGQMLVHDRLVPNRALRNLI 351
CP L LV R +
Sbjct: 57 QRAQCPHCRAPLQLRELVNCRWAEEVT 83
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-08
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR-LVPNR 345
+ + F C +L+ PV + + R + +CP L + ++PN
Sbjct: 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133
Query: 346 ALRNLI 351
L+ L+
Sbjct: 134 ILQTLL 139
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-08
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 280 EIAETFLSIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVH 338
EI + S+ + CPI LD++++ + + I + G++ CP + LV
Sbjct: 43 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102
Query: 339 DR-LVPNRALRNLI 351
R L P+ LI
Sbjct: 103 KRSLRPDPNFDALI 116
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-08
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 270 KKRRKGLITQEIAETFLS-IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRT 328
+ + + FLS + + F C +L+ P+ + + R +
Sbjct: 30 ASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFS 89
Query: 329 CPKTGQMLVHDR-LVPNRALRNLI 351
CP L + N+ L+ ++
Sbjct: 90 CPACRYDLGRSYAMQVNQPLQTVL 113
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-07
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP-------KTGQMLVHDRLVP 343
+ C I ++++ +PV + T + +E+ CP + +
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74
Query: 344 NRALRNLIVQWC 355
N L +I +
Sbjct: 75 NVELWTIIQKHY 86
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIAR-WMEEGHRTCPKTGQMLVHDRLVPN 344
IP + C I D+M D V+I G +Y I +E TCP Q V
Sbjct: 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ-----NDVSP 65
Query: 345 RALRN 349
AL
Sbjct: 66 DALSG 70
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-07
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCP----KTGQMLVHDRL 341
+ C + D I ++ + I R++E + CP + + +
Sbjct: 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNI 69
Query: 342 VPNRALRNLI 351
++ L++++
Sbjct: 70 RSDKTLQDIV 79
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 279 QEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQML 336
+E+ ++ K CPI L+L+++PV + + + + + + G CP +
Sbjct: 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
Query: 337 VHDRLVPNRALRNLI 351
L + L+
Sbjct: 69 TKRSLQESTRFSQLV 83
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-07
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWME-----EGHRTCPKTGQMLVHDRLVPN 344
++ CPI L+L+++PV ++ R I E +G CP L PN
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77
Query: 345 RALRNLI 351
+ N++
Sbjct: 78 LHVANIV 84
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 1e-06
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
+ + CPI L +R+ V G + + I + + + CP ++L+ ++L P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 348 RNLIVQ---WCTAHG 359
+ I+ C G
Sbjct: 75 KREILSLMVKCPNEG 89
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE------GHRTCPKTGQMLVHDRLVP 343
++ CPI L+L+ +P+ + G + R I +E G +CP G + L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70
Query: 344 NRALRNLI 351
N+ L N++
Sbjct: 71 NQHLANIV 78
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPN 344
++ CPI L+L+ P+ + G ++ + + ++ G +CP + + PN
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77
Query: 345 RALRNLI 351
R + N++
Sbjct: 78 RHVANIV 84
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 8e-06
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP---------KTGQMLVH 338
+ + C +++R P G Y +A + G + C + +L
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87
Query: 339 DRLVPNRALRNLIVQ---WCTAHG 359
P+ A R + C + G
Sbjct: 88 SSAFPDNAARREVESLPAVCPSDG 111
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV-PNRALR 348
K C I ++ DPV S + R I R ++ CP L P ++
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 81
Query: 349 NLI 351
N++
Sbjct: 82 NIL 84
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-05
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP 330
++ + C ++ P G + +A + C
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCT 54
|
| >4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 5e-05
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 270 KKRRKGLITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTC 329
K++ + + ++ + + C I + + V ++ ++ I WM+ C
Sbjct: 43 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIEC 101
Query: 330 P 330
P
Sbjct: 102 P 102
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 282 AETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCP 330
+ + ++ CPI LD+++ PV I G + + I + E G CP
Sbjct: 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 9e-05
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344
C I L PV + + + G R C Q + D L
Sbjct: 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPEDFLDSG 67
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCP 330
++ CPI LD+++ PV I G + + I + E G CP
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 290 KDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALR 348
K C +++R+PV + + ++ + G CP L NR L
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG---CPVCYTPAWIQDLKINRQLD 77
Query: 349 NLI 351
++I
Sbjct: 78 SMI 80
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWME--EGHRTCP 330
++ + C + L+ +++PVII G + + I RW E E CP
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344
+ C I + D I+ T+ + I R CPK ++ + +
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 32/264 (12%), Positives = 79/264 (29%), Gaps = 38/264 (14%)
Query: 422 KENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK 481
N +I + I L+ + +P ++ V + N++ ++ ++G + I++
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA-QQGAVKIILE 505
Query: 482 VLRFG------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKK 535
L + L + +KK A+ L LL TP
Sbjct: 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK--YSALNAIPFLFELLPRSTPVDDN 563
Query: 536 --------------DAVTALFNLSTHTDNCVR------MIEAGAVTALVGAL--GHEGVA 573
+A+ AL NL++ + + + + + + +
Sbjct: 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623
Query: 574 EEAAGALALIVRQPIGAAAVGEEEMAVTG------LVGMMRCGTPRGKENAVAALLELCR 627
++ ++ P+ AA LV +++ + A +
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA- 682
Query: 628 SGGASATERVLKAPALVGLLQALL 651
+ + +L L+ +
Sbjct: 683 TTIPLIAKELLTKKELIENAIQVF 706
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 8e-04
Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 24/186 (12%)
Query: 504 AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTAL 563
+ + +K + + L + +P K+ V ++N++ + ++ + GAV +
Sbjct: 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKII 503
Query: 564 VGALG-----HEGVAEEAAGALA--LIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKE 616
+ L E + AL LI P A+ L ++ TP
Sbjct: 504 LEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563
Query: 617 NAVA-----------ALLELCRSGGASATER------VLKAPALVGLLQALLFTGTKRAR 659
ALL L + ++ ++ ++ L+ +
Sbjct: 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623
Query: 660 RKAASL 665
R L
Sbjct: 624 RSTLEL 629
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.95 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.94 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.94 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.94 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.92 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.91 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.9 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.9 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.9 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.89 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.89 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.88 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.88 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.88 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.88 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.85 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.85 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.79 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.79 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.77 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.76 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.76 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.75 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.75 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.73 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.72 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.62 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.54 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.47 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.43 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.38 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.38 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.37 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.33 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.32 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.31 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.28 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.27 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.27 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.26 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.26 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.24 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.24 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.24 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.23 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.23 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.23 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.23 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.2 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.16 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.15 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.15 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.13 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.13 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.12 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.11 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.1 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.09 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.04 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 99.03 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 99.02 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 99.01 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.0 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.98 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.98 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.97 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.95 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.94 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.9 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.8 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.8 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.8 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.78 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.78 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.76 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.76 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.76 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.75 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.73 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.72 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.71 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.7 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.68 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.64 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.63 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.61 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.61 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.59 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.55 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.55 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.54 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.51 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.4 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.38 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.36 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.32 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.31 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.27 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.26 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.26 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.24 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.18 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.14 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.13 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.13 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.1 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.06 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.04 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.03 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.97 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.97 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.95 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.92 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.91 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.84 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.83 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.81 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.71 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.61 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.6 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.57 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.56 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.54 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.41 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.36 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.32 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 97.2 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.15 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.12 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.98 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.97 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.77 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 96.72 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.52 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.02 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.77 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.33 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.63 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.49 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 94.33 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 94.23 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.2 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.02 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.97 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 93.48 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 92.85 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 92.49 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.39 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 92.22 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 92.06 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 91.77 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.64 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 90.57 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.81 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 88.21 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 88.18 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 87.91 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 86.93 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 86.62 | |
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 86.57 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 86.3 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 85.38 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 85.33 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 85.23 | |
| 1vdy_A | 140 | Hypothetical protein (RAFL09-17-B18); structural g | 81.34 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 80.7 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 80.58 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=272.24 Aligned_cols=265 Identities=22% Similarity=0.265 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhhcCch-hhhhhhhh
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLSIYDK-NKSRIMDE 472 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~ 472 (715)
..+.+|++.|.+++.+ +++|..|++.|++++|+.+|.. .++.+|.+|+++|.||+.+++ +|..|...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999975 8999999999999999999953 247899999999999998775 78888624
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhc-CC
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLST-HT 548 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~-~~ 548 (715)
.|+|+.|+.+|+++ +.++++.|+++|.+|+.. +++|..|++ .|+||.|+++| ..+++..++.|+.+|+||+. ++
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 66799999999998 999999999999999985 568999998 99999999975 55778999999999999999 66
Q ss_pred ccHHHHH-HhCChHHHHHhhCC--h----hHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHH
Q 038217 549 DNCVRMI-EAGAVTALVGALGH--E----GVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKEN 617 (715)
Q Consensus 549 ~n~~~iv-~aG~v~~Lv~lL~~--~----~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~ 617 (715)
+|+..++ ..|+++.|+.+|.+ + .+++.|+++|.||+. .++++..+.+.|+ ++.|+++|++++...++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-HHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC-HHHHHHHHcCCChHHHHH
Confidence 8999998 78999999999962 2 489999999999985 7889999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~~ 675 (715)
|+++|++|+..+ ++.+..+.+ .|+++.|+.|+.++++++++.|.+.|..|....+.
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999765 566777877 99999999999999999999999999888865443
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=278.31 Aligned_cols=280 Identities=21% Similarity=0.202 Sum_probs=241.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC--chhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY--DKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~--~~nk~ 467 (715)
+.++.||..|.+++.+.|..|++.|++++..++++|..|++.|+||+||.+|++++..+|++|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3689999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh------------------cC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR------------------LG 529 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~------------------~~ 529 (715)
.|+ +.|+|++|+.+|+++.+.+++++|+++|++||.++++|..|+. ++|+.|++++. ..
T Consensus 128 ~I~-~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 128 AIK-NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHH-HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHH-HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccc
Confidence 999 9999999999999854889999999999999999999999996 46999999872 12
Q ss_pred ChhHHHHHHHHHHHhhcCCc-cHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC-------------
Q 038217 530 TPRGKKDAVTALFNLSTHTD-NCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ------------- 586 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~-n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~------------- 586 (715)
++.++++|+.+|+||+.+.+ +|..|++. |+++.|+.+|+ +...++.|+++|+||+..
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 46889999999999999775 58889886 56789999984 347899999999999864
Q ss_pred -------------cchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCHH--HHHHHHhcCCcHHHHHHH
Q 038217 587 -------------PIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGAS--ATERVLKAPALVGLLQAL 650 (715)
Q Consensus 587 -------------~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~--~~~~l~~~~g~i~~L~~L 650 (715)
+.|...+.+.++ |+.|+.+|+. .++.++++|+++|++||.+.... ..+..+...|+++.|+.|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~-v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEV-VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp -----------CCCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hcccccccccccCchhHHHHhcccH-HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 123334445555 7889999964 67999999999999999876332 122333437889999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhh
Q 038217 651 LFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 651 l~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+.++++.+++.|.++|+.|....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999998754
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=276.92 Aligned_cols=279 Identities=21% Similarity=0.222 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I 469 (715)
.++.||..|++++++.|..|++.|++++.+++.++..+.+.|+||.|+.+|+++++.+|..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999988888898999999999999999999999999999999999987 7899999
Q ss_pred hhhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh--------cC--------Chh
Q 038217 470 MDEEGCLGSIVKVLR-FGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR--------LG--------TPR 532 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~--------~~--------~~~ 532 (715)
+ +.|+|+.|+.+|+ ++ +.++++.|+++|++|+..++++..|++ |++|.|+++|. ++ ++.
T Consensus 83 ~-~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 83 R-RQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp H-HTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred H-HcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9 9999999999999 66 899999999999999999889998886 99999999993 22 345
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC-----------------
Q 038217 533 GKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ----------------- 586 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~----------------- 586 (715)
..++|+++|+|||.+++++..++++ |+++.|+.+|. +..+++.|+.+|.+|+..
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 6669999999999998899999998 99999999995 347889999999999731
Q ss_pred ----------------------------------cchHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCCH
Q 038217 587 ----------------------------------PIGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 587 ----------------------------------~e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
+++.+.+++.++ ++.|+.+|.+ .++..++.|+++|++||.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA-IRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch-HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 234455666777 8999998886 4689999999999999987643
Q ss_pred H---HHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 632 S---ATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 632 ~---~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
. ..+.++...|+++.|+.++.+++.++++.|.++|+.+....+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 213444448999999999999999999999999999987543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=269.90 Aligned_cols=261 Identities=22% Similarity=0.266 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhhcCch-hhhhhhhhcC
Q 038217 407 KTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLSIYDK-NKSRIMDEEG 474 (715)
Q Consensus 407 ~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g 474 (715)
+++|++.|.+++. ++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ +|..+....|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4599999999986 48999999999999999999952 346789999999999998775 6777752467
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccC--chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhc-CCcc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAV--HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLST-HTDN 550 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~-~~~n 550 (715)
+|+.|+.+|+++ +.++++.|+++|.+|+.. +++|..|++ .|+|+.|+++| ..+++..++.|+.+|+||+. +++|
T Consensus 244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 799999999998 999999999999999985 568899988 99999999975 55678999999999999999 7789
Q ss_pred HHHHH-HhCChHHHHHhhCC--h----hHHHHHHHHHHHHhC----CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHH
Q 038217 551 CVRMI-EAGAVTALVGALGH--E----GVAEEAAGALALIVR----QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAV 619 (715)
Q Consensus 551 ~~~iv-~aG~v~~Lv~lL~~--~----~~~~~al~~L~~La~----~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~ 619 (715)
+..++ .+|+++.|+.+|.+ + .+++.|+++|.||+. +++++..+.+.|+ ++.|+.+|++++...++.|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~-i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc-HHHHHHHHcCCChHHHHHHH
Confidence 99998 78999999999962 2 489999999999984 7889999999999 99999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
++|++|+..+ ++.+..+.+ .|+++.|+.++.++++++++.|.+.|+.|....
T Consensus 401 ~aL~nLa~~~-~~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSC-HHHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999765 566777877 899999999999999999999999998887654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=260.81 Aligned_cols=281 Identities=16% Similarity=0.167 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
..+.++.|+..|++++++.|..|++.|++++..++++|..|++.|+||.|+++|+ +++++++++|+++|.||+.++++|
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 3468999999999999999999999999999988999999999999999999999 889999999999999999998899
Q ss_pred hhhhhhcCcHHHHHHHHh--------cC-------CCHHHHHHHHHHHHHhccCchhHHHHhccc-CcHHHHHHHhhcC-
Q 038217 467 SRIMDEEGCLGSIVKVLR--------FG-------LTTEARENAAATLFSLSAVHEYKKKIADES-GAVEALATLLRLG- 529 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~--------~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~-g~I~~Lv~LL~~~- 529 (715)
..|+ + |+++.|+.+|. ++ .+.++..+|+++|++|+.+++++..+.+ . |+++.|+.+|+++
T Consensus 122 ~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 122 EELI-A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCV 198 (457)
T ss_dssp HHHH-H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHH
T ss_pred HHHH-h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhc
Confidence 9999 8 99999999993 22 1345666999999999999889999988 6 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 038217 530 -------------------------------------------------------------------------------- 529 (715)
Q Consensus 530 -------------------------------------------------------------------------------- 529 (715)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------ChhHHHHHHHHHHHhhcCCcc------HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHH
Q 038217 530 ------------------TPRGKKDAVTALFNLSTHTDN------CVRMIEAGAVTALVGALG--HEGVAEEAAGALALI 583 (715)
Q Consensus 530 ------------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~L 583 (715)
++..++.|+++|.||+..... +..+.++|++|.|+++|. +.+++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 123455678899999875432 222336899999999996 679999999999999
Q ss_pred hCCcchHHHHhhhCCcHHHHHHHhhcCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CH
Q 038217 584 VRQPIGAAAVGEEEMAVTGLVGMMRCGT------PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TK 656 (715)
Q Consensus 584 a~~~e~~~~i~~~g~~I~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~ 656 (715)
+.+++.+..|.+ ++ +++|+++|..++ ++....++.+|.++...++ +....+.+ .|+++.|+.|+.++ ++
T Consensus 359 s~~~~~~~~i~~-~~-i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~-~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFS-SSMLNNIINLCRSSASP 434 (457)
T ss_dssp HTSGGGHHHHHH-HT-HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCC-HHHHHHHHHHHHCTTCH
T ss_pred hcCHHHHHHHHH-hh-hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHH-cCCHHHHHHHHcCCCcH
Confidence 998888776654 67 999999999864 3577899999999998774 45556665 89999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038217 657 RARRKAASLARVFQRCENA 675 (715)
Q Consensus 657 ~~k~~A~~lL~~l~~~~~~ 675 (715)
+++++|.++|..++.+.+.
T Consensus 435 ~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHHcchhh
Confidence 9999999999988765543
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=255.72 Aligned_cols=243 Identities=19% Similarity=0.167 Sum_probs=216.1
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----------GSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAM 456 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL 456 (715)
.+.++.|+..|.+ .+++.|..|++.|+++++.++.+|..+... |+||.|+.+|++++.+++++|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888888852 246789999999999999888899988755 6699999999999999999999999
Q ss_pred hhhhcC--chhhhhhhhhcCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCCh-
Q 038217 457 LNLSIY--DKNKSRIMDEEGCLGSIVKVL-RFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGTP- 531 (715)
Q Consensus 457 ~nLs~~--~~nk~~I~~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~~- 531 (715)
.||+.. +++|..|+ +.|+|+.|+.+| +++ +.++++.|+.+|++||. .++++..|+...|+|+.|+++|..+++
T Consensus 152 ~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLR-EVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 999985 47899999 999999999986 455 88999999999999999 668999998448999999999987654
Q ss_pred ---hHHHHHHHHHHHhhc----CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHH
Q 038217 532 ---RGKKDAVTALFNLST----HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVT 601 (715)
Q Consensus 532 ---~~~~~A~~aL~nLs~----~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~ 601 (715)
..++.|+.+|+||+. +++++..++++|+++.|+.+|. +..+++.|+++|.||+. +++++..+.+.|+ |+
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-i~ 308 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA-VS 308 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-HH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-HH
Confidence 489999999999996 7789999999999999999996 56899999999999995 6889999999999 99
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHH
Q 038217 602 GLVGMMRCGTPRGKENAVAALLELCRSGGASAT 634 (715)
Q Consensus 602 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 634 (715)
.|++++++++++.++.|+.+|.+|+.+.+..+.
T Consensus 309 ~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 999999999999999999999999999876544
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=261.16 Aligned_cols=281 Identities=18% Similarity=0.206 Sum_probs=233.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKT-GKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.|+.||..|.+++.+.|..|++.|++++.. +++||..|++.|+||+|+.+|++ .+.+++++|+.+|+||+.++++|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 46899999999999999999999999999985 68999999999999999999997 68899999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHh---cC--------------CCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLR---FG--------------LTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~---~~--------------~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
..|+ . |+++.|+++|. +| .+.+++++|+++|++||..++ ++..|.+..|+|+.|+.++++
T Consensus 169 ~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 169 MEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999 5 57999999872 11 146899999999999998775 588888756777788877653
Q ss_pred ------CC--------------------------------------------------------------------hhHH
Q 038217 529 ------GT--------------------------------------------------------------------PRGK 534 (715)
Q Consensus 529 ------~~--------------------------------------------------------------------~~~~ 534 (715)
.+ +.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 12 2334
Q ss_pred HHHHHHHHHhhcCC-----ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHh
Q 038217 535 KDAVTALFNLSTHT-----DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM 607 (715)
Q Consensus 535 ~~A~~aL~nLs~~~-----~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL 607 (715)
+.|+++|.|||... .++..+.+.|+++.|+.+|. +..++..|+++|.||+.++.++..| ..|+ |+.||.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~-ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHA-IPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHH-HHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCC-HHHHHHHh
Confidence 45555666665432 12223345688999999995 6799999999999999988888777 6677 99999999
Q ss_pred hcC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHHhhhh
Q 038217 608 RCG--------TPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 608 ~~~--------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~~~~~ 675 (715)
.++ +......|+++|.||+..+ ....+.+.. .|+++.|+.|+.++ .+.+++.|+.+|..|+.+.+.
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 876 4678899999999999887 556667777 99999999999987 899999999999999876544
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=254.01 Aligned_cols=243 Identities=19% Similarity=0.152 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHH
Q 038217 389 RATAELLIQQLAN-----------GSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAM 456 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL 456 (715)
.+.++.|+..|.+ .+...+..|++.|.+++..++.++..+... |+||.|+.+|.+++.+++++|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3578888888842 246679999999999999888888888754 6699999999999999999999999
Q ss_pred hhhhcC--chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCCh--
Q 038217 457 LNLSIY--DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGTP-- 531 (715)
Q Consensus 457 ~nLs~~--~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~~-- 531 (715)
.||+.. +++|..|+ +.|+|+.|+.+|.+..+.++++.|+.+|++|+. .++++..|+...|+|+.|+++|..+++
T Consensus 268 ~nLs~~~~~~~k~~I~-~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLR-EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHTSSCCHHHHHHHH-HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHhcCCCHHHHHHHH-HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 999985 46899999 999999999986543388999999999999999 778999998548999999999987654
Q ss_pred --hHHHHHHHHHHHhhc----CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHH
Q 038217 532 --RGKKDAVTALFNLST----HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTG 602 (715)
Q Consensus 532 --~~~~~A~~aL~nLs~----~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~ 602 (715)
..++.|+++|+||+. +++++..++++|+++.|+.+|. +..+++.|+++|.||+. +++++..|++.|+ |+.
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-I~~ 425 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA-VSM 425 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH-HHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHH
Confidence 489999999999995 7789999999999999999996 56899999999999994 7889999999999 999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhcCCHHH
Q 038217 603 LVGMMRCGTPRGKENAVAALLELCRSGGASA 633 (715)
Q Consensus 603 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~ 633 (715)
|++++++++++.++.|+.+|.+|+.+++.++
T Consensus 426 Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 426 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 9999999999999999999999999876554
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=248.01 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=239.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.|.|+.||+.|+ +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|++++.++++.|+++|.||+.+. .++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999997 567899999999999999999999999999999999999999999999999999999999876 446
Q ss_pred hhhhhhcCcHHHHHHHHh-----------------------------------------------cCCCHHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLR-----------------------------------------------FGLTTEARENAAATL 499 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~-----------------------------------------------~~~~~e~~~~Aa~~L 499 (715)
..+. ..|++++|+.+|. ++ +.+++..|+++|
T Consensus 179 ~~v~-~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL 256 (510)
T 3ul1_B 179 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI 256 (510)
T ss_dssp HHHH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHH-HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 6666 7777777776653 22 567778888999
Q ss_pred HHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHH
Q 038217 500 FSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEA 576 (715)
Q Consensus 500 ~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~a 576 (715)
.+|+....++..+....|+++.|+.+|.+++...+..|+.+|.|++... .++..+++.|+++.|+.+|+ +..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9998877665554444899999999999999999999999999998755 46777889999999999996 56899999
Q ss_pred HHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCC
Q 038217 577 AGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGT 655 (715)
Q Consensus 577 l~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~ 655 (715)
+++|.||+.. ++.+..+.+.|+ ++.|+.++.+++...|..|+++|.+++.++..+....+.+ .|+++.|+.++.+.+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCC
Confidence 9999999875 557777888888 9999999999999999999999999999876677778888 999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038217 656 KRARRKAASLARVFQ 670 (715)
Q Consensus 656 ~~~k~~A~~lL~~l~ 670 (715)
+.+...+...|..+-
T Consensus 415 ~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 415 TKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887665543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=259.06 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=243.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----------------------------hhH---HHHHHcCCh
Q 038217 387 ANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-----------------------------ENR---AFIAKAGAI 434 (715)
Q Consensus 387 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-----------------------------~~r---~~i~~~G~i 434 (715)
...+.++.||..|++++...+..|++.|.|++...+ .++ ..++++|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 456899999999999999999999999999997542 233 678899999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD 514 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~ 514 (715)
|.|+.+|+++++.+|++|+++|.|++.+++++..++ +.|++++|+.+|+++ +...+++|+++|.+|+...+....+..
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv-~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVV-QEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 999999999999999999999999999989999999 999999999999999 899999999999999875443333211
Q ss_pred --ccCcHHHHHHHhhcCCh-hHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 515 --ESGAVEALATLLRLGTP-RGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 515 --~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
..|+||+|+.+|..+.. ..+..|+++|.||+..+ +++..++++|+++.|+.+|. ++.++..|+.+|.||+.+++
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 14699999999986533 44578999999999875 68999999999999999994 56899999999999999988
Q ss_pred hHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 589 GAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 589 ~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.+..+.. .|+ ++.|+.++.+.+...|+.|+++|.+|+.++ +...+.+....|+++.|+.|+.+++..++..|.+.+.
T Consensus 656 ~~~~~v~~~g~-l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 656 VIKMFEGNNDR-VKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHSSSSH-HHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCc-HHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888885 455 999999999999999999999999999965 4455566654799999999999999999999998887
Q ss_pred HHHH
Q 038217 668 VFQR 671 (715)
Q Consensus 668 ~l~~ 671 (715)
.+..
T Consensus 734 NL~~ 737 (810)
T 3now_A 734 NMIN 737 (810)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=259.14 Aligned_cols=282 Identities=16% Similarity=0.164 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
.|.++.|+..|++++++.|.+|++.|.+++. ++++|..+++.|++|+|+.+|.+++..++++|+++|.||+.+.++...
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 3789999999999999999999999999995 578999999999999999999999999999999999999876554333
Q ss_pred hhh--hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 469 IMD--EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 469 I~~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
+.. ..|++++|+.+|.++.+...+..|+.+|.||+.. ++++..|.+ .|+++.|+.+|.++++.+++.|+++|+||+
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 210 2479999999998753555667899999999987 468888888 899999999999999999999999999999
Q ss_pred cCCccHHHHHH-hCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 546 THTDNCVRMIE-AGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 546 ~~~~n~~~iv~-aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
.+++++..++. .|+++.|+.+++ +..++..|+++|+||+. +++....+++ .|+ ++.|+.++.+++.+.|+.|++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~-I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW-LDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH-HHHHHHHHTCSSHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHCCCCHHHHHHHHH
Confidence 99999999886 799999999996 66999999999999998 6778888888 677 999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHHhhhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTG---TKRARRKAASLARVFQRCENA 675 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~---~~~~k~~A~~lL~~l~~~~~~ 675 (715)
+|.|++.++ .+....+.+ .|++++|..+++.. +.++.+.|...|+.+-++..-
T Consensus 731 aL~NL~~~s-~e~~~~l~e-~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 731 IILNMINAG-EEIAKKLFE-TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTTC-HHHHHHHHT-STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC-HHHHHHHHH-CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 999999865 566778887 99999999998654 789999999999988876543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=248.58 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=246.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.|.|+.||..|. +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+. +++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 468999999997 567999999999999999999999999999999999999999999999999999999999875 668
Q ss_pred hhhhhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 467 SRIMDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
..++ ..|++++|+.+|.... ......+++++|.+++.+......+....|++|.|++++.+++++++.+|+++|.
T Consensus 198 ~~i~-~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 198 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHH-HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHH-HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 8888 9999999999997641 3457889999999999877655555444789999999999999999999999999
Q ss_pred HhhcCCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 543 NLSTHTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 543 nLs~~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
+|+..+.++ ..++..|+++.|+.+|. +..++..++.+|.||+.. ++.+..+.+.|+ ++.|+.++.++++..++.|
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGHHHHTTCSSHHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhccc-HHHHHHHHcCCCHHHHHHH
Confidence 999877654 45678899999999996 668999999999999875 557778889888 9999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 619 VAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 619 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++|.+|+.++ ......+.. .|+++.|+.++.+++..++..|.+.|..+..
T Consensus 356 ~~aL~nl~~~~-~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 356 TWTMSNITAGR-QDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHTSC-HHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-HHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999886 556667777 9999999999999999999999988877754
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-24 Score=241.37 Aligned_cols=281 Identities=19% Similarity=0.177 Sum_probs=247.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcC
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIY 462 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~ 462 (715)
..|.|+.|+..|.+++.+.+..|++.|.+++.+++++|..+.+.|++++|+.+|...+ ..++.+++++|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999999999999999999999999999998654 45788999999999998
Q ss_pred chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 463 DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 463 ~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
..+...+....|+++.|+.+|.++ +.+++..|+++|.+|+...+.+..+....|+++.|+.+|.+++..++..|+.+|.
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 876555443578999999999998 9999999999999999887765554444899999999999999999999999999
Q ss_pred HhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHH
Q 038217 543 NLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 543 nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
||+... .++..+++.|+++.|+.+|. ++.++..|+++|.||+.. ++.+..+.+.|+ ++.|+.++.+++...+..|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCc-HHHHHHHhcCCCHHHHHHH
Confidence 998754 47778899999999999996 568999999999999875 456677888887 9999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 619 VAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 619 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
+++|.+++.++..+....+.+ .|++++|+.|+.+.++.+...+...|..+-.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999998776667777888 9999999999999999999888876655543
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=216.76 Aligned_cols=236 Identities=27% Similarity=0.324 Sum_probs=218.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I 469 (715)
.++.|+..|.+++++.+..|++.|.+++..+++++..+.+.|+++.|+.+|++++..++..|+++|.+++.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 588999999999999999999999999998888999999999999999999999999999999999999998 6778999
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhc-cCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLS-AVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
. +.|+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++..+..|+.+|.||+...
T Consensus 83 ~-~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 83 V-DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp H-HTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999988 9999999999999999 56678888888 899999999999999999999999999999855
Q ss_pred c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 549 D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 549 ~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
+ ++..+++.|+++.|+.+|. ++.++..++++|.+|+. .++.+..+.+.|+ ++.|++++.++++..++.|+.+|.+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG-VEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 4 5678899999999999996 56999999999999998 4567778888888 9999999999999999999999999
Q ss_pred HHhcCC
Q 038217 625 LCRSGG 630 (715)
Q Consensus 625 L~~~~~ 630 (715)
|+...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 998764
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=240.19 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=235.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAK-TGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
.++.+|..|.|++.+.|.+|+..+|++.. +...-...+++.|+||.||.+|++ +++.+|..|+++|.|++.+. +++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58899999999999999999999998763 322346788999999999999975 56899999999999997654 6788
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCC-----hhHHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGT-----PRGKKDAVTAL 541 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~-----~~~~~~A~~aL 541 (715)
.++ +.|+|+.|+.+|+++ +.++++.|+++|.+|+.+.+ ++..+.. .|+++.|+.++...+ ......++++|
T Consensus 138 ~vv-~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 138 AVV-DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHH-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 888 999999999999998 99999999999999998754 6666776 999999999998654 24678899999
Q ss_pred HHhhcCCccHHHH-HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHHHHhhcCChHHHHH
Q 038217 542 FNLSTHTDNCVRM-IEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLVGMMRCGTPRGKEN 617 (715)
Q Consensus 542 ~nLs~~~~n~~~i-v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~ 617 (715)
.|++.+..+...+ ...|++|.|+.+|. +++++..++++|.+|+..+..+ ..+.+.|+ ++.|++++.+++...+..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC-HHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhccc-chhhhhhhcCCChhhhhH
Confidence 9999877654443 44689999999996 6799999999999999876544 55677777 999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 618 AVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 618 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|+.+|++++..+ +.....+.. .|+++.|+.++.++++.+++.|.++|..+..
T Consensus 294 al~aL~nl~~~~-~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 294 ALRAIGNIVTGT-DEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCC-HHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999887 556667777 9999999999999999999999998888764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=219.06 Aligned_cols=233 Identities=24% Similarity=0.288 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~I 469 (715)
..+.++..|.+++++.+..|++.|+++...+++++..+.+.|++|.|+.+|.++++.++..|+++|.+++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46788999999999999999999987666678899999999999999999999999999999999999998 45778889
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
+ +.|+++.|+.+|+++ +.+++..|+++|.+|+..++++ ..+.. .|+++.|+++|.++++..+..|+.+|.||+...
T Consensus 93 ~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 93 I-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp H-HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999998 9999999999999999999988 77777 999999999999999999999999999999854
Q ss_pred -ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 549 -DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 549 -~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
+++..+++.|+++.|+.+|. ++.++..|+++|.+|+. .++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc-HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57777889999999999996 56899999999999986 4667888888888 9999999999999999999999999
Q ss_pred HHh
Q 038217 625 LCR 627 (715)
Q Consensus 625 L~~ 627 (715)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 875
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=234.61 Aligned_cols=279 Identities=21% Similarity=0.194 Sum_probs=247.8
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|+..|.+++ ++.+..|++.|.+++..+++++..+++.|++|.|+.+|.+++..+++.|+++|.||+.+. .++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 358999999999876 999999999999999988999999999999999999999999999999999999999875 558
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..+. ..|+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++|.+|+.
T Consensus 196 ~~i~-~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 196 DLVL-ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHH-HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHH-HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 8888 8999999999995444899999999999999987654444444 7999999999999999999999999999998
Q ss_pred CCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcC-ChHHHHHHHHH
Q 038217 547 HTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCG-TPRGKENAVAA 621 (715)
Q Consensus 547 ~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke~A~~~ 621 (715)
...++ ..+++.|+++.|+.+|. ++.++..|+++|.+|+.. +.....+.+.|+ ++.|+.+|.++ ++..+..|+++
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA-LPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhh-HHHHHHHHcCCCcHHHHHHHHHH
Confidence 77655 56778999999999996 568999999999999884 557777888888 99999999998 99999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+|+.++ ......+.. .|+++.|+.++.++++.++..|.++|..+...
T Consensus 353 L~nl~~~~-~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGN-KDQIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999865 555667777 89999999999999999999999988888765
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=230.19 Aligned_cols=276 Identities=17% Similarity=0.184 Sum_probs=244.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCC-HHHHHHHHHHHhhhhcC-chhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHN-PVAQENSVTAMLNLSIY-DKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d-~~~~~~A~~aL~nLs~~-~~nk 466 (715)
..++.|+..|.+++++.+..|++.|++++.... .+...+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999976554 67888999999999999999876 99999999999999987 5678
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nL 544 (715)
..++ ..|+++.|+.+|.++ +.++++.|+++|.+|+... .++..+.. .|+++.|+.+| ...++..+..|+++|.||
T Consensus 154 ~~~~-~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 154 KVVI-DHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHH-hCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888 899999999999997 9999999999999999764 46777777 89999999999 556789999999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
+....+....+..|+++.|+.+|. ++.++..++++|.+|+..+..+ ..+.+.|+ ++.|+.+|.++++..+..|+.+
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~-v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC-HHHHHHHTTCSCHHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH-HHHHHHHHcCCChhHHHHHHHH
Confidence 988666566667899999999996 6799999999999999876654 56777788 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~ 671 (715)
|.+|+.+. +.....+.. .|+++.|+.++.++ ++.++..|.++|..+..
T Consensus 310 L~nl~~~~-~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 310 VGNIVTGD-DAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHTTSC-HHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-HHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999876 456667777 99999999999999 99999999999888875
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=207.19 Aligned_cols=237 Identities=24% Similarity=0.299 Sum_probs=215.6
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~ 509 (715)
|+||.|+.+|.+++++++..|+.+|.+++.... ++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIV-DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHH
Confidence 679999999999999999999999999988774 788898 999999999999998 899999999999999998 7788
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh-cCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS-THTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..+.. .|+++.|+.++.++++..+..|+.+|.||+ ..++++..+++.|+++.|+.+|. ++.++..++++|.+|+..
T Consensus 80 ~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88887 999999999999999999999999999999 56778999999999999999996 568999999999999985
Q ss_pred cc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 PI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 ~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
.+ .+..+.+.|+ ++.|+.++.++++..+..|+.+|.+++..+ +.....+.. .|+++.|+.++.++++.+++.|.++
T Consensus 159 ~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 159 PDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp CHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCcC-HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 44 5577888787 999999999999999999999999999865 556667777 9999999999999999999999999
Q ss_pred HHHHHHhhh
Q 038217 666 ARVFQRCEN 674 (715)
Q Consensus 666 L~~l~~~~~ 674 (715)
|..|.....
T Consensus 236 L~~l~~~~~ 244 (252)
T 4hxt_A 236 LENIKSGGW 244 (252)
T ss_dssp HHHHHHTCB
T ss_pred HHHHHcCCC
Confidence 999887543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-24 Score=213.37 Aligned_cols=195 Identities=21% Similarity=0.187 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhc-Cchh
Q 038217 389 RATAELLIQQLANGSP--RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~--~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~n 465 (715)
.++++.||+.|.++++ +.|..|++.|+++++.++.+|..|.+.|+||+||.+|+++++++|+.|+++|.||+. +++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3578999999999987 889999999999999999999999999999999999999999999999999999998 4689
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh---cC-------------
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR---LG------------- 529 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~---~~------------- 529 (715)
|..|+ +.|+|++|+++|++..+.+++++|+++|++||..+++|..|+. ++|++|+.++. .|
T Consensus 87 k~~I~-~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVA-ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccc
Confidence 99999 9999999999998532899999999999999999999999987 47999998763 12
Q ss_pred ChhHHHHHHHHHHHhhcC-CccHHHHHHh-CChHHHHHhhC--------ChhHHHHHHHHHHHHhCC
Q 038217 530 TPRGKKDAVTALFNLSTH-TDNCVRMIEA-GAVTALVGALG--------HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~-~~n~~~iv~a-G~v~~Lv~lL~--------~~~~~~~al~~L~~La~~ 586 (715)
++.++.+|+.+|+||+.. +++|..|.+. |+|+.|+.+++ +...++.|+.+|+||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 458899999999999985 5899999987 67899999995 347899999999999864
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=225.92 Aligned_cols=278 Identities=17% Similarity=0.131 Sum_probs=246.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|+..|.++ +++.+..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.+++.+. .++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35789999999987 8999999999999999988899999999999999999999999999999999999999875 668
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..+. ..|+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++++.++..|+++|.+|+
T Consensus 209 ~~~~-~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 209 DYVL-QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHH-HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 8888 899999999999986 8999999999999999765 44444444 799999999999988999999999999999
Q ss_pred cCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 THT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
... +....+++.|+++.|+.+|. +..++..|+.+|.+|+.. ++....+.+.|+ ++.|+.+|.++++..++.|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch-HHHHHHHHcCCCHHHHHHHHHH
Confidence 764 46777888999999999996 568999999999999875 456667788777 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+++.++ ......+.. .|+++.|+.++.++++.++..|.+.|..+...
T Consensus 365 L~~l~~~~-~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 365 ISNITAGN-TEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHTTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999876 445566776 89999999999999999999999988887653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=210.12 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=173.9
Q ss_pred ChHHHHHhhccCCH--HHHHHHHHHHhhhhc-CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Cchh
Q 038217 433 AIPHLRNLLSTHNP--VAQENSVTAMLNLSI-YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEY 508 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~--~~~~~A~~aL~nLs~-~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~ 508 (715)
.+|.||.+|.++++ ++|..|+++|.+|+. ++++|..|. +.|+||+||.+|+++ +.++++.|+++|++|+. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999888 899999999999996 557899999 999999999999998 99999999999999998 5789
Q ss_pred HHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC------------------C
Q 038217 509 KKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG------------------H 569 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~------------------~ 569 (715)
+..|++ .|+||.|+++|.+ ++...++.|+.+|+||+..+++|..+++. ++++|+.++. +
T Consensus 87 k~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999 9999999999984 78899999999999999999999999875 6999998762 3
Q ss_pred hhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcC------ChHHHHHHHHHHHHHHhc
Q 038217 570 EGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCG------TPRGKENAVAALLELCRS 628 (715)
Q Consensus 570 ~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~ 628 (715)
..+.++|.++|.||+. ++++|.+|.+.+|+|+.|+.+++.+ +.+.+|+|+.+|+|||.+
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 4899999999999988 4689999999888799999999873 568899999999999976
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=216.35 Aligned_cols=276 Identities=19% Similarity=0.148 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 390 ATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
+.++.|+..|+++ +++.+..|++.|.+++..++++...+.+.|++|.|+.+|+++++.+++.|+++|.+++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5789999999988 8999999999999999888888888999999999999999999999999999999999876 5688
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-h-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-E-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
.++ ..|+++.|+.+|++..+.+++..|+++|.+|+... . .+..+ . .++++.|++++.++++..+..|+++|.+|+
T Consensus 144 ~~~-~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVL-DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHH-HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHH-HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 888 89999999999996448999999999999999764 2 22222 2 689999999999989999999999999999
Q ss_pred cCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc-hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 THT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI-GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e-~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
... +++..++..|+++.|+.+|. +..++..|+++|.+|+...+ ....+.+.|+ ++.|+.++.++++..+..|+.+
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA-LQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCcc-HHHHHHHHcCCCHHHHHHHHHH
Confidence 864 56777888999999999996 56899999999999988654 4556777777 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+++.+. +.....+.. .|+++.|+.++.++++.++..|.++|..+..
T Consensus 300 L~~l~~~~-~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 300 ISNITAGN-RAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHTTSC-HHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 99999866 455566777 8999999999999999999999998888764
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=220.51 Aligned_cols=279 Identities=19% Similarity=0.182 Sum_probs=246.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~ 467 (715)
.+.++.|+..|.+++++.+..|++.|.+++..++.++..+...|+++.|+.+|.+.+..++..|+++|.+|+.+. .+..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 467899999999999999999999999999988899999999999999999999999999999999999999876 5555
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
... ..|+++.|+.+|.++ +.+++..|+++|.+|+...+ ....+.. .|+++.|+.+|.++++..+..|+.+|.||+.
T Consensus 252 ~~~-~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 252 WSV-VSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHH-HGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 555 689999999999988 89999999999999997654 5566666 8999999999998889999999999999997
Q ss_pred CCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 547 HTD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 547 ~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
..+ ....+++.|+++.|+.+|. +..++..|+++|.+|+. .++....+++.|+ ++.|+.+|.++++..+..|+.+|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL-IPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 644 5666788999999999997 56899999999999986 4556777888888 99999999999999999999999
Q ss_pred HHHHhcCCH--HHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 623 LELCRSGGA--SATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 623 ~~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.+++..+.. .....+.. .|+++.|+.++.++++.++..|...|..+-..
T Consensus 408 ~~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999987644 56667777 89999999999999999999998877766554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=213.94 Aligned_cols=279 Identities=18% Similarity=0.196 Sum_probs=243.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc--hh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD--KN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~--~n 465 (715)
.+.++.|+..|++++++.+..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3588999999999999999999999999999888999999999999999999996 78999999999999999765 33
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
+..++ .|+++.|+.+|.++ +.+++..|+++|.+|+... +....+.. .|+++.|+.++.++++..+..|+.+|.||
T Consensus 186 ~~~~~--~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 186 EFAKV--SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp CGGGT--GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 33443 79999999999988 8999999999999999865 45666666 89999999999988899999999999999
Q ss_pred hcCCcc-HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHH
Q 038217 545 STHTDN-CVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVA 620 (715)
Q Consensus 545 s~~~~n-~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~ 620 (715)
+...+. ...+++.|+++.|+.+|. ++.++..|+++|.+|+. +++....+.+.|+ ++.|+.++.++++..|..|+.
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI-FPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHH
Confidence 987654 455778899999999997 56899999999999986 5567777888887 999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
+|.+++.++.......+.. .|+++.|+.++.+++++++..|...|..+....
T Consensus 341 ~L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999998744555666776 899999999999999999999998777776543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=204.82 Aligned_cols=233 Identities=21% Similarity=0.260 Sum_probs=210.4
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhh-hcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNL-SIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nL-s~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 509 (715)
...+.++.+|.++|++++..|+.+|.++ +.+++++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+. .++++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 5689999999999999999999999765 55667788888 999999999999998 89999999999999998 56788
Q ss_pred HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 510 KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..+.. .|+++.|+.+|.++++..+..|+.+|.||+.+++++ ..+++.|+++.|+.+|. +..++..++++|.+|+..
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 88888 899999999999999999999999999999999988 88999999999999996 568999999999999985
Q ss_pred -cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Q 038217 587 -PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASL 665 (715)
Q Consensus 587 -~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~l 665 (715)
++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+|+..+ +.....+.+ .|+++.|+.++.++++.+++.|.++
T Consensus 169 ~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 169 GNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp CHHHHHHHHHTTC-HHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred ChHHHHHHHHCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 456677788888 999999999999999999999999999765 556667777 8999999999999999999999998
Q ss_pred HHHHH
Q 038217 666 ARVFQ 670 (715)
Q Consensus 666 L~~l~ 670 (715)
|..|.
T Consensus 246 L~~l~ 250 (252)
T 4db8_A 246 LEKLQ 250 (252)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=219.52 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=240.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|++.|.++ +++.+..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+++|.||+.++ +++
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46899999999754 899999999999999975 679999999999999999999999999999999999999875 557
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC-chhHHHHhcccCcHHHHHHHhhcCCh-hHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV-HEYKKKIADESGAVEALATLLRLGTP-RGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~I~~~~g~I~~Lv~LL~~~~~-~~~~~A~~aL~nL 544 (715)
..+. +.|+++.|+.+|+++ +.+.+..++.+|.+|+.. ++++..++. .|+++.|++++++++. .....++.+|+||
T Consensus 137 ~~i~-~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 137 MAVR-LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHH-HHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 7887 899999999999998 899999999999999974 678888888 8999999999988664 5667789999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+++++..+++.|+++.|+.++. ++.++..++++|.+|+....... ...+. ++.|++++.+.++..++.|+++|
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~-i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGL-LGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhH-HHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999996 56899999999999998643322 22355 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTG--TKRARRKAASLARVFQR 671 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~ 671 (715)
.+|+.++ +..+..+.+ .|+++.|+.++.+. .+.++..|..+|..+..
T Consensus 291 ~~L~~~~-~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 291 SNLTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHTTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHhcCC-HHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 9999876 456677777 89999999999863 47889999988888754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=221.75 Aligned_cols=273 Identities=17% Similarity=0.125 Sum_probs=242.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|+++++..+..|+..|.+++.+ +.++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 45799999999999999999999999999965 5677777754 9999999999764 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. +.|+++.|+.+|+++ +.+++..|+++|.+|+..+ ..+..+.+ .|+++.|++++.+++.+.+..++.+|.||+
T Consensus 95 ~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 95 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999 899999999999998 8999999999999999875 46666766 899999999999988899999999999999
Q ss_pred cC-CccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 TH-TDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~-~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
.. ++++..+++.|+++.|+.+|+ +......+..+|.+|+.+++++..+.+.|+ ++.|+.++.++++..++.|+++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhCCChHHHHHHHHH
Confidence 74 678999999999999999995 347788899999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+||...+... .. .|+++.|+.++.++++.++..|.++|..|..
T Consensus 251 L~~l~~~~~~~~----~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 251 LRNLSDAATKQE----GM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHTTCTTCS----CC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCChhhH----HH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 999998763211 12 4689999999999999999999988888765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=223.83 Aligned_cols=274 Identities=19% Similarity=0.160 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|++.|.++ +.+.+..|+..|++++.. ++++..+.+.|+++.|+.+|+++++.++..|+++|.||+.+. .++
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 46789999999865 899999999999999975 679999999999999999999999999999999999998875 557
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nL 544 (715)
..+. +.|+++.|+.+|+++ +.+.+..++.+|.+|+. +++++..+++ .|+++.|++++++++ ...+..++.+|+||
T Consensus 134 ~~v~-~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 134 MAVR-LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp HHHH-HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 7777 899999999999998 88888888999999996 6789999998 899999999998765 56788999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+++++..+++.|+++.|+.++. +..++..++++|.+|+...... ....+. ++.|+.++.+.++..++.|+++|
T Consensus 211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~-i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGL-LGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhH-HHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999996 5689999999999998753221 122355 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTG-T-KRARRKAASLARVFQR 671 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~-~~~k~~A~~lL~~l~~ 671 (715)
.+|+.++ ...+..+.+ .|+++.|+.++.+. + +.++..|..+|..|..
T Consensus 288 ~~L~~~~-~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 288 SNLTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCC-HHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 9999876 456667777 89999999999874 3 7899999988888853
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=226.05 Aligned_cols=274 Identities=17% Similarity=0.121 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|+++++.++..|+..|.+++.++ .++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 457899999999999999999999999999765 577777754 8999999999875 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. +.|+++.|+.+|+++ +.+++..|+.+|.+|+... ..+..+.. .|+++.|+++|++++++.+..++.+|.+|+
T Consensus 92 ~~i~-~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 92 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHH-TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 9999 889999999999998 8999999999999999875 45666666 899999999999988888888999999999
Q ss_pred c-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 T-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
. +++++..+++.|+++.|+.+|+ .+.++..++.+|.+|+.+++++..+++.|+ ++.|+.++.+++...++.|+++
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~-l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH-HHHHHTTTTCSCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHH
Confidence 6 6779999999999999999996 347888999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|.+||...+.. ... .|+++.|+.++.++++.++..|.++|..|...
T Consensus 248 L~nL~~~~~~~----~~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 248 LRNLSDAATKQ----EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHGGGCTTC----CSC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcchhh----hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999875321 111 36899999999999999999999988877653
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=222.71 Aligned_cols=270 Identities=21% Similarity=0.182 Sum_probs=226.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.++..|.+++.+.+..++..|+.. ++..+. .|+||.|+.+|.++++.++++|+.+|.+|+.+..++..++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 578899999999988888888887743 333444 8999999999999999999999999999999988888887
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-c
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-D 549 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~ 549 (715)
...|+++.|+.+|+++.+.+++.+|+.+|++|+..++++..|+. .|+|+.|+++|+++++.++..|+++|.||+... .
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 34589999999998765899999999999999999999999998 899999999999999999999999999999874 5
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCCh-HHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTP-RGKENAVAALLEL 625 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~-~~ke~A~~~L~~L 625 (715)
++..+++.|+|+.|+.+|. +..+...++.+|.+|+. +++++..+.+.++ ++.|+.+++++++ ..++.|+.+|++|
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~-i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-HHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC-HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6666778999999999996 55788889999999986 5789999999888 9999999998654 4577899999999
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
|... ..+..+.. .|+++.|+.++.++++..++.|.++|..|...
T Consensus 347 s~~~--~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 347 SVCS--SNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HTST--THHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hcCh--HHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 9763 45667777 89999999999999999999998888877643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=184.05 Aligned_cols=193 Identities=24% Similarity=0.304 Sum_probs=176.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~ 468 (715)
+..+.|+..|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+++|.|++.+ ++++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4567889999999999999999999999988899999999999999999999999999999999999999964 577888
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
++ +.|+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.+ .|+++.|++++.++++..+..|+.+|.||+..
T Consensus 92 i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH-HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH-HCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88 999999999999998 99999999999999996554 5566776 89999999999999999999999999999987
Q ss_pred -CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 548 -TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 548 -~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
++++..+++.|+++.|+.++. ++.+++.|+.+|.+|++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 668888999999999999996 67999999999999985
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=183.90 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=174.9
Q ss_pred HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Cch
Q 038217 430 KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHE 507 (715)
Q Consensus 430 ~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~ 507 (715)
..|+.+.|+.+|.++|+.++..|+++|.+++.. ++++..++ +.|+++.|+.+|+++ +.+++..|+++|.+|+. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 468899999999999999999999999999954 56788888 999999999999998 99999999999999995 566
Q ss_pred hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 508 YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 508 ~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
++..+.+ .|+++.|+.+|.++++..+..|+++|.||+... +++..+++.|+++.|+.+|. +..++..|+++|.+|+
T Consensus 88 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8888887 999999999999999999999999999999754 46677889999999999996 6689999999999999
Q ss_pred CC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 585 RQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 585 ~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
.. ++.+..+.+.|+ ++.|+.++.++++..++.|+.+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCC-HHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 86 678888888888 9999999999999999999999999985
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=213.02 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=234.6
Q ss_pred hHHHhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-
Q 038217 383 AAVEANRATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGK-------------------------------------E- 423 (715)
Q Consensus 383 ~~~~~~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~-------------------------------------~- 423 (715)
.....+.+.+..|+..+++ .+......++..|.|++...+ +
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 3444567788999999984 666677888888888775322 1
Q ss_pred hHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 038217 424 NRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE---ARENAAATLF 500 (715)
Q Consensus 424 ~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~ 500 (715)
++..+.++|+||.|+.+++++++.+++.|+++|.||+.+.++|..++ +.|++++|+.+|.++ +.. .+.+|+.+|.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lv-qqGal~~LL~lL~s~-~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA-QQGAVKIILEYLANK-QDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHH-HTTHHHHHHHHTTCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcC-CCcchHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999 999999999999987 433 8999999999
Q ss_pred HhccCchhHHHHhc--ccCcHHHHHHHhhc--CCh------------hHHHHHHHHHHHhhcCCc-----cHHHHHHh-C
Q 038217 501 SLSAVHEYKKKIAD--ESGAVEALATLLRL--GTP------------RGKKDAVTALFNLSTHTD-----NCVRMIEA-G 558 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~--~~g~I~~Lv~LL~~--~~~------------~~~~~A~~aL~nLs~~~~-----n~~~iv~a-G 558 (715)
+|+...+....+.. ..|+|++|+.||.. +.. ..+..|+.+|.||+..++ .+.++++. |
T Consensus 527 rLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 99876655555532 14999999999973 211 127799999999999874 37889985 9
Q ss_pred ChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhC------CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 559 AVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEE------MAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 559 ~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g------~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
+++.|..+|. +..++..|+.+++||+.++++. ..+...+ + ++.||.++++++.+.|+.|+++|.+++...
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r-L~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN-FNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH-HHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc-HHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999995 5689999999999999988886 4554322 3 789999999999999999999999997665
Q ss_pred CHHHHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHHHh
Q 038217 630 GASATERVLKAPALVGLLQALLFT--GTKRARRKAASLARVFQRC 672 (715)
Q Consensus 630 ~~~~~~~l~~~~g~i~~L~~Ll~s--~~~~~k~~A~~lL~~l~~~ 672 (715)
+..++.+.+..++++.|+.++++ +++..+..+..++..|...
T Consensus 686 -~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 -PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 56677777745799999999999 8999999998888888753
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=220.19 Aligned_cols=273 Identities=17% Similarity=0.130 Sum_probs=242.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccC-CHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTH-NPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~-d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.+.++.|+..|.+.+..+|..|+..|.+++.. ..++..+.+. |+++.|+.+|.++ ++.++.+|+.+|.+|+.+.+++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 56899999999999999999999999999975 5677777754 8999999999865 8999999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|. ..|+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.. .|+++.|+++|.+++...+..|+.+|.+|+
T Consensus 228 ~~i~-~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 228 LAIF-KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9998 889999999999998 89999999999999998754 5556656 899999999999888889999999999999
Q ss_pred c-CCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 T-HTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~-~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
. +++++..+++.|+++.|+.+|+ .....+.++.+|.+|+.+++++..+++.|+ ++.|+.++.+++...++.|+++
T Consensus 305 ~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~-l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 305 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTH-HHHHGGGTTCSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhch-HHHHHHHHcCCchHHHHHHHHH
Confidence 6 5679999999999999999997 246778899999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
|.+||...... ... .++++.|+.++.+.++.++..|.++|..|..
T Consensus 384 L~~L~~~~~~~----~~~-~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 384 LRNLSDAATKQ----EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHTTCTTC----SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHhccchhh----hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999876321 112 4689999999999999999999998888765
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-20 Score=175.96 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
..+|++|.||||+++|.|||+++|||+|||.||.+|+..++.+||.|+.++....++||..|+++|+.|+..||+.+
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 56899999999999999999999999999999999999855589999999999999999999999999999999864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-18 Score=195.02 Aligned_cols=274 Identities=12% Similarity=0.111 Sum_probs=227.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCch----
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDK---- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~---- 464 (715)
.+..+++.|..++.+.+..|++.|..++. +++.|..+++. |+++.|+.+|++ .+..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 66788888888787789999999999996 58999999876 779999999995 788899999999999987432
Q ss_pred -----------------------------------hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH
Q 038217 465 -----------------------------------NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK 509 (715)
Q Consensus 465 -----------------------------------nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 509 (715)
++..+. +.|+++.|+.+++++ +...++.|+++|.+||.++++|
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~-eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL-RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTT-TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH-HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 345556 899999999999998 9999999999999999999999
Q ss_pred HHHhcccCcHHHHHHHhhcCChh---HHHHHHHHHHHhhcCCccHHHHH---HhCChHHHHHhhC-Chh-----------
Q 038217 510 KKIADESGAVEALATLLRLGTPR---GKKDAVTALFNLSTHTDNCVRMI---EAGAVTALVGALG-HEG----------- 571 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv---~aG~v~~Lv~lL~-~~~----------- 571 (715)
..+++ .|+++.|+.++.+++.. ++..|+.+|.+|....+....+- ..|+|++|+.+|. ++.
T Consensus 492 ~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 492 PQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999 99999999999887644 89999999999997655443321 1389999999997 222
Q ss_pred ---H-HHHHHHHHHHHhCCc-----chHHHHhhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHH-HHHHhc
Q 038217 572 ---V-AEEAAGALALIVRQP-----IGAAAVGEE-EMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASAT-ERVLKA 640 (715)
Q Consensus 572 ---~-~~~al~~L~~La~~~-----e~~~~i~~~-g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~-~~l~~~ 640 (715)
+ +..|+.+|.|||..+ +.+..|+++ |+ ++.|.++|.+++...|+.|+.++.||+.+. ... +.+...
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga-~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~ 647 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY-WSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNL 647 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH-HHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCC
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH-HHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhh
Confidence 1 668999999999976 347878885 77 999999999999999999999999999864 222 233221
Q ss_pred C-----CcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 641 P-----ALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 641 ~-----g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
. +-++.|+.|+.+++...++.|.++|.++..
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 1 137899999999999999999999999853
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=171.55 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHH
Q 038217 404 PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVK 481 (715)
Q Consensus 404 ~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~ 481 (715)
.+.+..|+..|..++. +.+|...|.+.|++|+|+. +|.++++.+++.|+++|.|++.++ ..+..++ +.|++++|+.
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv-~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL-GLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHH
Confidence 4678999999999996 5789999999999999999 999999999999999999999876 5688888 9999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC
Q 038217 482 VLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA 559 (715)
Q Consensus 482 lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~ 559 (715)
+|+++.+.+++..|+++|.+|+.+.. ....+.. .|+++.|+.+|++++..+++.|+++|.+|+. .++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99965478999999999999987554 5666777 8999999999999999999999999999987 4668899999999
Q ss_pred hHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 560 VTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 560 v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
++.|+.+|. +..+++.++.+|.+|+..
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999996 669999999999999876
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=150.76 Aligned_cols=75 Identities=32% Similarity=0.503 Sum_probs=70.5
Q ss_pred cCCCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 284 TFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 284 ~~~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
....+|++|.||||+++|.|||+++|||+|||.||++|+.. +.+||.|++++....+.||..++++|+.|+.+++
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 33678999999999999999999999999999999999996 7899999999999999999999999999998875
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=173.58 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCCcccchHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHhhhhhccCCCCChH
Q 038217 122 SISGHFHDLNQEISTLLDVF----PADDIELSEDVREQIDLMQRQARNAKLHIDKNDELLRLRLFSFLDEFEHGRVPNHV 197 (715)
Q Consensus 122 ~i~~~f~~~~~~l~~~L~~l----p~~~l~~s~ev~e~v~~~~~q~~~~~~~~d~~d~~l~~~l~~~l~~~~~~~~~d~~ 197 (715)
.++..++.+.+++..+|++| +....++++.|++.-+ .-+++...+.+.+..+..+.....++.++.+.....+.+
T Consensus 29 d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~-~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~~ 107 (267)
T 3htk_C 29 DLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITS-TYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLS 107 (267)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 34444555555555555554 3344556777766433 334455555666677777777777787777888899999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCccchhhHhhHHHHHhhhhccccccccchhhhccccccccccccc
Q 038217 198 DLRSFFVEGLGIKDAKTCRAEIEFLEEQIVNHEGDAEPTASVLNGFVAIMRYSRFLLFGFEEDEAELGIGSHKKRRKGLI 277 (715)
Q Consensus 198 ~l~~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 277 (715)
.|.+++..++.+++..++..|..... ....-........++.++..+......+.+...+.++.+
T Consensus 108 twd~y~~~e~~ap~l~~~~~~~~~~~---~~~~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~dDDD------------ 172 (267)
T 3htk_C 108 TWDKYRTGELTAPKLSELYLNMPTPE---PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDD------------ 172 (267)
T ss_dssp HHHHHHHTSSCCCCHHHHHHTCCCCS---CCSCCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTCSSC------------
T ss_pred HHHHHhcCCcCCchHHHHHHhccccC---cccccccchHHHHHHHccccccCCCCCCCCCCCCCCCcc------------
Confidence 99999999899999888766431000 000001122344556666666655554433211011111
Q ss_pred hhhhcccCCCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCC--CccccccCCCCccHHHHHHHHH
Q 038217 278 TQEIAETFLSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPK--TGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 278 ~~~~~~~~~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
. .......+|.||||+++|.|||+. .|||+|||.||.+||.. |...||. |++.+...++.||..|+++++.
T Consensus 173 ----I-~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 173 ----L-QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp ----C-CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred ----c-eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 1 234567799999999999999985 99999999999999986 4578999 9999999999999999999998
Q ss_pred HHHh
Q 038217 354 WCTA 357 (715)
Q Consensus 354 ~~~~ 357 (715)
|..+
T Consensus 248 ~k~r 251 (267)
T 3htk_C 248 AKMK 251 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-19 Score=152.17 Aligned_cols=76 Identities=32% Similarity=0.504 Sum_probs=71.9
Q ss_pred CCCCCCCCcCccCcccccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
...+|++|.||||+++|.|||+++|| |+|||.||++||.. +.+||.|++++....++||..|+++|+.|+.++++.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 35789999999999999999999999 99999999999987 789999999999999999999999999999999864
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-19 Score=153.68 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=70.8
Q ss_pred CCCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
...+|++|.||||+++|.|||+++|||+|||.||.+||.. +.+||.|++++....+.||..++++|+.|+.+|+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999985 78999999999999999999999999999998874
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=165.40 Aligned_cols=221 Identities=17% Similarity=0.153 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHH
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEAL 522 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~L 522 (715)
+.+.+..|+..|.+++.+.+|+..++ ..|+++.|+. +|+++ +.++++.|+++|.+++.+++ .+..+.+ .|+++.|
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~-~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~L 129 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHH-HcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHH
Confidence 35678889999999999889999998 9999999999 99998 99999999999999998654 6777777 8999999
Q ss_pred HHHhhcC-ChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHhhhC
Q 038217 523 ATLLRLG-TPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVGEEE 597 (715)
Q Consensus 523 v~LL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~~~g 597 (715)
+.+|.++ +...++.|+++|.||+.+. .+...++++|+++.|+.+|+ +..++..|+++|.+|+. .++.+..+++.|
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g 209 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 9999864 6789999999999999755 45677889999999999995 67999999999999987 577889999998
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CCcHHHH---HHHhh-cC-CHHHHHHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA-PALVGLL---QALLF-TG-TKRARRKAASLARVFQ 670 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L---~~Ll~-s~-~~~~k~~A~~lL~~l~ 670 (715)
+ ++.|+.+|.++++..++.|+.+|.+|+... .......... ..+...| .+-++ .. .....++|..++..+-
T Consensus 210 ~-i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 210 M-VQQLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp H-HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHcCCChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 8 999999999999999999999999999885 3333333221 1122222 22233 22 3566677666666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=173.15 Aligned_cols=77 Identities=31% Similarity=0.565 Sum_probs=72.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++....++||..++++|++|+.+|++.+
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 67899999999999999999999999999999999999877779999999999999999999999999999999864
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=142.12 Aligned_cols=75 Identities=53% Similarity=1.111 Sum_probs=71.6
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++....+.||..++++|++|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999999998789999999999988999999999999999999986
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=136.80 Aligned_cols=74 Identities=28% Similarity=0.499 Sum_probs=65.7
Q ss_pred CCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHhC-----CCCCCC--Cccc-cccCCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEEG-----HRTCPK--TGQM-LVHDRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~~-----~~~CP~--c~~~-l~~~~l~pn~~l~~~i~~~~~~ 357 (715)
..+++|.||||+++|.|||+++ |||+|||.||.+||..+ ..+||. |+.. +...++.||..|+.+|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3577999999999999999995 99999999999999863 469999 6655 8888999999999999999988
Q ss_pred cCC
Q 038217 358 HGI 360 (715)
Q Consensus 358 ~~~ 360 (715)
++-
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 763
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-15 Score=126.16 Aligned_cols=76 Identities=30% Similarity=0.499 Sum_probs=68.9
Q ss_pred CCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHh-CCCCCCCCcccc-ccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEE-GHRTCPKTGQML-VHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~-~~~~CP~c~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
..+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++++ ....+.+|..++++++.|...++..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 57889999999999999999998 9999999999999976 457999999997 5668999999999999999987754
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-12 Score=141.56 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=214.5
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchh-
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKN- 465 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~n- 465 (715)
.+|+.|+.+|+ +.-.+.|+.|+..|+.++++ ++.. +..++++.|+..|+. .|.++...++.+|+++...++.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 48999999998 45688999999999999865 3333 446899999999976 5889999999999987443211
Q ss_pred -----------------hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHh
Q 038217 466 -----------------KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLL 526 (715)
Q Consensus 466 -----------------k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL 526 (715)
...+..+.+.|+.|+.+|+.. +...|.+++.+|..|+.+.. ++..|...+++|+.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 123333678999999999988 99999999999999986554 6888887689999999999
Q ss_pred hcCChhHHHHHHHHHHHhhcCCccHHHHHHh-CChHHHHHhhCC------hhHHHHHHHHHHHHhCCc-chHHHHhhhCC
Q 038217 527 RLGTPRGKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGALGH------EGVAEEAAGALALIVRQP-IGAAAVGEEEM 598 (715)
Q Consensus 527 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~v~~Lv~lL~~------~~~~~~al~~L~~La~~~-e~~~~i~~~g~ 598 (715)
.+..+..+-.|+.+|.+|+.+..+.++++.. |+++.|+.++.. +.++..|+.+|.||.... .++..+.+.|.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9888889999999999999999988888876 999999999952 267899999999998854 47777777777
Q ss_pred cHHHHHHHhhcCCh------HHHHH---HHHHHHHHHhcCCH-----HHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHH
Q 038217 599 AVTGLVGMMRCGTP------RGKEN---AVAALLELCRSGGA-----SATERVLKAPALVGLLQALLFTG--TKRARRKA 662 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~~~~-----~~~~~l~~~~g~i~~L~~Ll~s~--~~~~k~~A 662 (715)
++.|..++..+.+ ..-.+ ++.++..|+..++. ..+.++.+ .|++..|+.++.+. ...++..|
T Consensus 256 -i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 256 -IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp -GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred -HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHH
Confidence 9999999875432 12233 66677777776432 35667777 99999999998765 55666666
Q ss_pred HHHHHHH
Q 038217 663 ASLARVF 669 (715)
Q Consensus 663 ~~lL~~l 669 (715)
...+--+
T Consensus 334 l~tla~~ 340 (651)
T 3grl_A 334 INTVSEV 340 (651)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-14 Score=128.39 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc-CCCCccHHHHHHHHHHHHh
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH-DRLVPNRALRNLIVQWCTA 357 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~-~~l~pn~~l~~~i~~~~~~ 357 (715)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3556899999999999999999999999999999999767799999999987 6799999999999988744
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-13 Score=129.00 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=64.3
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC-CCCccHHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD-RLVPNRALRNLIVQWCT 356 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~-~l~pn~~l~~~i~~~~~ 356 (715)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35668999999999999999999999999999999998777999999999887 89999999999998864
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=130.87 Aligned_cols=278 Identities=14% Similarity=0.081 Sum_probs=213.7
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChh-----------------hHHHH-HHcCChHHHHHhhccCCHHH
Q 038217 389 RATAELLIQQLAN--GSPRAKTVAAREIRLLAKTGKE-----------------NRAFI-AKAGAIPHLRNLLSTHNPVA 448 (715)
Q Consensus 389 ~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~~-----------------~r~~i-~~~G~i~~Lv~lL~s~d~~~ 448 (715)
..+++.|+..|+. .+.+....++..|.++...+++ +...+ .+.+.|+.|+.+|.+.|..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4578899999975 4788888899999887654432 11222 34589999999999999999
Q ss_pred HHHHHHHHhhhhcCch--hhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh
Q 038217 449 QENSVTAMLNLSIYDK--NKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526 (715)
Q Consensus 449 ~~~A~~aL~nLs~~~~--nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL 526 (715)
+.+++..|..|+.+.. +++.|....++|+.|+.+|+.. ...+|..|+.+|.+|+....+-.+++...|+++.|++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 9999999999987663 5788885679999999999987 888999999999999999998888888689999999999
Q ss_pred hcCCh----hHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC-C-------hhHHH---HHHHHHHHHhCC----
Q 038217 527 RLGTP----RGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG-H-------EGVAE---EAAGALALIVRQ---- 586 (715)
Q Consensus 527 ~~~~~----~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~-~-------~~~~~---~al~~L~~La~~---- 586 (715)
..+.. .+..+++.+|.||..+. .|+..+.+.|+++.|..+|. + +.... .++.++..|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 86432 56889999999999865 59999999999999999995 1 11223 367777777653
Q ss_pred ---cchHHHHhhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHhc--------CCcHHHHHHHhhc
Q 038217 587 ---PIGAAAVGEEEMAVTGLVGMMRCG--TPRGKENAVAALLELCRSGGASATERVLKA--------PALVGLLQALLFT 653 (715)
Q Consensus 587 ---~e~~~~i~~~g~~I~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--------~g~i~~L~~Ll~s 653 (715)
..++.++.+.|+ ++.|++++... +..++..|+.++..+.+++ ...+..+.+. .-++..|+.++.+
T Consensus 298 ~~t~~nQ~~~~~~g~-l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 298 GATSSCQKAMFQCGL-LQQLCTILMATGVPADILTETINTVSEVIRGC-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp HHHHHHHHHHHHTTH-HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHCCC-HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 135678888888 99999988764 6788999999999999887 4555565541 1145555666655
Q ss_pred C-CHHHHHHHHHHHHHH
Q 038217 654 G-TKRARRKAASLARVF 669 (715)
Q Consensus 654 ~-~~~~k~~A~~lL~~l 669 (715)
. ....|-.|...++-+
T Consensus 376 ~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 5 455555555555544
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=108.35 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=49.8
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 345 (715)
.|.||||+++|.|||+. +|||+|||.||++|+.. +.+||.|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999987 56799999999999999875
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-13 Score=117.39 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=65.5
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcC
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHG 359 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 359 (715)
.+++++.||||++.|.+|+++ +|||+||+.||.+|+.. ..+||.|+.++....+.+|..++++++.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 356689999999999999988 89999999999999986 6899999999988889999999999999987654
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-13 Score=117.41 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=64.2
Q ss_pred CCCCCCcCccCcccccCcee-CCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 287 SIPKDFCCPIMLDLMRDPVI-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~-~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
.+.+++.||||+++|.+||+ ++|||+||+.||.+|+..+...||.|+.++....+.+|..+..+++....-.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 46678999999999999999 8999999999999999986689999999999999999999988877765443
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-13 Score=155.07 Aligned_cols=75 Identities=27% Similarity=0.455 Sum_probs=70.8
Q ss_pred CCCCCCCCcCccCcccccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
..++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.++++++...++||..||..|++||.+++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999997 79999999999988 77999999999999999999999999999998874
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-12 Score=116.13 Aligned_cols=68 Identities=13% Similarity=0.369 Sum_probs=61.3
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC----CCCccHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD----RLVPNRALRNLIVQWC 355 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~~~~ 355 (715)
.+++++.||||+++|.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456799999999999999998 99999999999999987 58999999998765 6889999999998765
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-12 Score=116.98 Aligned_cols=70 Identities=20% Similarity=0.493 Sum_probs=64.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
..+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++..|.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4678899999999999999999999999999999999986679999999999988999999999887653
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-13 Score=112.40 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=57.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-----CCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 567889999999999999999999999999999999987 36799999999988888888766543
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=108.49 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=54.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
....+++.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++++. ..+.+|..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~ 72 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK 72 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence 456678999999999999999999999999999999987 789999999986 567788665443
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-13 Score=115.06 Aligned_cols=65 Identities=26% Similarity=0.543 Sum_probs=57.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhC------CCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG------HRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~------~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 5678899999999999999999999999999999999863 6799999999988888888766543
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-13 Score=118.10 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=62.6
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc-------CCCCccHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH-------DRLVPNRALRNLIVQWC 355 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~-------~~l~pn~~l~~~i~~~~ 355 (715)
....+++.||||++++.+||+++|||+||+.||.+|+..+...||.|++++.. ..+.+|..+..++.+|.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34567899999999999999999999999999999998878899999999864 56788999999998875
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-12 Score=101.98 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|++++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 46788999999999999999999999999999999997667899999998876543
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-12 Score=102.68 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=52.7
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
..+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 5678899999999999999998 99999999999999987 7899999999988777655
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-12 Score=123.44 Aligned_cols=71 Identities=23% Similarity=0.478 Sum_probs=62.8
Q ss_pred CCCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccc-cCCCCccHHHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLV-HDRLVPNRALRNLIVQWCT 356 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~~ 356 (715)
..+.+++.||||++.|.+||++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..++.+|..|..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4567789999999999999988 999999999999999987899999999984 4568999999999998854
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-12 Score=103.93 Aligned_cols=60 Identities=33% Similarity=0.481 Sum_probs=50.4
Q ss_pred CCCCCCCCcCccCcccccCceeCC-CccHhhHHHHHHHHHh-CCCCCCCCcccccc-CCCCcc
Q 038217 285 FLSIPKDFCCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEE-GHRTCPKTGQMLVH-DRLVPN 344 (715)
Q Consensus 285 ~~~~~~~~~CpIc~~lm~dPv~~~-cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~-~~l~pn 344 (715)
...+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++++.. ..+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 357888999999999999999998 9999999999999986 34799999997543 334444
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.5e-13 Score=111.11 Aligned_cols=65 Identities=22% Similarity=0.581 Sum_probs=57.9
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh-----CCCCCCCCccccccCCCCccHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE-----GHRTCPKTGQMLVHDRLVPNRALRNL 350 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 350 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 567889999999999999999999999999999999986 46899999999998888888766543
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-12 Score=117.15 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=62.9
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhc
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAH 358 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 358 (715)
.+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++....+.+|..+++++..+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 456799999999999999999 9999999999999987 78999999998889999999999999886554
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-12 Score=117.51 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=53.8
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
.+++.||||++.|.+||+++|||+||+.||.+|+.. ..+||.|++++... .+|..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 347899999999999999999999999999999987 78999999988543 34666666666665
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-12 Score=111.82 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhC--CCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG--HRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
+.+++.||||++.+.+|++++|||+||+.||.+|+..+ ...||.|+.++....+.+|..+..+++.+.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 34578999999999999999999999999999999863 368999999999888888876666655554
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=100.23 Aligned_cols=56 Identities=25% Similarity=0.553 Sum_probs=49.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c~~~l~~~~l 341 (715)
..+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 567889999999999999999999999999999999973 56799999998876543
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=97.93 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=49.1
Q ss_pred CCCcCccCcc-cccCc----eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 290 KDFCCPIMLD-LMRDP----VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 290 ~~~~CpIc~~-lm~dP----v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4789999999 99999 4679999999999999998877899999999988777664
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-11 Score=95.43 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=43.2
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKT 332 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c 332 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 567889999999999999999999999999999999985 46789987
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-12 Score=116.06 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=58.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc---------cCCCCccHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV---------HDRLVPNRALRNLIVQ 353 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~---------~~~l~pn~~l~~~i~~ 353 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++. ...+.|+..++..|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 4578899999999999999999999999999999999987779999998643 2346688888877764
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-11 Score=116.94 Aligned_cols=69 Identities=20% Similarity=0.504 Sum_probs=63.3
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHH
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQW 354 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 354 (715)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+...|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 468889999999999999999999999999999999998667999999999988899999998887754
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-11 Score=109.59 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=57.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC-ccHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV-PNRALRNLIVQW 354 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~-pn~~l~~~i~~~ 354 (715)
++++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+..++.++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 35568999999999999999999999999999999998778999999999877765 456666665443
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-11 Score=98.41 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=51.7
Q ss_pred CCCCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccH
Q 038217 286 LSIPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 345 (715)
....+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++...++.+++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 3456789999999999998 88899999999999999988 67999999999888877653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-09 Score=102.92 Aligned_cols=187 Identities=22% Similarity=0.196 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...++.|+..|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3478899999999999999999999877542 367999999999999999999999998764
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
..++++.|+..|++. +..+|..|+.+|..+.. .++++.|+.++.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 356789999999887 99999999999988743 5689999999998999999999999998843
Q ss_pred ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
..+++.|+.+++ ++.++..++.+|..+.. ... ++.|..++.+.++.+|..|..+|..+.
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 257889999997 55899999999999842 234 788999999999999999999999887
Q ss_pred hcCC
Q 038217 627 RSGG 630 (715)
Q Consensus 627 ~~~~ 630 (715)
...+
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=99.14 Aligned_cols=182 Identities=23% Similarity=0.211 Sum_probs=154.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
...+.++..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 467899999999999999999999876552 367899999999999999999999997763
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
..++++.|+..|.+. +..+|..|+.+|..+.. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 74 --~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred --CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 346789999999887 99999999999987642 5689999999998889999999999988853
Q ss_pred cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
.++++.|+.++. ++.++..|+.+|..+.. ... ++.|..++.+.++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 457889999997 45899999999998831 234 889999999899999999999987653
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=97.52 Aligned_cols=54 Identities=17% Similarity=0.423 Sum_probs=48.7
Q ss_pred CCCCCCCcCccCcccccC----ceeCCCccHhhHHHHHHHHHhC--CCCCCCCccccccC
Q 038217 286 LSIPKDFCCPIMLDLMRD----PVIISTGQTYDRRSIARWMEEG--HRTCPKTGQMLVHD 339 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~~ 339 (715)
..+.+++.||||++.+.+ |++++|||+||+.||.+|+... ...||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 567889999999999999 9999999999999999999974 57999999987654
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=90.31 Aligned_cols=47 Identities=28% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHh--CCCCCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEE--GHRTCPKT 332 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~--~~~~CP~c 332 (715)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467789999999999999999999999999999999875 57899987
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-11 Score=96.83 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
....+++.|+||++.+.+|++++|||+||+.||.+|+.. ...||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 345668999999999999999999999999999999987 58999999987654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-08 Score=104.06 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
....++.|+..|.++++.++..|++.|..+.. .+.++.|+.+|.++++.++..|+.+|.++......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--
Confidence 34578999999999999999999999988751 24688999999999999999999999888643321
Q ss_pred hhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
+ ...++.|.. ++... +..+|..|+.+|..+...... .. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 88 -~---~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 -E---DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp -H---HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred -c---hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1 123344443 34555 889999999999988642211 11 3578899999998889999999999987753
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
.++++.|+.++. ++.++..++.+|..+.... ... ++.|+.++.+.++.+|..|+.+|..
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~-~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDI-RDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHH-HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHH-HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 258999999997 4588899999998874221 133 7889999988889999999998887
Q ss_pred HHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 625 LCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 625 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.. ..+++.|..++.+++ ++..|...|..+
T Consensus 219 ~~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 219 RKD-------------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp TTC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred hCC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 651 234666666666543 555555555444
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-11 Score=93.36 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=48.1
Q ss_pred CCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 290 KDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 290 ~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 478999999999988 77899999999999999998 7899999999987776554
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=92.79 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=47.0
Q ss_pred CCCCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..+++++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 5677899999999999998 88899999999999999998 7899999988754
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-08 Score=97.84 Aligned_cols=185 Identities=23% Similarity=0.185 Sum_probs=153.4
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
.+.++.|+.+|.++++.++..|+.+|..+. ..++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence 467999999999999999999999998753 357899999999987 9999999999998764
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
. .++++.|+++|.+.++.++..|+.+|.++.. .++++.|+.+|. ++.++..++.+|..+..
T Consensus 79 ---~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2 5789999999999999999999999988753 357899999997 55899999999998842
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
... ++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|...|..
T Consensus 142 -------~~~-~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 -------ERA-VEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp -------GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred -------HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235 8999999998899999999999988732 1236678888999999999999998887
Q ss_pred HHHh
Q 038217 669 FQRC 672 (715)
Q Consensus 669 l~~~ 672 (715)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 7654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-08 Score=96.39 Aligned_cols=183 Identities=23% Similarity=0.190 Sum_probs=152.0
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
.+..+.++.+|.++++.++..|+.+|..+. ..++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence 356789999999999999999999998654 346789999999887 9999999999997763
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e 588 (715)
. .++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|. ++.++..++.+|..+..
T Consensus 74 ---~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2 5789999999999889999999999988743 247888999996 55899999999998842
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
... ++.|..++.+.++.+|..|+.+|..+.. + .+++.|..++.++++.++..|...|..
T Consensus 137 -------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 -------ERA-VEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -------GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -------HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345 8999999999999999999999988721 1 136678888899999999999888776
Q ss_pred HH
Q 038217 669 FQ 670 (715)
Q Consensus 669 l~ 670 (715)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 53
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-10 Score=92.62 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCCCCCcCccCcccc--cCceeCC--CccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 286 LSIPKDFCCPIMLDLM--RDPVIIS--TGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm--~dPv~~~--cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
..+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.|++++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4578899999999988 4566665 999999999999998778899999998876544
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-10 Score=92.47 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=49.1
Q ss_pred CCCCCCCcCccCcccccCce---eCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 286 LSIPKDFCCPIMLDLMRDPV---IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv---~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
....+++.|+||++.|.+|. +++|||+||+.||.+|+.. ..+||.|+.++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 45667899999999998773 4599999999999999987 6899999999987766554
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-09 Score=86.49 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=42.5
Q ss_pred CCCcCccCcccccCc-eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 290 KDFCCPIMLDLMRDP-VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 290 ~~~~CpIc~~lm~dP-v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
++..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999998 56799999999999999987 6899999988753
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-08 Score=116.80 Aligned_cols=271 Identities=13% Similarity=0.074 Sum_probs=192.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH----HcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIA----KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~----~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
.++.|+..+.++++..+..++..|..++++.+..-..-. -.+.+|.|+.++++.+..++..|+.+|.++.......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 688999999999999999999999999976443211000 1245778888888899999999999999887543321
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..-. -.+.++.++..+..+ +.++|..|+.+|..|+...... +.. ..+.++.++.++.+.++.++..|+.++.+++
T Consensus 209 ~~~~-~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 209 LMLH-IDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDR--LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHTS-HHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHH--HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 1111 246788888888887 8999999999999998643321 111 1357888888888888899999999999998
Q ss_pred cCCccHHHHH--HhCChHHHHHhh-----------CC-----------h--hHHHHHHHHHHHHhCCcchHHHHhhhCCc
Q 038217 546 THTDNCVRMI--EAGAVTALVGAL-----------GH-----------E--GVAEEAAGALALIVRQPIGAAAVGEEEMA 599 (715)
Q Consensus 546 ~~~~n~~~iv--~aG~v~~Lv~lL-----------~~-----------~--~~~~~al~~L~~La~~~e~~~~i~~~g~~ 599 (715)
.....+..+. -...+|.++..+ .| . .++..+..+|..|+.... ..+.. ..
T Consensus 285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l- 360 (852)
T 4fdd_A 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HI- 360 (852)
T ss_dssp TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HH-
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HH-
Confidence 7654333221 114567777766 22 0 246677778877765321 12222 23
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
++.+.+++.+.+...|+.|+.+|..++.+.++... ... .++++.|+.++.+.+++++..|.+.+..+..+
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-PYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777788888999999999999999987643222 222 35789999999999999999999988877764
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-09 Score=86.49 Aligned_cols=52 Identities=13% Similarity=0.438 Sum_probs=45.5
Q ss_pred CCCCCCCcCccCcccccCceeC---CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 286 LSIPKDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.++.++..|+||++.+.+|..+ +|||.||+.||.+|+.. ..+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4567788999999999887655 99999999999999998 5699999998754
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-07 Score=95.02 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
...++.|+..|.+.++.++..|+..|..+.... .... ..++.|. .++.++++.++..|+.+|.++.....
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--- 123 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP--- 123 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---
Confidence 347889999999999999999999998776321 1100 1233444 24567899999999999999864331
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
.. ...+++.|+..|+++ +..+|..|+.+|..+.. .++++.|+.++.+.++.++..|+.+|.++...
T Consensus 124 -~~-~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 124 -IY-SPKIVEQSQITAFDK-STNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp -GG-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred -cc-cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 11 345688999999887 99999999999987643 46899999999998899999999999888432
Q ss_pred CccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 548 TDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 548 ~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
. ..+++.|+.++. ++.++..++.+|..+. .... ++.|+.++.+. ..+..|+.+|..+
T Consensus 190 ~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~-~~~L~~~l~d~--~vr~~a~~aL~~i 248 (280)
T 1oyz_A 190 N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRV-LSVLCDELKKN--TVYDDIIEAAGEL 248 (280)
T ss_dssp C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGG-HHHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred c--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhh-HHHHHHHhcCc--cHHHHHHHHHHhc
Confidence 2 246788999996 5689999999999885 2345 89999999764 3778888887765
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLA 666 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL 666 (715)
.. ..+++.|..++.+. ++...+.+...|
T Consensus 249 ~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 249 GD-------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp CC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred Cc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 32 13478888888654 556666655444
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=88.62 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=47.1
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
..+.+++.||||++.+.+ ++++|||+||..||.+|+.. ..+||.|++++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 567788999999999999 88899999999999999985 889999999886544
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-09 Score=81.55 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=41.4
Q ss_pred CCCcCccCcccccC----ceeCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRD----PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~d----Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
++..||||++.+.+ +++++|||.||..||.+|+.. ..+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 36789999999976 777899999999999999998 489999998764
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-09 Score=84.11 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCCCCcCccCccccc---CceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 287 SIPKDFCCPIMLDLMR---DPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~---dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
...++..|+||++.+. +++.++|||.||..||.+|+.. +.+||.|+.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4456789999999884 4567899999999999999998 67899999887553
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-09 Score=81.96 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=42.8
Q ss_pred CCCCCcCccCcccccC---ceeCC-CccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 288 IPKDFCCPIMLDLMRD---PVIIS-TGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~d---Pv~~~-cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3567899999999988 77786 9999999999999987 789999998763
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-09 Score=98.67 Aligned_cols=55 Identities=22% Similarity=0.451 Sum_probs=48.5
Q ss_pred CCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 289 PKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
++++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 4689999999999999 88899999999999999987 6799999999887665443
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-09 Score=82.63 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=41.0
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.+++.|+||++.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 457899999999999999999999999999883 6789999988754
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-09 Score=89.83 Aligned_cols=51 Identities=18% Similarity=0.537 Sum_probs=44.4
Q ss_pred CCCCCCcCccCcccccC---ceeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 287 SIPKDFCCPIMLDLMRD---PVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~d---Pv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
...++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34568899999999987 777899999999999999986 6799999988754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=113.55 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=188.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh-
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk- 466 (715)
..++.++..+++.+.++|..|+..|..+....+.. +.. .+.++.|+.++.+++.+++..|+.+|.+++......
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~---~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH---HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 36777888888889999999999998877543321 111 256788888899999999999999999998755322
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhh-----------c------
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLR-----------L------ 528 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~-----------~------ 528 (715)
...+ .+.++.++..++.. +.+++..|+..+..++.....+..+.. ....+|.|+..+. +
T Consensus 251 ~~~l--~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 251 LPHM--HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp GGGH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred HHHH--HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 1112 35788888888876 889999999999999876544433321 1245677777662 2
Q ss_pred -----CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHH
Q 038217 529 -----GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVT 601 (715)
Q Consensus 529 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~ 601 (715)
.+-..++.|+.+|..|+..... .++. .+++.+..++. +..+++.|+.+|.+++........-.-.+. ++
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~-l~ 403 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL-IP 403 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH-HH
T ss_pred cccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HH
Confidence 1123578888888888753321 1111 35667777775 458999999999999874432111112334 88
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 602 GLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 602 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.++..+.+.++.+|..|+.+|..++...+........ .++++.|+..+.+.+++++..|.+.+..+.+.
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8899999899999999999999998753211111111 24678888888888999999999877776643
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.1e-09 Score=85.96 Aligned_cols=50 Identities=12% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCCCcCccCcccccCc---eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDP---VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dP---v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
..++..|+||++.+.++ +.++|||.||..||.+|+.. +.+||.|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999999888 66799999999999999988 6799999988754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-08 Score=113.11 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=146.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccC--chh
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAV--HEY 508 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~ 508 (715)
..|.++++.|++.++..|..|+.+|.||+.+..++..+. ..|+|..++. +|... +.++|..|+++|.+|+.. .+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~-~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLL-REQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHH-HTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHH-HcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchH
Confidence 356667888999999999999999999998888888888 8888887765 56655 999999999999999865 467
Q ss_pred HHHHhcccCcHHHHHHHhhcCC---------------------hhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHh
Q 038217 509 KKKIADESGAVEALATLLRLGT---------------------PRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGA 566 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~---------------------~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~l 566 (715)
+..+.. .|++++|..+++... ......++.+|++||... +....+...|+++.|+.+
T Consensus 112 ~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 788888 899999999985311 123346788999999654 456677888999999999
Q ss_pred hC-----ChhHHHHHHHHHHHHhCC-cchHHHHhhhCC--cHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 567 LG-----HEGVAEEAAGALALIVRQ-PIGAAAVGEEEM--AVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 567 L~-----~~~~~~~al~~L~~La~~-~e~~~~i~~~g~--~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
|. ..++...++.+|..|+.. ++....+.+.+. +...+..+.. ++...+..++++|+|+..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 83 247999999999999885 445566666554 1223333333 455557788899999853
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=90.31 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCCCcCccCcccccCce------------------eCCCccHhhHHHHHHHHHh----CCCCCCCCcccccc
Q 038217 289 PKDFCCPIMLDLMRDPV------------------IISTGQTYDRRSIARWMEE----GHRTCPKTGQMLVH 338 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv------------------~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~~ 338 (715)
+.+..||||++.|.+|+ +++|||.||+.||.+|+.. ...+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34569999999998876 6799999999999999973 36799999987754
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.4e-07 Score=100.75 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=187.0
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhC-hhhHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCch-
Q 038217 391 TAELLIQQLANG--SPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYDK- 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~~- 464 (715)
.++.|+..+.++ ++..+..|+..|..++++. +..-.... ...++.++.+|.+. +..++..|+.++.++...-.
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988 8999999999999999753 21100011 24677888888887 79999999999998754321
Q ss_pred hh-hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh--HHHHhccc-CcHHHHHHHhhcCChhHHHHHHHH
Q 038217 465 NK-SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY--KKKIADES-GAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 465 nk-~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~I~~~~-g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
+- .... ..-.++.+...+... +.++|..++.+|..++..... ...+ . +.++.++..+++.++.++..|+.+
T Consensus 208 ~~~~~~~-~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 208 NFDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp HHTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hhhhhHH-HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 11 1111 122355566666665 889999999999988753321 1212 3 677888888888888999999999
Q ss_pred HHHhhcCCc------------------cHHHHHH---hCChHHHHHhhCC---------hhHHHHHHHHHHHHhCCcchH
Q 038217 541 LFNLSTHTD------------------NCVRMIE---AGAVTALVGALGH---------EGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 541 L~nLs~~~~------------------n~~~iv~---aG~v~~Lv~lL~~---------~~~~~~al~~L~~La~~~e~~ 590 (715)
+.+++.... ....+++ ...+|.++..|.+ ..++..|..+|..|+..-.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-- 360 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence 888875420 0011111 2356777777741 2577888888888875322
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
..+.. .. ++.+...+.+.+...|+.|+.+|..++.+......... - ..+++.|+.++.+..+.++..|.+.|..+.
T Consensus 361 ~~~~~-~~-~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 361 DDIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp TTHHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HH-HHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12222 23 67777788888899999999999999976532211111 1 458999999999999999999999888887
Q ss_pred Hhhh
Q 038217 671 RCEN 674 (715)
Q Consensus 671 ~~~~ 674 (715)
....
T Consensus 437 ~~~~ 440 (462)
T 1ibr_B 437 ELLP 440 (462)
T ss_dssp HHGG
T ss_pred Hhcc
Confidence 6543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=105.97 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=145.9
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHH-HHhhcCChhHHHHHHHHHHHhhcC--Cc
Q 038217 473 EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALA-TLLRLGTPRGKKDAVTALFNLSTH--TD 549 (715)
Q Consensus 473 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv-~LL~~~~~~~~~~A~~aL~nLs~~--~~ 549 (715)
...|.++++.|+++ +.+.|..|+++|.+|+.+...+..+.. .|+|..++ .+|.+.+..++..|+.+|.||+.. .+
T Consensus 33 ~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 44566788889998 999999999999999998888888877 78887765 567778899999999999999975 46
Q ss_pred cHHHHHHhCChHHHHHhhCC-----------------------hhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHH
Q 038217 550 NCVRMIEAGAVTALVGALGH-----------------------EGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVG 605 (715)
Q Consensus 550 n~~~iv~aG~v~~Lv~lL~~-----------------------~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~ 605 (715)
.+..+++.|++++|..+|+. ..+.+.++.+|.+||.. .+....+.+.++ ++.|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~-l~~l~~ 189 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT-ILRLLF 189 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH-HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc-HHHHHH
Confidence 88999999999999998730 03456788899999874 456677888888 999999
Q ss_pred Hhhc---CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC---cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 606 MMRC---GTPRGKENAVAALLELCRSGGASATERVLKAPA---LVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 606 lL~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g---~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.|.+ .+...+..|+.+|+.++..+ ....+.+.. .| +...|..+..+......-.+..+.+++
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 7654 24678999999999999987 455666666 45 345555555555544333333344443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-06 Score=98.08 Aligned_cols=262 Identities=14% Similarity=0.088 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.|...+.+.+..++..|+..|..++...+.. ....-.+|.+..+..+++...+..|+.+|..++..-.. .+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~- 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV- 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-
Confidence 5566666667888999999999999999765432 12234567777777888899999999988888654332 12
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
....++.+..+++.. +.++|..|+.+|..++..-..... . ...+|.|..++.+++...+..|+.+|..++..-..
T Consensus 162 -~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 162 -KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp -HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred -HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 245677788888776 999999999999999764332221 2 57889999999888889999999999988764322
Q ss_pred HHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 551 CVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
. .....++|.+..+++| ..++..++.+|..++..... ....... ++.++.++.+.++..|..|+.+|..++..
T Consensus 237 ~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 E--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDL-VPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp H--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 1 2233477888888864 47888999999888753211 1222334 89999999988999999999999999876
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 629 ~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
.+......... ..+++.+..++.+.++.++..|...+..+
T Consensus 312 ~~~~~~~~~~~-~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 312 LSADCRENVIM-SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp SCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 54332211112 34577777888877888777776554443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=98.08 Aligned_cols=262 Identities=13% Similarity=0.110 Sum_probs=173.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..++.+...+.+.++.+|..|+..|..++...... ......+|.|..++.+++..++..|+.+|..++..-.. ..+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 35667777778889999999999999998653321 22356789999999999999999999999998754322 122
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~ 549 (715)
....++.+..+++.. +..+|..|+.+|..++..-... ... ...++.++.++++.++.++..|+.+|..++..-.
T Consensus 240 --~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 240 --EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp --HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred --HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc--cch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 245778888888776 8899999999999887532111 112 4679999999998888999999999999886432
Q ss_pred --cHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 550 --NCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 550 --n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
.+....-...+|.+..+++| ..++..++.+|..++..-. .... .... ++.+..++.+.++.+|..|+.+|..+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l-~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT-IEHL-LPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHT-HHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHH-HHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 22212234567777777763 4777777777777753211 1111 1223 67777777777777777777777766
Q ss_pred HhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 626 CRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 626 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+...+... + . ..+++.|..++.+.+.+.+..+...+..+
T Consensus 391 ~~~~~~~~---~-~-~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 391 NEVIGIRQ---L-S-QSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHHSCHHH---H-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCHHH---H-H-HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 65433211 1 1 12344455555544555555544444443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=97.44 Aligned_cols=265 Identities=17% Similarity=0.144 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh-h
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-S 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-~ 467 (715)
+..++.+...|.+.++.+|..|+..+..+...+++. +.+.|.++.|..+|.+.|+.++.+|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 346677888999999999999999999999876653 334578999999999999999999999999998765422 1
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST- 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~- 546 (715)
.-. ..+.+..|+..+... ++-.+...+.+|..+...++.. . ...++.+..++++.++.++..|+.++..+..
T Consensus 197 ~~l-~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 197 LDL-NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE--A---QSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCC-HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred hhc-cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 111 346677888888776 7777777777777776443211 1 3467788888888888999999999999874
Q ss_pred ---CCccHHHHHHhCChHHHHHhhC-ChhHHHHHHHHHHHHhC-Ccch-------------------HHHH------hhh
Q 038217 547 ---HTDNCVRMIEAGAVTALVGALG-HEGVAEEAAGALALIVR-QPIG-------------------AAAV------GEE 596 (715)
Q Consensus 547 ---~~~n~~~iv~aG~v~~Lv~lL~-~~~~~~~al~~L~~La~-~~e~-------------------~~~i------~~~ 596 (715)
+++.... +-.++.+.|+.+++ ++.++..++..|..++. +++. +.++ ...
T Consensus 270 ~~~~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 270 LPKDSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp CCBTTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS
T ss_pred cCCCHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCCh
Confidence 2333332 22345677776664 66777778888777753 1110 1111 122
Q ss_pred CC---cHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH-HHHHH
Q 038217 597 EM---AVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLA-RVFQR 671 (715)
Q Consensus 597 g~---~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL-~~l~~ 671 (715)
.. .++.|..++.+.+...|..++.++..++...+. .. ..+++.|+.++....+.+...+...+ .+++.
T Consensus 349 ~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 349 ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HH------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 22 134445566667889999999999999987532 11 22477888988888777766655433 44443
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-08 Score=83.93 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.+++.|+||++.+.+|++++|||+ ||..|+.+| ..||.|++++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4457899999999999999999999 999999998 789999988754
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-08 Score=106.04 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
.....|+||++.+.+|+.++|||+||..||.+|+..+..+||.|+.++....
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3457999999999999999999999999999999966889999999886543
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-08 Score=92.00 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=49.9
Q ss_pred CCCCCcCccCcccccCc-------eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 288 IPKDFCCPIMLDLMRDP-------VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dP-------v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
.++.+.|+||++.+.+| +.++|||+||..||.+|+.. ..+||.|+.++...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 45688999999999988 88899999999999999998 6799999999988777664
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=7e-08 Score=80.39 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=40.5
Q ss_pred CCCcCccCcccccC--------------ceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 290 KDFCCPIMLDLMRD--------------PVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 290 ~~~~CpIc~~lm~d--------------Pv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
++-.|+||++.|.+ ++.+ +|||.|+..||.+|+.. +.+||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 35679999998877 4455 69999999999999988 67999999887543
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.5e-08 Score=78.94 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=40.5
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+.+++.|+||++.+.+||+++|||+ ||..|+.+ ...||.|++++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3457799999999999999999999 99999964 4789999998755
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-08 Score=82.93 Aligned_cols=66 Identities=11% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCCcCccCcccccCceeC---CCccHhhHHHHHHHHHh----C---CCCCCC--Cccc--cccCCCCccHHHHHHHHHHH
Q 038217 290 KDFCCPIMLDLMRDPVII---STGQTYDRRSIARWMEE----G---HRTCPK--TGQM--LVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~---~cghtfcr~cI~~w~~~----~---~~~CP~--c~~~--l~~~~l~pn~~l~~~i~~~~ 355 (715)
+.+.||||++.+.+|+++ +|||.||+.|+.+|+.. | ...||. |+.. +....+ .+.....+++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 478999999999999865 69999999999999974 3 348999 9887 544322 1222234455554
Q ss_pred H
Q 038217 356 T 356 (715)
Q Consensus 356 ~ 356 (715)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.1e-07 Score=73.67 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCCcCccCcccccCceeC--CCccH-hhHHHHHHHHHhCCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDPVII--STGQT-YDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~--~cght-fcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+++..|+||++-..+++.+ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3466899999999999987 99999 899999999976 678999999874
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=92.81 Aligned_cols=258 Identities=17% Similarity=0.125 Sum_probs=181.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
....+++.+++.+...++-+.-.+..+++.+++.. .-++..+.+-|.++++.++..|+.+|.++.. ..+.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-----~~~~ 119 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-----DKIT 119 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-----GGGH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-----HHHH
Confidence 34566777889999988888888888887655442 2356788888999999999999999998862 1232
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
...++.+...|.+. ++.+|..|+.++..+...... .+.. .+.++.|..+|.+.++.++..|+.+|..++.....
T Consensus 120 --~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 --EYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ--MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp --HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC--CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred --HHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh--hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 45677888999887 999999999999999764332 1222 47889999999988899999999999999875432
Q ss_pred H-HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 551 C-VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 551 ~-~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
. ..-...+.+..|+..+. ++-.+...+.+|..++..++ .. .... ++.+..++++.++.++-.|+.++..+..
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~--~~~~-l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--RE--AQSI-CERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HH--HHHH-HHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HH--HHHH-HHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 1 00112234666676664 66666677777777764322 11 1123 6777778888889999999999999874
Q ss_pred cC--CHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 628 SG--GASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 628 ~~--~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.- .++....+.. .+.+.|+.++. +++.+|..|...+..+...
T Consensus 269 ~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 269 LLPKDSDYYNMLLK--KLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SCCBTTBSHHHHHH--HTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH--HHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 21 1223333332 34778887764 7788888888766666543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-05 Score=73.33 Aligned_cols=217 Identities=13% Similarity=0.115 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk 466 (715)
.+..+..|.+.|...+..++.+|+..|..+.+.-+..-....=..+++.++.++++.|..+..+|+.+|..|-.+.+ ..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 44578899999999999999999999999998743333333334689999999999999999999999998866543 34
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
.... -++..+.++++++ +.-.++.|+..|..|...... .+.+..|..++.+.+.+.+..|+.+|.|++.
T Consensus 111 ~~y~---Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 111 KTFL---KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHH---HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHH---HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 4444 3567888899988 889999999999999443332 3455678888888889999999999999998
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc---hHHHHhhhCCcHHHHHH-Hh-hcCChHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI---GAAAVGEEEMAVTGLVG-MM-RCGTPRGKENAV 619 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e---~~~~i~~~g~~I~~Lv~-lL-~~~s~~~ke~A~ 619 (715)
..++...+ .+++.-+-.+|+ |+.+++.|+.+|..+.+.+= ....+.. +-..|+ +. ..|.|..+..|-
T Consensus 180 ~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 180 SSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK----ISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp GCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH----HHHHHHHGGGCSSCHHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH----HHHHHHHHHHhcCChhHHHHHH
Confidence 65433211 234555666775 78999999999999977532 2233322 556665 33 458888888775
Q ss_pred HH
Q 038217 620 AA 621 (715)
Q Consensus 620 ~~ 621 (715)
.+
T Consensus 254 ~v 255 (265)
T 3b2a_A 254 KV 255 (265)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.4e-07 Score=72.23 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCcCccCcccccCceeC--CCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVII--STGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~--~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
+..|+||++-..|++++ +|||. ||..|+.+|+.. ...||.|++++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 55899999999999988 99998 999999999977 5899999998753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=94.67 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh--
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-- 466 (715)
..++.+...+.+.++..+..|+..+..++.... +.-.... ...++.|+..+.+.++.++..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 455667777788899999999999999996532 2111111 257888999999999999999999999987543211
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc------hhHHHHhcccCcHHHHHHHhhcCC--hhHHHHH
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH------EYKKKIADESGAVEALATLLRLGT--PRGKKDA 537 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~------~~~~~I~~~~g~I~~Lv~LL~~~~--~~~~~~A 537 (715)
.... ...++.++..|+. +..++..|+.+|.+++..- .....+ ...++.|++++.+.+ +..+..+
T Consensus 448 ~~~~~--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 448 PQQHL--PGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp TTTTH--HHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred CHHHH--HHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHH
Confidence 1122 4577888888866 4789999999998886531 111111 346778888887533 6788889
Q ss_pred HHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC-----------------ChhHHHHHHHHHHHHhCC-cchHHHHhhhCC
Q 038217 538 VTALFNLSTHTD-NCVRMIEAGAVTALVGALG-----------------HEGVAEEAAGALALIVRQ-PIGAAAVGEEEM 598 (715)
Q Consensus 538 ~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~-----------------~~~~~~~al~~L~~La~~-~e~~~~i~~~g~ 598 (715)
+.+|..+..... .....+. ..++.++..+. ...++..++.+|.+++.. +..-... ...
T Consensus 521 ~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~ 597 (861)
T 2bpt_A 521 FSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADM 597 (861)
T ss_dssp HHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHH
T ss_pred HHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH
Confidence 999999876433 2222222 35566666553 124566788888888653 2211111 112
Q ss_pred cHHHHHHHhhcCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 599 AVTGLVGMMRCGTP-RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 599 ~I~~Lv~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.++.++.++...+. ..++.++.++..++...+......+ ..+++.|...+.+..+.++..|..++..+.+
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 36777788887666 8899999999888876544433222 2368888888887788888888887776554
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-07 Score=78.95 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCcCccCcccccCc-----------------e-eCCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDP-----------------V-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dP-----------------v-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+-.|+||++.|.+| + .++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 56899999999877 3 3599999999999999987 889999998754
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-05 Score=92.98 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh--
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK-ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-- 466 (715)
..++.+...+.+.++..|..|+..|..++.... +.-... -.+.+|.|+..|.+.++.++..|+++|.+++..-...
T Consensus 366 ~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 456677777888899999999999999986533 222121 2357899999999999999999999999998654321
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh------------HHHHhc-ccCcHHHHHHHhhcC---
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY------------KKKIAD-ESGAVEALATLLRLG--- 529 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~------------~~~I~~-~~g~I~~Lv~LL~~~--- 529 (715)
.... ...++.++..|.. +..++..|+++|.+++..-.. ...+.. ....++.|+.++...
T Consensus 445 ~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred cHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 1222 4677888888866 478899999999998753210 000100 024677777777653
Q ss_pred ChhHHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC-----------C------hhHHHHHHHHHHHHhCCcc-hH
Q 038217 530 TPRGKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGALG-----------H------EGVAEEAAGALALIVRQPI-GA 590 (715)
Q Consensus 530 ~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~-----------~------~~~~~~al~~L~~La~~~e-~~ 590 (715)
+...+..++.+|..|..... .....+ ...++.++..+. + ++++..++.+|..++..-. ..
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 24667778888888875432 222222 234555555442 1 2456778888888876433 11
Q ss_pred HHHhhhCCcHHHHHHHhhcCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGT--PRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLAR 667 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~ 667 (715)
..-.-.. .++.++.++.+.+ ...++.++.++..++...+......+ . .+++.|...+.+. .+.++..|..++.
T Consensus 600 ~~~~~~~-l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~vr~~a~~~l~ 675 (876)
T 1qgr_A 600 ALQISDV-VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-E--AFKPFLGIGLKNYAEYQVCLAAVGLVG 675 (876)
T ss_dssp HHTTHHH-HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-H--HHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH-H--HHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 1111122 3677778777653 47899999999998875433222112 1 2578888888876 7888888887776
Q ss_pred HHHH
Q 038217 668 VFQR 671 (715)
Q Consensus 668 ~l~~ 671 (715)
.+.+
T Consensus 676 ~l~~ 679 (876)
T 1qgr_A 676 DLCR 679 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=87.10 Aligned_cols=270 Identities=11% Similarity=0.032 Sum_probs=183.2
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCc-
Q 038217 391 TAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYD- 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~- 463 (715)
.++.|+..+.++ ++..+..++..+..++..-.. ..+.. ...++.+...+.++ +..++..|+.+|.++...-
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678888999888 899999999999999865311 11211 24566777777776 6899999999999886432
Q ss_pred hh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.+ ..... ....++.+...+... +.++|..|+.+|..+..... ....+. ...++.++..+.+.++.++..|+.+
T Consensus 207 ~~~~~~~~-~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 207 ANFDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp HHHTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHhHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHHHH
Confidence 11 11111 123566677777666 88999999999998875322 223332 2678888888877778889999999
Q ss_pred HHHhhcCCc---------------------cHHHHHHhCChHHHHHhhC---------ChhHHHHHHHHHHHHhCCcchH
Q 038217 541 LFNLSTHTD---------------------NCVRMIEAGAVTALVGALG---------HEGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 541 L~nLs~~~~---------------------n~~~iv~aG~v~~Lv~lL~---------~~~~~~~al~~L~~La~~~e~~ 590 (715)
+.+++.... ...+-.-...++.++..|. +..++..|..+|..++..-.
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-- 360 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--
Confidence 888875320 0000001235677777774 12577788888888865321
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
..++. .. ++.+...+.+.+...|+.|+.+|..++.+.+.+...... .++++.|+..+.+..+.++..|.+.+..+.
T Consensus 361 ~~~~~-~~-l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 361 DDIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp GGGHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HhhHH-HH-HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 11221 22 566667777788999999999999999876533222322 346899999999999999999998888777
Q ss_pred Hh
Q 038217 671 RC 672 (715)
Q Consensus 671 ~~ 672 (715)
..
T Consensus 437 ~~ 438 (876)
T 1qgr_A 437 EL 438 (876)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-05 Score=87.92 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
...+..|.+.|++.++..+..|++.|.++.. ++ +. ...++.+.++|.+.++.++..|+.++.++..... .
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~ 175 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---E 175 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---G
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---H
Confidence 3577889999999999999999999998873 32 22 3567889999999999999999999999976432 2
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc---------------CChhH
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL---------------GTPRG 533 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~---------------~~~~~ 533 (715)
++ .+.++.+..+|... +..++..|+.+|..++..+... .......++.|+++|.+ .++-.
T Consensus 176 ~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 176 LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 33 36777778888776 8899999999999998765321 11113578888877753 24556
Q ss_pred HHHHHHHHHHhhcC
Q 038217 534 KKDAVTALFNLSTH 547 (715)
Q Consensus 534 ~~~A~~aL~nLs~~ 547 (715)
+...+.+|..++..
T Consensus 251 q~~il~~L~~l~~~ 264 (618)
T 1w63_A 251 QVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCC
Confidence 66677777777654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=84.78 Aligned_cols=250 Identities=14% Similarity=0.031 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+..++.+...|.+.++.+|..|+..+.++...+++.. .+.++.+..+|.+.|+.++..|+.+|..++..+.....
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3467888888999999999999999999998877643 27888899999999999999999999999876432111
Q ss_pred hhhhcCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc------
Q 038217 469 IMDEEGCLGSIVKVLRF--------------GLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL------ 528 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~--------------~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~------ 528 (715)
. -...++.++.+|.. -.++-.+...+.+|..+...+.... ...++.|..++..
T Consensus 216 ~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 H--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp H--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred H--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 2 23678888887763 1256677788888888876543211 2344455555431
Q ss_pred CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHH
Q 038217 529 GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGM 606 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~l 606 (715)
.+..+.-.|+.++.++...+. +.. .++..|..+|. ++.++..|+..|..++.. ...+++ .- ...++..
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~-~~-~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ-RH-RSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG-GG-HHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH-HH-HHHHHHH
Confidence 123556677777777644221 111 34666777664 557777777777777542 112222 12 4566666
Q ss_pred hhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 038217 607 MRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVF 669 (715)
Q Consensus 607 L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l 669 (715)
+.+.+..+|..|+.+|..++.... . ..+ +..|...+.+.++..++.+...+..+
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~n--v-~~i------v~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNN--I-RGM------MKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSS--T-HHH------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHccccc--H-HHH------HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666677777777777777776532 1 111 23345555555555555554443333
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-07 Score=75.48 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCccccccC
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVHD 339 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~~ 339 (715)
+.++..|+||++.+.+|+.++|||. ||..|+.+| ..||.|+.++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 3446799999999999999999999 999999987 3899999987643
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=86.71 Aligned_cols=270 Identities=9% Similarity=0.069 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCh-hhHHHH--HHcCChHHHHHhhccC--CHHHHHHHHHHHhhhhcCc-
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGK-ENRAFI--AKAGAIPHLRNLLSTH--NPVAQENSVTAMLNLSIYD- 463 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~-~~r~~i--~~~G~i~~Lv~lL~s~--d~~~~~~A~~aL~nLs~~~- 463 (715)
.++.|+..+.++ ++..+..++..+..+++.-. +.+ .+ .....++.++..|.+. +..++..|+.+|.++...-
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 688999999988 89999999999999986432 111 00 0113456667777776 8999999999998874321
Q ss_pred hh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 464 KN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 464 ~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.+ ..... ....++.+...+.++ +.+.|..|+.+|..+..... ....+. ...++.+...+.+.++.++..|+.+
T Consensus 214 ~~~~~~~~-~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 214 NNMEREGE-RNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp HHHTSHHH-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHccChhH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 11111 123566666777776 89999999999988875322 222221 1566777777777788999999999
Q ss_pred HHHhhcCCcc------------------HHHHHHhCChHHHHHhhCC---------hhHHHHHHHHHHHHhCCcchHHHH
Q 038217 541 LFNLSTHTDN------------------CVRMIEAGAVTALVGALGH---------EGVAEEAAGALALIVRQPIGAAAV 593 (715)
Q Consensus 541 L~nLs~~~~n------------------~~~iv~aG~v~~Lv~lL~~---------~~~~~~al~~L~~La~~~e~~~~i 593 (715)
+..++..... -...+ ..+++.++..|.+ ..++..+..+|..++..-. ..+
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence 9888764211 01111 3467888888852 2577788888888875321 111
Q ss_pred hhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 594 GEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 594 ~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.. . .++.+.+.+.+.+...|+.|+.+|..++...+......... .+++.|+..+.+.++.++..|.+++..+...
T Consensus 367 ~~-~-l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 367 LE-P-VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HH-H-HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HH-H-HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 11 1 25566667777888999999999999997654232233333 4688899999999999999888877766654
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=80.56 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhH-HHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 390 ATAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENR-AFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
..++.++..|.+. +.++|..|+..+..+...-..+- ......-.++.|..++.+.+..++..++.+|..++......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888877 78999999999988653211110 01111113666777778889999999999999997654321
Q ss_pred -hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH------------------Hhc--ccCcHHHHHHH
Q 038217 467 -SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK------------------IAD--ESGAVEALATL 525 (715)
Q Consensus 467 -~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~------------------I~~--~~g~I~~Lv~L 525 (715)
...+ ..+.++.++..++.. +.+++..|+..+..++........ +.. ....+|.|++.
T Consensus 252 ~~~~~-~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 252 METYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp CTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 1222 127788888888776 889999999988888654211000 000 02356777777
Q ss_pred hhcC-------ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcc--hHHHHh
Q 038217 526 LRLG-------TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPI--GAAAVG 594 (715)
Q Consensus 526 L~~~-------~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e--~~~~i~ 594 (715)
+... +...+..|+.+|..|+..-.. .++ ..+++.+...+. +..++..|+.+|..++.... .-....
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7532 236788899999888764331 222 245677777776 45889999999999986322 111111
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGG 630 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 630 (715)
...++.|+..+.+.++.+|..|+.+|.+++...+
T Consensus 407 --~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp --TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 3348999999998999999999999999997643
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.03 E-value=6.3e-07 Score=94.99 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=42.6
Q ss_pred CCCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 287 SIPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.+.+++.||||++.+.+||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45678999999999999999999999 999999988 689999998754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.9e-05 Score=98.42 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
..+..|+..+.+.+.+.|..|...|.+..+.+...-..-.....++.|++.|.+.++.++..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3577888999999999999999999887654311000001124577888889999999999999999999764322 11
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-------HHHhcccCcHHHHHHHhh-cCChhHHHHHHHHH
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-------KKIADESGAVEALATLLR-LGTPRGKKDAVTAL 541 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------~~I~~~~g~I~~Lv~LL~-~~~~~~~~~A~~aL 541 (715)
. ...++.++..|.++ +..+|..|+.+|..++..-... ... ....+|.|+..+. +++...+..|+.+|
T Consensus 84 ~--~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp H--HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1 34667778888776 7788998888888776422111 111 1468899999998 47788999999999
Q ss_pred HHhhcCC-c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC-ChHHHH
Q 038217 542 FNLSTHT-D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG-TPRGKE 616 (715)
Q Consensus 542 ~nLs~~~-~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~-s~~~ke 616 (715)
..++... . .... -...++.|+..|. +..++..|+.+|..++..... .+. ...++.++..+... +...+.
T Consensus 159 ~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~ 232 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTR 232 (1230)
T ss_dssp HHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCT
T ss_pred HHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHH
Confidence 9988421 1 1111 1234566666665 458999999999999864322 122 23378888877654 345677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 617 NAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 617 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.|+.++..++...+..... .-..+++.++..+++.++.+++.|...+..+.+.
T Consensus 233 ~a~~~l~~l~~~~~~~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGHRIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp THHHHHHHHHHHSSGGGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7888888888765542211 1145899999999888888888888777766553
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-06 Score=67.23 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCCCCcCccCcccccCceeCCCccH-hhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQT-YDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cght-fcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
-.++..|+||++...+++.++|||. ||..|+.+ ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 5789999998754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00018 Score=74.86 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..++.+|.+++.+.++.++..|..+...+.+.-..|+..||+..|++.....+..+|.+++++|.+|-.+..+-..++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 56778899999999999999999999554667888888999999999999999999999999999999999988887777
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcc---------cCcHHHHHHHhh---cCChhHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADE---------SGAVEALATLLR---LGTPRGKKDA 537 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~---------~g~I~~Lv~LL~---~~~~~~~~~A 537 (715)
.....|..++.++.+. +..+.+.|+.+|..+....+ +...+... .--...|+.+|+ .++.+.+.+|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5677899999999875 88999999999999977654 22222110 113679999997 5678889999
Q ss_pred HHHHHHhhc
Q 038217 538 VTALFNLST 546 (715)
Q Consensus 538 ~~aL~nLs~ 546 (715)
++.|-.+-.
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888766644
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-06 Score=77.15 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=0.4
Q ss_pred CCcCccCcccccCce-----------------e-CCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 291 DFCCPIMLDLMRDPV-----------------I-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv-----------------~-~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 348999999998742 2 389999999999999998 789999998753
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.7e-06 Score=67.58 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=43.2
Q ss_pred CCCCCCcCccCcccc--cCceeCCCc-----cHhhHHHHHHHHHhC-CCCCCCCccccccC
Q 038217 287 SIPKDFCCPIMLDLM--RDPVIISTG-----QTYDRRSIARWMEEG-HRTCPKTGQMLVHD 339 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm--~dPv~~~cg-----htfcr~cI~~w~~~~-~~~CP~c~~~l~~~ 339 (715)
...++..|+||++-+ .+|++++|+ |.|...||.+|+... ..+||.|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345567899999776 468888996 999999999999873 47999999987643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00099 Score=65.37 Aligned_cols=222 Identities=13% Similarity=0.067 Sum_probs=163.5
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCc--hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-h
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD--KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-Y 508 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~--~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~ 508 (715)
+.+..|..||...|+.++.+|+.+|-.+-..- .-+..++ ...++.++.++++. +..+.-.|+.+|..|-.+-+ .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCC
Confidence 35778899999999999999999999997763 3344444 67899999999887 99999999999998865443 3
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ 586 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~ 586 (715)
..... ..+.+|.+++.++++-....|+..|..|..-...+ +++..+..+++ |..++..++.+|.+++..
T Consensus 110 ~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 SKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 44442 36778999999899999999999999993322222 24556777775 779999999999999874
Q ss_pred cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHH
Q 038217 587 PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG-GASATERVLKAPALVGLLQALL-FTGTKRARRKAAS 664 (715)
Q Consensus 587 ~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll-~s~~~~~k~~A~~ 664 (715)
.+....+ .+. +.-+-+++++.++..++.|+.+|..+.+.. .++....+.. +....-++. ..|.|..+.||..
T Consensus 181 S~D~~i~--~~I-~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 181 SADSGHL--TLI-LDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK---ISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CSSCCCG--GGT-TTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH---HHHHHHHGGGCSSCHHHHHHHHH
T ss_pred cCCHHHH--HHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH---HHHHHHHHHHhcCChhHHHHHHH
Confidence 4322211 122 345667888889999999999999988764 2233334433 244444566 6789999999988
Q ss_pred HHHHHHH
Q 038217 665 LARVFQR 671 (715)
Q Consensus 665 lL~~l~~ 671 (715)
....+..
T Consensus 255 v~~~le~ 261 (265)
T 3b2a_A 255 VSDLIDS 261 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=72.92 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=134.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhhhhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCc--hhHH
Q 038217 435 PHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIMDEEGCLGSIVKVLR-FGLTTEARENAAATLFSLSAVH--EYKK 510 (715)
Q Consensus 435 ~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~--~~~~ 510 (715)
+.+...+.+.+...+..|+..|..+... +.....- -...++.|...|. .. +..++..|+.+|..|+..- ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--YGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC--HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3477888899999999999999998754 2211111 1245777888884 65 8999999999999998522 1222
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC--
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-- 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-- 586 (715)
.+ ...++.|+..+.+.+..++..|..+|.++...... . ..++.+...|+ ++.++..++.+|..+...
T Consensus 95 ~~---~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA---SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH---HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 35789999999988899999999999999875431 1 25677788886 568999999999996543
Q ss_pred cch-HHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCH
Q 038217 587 PIG-AAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 587 ~e~-~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
++. -...+ ..+++.|+.++.+..+++|..|..+|..++..-|+
T Consensus 166 ~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 166 PTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 221 11112 23489999999989999999999999999876544
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=74.02 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=132.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-HHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchh-hhhhh
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENR-AFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKN-KSRIM 470 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~n-k~~I~ 470 (715)
.+.+.+.+.+|..|..|+..|..+...++..- ..+ ...++.|..+|. +.+..++..|+.+|..|+..-.. -...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence 35678889999999999999999997633210 001 134677888884 89999999999999999853321 1122
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC--
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT-- 548 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~-- 548 (715)
....++.|+..+... +..+|..|..+|..+...... ...++.|...+++.++.++..++..|..+....
T Consensus 96 -~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 -ASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp -HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred -HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 245788999998887 889999999999999764321 246778888898888999999999999965432
Q ss_pred c-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 549 D-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 549 ~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+ .-...+. ..+|.|+.+|. +..++..|..+|..++.
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 1122222 57888999996 45899999999988864
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00097 Score=72.68 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=152.6
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcC--ChHHHHHhhcc---------------C--CHHHHHHHH
Q 038217 394 LLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAG--AIPHLRNLLST---------------H--NPVAQENSV 453 (715)
Q Consensus 394 ~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s---------------~--d~~~~~~A~ 453 (715)
.++..|.. ++.+.+.-++..|..+... ++.|..+.+.+ .+|+++.++.. + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45566665 3456666789999999964 89999998653 47777655441 1 356799999
Q ss_pred HHHhhhhcCchhhhhhhhhcCcH--HHHHHHHhcCCCHHHHHHHHHHHHHhccCc--hhH---H-HHhcccCcHHHHHHH
Q 038217 454 TAMLNLSIYDKNKSRIMDEEGCL--GSIVKVLRFGLTTEARENAAATLFSLSAVH--EYK---K-KIADESGAVEALATL 525 (715)
Q Consensus 454 ~aL~nLs~~~~nk~~I~~~~g~i--~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~---~-~I~~~~g~I~~Lv~L 525 (715)
-+++-|+.+++-...+. ..+.. ..|+.+++....+.+...+.++|.||.... ... . .+.. .++ +.+++.
T Consensus 250 l~iWlLSF~~~~~~~l~-~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~ 326 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQS 326 (480)
T ss_dssp HHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHH
T ss_pred HHHHHHHcCHHHHHHHH-hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHH
Confidence 99999999988777777 66644 677888887657888999999999998754 111 2 2222 344 556666
Q ss_pred hhc---CChhHHHHHHHH-------HHHhhcCC------------------------ccHHHHHHh--CChHHHHHhhC-
Q 038217 526 LRL---GTPRGKKDAVTA-------LFNLSTHT------------------------DNCVRMIEA--GAVTALVGALG- 568 (715)
Q Consensus 526 L~~---~~~~~~~~A~~a-------L~nLs~~~------------------------~n~~~iv~a--G~v~~Lv~lL~- 568 (715)
|.. .+++...+--.. ...|++.+ +|..++-+. ..+..|+++|.
T Consensus 327 L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~ 406 (480)
T 1ho8_A 327 LSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA 406 (480)
T ss_dssp HHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 654 334443332211 11122111 122222221 24677888885
Q ss_pred -----------ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 038217 569 -----------HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCR 627 (715)
Q Consensus 569 -----------~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 627 (715)
|+.+..-|+.=+..++. .|+||..+-+.|+ =..++++|.+.++++|.+|+.++..+-.
T Consensus 407 ~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~-K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 407 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG-KADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH-HHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred hccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23455556666777777 6999998888888 7788889999999999999998876654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.2e-05 Score=73.08 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.|+..|++.++..+..|+..|..+.. ..++.|+.+|+++++.++..|+.+|.++.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~---------- 70 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ---------- 70 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------
Confidence 56788889998888888888887754431 13799999999999999999999998875
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
...+++.|+..|+.. +..+|..|+.+|..+. . ..+++.|+.++++.++.++..|+.+|.+
T Consensus 71 -~~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 -DERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 234688899999887 8999999999998874 2 5678999999988888999999888754
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0041 Score=71.53 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL--STHNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
...+..+.+.|++.++..+.-|++.|.++.. ++ +++ ..++.+.++| .+.++-++..|+.++.++.....
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-- 180 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-- 180 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--
Confidence 3467788889999999999999999988863 33 232 4678889999 88999999999999999986432
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 506 (715)
..+. ..+.++.+..+|... +..++.+|+.+|..++..+
T Consensus 181 ~~~~-~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 181 DLVP-MGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp GGCC-CCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC
T ss_pred hhcC-chhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC
Confidence 2332 358999999999776 8899999999999987643
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=88.74 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh---
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK--- 466 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk--- 466 (715)
..++.|+..|.+.+++.|..|+..|..++..-+. ..+ ...++.|+..|.+++..++..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4678888999999999999999999999865433 111 235678888888888899999999998886533211
Q ss_pred ----hhhhhhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHH
Q 038217 467 ----SRIMDEEGCLGSIVKVLRF-GLTTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRLGTPRGKKDAVT 539 (715)
Q Consensus 467 ----~~I~~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~ 539 (715)
... ....++.|+..+.. + +...+..|+.+|..++... .....+ ...++.|+..+.+.++.+++.|+.
T Consensus 124 ~~~~~~~--~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 124 SALAANV--CKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp CCTHHHH--HHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred cchHHHH--HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHH
Confidence 112 35678899999984 5 8899999999999887421 111111 346677788888778899999999
Q ss_pred HHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHh-hhCCcHHHHHHHhhcCChHHH
Q 038217 540 ALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVG-EEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 540 aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~-~~g~~I~~Lv~lL~~~s~~~k 615 (715)
+|..++...+.. + -...++.++..|. +...+..++.++..++.... . .+. -....++.++..+...++..|
T Consensus 198 al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 198 ALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999998754432 1 1235777777774 22445556667766654211 1 111 112347888888888888999
Q ss_pred HHHHHHHHHHHhcCCH
Q 038217 616 ENAVAALLELCRSGGA 631 (715)
Q Consensus 616 e~A~~~L~~L~~~~~~ 631 (715)
+.|+.++..++...++
T Consensus 273 ~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHChH
Confidence 9999999998886544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0069 Score=69.65 Aligned_cols=250 Identities=12% Similarity=0.109 Sum_probs=162.9
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 390 ATAELLIQQL--ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L--~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
..++.+...| .+.++.++..|+-.+.++.+.+++.- ...+.++.|..+|.+.|+.++.+|+.+|..++..+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4566777888 78899999999999999998776542 2248999999999999999999999999999765432
Q ss_pred hhhhhcCcHHHHHHHHh----cC-C-----------CHHHHHHHHHHHHHhccCc--hhHHHHhcccCcHHHHHHHhhc-
Q 038217 468 RIMDEEGCLGSIVKVLR----FG-L-----------TTEARENAAATLFSLSAVH--EYKKKIADESGAVEALATLLRL- 528 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~----~~-~-----------~~e~~~~Aa~~L~~Ls~~~--~~~~~I~~~~g~I~~Lv~LL~~- 528 (715)
.+ ...++.++..|. .+ . ++=.+.....+|..+...+ +.+..+.+ .++.++..+.+
T Consensus 221 ~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~~ 294 (621)
T 2vgl_A 221 EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQEP 294 (621)
T ss_dssp HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHSC
T ss_pred HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhccC
Confidence 11 234455554443 22 1 3456777777777776532 23333322 34444433211
Q ss_pred --------CC--hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhh
Q 038217 529 --------GT--PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEE 596 (715)
Q Consensus 529 --------~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~ 596 (715)
.+ ..+.-.|+.++..+...++-.. .++..|..+|. ++.++-.++..|..++........+ +
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~- 367 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K- 367 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-
Confidence 12 2556677888888763222222 35677888884 6789999999999997643222222 2
Q ss_pred CCcHHHHHHHhh-cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 038217 597 EMAVTGLVGMMR-CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR 667 (715)
Q Consensus 597 g~~I~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~ 667 (715)
.- ...++..+. +.+..+|..|+.+|..++.. .. ...+ +..|...+.+.+...++.+...+.
T Consensus 368 ~~-~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~N-v~~I------v~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 368 TH-IETVINALKTERDVSVRQRAVDLLYAMCDR--SN-AQQI------VAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp TT-HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HH-HHHH------HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hh-HHHH------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22 677888888 78889999999999999865 22 2222 334666666666666655554333
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0055 Score=73.18 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh---hhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGK---ENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKN 465 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~---~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~n 465 (715)
+.+..|.+.+..-... ..|+..+..++.... ..-..++ +.+|.++..+.+++..++..|-.++..+... +.+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 3556666666533222 678888888885431 1222222 5788888888888889998888888777432 221
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcCChhHHHHHHHHHHHh
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLGTPRGKKDAVTALFNL 544 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nL 544 (715)
.. ..++|.|+..|+++..+..+..|+.++..|+... ...++. -+..||.+...+.+-.+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 11 3468999999987657999999999999998643 233332 256888888888777789999999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLE 624 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~ 624 (715)
|..-+|+.. ...||.|+..+.+++-+.+++..|..-..-.+.-...+. .++|.|.+-|...+...++.++-+.-|
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n 277 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDN 277 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcc
Confidence 886666642 356899999998876677777666654332222211111 115666666666688889999999999
Q ss_pred HHhcCCHH-HHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhhh
Q 038217 625 LCRSGGAS-ATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 625 L~~~~~~~-~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~~~~ 674 (715)
+|+.-.+. ....+ - ..++|.|......- .|.++..|...+..|.+...
T Consensus 278 ~~~lv~~~~~~~~f-~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 278 MCKLVEDPQVIAPF-L-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHTTCCCHHHHHHH-H-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHhhh-h-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99865433 33333 3 56788888877654 99999999999999987644
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0033 Score=65.31 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=118.9
Q ss_pred HHHHHhhcCChhHHHHHHHHHHH-hhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhC
Q 038217 521 ALATLLRLGTPRGKKDAVTALFN-LSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEE 597 (715)
Q Consensus 521 ~Lv~LL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g 597 (715)
.+++-|.+++.+.++.++.-|.. ++.+.+....++..+++..|+.... ++..+..++.+|.+|-.+..|...++.+.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34445556777888888888888 6677889999999999999999995 77999999999999999999999998877
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHh---------cCCcHHHHHHHhh---cCCHHHHHHHHHH
Q 038217 598 MAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLK---------APALVGLLQALLF---TGTKRARRKAASL 665 (715)
Q Consensus 598 ~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~---------~~g~i~~L~~Ll~---s~~~~~k~~A~~l 665 (715)
.+|..|+.++.+....+...|+++|..+|..++.. ...+.+ +..-.+.|+.+++ +++...+.+|-.|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 77999999999888889999999999999887322 112221 1114678999997 6788999998887
Q ss_pred HHHH
Q 038217 666 ARVF 669 (715)
Q Consensus 666 L~~l 669 (715)
++-+
T Consensus 281 IN~l 284 (339)
T 3dad_A 281 INKT 284 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.36 E-value=4.2e-05 Score=69.27 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=87.4
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
...++.|+.+|+++++.++..|+.+|.++.. ..++.|+..|++. +..+|..|+.+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC------
Confidence 4678889999999999999988888876531 1368899999987 99999999999987752
Q ss_pred HHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHH
Q 038217 511 KIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALAL 582 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~ 582 (715)
..+++.|+.++.+.++.++..|+.+|.++.. ..+++.|+.+++ ++.++..|..+|..
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999998752 246888999996 45788888877754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00096 Score=67.56 Aligned_cols=187 Identities=7% Similarity=0.080 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHhhChhhHHHHHH-cCChHHHHHhh-ccCCHHHHHHHHHHHhhhhcCch--hhh-h
Q 038217 395 LIQQLANGSPRAKTVAAREIRL-LAKTGKENRAFIAK-AGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDK--NKS-R 468 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~--nk~-~ 468 (715)
+-..+.|.+|..|..|+..|.. ++..++.....-.+ ...+..|.+.| +..+..++..|+.+|..|+..-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3467889999999999999999 87543321100001 13466777788 67899999999999999984322 111 2
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-hhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
. ..-.++.++..++.. ...++..+..+|..+...- ..... ..-...++.|+..|++.++..+..++.+|..+...
T Consensus 101 y--~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp H--HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2 234788999998876 7888888888888776522 11100 00124677888889888899999999999988764
Q ss_pred CccH-HHH---HHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 548 TDNC-VRM---IEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 548 ~~n~-~~i---v~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
.... ..+ +....+|.|..++. +..++..|..+|..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3321 222 22467888999997 45899999999988863
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=57.66 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=38.8
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHhC-CCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEG-HRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~-~~~CP~c~~~l~~ 338 (715)
--.|.||.+++..-..- .|+|.|-..||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45899999988744433 799999999999999863 3899999987643
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0029 Score=64.03 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=129.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hccC-chhHHHHhcccCcHHHHHHHh-hcCChhHHHHHHHHHHHhhcCC---ccHH
Q 038217 479 IVKVLRFGLTTEARENAAATLFS-LSAV-HEYKKKIADESGAVEALATLL-RLGTPRGKKDAVTALFNLSTHT---DNCV 552 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~I~~~~g~I~~Lv~LL-~~~~~~~~~~A~~aL~nLs~~~---~n~~ 552 (715)
+-..+.+. ++..|..|+..|.. +... .+.....+.....+..|.+.+ ++.+..++..|+.+|..|+..- ....
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556676 99999999999998 7632 221100111124577888888 6778888999999999998522 2210
Q ss_pred HHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 553 RMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 553 ~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
.... -++|.++..++| ..+++.+..+|..++..-+- ..... -..+++.|...|.+.++..|+.++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1111 268889999974 57888888888888752211 11100 1124788888898889999999999999988776
Q ss_pred CH--HHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 630 GA--SATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 630 ~~--~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
+. ........ ..+++.|..++.+..+.+|..|...+..+.+.
T Consensus 178 ~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 178 KDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 42 22222331 35799999999999999999999888777653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.15 E-value=0.028 Score=66.55 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=123.7
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
+++.|..+|.+++..+.+.|+.+|..+-....| ..++..|+..+....+..++..++-.|..+..
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-------- 537 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAVGLALINY-------- 537 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------
Confidence 466778888777776677777777665433332 23455666665554477788888777776643
Q ss_pred hcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcc
Q 038217 513 ADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPI 588 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e 588 (715)
+. ...++.+++.|.. .++-++..|+.++..-.....|.. +|+.|++.+. ++.++..|+..|..++...+
T Consensus 538 g~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GR-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TC-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 22 5678888888875 445666666666655445555543 3666777763 56888889988888765332
Q ss_pred hHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAAS 664 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~ 664 (715)
.. ++.+++ +++++++.+|..|+.+|..+|.+++.. . ++..|..++++.++.+++.|..
T Consensus 611 --------e~-v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---~------aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 611 --------TT-VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---S------AIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp --------SS-HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH---H------HHHHHHHHHTCSSHHHHHHHHH
T ss_pred --------HH-HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH---H------HHHHHHHHccCCCHHHHHHHHH
Confidence 34 677777 455688999999999999998876531 1 1333455555555555555543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.09 Score=57.31 Aligned_cols=221 Identities=10% Similarity=0.113 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhhhhcCchhhhhhhhhcC-cHHHHHHHHhc---------------C-CCHHHHHHHHHHHHHhccCch
Q 038217 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEG-CLGSIVKVLRF---------------G-LTTEARENAAATLFSLSAVHE 507 (715)
Q Consensus 445 d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g-~i~~Lv~lL~~---------------~-~~~e~~~~Aa~~L~~Ls~~~~ 507 (715)
+...+.-++.+|..|...++.|..+....| .++.++.+++. + .....+.+++-+++-||-.++
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 345566678888888888888888872222 46777665542 1 124567889999999999988
Q ss_pred hHHHHhcccCcH--HHHHHHhhcCC-hhHHHHHHHHHHHhhcCC-c----cHHHHHHhCChHHHHHhhC-----ChhHHH
Q 038217 508 YKKKIADESGAV--EALATLLRLGT-PRGKKDAVTALFNLSTHT-D----NCVRMIEAGAVTALVGALG-----HEGVAE 574 (715)
Q Consensus 508 ~~~~I~~~~g~I--~~Lv~LL~~~~-~~~~~~A~~aL~nLs~~~-~----n~~~iv~aG~v~~Lv~lL~-----~~~~~~ 574 (715)
....+.. .+.+ +.|+++++... +.+..-++.+|.||.... + ....++-.|.+++++..|. |+++.+
T Consensus 261 ~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHH
Confidence 7777766 5543 67778787644 688889999999998754 1 2232332233355666662 665544
Q ss_pred HHHHHHHHHh-------C---------------CcchHH-HHh--------hhC-CcHHHHHHHhhc----------CCh
Q 038217 575 EAAGALALIV-------R---------------QPIGAA-AVG--------EEE-MAVTGLVGMMRC----------GTP 612 (715)
Q Consensus 575 ~al~~L~~La-------~---------------~~e~~~-~i~--------~~g-~~I~~Lv~lL~~----------~s~ 612 (715)
..-.+...|. + .|-.+. .+. +.+ ..+..|+++|.+ .++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 4332222221 1 122222 222 211 246788898874 245
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 613 RGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 613 ~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
.....|+.=+..++++-| ..+..+.+ .|+=..+++|+.+.++.++..|...++-
T Consensus 420 ~~laVAc~Digefvr~~P-~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLP-ESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHHCT-THHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCc-chhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 556666666888888874 34445544 8999999999999999999888765543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.26 Score=46.60 Aligned_cols=209 Identities=13% Similarity=0.141 Sum_probs=141.0
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
.++..++.+|.++-..+|.||+..+.+++..-.. .. .-.+..|+.+++......+....+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e---l~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED---LY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG---GH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH---HH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 4678899999988899999999999998864331 11 234556666766654777777777888877653 223
Q ss_pred HhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhCCh--hHHHHHHHHHHHHhCCcc
Q 038217 512 IADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALGHE--GVAEEAAGALALIVRQPI 588 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~~~--~~~~~al~~L~~La~~~e 588 (715)
++ .+.+|.|..=..-|++..+.+...+|..+.. +++--. +++.-+..++.++ .-+-.|+..+..+ .+
T Consensus 104 ~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~al---Ge 173 (253)
T 2db0_A 104 LV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAM---GE 173 (253)
T ss_dssp HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTC---CT
T ss_pred HH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHH---hc
Confidence 32 2567777777777899999999999887765 333222 4455677788643 3333344444444 33
Q ss_pred hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 589 GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 589 ~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
+.-.-+ ..- +|.|..+|..++.-+|..|+.+|.+++..+ +..+..+.. -++=+.+.++-++.+....|..
T Consensus 174 n~~~yv-~Pf-LprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~-------kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 NSFKYV-NPF-LPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIK-------RLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTHHHH-GGG-HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHHH
T ss_pred cCcccc-Ccc-hHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHH-------HHHHhcCcHHHHHHHHHHHHHH
Confidence 333222 244 899999999999999999999999999987 344443333 4555666777777776654433
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00063 Score=52.66 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred CCCcCccCcccccCceeCCCcc-----HhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQ-----TYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cgh-----tfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
++-.|.||++-..+|.+.+|.+ .|-+.|+.+|+.. ++.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3558999998878887778653 6899999999985 6789999998764
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=57.03 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=39.1
Q ss_pred cCccCcccccCce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 293 CCPIMLDLMRDPV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~dPv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.|++|.-.+..-. +++|+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888887776554 569999999999999999889999999988753
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00076 Score=69.72 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCcCccCcccccC----cee----CCCccHhhHHHHHHHHHhCC----------CCCCCCcccccc
Q 038217 291 DFCCPIMLDLMRD----PVI----ISTGQTYDRRSIARWMEEGH----------RTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~d----Pv~----~~cghtfcr~cI~~w~~~~~----------~~CP~c~~~l~~ 338 (715)
.-.|+||+..+.+ |-. ..|||.|...|+.+||.... .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4579999999887 432 26999999999999998621 479999998764
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=60.97 Aligned_cols=267 Identities=12% Similarity=0.049 Sum_probs=143.5
Q ss_pred CCccHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCChhHHHhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 038217 341 LVPNRALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPRAKTVAAREIRLLAKT 420 (715)
Q Consensus 341 l~pn~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~ 420 (715)
-.+|..+|.++--+....... + . + .-..+..|.+.+++.++-.+-.|++.|.++...
T Consensus 78 ~s~d~~lKrLvYLyl~~~~~~---~-~--------e-----------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 78 QSNDPTLRRMCYLTIKEMSCI---A-E--------D-----------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp GCCCHHHHHHHHHHHHHHTTT---S-S--------C-----------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT
T ss_pred cCCCHHHHHHHHHHHHHhCCC---H-H--------H-----------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH
Confidence 457889999877666554311 1 0 0 114678899999999999999999999888743
Q ss_pred ChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 421 GKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 421 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
+.-. ...+.+-+.|.+.++-++..|+.+..+|..... + ++ .+.++.+-+++.+. ++-+..+|.++|.
T Consensus 135 --~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 135 --TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--D-VV--KRWVNEAQEAASSD-NIMVQYHALGLLY 201 (355)
T ss_dssp --TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--H-HH--HTTHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred --HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--H-HH--HHHHHHHHHHhcCC-CccHHHHHHHHHH
Confidence 2221 345567778889999999999999998875543 2 34 36889999999887 8888999999999
Q ss_pred HhccCchhHHHHhcccCcHHHHHHHhhcC---ChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHH
Q 038217 501 SLSAVHEYKKKIADESGAVEALATLLRLG---TPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEE 575 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~---~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~ 575 (715)
.+...+. .++..|+.-+..+ ++-+.-.-+.++..++..++. -.....++.+...|+ ++.+.-+
T Consensus 202 ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyE 269 (355)
T 3tjz_B 202 HVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYE 269 (355)
T ss_dssp HHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHH
T ss_pred HHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHH
Confidence 9987542 1344555555443 233333333333333332200 012345666667775 5688999
Q ss_pred HHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCC
Q 038217 576 AAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGT 655 (715)
Q Consensus 576 al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~ 655 (715)
|+.++..+...+. .+. ..+ +..|..++.+.++..|=.|+..|..+....+.. .... -.-+.+++.+++
T Consensus 270 a~k~I~~l~~~~~---~~~-~~a-~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~-v~~~------n~~ie~li~d~n 337 (355)
T 3tjz_B 270 AASAIVNLPGCSA---KEL-APA-VSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA-VTAC------NLDLENLVTDAN 337 (355)
T ss_dssp HHHHHTC---------------C-CCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHhccCCCH---HHH-HHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH-HHHH------HHHHHHHccCCc
Confidence 9999988754222 122 233 577778888888999999999988888765432 2111 334677777776
Q ss_pred HHHHHHHH-HHHH
Q 038217 656 KRARRKAA-SLAR 667 (715)
Q Consensus 656 ~~~k~~A~-~lL~ 667 (715)
..+...|- .||+
T Consensus 338 ~sI~t~Aittllk 350 (355)
T 3tjz_B 338 RSIATLAITTLLK 350 (355)
T ss_dssp -------------
T ss_pred HhHHHHHHHHhhh
Confidence 66666554 3444
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.092 Score=53.50 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=119.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--HHHH-Hc-CChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-----h
Q 038217 395 LIQQLANGSPRAKTVAAREIRLLAKTGKENR--AFIA-KA-GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-----N 465 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r--~~i~-~~-G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-----n 465 (715)
|-.+|.|.+|..|..|+.+|..+....+... .... .. ...+.+-+.+.+.+..++..++.+|..+...-. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4488999999999999999999886543211 1111 12 345556678888999999999999988764321 1
Q ss_pred -hhhhhhhcCcHHHHHHH-HhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHH
Q 038217 466 -KSRIMDEEGCLGSIVKV-LRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFN 543 (715)
Q Consensus 466 -k~~I~~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~n 543 (715)
..... ....++.|+.- |.++ ...++..|..++..+........ ..++.++..+.+.++..+..++..|..
T Consensus 94 ~~~~~~-~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITL-ISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHH-HHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred chhHHH-HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11122 35567777765 5555 77888888888877754322111 234566667778889999999998887
Q ss_pred hhcC--Cc--cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 544 LSTH--TD--NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 544 Ls~~--~~--n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+... .. +....+ ..+++.+..+|. |+.++..|..++..+-.
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 7542 11 112222 235666777775 67999999999988754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.02 E-value=1.2 Score=52.82 Aligned_cols=236 Identities=15% Similarity=0.026 Sum_probs=141.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh-ccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.++.|...|...+...+..|+..|..+.-.+ .|. .++..|+..+ ...+..++..++.+|..+...
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 3455555555444433334444444432211 111 1234555543 334566777777777665433
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~ 548 (715)
....++.+++.|....++-+|..++-++..-.....+ ..+|+.|+..+.+ .+..++..|+.+|..+....
T Consensus 539 --~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 --RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp --CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred --ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 3346677788887654666776665555422222112 3356667766654 45678888999988876544
Q ss_pred ccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLEL 625 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L 625 (715)
. ..++.++.+|. |+.++..+..+|..++...... .. +..|..+..+....++..|+.+|..+
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~a-id~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SA-IDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HH-HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HH-HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3 24666777663 7789999999999886432221 22 66777788888999999999999988
Q ss_pred HhcCCHH---HHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHH
Q 038217 626 CRSGGAS---ATERVLKAPALVGLLQALLFT--GTKRARRKAASLARVFQ 670 (715)
Q Consensus 626 ~~~~~~~---~~~~l~~~~g~i~~L~~Ll~s--~~~~~k~~A~~lL~~l~ 670 (715)
..+..+. ....+ ...|.....+ .++.++..|+-..-++.
T Consensus 675 g~gtnna~~~rva~~------l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 675 LIQQTEKLNPQVADI------NKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp STTCCTTTCTTHHHH------HHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred hcCCccccchHHHHH------HHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 8776433 12222 3336666654 46777877777666654
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.33 Score=48.27 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCC-----HHHHHHHHHHHhhhhcCchh--hhhhhhhcCcHHH
Q 038217 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHN-----PVAQENSVTAMLNLSIYDKN--KSRIMDEEGCLGS 478 (715)
Q Consensus 406 ~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~~~~A~~aL~nLs~~~~n--k~~I~~~~g~i~~ 478 (715)
-.+.|+.-++-+|. +++.|..+.+++..-.|-.+|...+ .-++-.+++++..|.+.++. -.-+. +.+.||.
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL-~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLL-TTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHH-HTTHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHH-hhhHHHH
Confidence 34788888888885 6899999999998888899997643 45788888888998876543 33334 7889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh--------hcCChhHHHHHHHHHHHhhcCCcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL--------RLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL--------~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.++.++.| +.-.+..|+-++..+-.++..-..+.....-+.++...| +..+++..|+.+.+-..|+.++..
T Consensus 150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999 999999999999999888887777766444444333333 346789999999999999998887
Q ss_pred HHHHHH
Q 038217 551 CVRMIE 556 (715)
Q Consensus 551 ~~~iv~ 556 (715)
+..+..
T Consensus 229 r~aL~~ 234 (268)
T 2fv2_A 229 REALRQ 234 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.94 Score=47.82 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=105.2
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 038217 433 AIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI 512 (715)
Q Consensus 433 ~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I 512 (715)
..+..++++.++|...+.-....+.+++...+ ..|+ ++..|.+=++++ ++-.|..|..+|.++...+- -
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~--e~iL----v~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m-~--- 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE--DVII----VTSSLTKDMTGK-EDSYRGPAVRALCQITDSTM-L--- 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS--CGGG----GHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTT-H---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH--HHHH----HHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHH-H---
Confidence 34567889999999999999999988887733 3344 577788888887 88999999999999966432 1
Q ss_pred hcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCc
Q 038217 513 ADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQP 587 (715)
Q Consensus 513 ~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~ 587 (715)
....+.+.+.|.+.++-+++.|+.+..+|...... +++ +.+..+-.++. ++.++-+|+++|..+..++
T Consensus 138 ---~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 138 ---QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 13455667777788999999999999999764322 333 67888888886 5688899999999997643
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.63 E-value=1.2 Score=53.35 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
...++.|+..|.+ +.|..+..|+..|..++...+ ..+.. ...||.+....-+..+++...|..++..++..-.|
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 5578899998874 479999999999999997653 33332 35677777777778899999999999999876666
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc---Cchh-HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA---VHEY-KKKIADESGAVEALATLLRLGTPRGKKDAVTAL 541 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~---~~~~-~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL 541 (715)
+.. ...||.|++.+.++ + + .. .++..|+. ..+. ...+ +=.+|.|.+-|+..+...+..++..+
T Consensus 209 ~d~----~~~~~~~~~~~~~p-~-~-~~---~~~~~l~~~tfv~~v~~~~l---~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 209 KDI----ERFIPSLIQCIADP-T-E-VP---ETVHLLGATTFVAEVTPATL---SIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp TTT----GGGHHHHHHHHHCT-T-H-HH---HHHHHHTTCCCCSCCCHHHH---HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cch----hhhHHHHHHHhcCh-h-h-hH---HHHHHhhcCeeEeeecchhH---HHHHHHHHhhhccCcchhheeeEEEE
Confidence 653 35899999999886 2 2 33 34555543 2221 1111 12467777778777888899999999
Q ss_pred HHhhcCCccHHHHHHh--CChHHHHHhh---CChhHHHHHHHHHHHH
Q 038217 542 FNLSTHTDNCVRMIEA--GAVTALVGAL---GHEGVAEEAAGALALI 583 (715)
Q Consensus 542 ~nLs~~~~n~~~iv~a--G~v~~Lv~lL---~~~~~~~~al~~L~~L 583 (715)
-|||.--++...+... ..+|.|-+.. .++++++.|..++..|
T Consensus 276 ~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 9999866554443322 3344444333 2776666665555555
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.93 Score=45.09 Aligned_cols=201 Identities=10% Similarity=0.059 Sum_probs=136.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHh-------hccC-----CHHHHHHHHHHHh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNL-------LSTH-----NPVAQENSVTAML 457 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~l-------L~s~-----d~~~~~~A~~aL~ 457 (715)
.+..++..|.+. +.+..|+.+|..--..-++.-..+-.. |.+..|++= |+.+ ...-..+|+..|.
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 355666666644 457888887766444335555556555 777777542 2221 1234467777778
Q ss_pred hhhcCchhhhhhhhhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCCh
Q 038217 458 NLSIYDKNKSRIMDEEGCLGSIVKVLRFGL----TTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTP 531 (715)
Q Consensus 458 nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~ 531 (715)
-++.+++.|..+. .+...--|--+|.... -+-.|-.+++++..|...++ .-..+.+ .+.||..++.+..|++
T Consensus 82 cvAshpetr~~Fl-~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~Gse 159 (268)
T 2fv2_A 82 CVASHPETRSAFL-AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSE 159 (268)
T ss_dssp HHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCH
T ss_pred HHHcCcchhhHHH-HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccH
Confidence 8899999999999 7776666666676531 13578899999999987554 3333445 7899999999999999
Q ss_pred hHHHHHHHHHHHhhcCCccHHHHHHh--------CChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhh
Q 038217 532 RGKKDAVTALFNLSTHTDNCVRMIEA--------GAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGE 595 (715)
Q Consensus 532 ~~~~~A~~aL~nLs~~~~n~~~iv~a--------G~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~ 595 (715)
-.|.-|.-.+..+-.++.+-..+... .++..++.-+. ++.+..+.+.+-..|+.++.++.++.+
T Consensus 160 lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 160 LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999988887766544333221 23333444442 457788888888888888888887764
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.013 Score=50.19 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCcCccCcc-cccCcee--CCCccHhhHHHHHHHHH
Q 038217 290 KDFCCPIMLD-LMRDPVI--ISTGQTYDRRSIARWME 323 (715)
Q Consensus 290 ~~~~CpIc~~-lm~dPv~--~~cghtfcr~cI~~w~~ 323 (715)
+++.|+||.+ ++.+||. +.|+|+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 4789998 79999999999998443
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.032 Score=58.62 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCcCccCcccccCceeC-CCccH--hhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHHHHH
Q 038217 291 DFCCPIMLDLMRDPVII-STGQT--YDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
.+.||+++..|..|+-- .|.|. |+...+...... +...||.|++.+...+|..+..+..++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 68999999999999966 89997 887777666543 67899999999999999999988887654
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.41 Score=52.85 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=161.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhc--c-----CC---HHHHHHHHHHHhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLS--T-----HN---PVAQENSVTAMLN 458 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~--s-----~d---~~~~~~A~~aL~n 458 (715)
..+.|+..|-+..|+.|-.|+-.||.+.+............ ...-.|+.+|. . +| ..++|.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788899999999999999999999887653210000111 22223333332 1 12 4688888888888
Q ss_pred hhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHH
Q 038217 459 LSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAV 538 (715)
Q Consensus 459 Ls~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~ 538 (715)
+ .+-+.. ..++..++..+... ..++|..++-.|.++ .+. +..-.++++.++..|.+.+++++..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DL---L~~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEF---VEDKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGG---CCCHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHH---HHHHHHHHHHHHhhcCCcccHHHHHHH
Confidence 7 543322 23455555555665 899999999999999 221 111257788888889888899999999
Q ss_pred HHHHHhhcCCccHHHHHHhCChHHHHHhhC--Ch--hHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHH
Q 038217 539 TALFNLSTHTDNCVRMIEAGAVTALVGALG--HE--GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRG 614 (715)
Q Consensus 539 ~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~--~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ 614 (715)
.+|.-++ .++....+ +..+-..|. |+ ......+.+|+.|++.+.. .......||.|..++++.-..+
T Consensus 321 etLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 9998888 23222222 222333332 22 3344556677777765531 1112245899999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH----HHHHhhhhhhccCCC
Q 038217 615 KENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLAR----VFQRCENAALHFGGL 682 (715)
Q Consensus 615 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~----~l~~~~~~~~~~~~~ 682 (715)
|..++.+|..+. . ..... -...+++-...+.+.+.+..+.+ ++..+-...|...|.
T Consensus 392 R~AVL~TL~tfL--~-~~~LR---------LIFQNILLE~neeIl~lS~~VWk~r~~Ll~~wi~L~MtPIGv 451 (800)
T 3oc3_A 392 RTSILNMVKNLS--E-ESIDF---------LVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGG 451 (800)
T ss_dssp HHHHHHHTTTCC--C-HHHHH---------HHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH--h-hhHHH---------HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999987776 1 11111 12356777888888888877764 333333444455554
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.65 Score=47.97 Aligned_cols=187 Identities=10% Similarity=0.033 Sum_probs=114.2
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCc---HHHHHHHhhc-CChhHHHHHHHHHHHhhcCCcc
Q 038217 475 CLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGA---VEALATLLRL-GTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 475 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~---I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n 550 (715)
.+..+.+++ .|+.+.+--+..+++-+..++.....+....+. +..+...+.. +.+..+-.++++++||-.++..
T Consensus 104 ~l~~l~kil--~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI--NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH--TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH--cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 344455554 345555666666666666555544444432221 1122333322 3456688999999999998888
Q ss_pred HHHHHHh--CChHHHHHhhC--ChhHHHHHHHHHHHHhCCc---chHHHHhhhCCcHHHHHHHhhc-CChHHHHHHHHHH
Q 038217 551 CVRMIEA--GAVTALVGALG--HEGVAEEAAGALALIVRQP---IGAAAVGEEEMAVTGLVGMMRC-GTPRGKENAVAAL 622 (715)
Q Consensus 551 ~~~iv~a--G~v~~Lv~lL~--~~~~~~~al~~L~~La~~~---e~~~~i~~~g~~I~~Lv~lL~~-~s~~~ke~A~~~L 622 (715)
+..+... -+++.+...+. +..++..+..++.|++... ..... ...++..+..++.. .+.+..-.++.+|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~---~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG---KAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH---HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8877653 33444444443 5688889999999997521 11111 11124444455544 5778888899999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFT-GTKRARRKAASLARV 668 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-~~~~~k~~A~~lL~~ 668 (715)
.+|...+ .++. .+.+..|+...+-.+... ..+++.+.|+.++.+
T Consensus 259 GtL~~~~-~~~~-~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 259 GTLISDD-SNAV-QLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTC-HHHH-HHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhCC-hhHH-HHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 9999874 3343 455547777777777765 478888998888765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.97 E-value=1.3 Score=44.76 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCC-hHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhhh
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGA-IPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRIM 470 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~-i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I~ 470 (715)
+.+...|-+.++..+.+|+..|......+++ ..+...+. ++.+.--+.+++..+...++.+|..+... .+.-..+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3556677778999999999999887755442 23332222 33333233467888988888888776321 11101111
Q ss_pred h--hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 471 D--EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 471 ~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
. ..-.+|.|+.-+... ...+|+.+-.+|..+.. +..-...++.+++-+++.+.+.+..++..|..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 0 134789998888666 77888888888877753 1221346777888888888999999998888875432
Q ss_pred ccHHHHHHhCCh---HHHHHhhC--ChhHHHHHHHHHHHHh
Q 038217 549 DNCVRMIEAGAV---TALVGALG--HEGVAEEAAGALALIV 584 (715)
Q Consensus 549 ~n~~~iv~aG~v---~~Lv~lL~--~~~~~~~al~~L~~La 584 (715)
+.. ...++ +.+..+++ |..++..|+.++..+-
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 221 24568 99999996 6689999998888653
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=93.48 E-value=0.053 Score=56.83 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCcCccCcccccCceeC-CCccH--hhHHHHHHHHHh-CCCCCCCCccccccCCCCccHHHHHHHHH
Q 038217 290 KDFCCPIMLDLMRDPVII-STGQT--YDRRSIARWMEE-GHRTCPKTGQMLVHDRLVPNRALRNLIVQ 353 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~-~cght--fcr~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~ 353 (715)
=.+.||++...|..|+-- .|.|. |+...+...... +...||.|++.+...+|..+..+..++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 368999999999999975 89997 888777776654 57899999999999999999998887765
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.065 Score=53.46 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCcCccCcccccCceeC-CCccHhhHHHHHHHHHh-CCCCCCCCccccccC
Q 038217 291 DFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEE-GHRTCPKTGQMLVHD 339 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~-~~~~CP~c~~~l~~~ 339 (715)
-..|.||.++...-+.- .|++.|...|+.+|++. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999988855544 49999999999999986 357999999876543
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=3.2 Score=43.02 Aligned_cols=197 Identities=14% Similarity=0.066 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.+.+..|+..|..-+.+.+..+.....++.+.....+...++- .--..|..|+.. +++++--++-..|.-+..++.-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4577888888889999999999998888887765443332221 122222233322 4667777778888888888887
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
...|. ..+.+..+.+.++.+ +-++-..|.+++..|-. +......... -...+...-+||.+++-=++..++..|.
T Consensus 157 a~~iL-~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 157 AKIIL-WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHH-HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 77777 777888999999888 99999999999987744 3322222221 1235667778899999999999999999
Q ss_pred HhhcCCccHHHHHHh----CChHHHHHhhCC--hhHHHHHHHHHHHHhCCc
Q 038217 543 NLSTHTDNCVRMIEA----GAVTALVGALGH--EGVAEEAAGALALIVRQP 587 (715)
Q Consensus 543 nLs~~~~n~~~iv~a----G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~ 587 (715)
.|-.+..|-.-|... .-+..++.+|+| ..++-+|..++...+.+|
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999988877654 457888888874 589999999999876554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.39 E-value=2.4 Score=50.95 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc------cCCHHHHHHHHHHHhhhhcCchhhhhhh----hhcC
Q 038217 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS------THNPVAQENSVTAMLNLSIYDKNKSRIM----DEEG 474 (715)
Q Consensus 405 ~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~d~~~~~~A~~aL~nLs~~~~nk~~I~----~~~g 474 (715)
..+..|...|..++.... ..+.. -.++.+-..|. +.+...++.|+.++..++..-..+..-+ ....
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 346667777777775532 11111 12333334454 4677889999999999975421111000 0002
Q ss_pred cHHH----HHHHHhcC--CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 475 CLGS----IVKVLRFG--LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 475 ~i~~----Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
..+. ++..|... ..+-+|..|+++|..++..- ..... ...++.+++.|.+.+..++..|+.+|.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 2222 23334443 26788999999999997642 22222 457888888888777889999999999998742
Q ss_pred c---------cHHHHHH--hCChHHHHHhhCCh-----h--HHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhc
Q 038217 549 D---------NCVRMIE--AGAVTALVGALGHE-----G--VAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRC 609 (715)
Q Consensus 549 ~---------n~~~iv~--aG~v~~Lv~lL~~~-----~--~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~ 609 (715)
+ .+..+.. ...++.|+.++... . ..+.++.+|..++.. .+.-..... . .++.|+..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~-l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-Q-LLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-H-HHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-H-HHHHHHHHHHH
Confidence 1 1222211 13344455555321 1 234555555554431 111111111 1 14444443332
Q ss_pred -----CChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 610 -----GTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 610 -----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.++..+..+..+|..++...+.+....+.. .+++.+..++.+........+-.++..+-
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 345667778888888887644444444433 46888888887765444444544444443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.22 E-value=7.9 Score=36.63 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHhhhhcCchhh
Q 038217 388 NRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLS-THNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 388 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
++..+..++..|..+-|-+|.+|+..|..+++.-++...-+. ..|+-+|+ +.....-..-..++..++.. +
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i---~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKE---K 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHH---C
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHh---C
Confidence 456788899999999999999999999999988887766544 34555554 44544434455667766643 2
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..++ .+.+|.+..=..-| ++..+.+...+|..++.... ..+ .+.+..+..++.+.+..-+-.|+..+..|
T Consensus 102 Pe~v--~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltskd~~Dkl~aLnFi~al-- 171 (253)
T 2db0_A 102 PELV--KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSKNREDKLTALNFIEAM-- 171 (253)
T ss_dssp HHHH--HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCSSHHHHHHHHHHHHTC--
T ss_pred HHHH--HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHH--
Confidence 3344 45677777777778 99999999999999876432 223 34667788888876655555666665544
Q ss_pred CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCc-chHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 038217 547 HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQP-IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623 (715)
Q Consensus 547 ~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~-e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~ 623 (715)
.+|..+-+. -.+|.|..+|. |+-++..++.+|.++|... .-|.. |...++-+...|...+......|.
T Consensus 172 -Gen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-------i~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 172 -GENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-------VIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp -CTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred -hccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445544332 36788888885 5678888999999998743 33333 233344456667777766666666
Q ss_pred HHHhc
Q 038217 624 ELCRS 628 (715)
Q Consensus 624 ~L~~~ 628 (715)
.+..-
T Consensus 243 rl~l~ 247 (253)
T 2db0_A 243 RLLLL 247 (253)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.06 E-value=2.9 Score=41.20 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=97.4
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc----C-------CHHHHHHHHHHHhhhhc
Q 038217 395 LIQQLANGS-PRAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST----H-------NPVAQENSVTAMLNLSI 461 (715)
Q Consensus 395 Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s----~-------d~~~~~~A~~aL~nLs~ 461 (715)
.|+.|+++. .+...+.+..|+...+.++.. -..| ..||+..|+.+|.. + +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 456665543 222334566666555554322 2233 46888888888753 1 45678889999999988
Q ss_pred CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHHh---------cccCcHHHHHHHhhc-
Q 038217 462 YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKIA---------DESGAVEALATLLRL- 528 (715)
Q Consensus 462 ~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I~---------~~~g~I~~Lv~LL~~- 528 (715)
+..+...++...+++..|+..|.+. ...++..++.+|..++..++ . ...+. ....-+..+++.+++
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 8777777775788999999999877 88999999999888776543 2 22221 113456667777764
Q ss_pred CChhHHHHHHHHHHHhhcCCc
Q 038217 529 GTPRGKKDAVTALFNLSTHTD 549 (715)
Q Consensus 529 ~~~~~~~~A~~aL~nLs~~~~ 549 (715)
++.+.+..++..+-.|...++
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 334555555555555555443
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=91.77 E-value=4.5 Score=43.12 Aligned_cols=171 Identities=14% Similarity=0.149 Sum_probs=112.3
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhh
Q 038217 394 LLIQQLANGS-PRAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 394 ~Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs 460 (715)
..|..|.++. .+...+.+..|+...+.++-. -..|. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4456666553 333345677777666555433 23344 6788999998852 24578888999999998
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHH----------hcccCcHHHHHHHhh
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKI----------ADESGAVEALATLLR 527 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I----------~~~~g~I~~Lv~LL~ 527 (715)
.+..+...++.....+..|+..|.+. ...++..|+.+|..++..++ + ...+ ++ ..-+..++..|.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHH
Confidence 88877777775788999999999887 88999999999988776543 2 2222 22 456778888887
Q ss_pred cC-ChhHHHHHHHHHHHhhcCCc-------cHHHHHHhCChHHHHHhhC
Q 038217 528 LG-TPRGKKDAVTALFNLSTHTD-------NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 528 ~~-~~~~~~~A~~aL~nLs~~~~-------n~~~iv~aG~v~~Lv~lL~ 568 (715)
++ +.+.+..++..+-.+...++ -|..+...|..+.+- -|+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~-~lr 274 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELR 274 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH-HHT
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH-HHh
Confidence 63 45666666666555655443 234445667555444 454
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.64 E-value=2.4 Score=42.78 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=116.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhhcCch---hhhhhhhh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--
Q 038217 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDK---NKSRIMDE-EGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-- 507 (715)
Q Consensus 434 i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~---nk~~I~~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-- 507 (715)
+| |-.-|.+.+...+..|+..|..+..... ........ ....+.+-..+... +..+...++.+|..+...-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence 44 5567889999999999999988754321 11111101 23445556666655 88899999999988764211
Q ss_pred ---hHH-HHhcccCcHHHHHHH-hhcCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHH
Q 038217 508 ---YKK-KIADESGAVEALATL-LRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGAL 580 (715)
Q Consensus 508 ---~~~-~I~~~~g~I~~Lv~L-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L 580 (715)
+.. .... ...++.|+.- +.+.....+..|..+|..++........+ +..++..++ ++.++..++..|
T Consensus 90 ~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHH
Confidence 111 1112 4577888754 66666788888888887776533322222 344555564 788999999988
Q ss_pred HHHhCC--cc--hHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCH
Q 038217 581 ALIVRQ--PI--GAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGA 631 (715)
Q Consensus 581 ~~La~~--~e--~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 631 (715)
..+... .. .-...+. . +++.+..++.+.++.+|+.|..++..+...-|+
T Consensus 164 ~~~l~~fg~~~~~~k~~l~-~-i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLP-E-LLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHH-H-HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhCCCcCCchhHHH-H-HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 877532 11 1111111 1 245667788888999999999999998876553
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.57 E-value=2.4 Score=43.67 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=84.4
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 394 LLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 394 ~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+...+. ++.+..+.-+++.+.|+.. ++..|..+... ..++.+...+.+.+..++..+.+.++|++....+....-
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 3444444 3456678889999999885 57788877753 344555555566789999999999999987532211111
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL 526 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL 526 (715)
....++..+..++....+.|+...++.+|.+|...+.....+....|.-..+-+..
T Consensus 230 ~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~ 285 (304)
T 3ebb_A 230 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYS 285 (304)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGG
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHH
Confidence 01224555666676655889999999999999876554444444234333333333
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.81 E-value=2.8 Score=42.23 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=108.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHh----cCCCHHHHHHHHHHHHHhcc---Cchh
Q 038217 436 HLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLR----FGLTTEARENAAATLFSLSA---VHEY 508 (715)
Q Consensus 436 ~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~----~~~~~e~~~~Aa~~L~~Ls~---~~~~ 508 (715)
.+...|.+.|..-+..|+..|...... +...+. ..+..++..+. .. +..+...++.+|..+.. ..++
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445556666666666666554221 222222 13333444332 33 66666666666655521 1111
Q ss_pred HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC
Q 038217 509 KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR 585 (715)
Q Consensus 509 ~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~ 585 (715)
+..-.+..-.+|.|+.-+.+..+.++..+-.+|..|+. ++.. .+++.++.-++ +...++.++..+..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 11111112478999988876667777777766655543 1211 24555666664 67888999988888754
Q ss_pred CcchHHHHhhhCCcH---HHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038217 586 QPIGAAAVGEEEMAV---TGLVGMMRCGTPRGKENAVAALLELCRSGGASATERV 637 (715)
Q Consensus 586 ~~e~~~~i~~~g~~I---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 637 (715)
. .|.. ...+ + +.+..++.+.+..+|+.|+.++..+....|+.+...+
T Consensus 197 ~-~G~~---~~~~-l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 197 N-AGIS---PLKS-LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp H-HCSG---GGGG-GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred h-cCCC---cccc-ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2 2222 2345 8 9999999999999999999999988877666655443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=88.21 E-value=1.3 Score=48.91 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=106.9
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHH
Q 038217 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510 (715)
Q Consensus 431 ~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 510 (715)
..++..|+..+.....+++..++-.|..+ +..+..-.++++.++.-|+.. +.+++..||.+|.-++ ..+..
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA-~p~~l- 332 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DEDIKLLSAELLCHFP-ITDSL- 332 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC-CSSTH-
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc-chhhH-
Confidence 34555666666778899999999999999 122111256778888888877 8999999999999998 11111
Q ss_pred HHhcccCcHHHHHHHhhcCC--hhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCC
Q 038217 511 KIADESGAVEALATLLRLGT--PRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQ 586 (715)
Q Consensus 511 ~I~~~~g~I~~Lv~LL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~ 586 (715)
...+..|.+.|.+.+ .......+.+|..|+..+.+. ......||.|..+|.. .+++..++.+|..+.
T Consensus 333 -----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-- 403 (800)
T 3oc3_A 333 -----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-- 403 (800)
T ss_dssp -----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--
T ss_pred -----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--
Confidence 223444455554422 345566677788887765320 0112678888888874 488888888887765
Q ss_pred cchHHHHhhhCCcHHHHHH-HhhcCChHHHHHHHHHH
Q 038217 587 PIGAAAVGEEEMAVTGLVG-MMRCGTPRGKENAVAAL 622 (715)
Q Consensus 587 ~e~~~~i~~~g~~I~~Lv~-lL~~~s~~~ke~A~~~L 622 (715)
.+.++..+-+ +|-...+++++.+..+.
T Consensus 404 ---------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 404 ---------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ---------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2222444444 55556777887776654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=88.18 E-value=25 Score=41.94 Aligned_cols=216 Identities=9% Similarity=0.064 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-----CChHH----HHHhhccC---CHHHHHHHHHHHhhhhcCchhhhh
Q 038217 401 NGSPRAKTVAAREIRLLAKTGKENRAFIAKA-----GAIPH----LRNLLSTH---NPVAQENSVTAMLNLSIYDKNKSR 468 (715)
Q Consensus 401 s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-----G~i~~----Lv~lL~s~---d~~~~~~A~~aL~nLs~~~~nk~~ 468 (715)
+.+|..+..|+..+..++......... ... ...+. ++..|.+. ++-++..|+++|..++..- .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 567888888999999987432100000 000 12222 33345555 8899999999999987643 122
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch---------hHHHHhc-ccCcHHHHHHHhhcCC---hh--H
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE---------YKKKIAD-ESGAVEALATLLRLGT---PR--G 533 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~I~~-~~g~I~~Lv~LL~~~~---~~--~ 533 (715)
.. ..+++.++..|... +..++..|+.+|.++....+ .+..+.. -...++.|+.++.... +. .
T Consensus 493 ~l--~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 493 QL--IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HH--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred HH--HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 22 45788888888876 78899999999999887422 2333322 1245666677776641 11 2
Q ss_pred HHHHHHHHHHhhc--CCccHHHHHHhCChHHHHHhh----C---ChhHHHHHHHHHHHHhCC--cchHHHHhhhCCcHHH
Q 038217 534 KKDAVTALFNLST--HTDNCVRMIEAGAVTALVGAL----G---HEGVAEEAAGALALIVRQ--PIGAAAVGEEEMAVTG 602 (715)
Q Consensus 534 ~~~A~~aL~nLs~--~~~n~~~iv~aG~v~~Lv~lL----~---~~~~~~~al~~L~~La~~--~e~~~~i~~~g~~I~~ 602 (715)
...++.+|..++. ..+.... +. ..++.|+..+ + +......++.+|..++.. ++....+ .... +|.
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~-~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~-~p~ 645 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPL-FP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSM-MPT 645 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGG-HH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHH-HHH
Confidence 3455556555432 1222211 11 1344444444 2 335555667777766553 2232222 3334 688
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHH
Q 038217 603 LVGMMRCGTPRGKENAVAALLELC 626 (715)
Q Consensus 603 Lv~lL~~~s~~~ke~A~~~L~~L~ 626 (715)
+..++........+.+..++..+.
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHH
Confidence 888887765566666776665554
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.91 E-value=20 Score=42.70 Aligned_cols=175 Identities=11% Similarity=0.008 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHh---h--cCChhHHHHHHHHHHHhhcCCccHHHHHHhCChHH
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLL---R--LGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTA 562 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~ 562 (715)
+...++.|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-........ .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 67789999999988876433211 23444455443 2 23678899999999988753221111111 24555
Q ss_pred HHHhhCChhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhc--CChHHHHHHHHHHHHHHhcCC-HHHHHHHH
Q 038217 563 LVGALGHEGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRC--GTPRGKENAVAALLELCRSGG-ASATERVL 638 (715)
Q Consensus 563 Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~ 638 (715)
|+..| ++.++..|+.++.+++. +.+..+.. .+..+..|..++.. .+...++.+..++..+...-+ ++....+.
T Consensus 551 l~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~ 627 (971)
T 2x1g_F 551 LVRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD 627 (971)
T ss_dssp HHHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55556 47889999999999984 33444432 12225556667776 357889999999988876532 22222221
Q ss_pred hc-CCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Q 038217 639 KA-PALVGLLQALLFTG--TKRARRKAASLARVFQR 671 (715)
Q Consensus 639 ~~-~g~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~ 671 (715)
.- ..++..+..++++. ++..+..+...+..|..
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 10 01233333444443 44455556666666654
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=86.93 E-value=12 Score=39.71 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=107.9
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHHHHhhChhh-HHHHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhh
Q 038217 394 LLIQQLANGSP-RAKTVAAREIRLLAKTGKEN-RAFIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLS 460 (715)
Q Consensus 394 ~Lv~~L~s~~~-~~~~~A~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs 460 (715)
..|..|.++.. +...+.+..|+...+.++-. -..| ..||+..|+.+|.. .+...+..++.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 44566665432 22234566666655555322 2223 36788888888752 14577888999999998
Q ss_pred cCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h-HHHHh---------cccCcHHHHHHHhhc
Q 038217 461 IYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y-KKKIA---------DESGAVEALATLLRL 528 (715)
Q Consensus 461 ~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~I~---------~~~g~I~~Lv~LL~~ 528 (715)
.+..+...+....+++..|+..|.+. ...++..++.+|..++..++ . ...+. ....-+..||+.+.+
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 88877777765788999999999876 88899899888887776543 2 22221 114466678888764
Q ss_pred C-ChhHHHHHHHHHHHhhcCCc-------cHHHHHHhCChHHHHHhhC
Q 038217 529 G-TPRGKKDAVTALFNLSTHTD-------NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 529 ~-~~~~~~~A~~aL~nLs~~~~-------n~~~iv~aG~v~~Lv~lL~ 568 (715)
+ +.+.+..++..+-.|...++ -|..+..+|..+. +.-|+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr 212 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR 212 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence 3 34556555555555555544 2445556665544 44443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=32 Score=35.56 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=150.3
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhh-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 038217 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMD-EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAV 505 (715)
Q Consensus 428 i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 505 (715)
+...+.+..|+..|..=+.+.+..++.+..++.... +++...+. -..--+.|.-++..-.+.+.--.+-..|+....+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 455688999999999889999999999999986654 33322220 0112223333333322456667778888999998
Q ss_pred chhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC---hHHHHHhhCCh--hHHHHHHHH
Q 038217 506 HEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA---VTALVGALGHE--GVAEEAAGA 579 (715)
Q Consensus 506 ~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~---v~~Lv~lL~~~--~~~~~al~~ 579 (715)
+.....|.. .+.+..+.+.+..++=+...+|..++..|-. +......++..+. +...-.+|.++ -.+..++..
T Consensus 154 e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 888888877 7889999999988888889999999887765 4445555655543 55566677643 567889999
Q ss_pred HHHHhCCcchHHHHhh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHh
Q 038217 580 LALIVRQPIGAAAVGE---EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG--GASATERVLK 639 (715)
Q Consensus 580 L~~La~~~e~~~~i~~---~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~ 639 (715)
|..|-.+..+...+.+ .+.-+..++.+|++.+..+|-.|-.+..-+..+. ++.+...+..
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 297 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence 9998777777666533 3323788888999999999999999988777765 3456655555
|
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=86.57 E-value=0.68 Score=37.82 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|.||++-.- +|.+. .|+...||.|++-=.+.|+..||.|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 458999998632 34444 6888889999998888999999999987753
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=86.30 E-value=5.2 Score=43.45 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=71.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHH
Q 038217 399 LANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGS 478 (715)
Q Consensus 399 L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~ 478 (715)
...|+..+++-|+.-|....+.-|+.... +|..++.|..+.|..++..|+..|-.+|.+ ++-. .+...
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~------kiaDv 104 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP------RVADI 104 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH------HHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh------hHHHH
Confidence 34678899999999999999988877544 577899999999999999999999999988 4422 45567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc
Q 038217 479 IVKVLRFGLTTEARENAAATLFSLSA 504 (715)
Q Consensus 479 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 504 (715)
|+++|+.. +.......-.+|..|-.
T Consensus 105 L~QlLqtd-d~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 105 LTQLLQTD-DSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHh
Confidence 89999987 65555555555555433
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.38 E-value=16 Score=35.69 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=94.3
Q ss_pred cCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 473 EGCLGSIVKVLRF----G------LTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 473 ~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
.+|+..|+.+|.. + .+.+....+..+|..+..+......+...++++..|+..|...++.+++.++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4567777777643 1 12455678889999998888877777777899999999998888999999999999
Q ss_pred HhhcCCc--c-HHHHHHh----------CChHHHHHhhCC---hhHHHHHHHHHHHHhCCcc---hHHHHh---hhCCcH
Q 038217 543 NLSTHTD--N-CVRMIEA----------GAVTALVGALGH---EGVAEEAAGALALIVRQPI---GAAAVG---EEEMAV 600 (715)
Q Consensus 543 nLs~~~~--n-~~~iv~a----------G~v~~Lv~lL~~---~~~~~~al~~L~~La~~~e---~~~~i~---~~g~~I 600 (715)
.+|..++ + ...+.++ .-+..++..|.+ .+.+..++..+-.+...++ -|..+. ..-| +
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l 200 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 200 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-h
Confidence 9998664 5 6665554 245667777752 3555556666655555433 233332 2344 6
Q ss_pred HHHHHHhhc-CChHH
Q 038217 601 TGLVGMMRC-GTPRG 614 (715)
Q Consensus 601 ~~Lv~lL~~-~s~~~ 614 (715)
..+++-++. .++..
T Consensus 201 ~~il~~l~~~~~~~L 215 (233)
T 2f31_A 201 HQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhccCCHHH
Confidence 666665554 34443
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=85.33 E-value=6 Score=40.97 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHhhhhcCchh-hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhh-cCChh
Q 038217 455 AMLNLSIYDKN-KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLR-LGTPR 532 (715)
Q Consensus 455 aL~nLs~~~~n-k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~-~~~~~ 532 (715)
-|+||..++.| -..++ ..+++..+..+++-. +.++.......|...|.....+..-. ...+|.++..+. .++++
T Consensus 265 DLL~LLmHdSnAIDGFV-k~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFV-RSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHCCSHHHHHHHH-HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhccccccccee-ecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcc
Confidence 35666666655 78888 999999999999888 88999999999998887665443322 367888888775 46678
Q ss_pred HHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhh
Q 038217 533 GKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGAL 567 (715)
Q Consensus 533 ~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL 567 (715)
+.-.....|.|...+.. .+...+..|+|+.|...+
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 88889999999998876 566677889999998876
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.23 E-value=9 Score=45.82 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh---c--cCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCc
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL---S--THNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGC 475 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~--s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~ 475 (715)
.++..+..|+..+..++..-.... ...++.++.++ . ..++.++..++++|..++..- .+. ... ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--HHH
Confidence 577888889999988885432211 13444444433 2 247899999999999887532 222 222 356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcC--Ccc
Q 038217 476 LGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLG--TPRGKKDAVTALFNLSTH--TDN 550 (715)
Q Consensus 476 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~--~~n 550 (715)
++.|+..|. ..++..|+.++.+|+. +.+..+.. -.+.+..|..++..+ +...+..+..++..++.. .+.
T Consensus 548 l~~l~~~l~----~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 548 INLLVRGLN----SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHhC----hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 777777773 3678999999999984 23333432 134566666777764 356777788888877653 233
Q ss_pred HHHHHHhCChHHHHHhh----C----ChhHHHHHHHHHHHHh---CC--c---chH------H--HHhhhCCcHHHHHHH
Q 038217 551 CVRMIEAGAVTALVGAL----G----HEGVAEEAAGALALIV---RQ--P---IGA------A--AVGEEEMAVTGLVGM 606 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL----~----~~~~~~~al~~L~~La---~~--~---e~~------~--~i~~~g~~I~~Lv~l 606 (715)
+...+. ..+++++..+ . +++........|..|+ .. + ++. . .-..... ++.+..+
T Consensus 622 ~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~~ 699 (971)
T 2x1g_F 622 IPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT-MPIFKRI 699 (971)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT-HHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH-HHHHHHH
Confidence 333322 2344555443 2 2222233333333332 11 0 000 0 0111233 6666666
Q ss_pred hhc--CChHHHHHHHHHHHHHHhc
Q 038217 607 MRC--GTPRGKENAVAALLELCRS 628 (715)
Q Consensus 607 L~~--~s~~~ke~A~~~L~~L~~~ 628 (715)
+.. .++...+.++.++..++..
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHh
Confidence 654 3678899999988887653
|
| >1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A | Back alignment and structure |
|---|
Probab=81.34 E-value=2.2 Score=38.56 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhc-----C---CHHHHHHHHHHHHHHHH
Q 038217 600 VTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFT-----G---TKRARRKAASLARVFQR 671 (715)
Q Consensus 600 I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s-----~---~~~~k~~A~~lL~~l~~ 671 (715)
+..|.+-|...++..+-.|+.+|..||.++.+.++..+.+....|..|.++-.- | ...++.+|..|+.+|.+
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 456666666788999999999999999999888888888855555555554432 2 24678999999999987
Q ss_pred hhhh
Q 038217 672 CENA 675 (715)
Q Consensus 672 ~~~~ 675 (715)
....
T Consensus 131 ~~~~ 134 (140)
T 1vdy_A 131 EENG 134 (140)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 5444
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=30 Score=35.87 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCC
Q 038217 408 TVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGL 487 (715)
Q Consensus 408 ~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~ 487 (715)
..+..-| ++.-++...-.-+++.+|+..+.......+.++...+...|+..|....-...- -...+|-++..+....
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCC
Confidence 3444444 444466677888999999999999999999999999999988887554332222 2567888888886543
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhc
Q 038217 488 TTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 488 ~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+.++.....+.|.+...+....+.+.-..|+|+.|-+.+..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 88999999999999987776544444338999999988754
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=80.58 E-value=37 Score=40.26 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhh---ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcH
Q 038217 400 ANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL---STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCL 476 (715)
Q Consensus 400 ~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i 476 (715)
.+.++..+..++..+..++..-... +...++.++..| ..+++.++..+++++..++..-....... ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 5568888889999999988653221 123345555544 23578899999999998876422212334 5788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhc-ccCcHHHHHHHhhcC--ChhHHHHHHHHHHHhhcCC--ccH
Q 038217 477 GSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIAD-ESGAVEALATLLRLG--TPRGKKDAVTALFNLSTHT--DNC 551 (715)
Q Consensus 477 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~-~~g~I~~Lv~LL~~~--~~~~~~~A~~aL~nLs~~~--~n~ 551 (715)
+.|+..|.. ..++..|+.+|..++.. .+..+.. ....+..|..++..+ +...+..+..++..+.... +..
T Consensus 532 ~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 532 PLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 999988854 57899999999999842 2222321 023444555566543 3567778888888887543 233
Q ss_pred HHHHHhCChHHHHHhh
Q 038217 552 VRMIEAGAVTALVGAL 567 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL 567 (715)
...++ ..++++...+
T Consensus 607 ~~~~~-~l~~~l~~~l 621 (963)
T 2x19_B 607 LKNLH-SLISPYIQQL 621 (963)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 33222 2444444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 715 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 2e-25 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-08 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 6e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-05 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 4e-15 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 2e-14 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-11 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 8e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-04 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 6e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 4e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-06 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 8e-07 | |
| d1jm7b_ | 97 | g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie | 3e-06 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 0.001 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 0.002 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 97.8 bits (243), Expect = 2e-25
Identities = 40/73 (54%), Positives = 56/73 (76%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
P+ F CPI L+LM+DPVI+STGQTY+R SI +W++ GH+TCPK+ + L+H L PN L
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 348 RNLIVQWCTAHGI 360
++LI WC ++GI
Sbjct: 65 KSLIALWCESNGI 77
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.8 bits (201), Expect = 1e-19
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
IP C I +LMR+P I +G TYDR+ I ++ P T L ++L+PN A+
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 348 RNLIVQWCTAHGIPYD 363
+ +I + + +G D
Sbjct: 64 KEVIDAFISENGWVED 79
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 3e-16
Identities = 34/187 (18%), Positives = 51/187 (27%), Gaps = 24/187 (12%)
Query: 399 LANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLN 458
L S A + N A + + GAIP L LL + Q +
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 459 LSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGA 518
+ + E E L L+ + I
Sbjct: 424 QQFVEGVRME---------------------EIVEGCTGALHILARDVHNRIVIRGL-NT 461
Query: 519 VEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGAL--GHEGVAEEA 576
+ LL ++ A L L+ + + GA L L +EGVA A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
Query: 577 AGALALI 583
A L +
Sbjct: 522 AAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (191), Expect = 9e-16
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 431 AGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTE 490
AIP L LL+ + V + + LS + ++ IM + +IV+ ++ E
Sbjct: 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD- 549
A TL +LS E I +SG + AL +L A+T L NL H +
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 550 NCVRMIEAGAVTALVGALGH 569
+ + AG + +V L
Sbjct: 135 AKMAVRLAGGLQKMVALLNK 154
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 24/198 (12%)
Query: 430 KAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTT 489
+P + LL + + ++ + E+G + +V++L
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA-HQ 411
Query: 490 EARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD 549
+ + + V + + E AL L+
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEG--------------------CTGALHILARDVH 451
Query: 550 NCVRMIEAGAVTALVGAL--GHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMM 607
N + + + V L E + AAG L + + A A+ E A L ++
Sbjct: 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATAPLTELL 510
Query: 608 RCGTPRGKENAVAALLEL 625
A A L +
Sbjct: 511 HSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (150), Expect = 9e-11
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 3/170 (1%)
Query: 386 EANRATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STH 444
E L + L + AA + L+K A + + + + +T+
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 445 NPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA 504
+ + + NLS + + I + G + ++VK+L A TL +L
Sbjct: 73 DVETARCTAGTLHNLSHHREGLLAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLL 130
Query: 505 VHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRM 554
E K +G ++ + LL + L L+ +
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 508 YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMIEA-GAVTALVGA 566
Y+ + A+ L LL A + LS + ++ + V+A+V
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 567 LGHEG---VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALL 623
+ + A AG L + G A+ + + LV M+ A+ L
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKMLGSPVDSVLFYAITTLH 126
Query: 624 ELCR 627
L
Sbjct: 127 NLLL 130
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 5/132 (3%)
Query: 414 IRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEE 473
++LL + ++ + + G + V E A+ L+ N+ I
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV--EGCTGALHILARDVHNRIVIR-GL 459
Query: 474 GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRG 533
+ V++L + AA L L+ E + I E GA L LL
Sbjct: 460 NTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELLHSRNEGV 517
Query: 534 KKDAVTALFNLS 545
A LF +S
Sbjct: 518 ATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 6e-08
Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 3/181 (1%)
Query: 375 FASALPSRAAVEANRATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGA 433
+ SR A+ + +++ + N A + L+ +E I K+G
Sbjct: 44 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGG 102
Query: 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARE 493
IP L +L + ++T + NL ++ + + G L +V +L +
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLA 161
Query: 494 NAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR 553
L L+ ++ K I SG +AL ++R T + + + + +
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 554 M 554
Sbjct: 222 A 222
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 372 AESFASALPSRAAVEANRATA------ELLIQQLANGSPRAKTVAAREIRLLAKTGKENR 425
E AL A NR L +Q L + + VAA + LA+ KE
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAA 494
Query: 426 AFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLS 460
I GA L LL + N + + +S
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.6 bits (189), Expect = 1e-15
Identities = 36/248 (14%), Positives = 78/248 (31%), Gaps = 15/248 (6%)
Query: 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQE 450
T +Q L++ + + + A I+ + + + + G I L +LL + N Q+
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 451 NSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKK 510
+ A+ NL + + V +LR E ++ L++LS+ E K+
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 511 KIADE--------------SGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRMI- 555
++ + + P +A L NLS+ M
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 556 EAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGK 615
+G + +L+ + + A + + + T +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 616 ENAVAALL 623
E +
Sbjct: 243 EKSSTGCF 250
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 7e-13
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 424 NRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVL 483
++ K +P + LL + N + + + N+S + + + ++L
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM--GNQVFPEVTRLL 380
Query: 484 RFGLTT-----EARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRL-GTPRGKKDA 537
+ +A T+ +L A K S + + L R +P+ + A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 538 VTALFNLSTHTD 549
L ++ + +
Sbjct: 441 RLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 33/252 (13%), Positives = 70/252 (27%), Gaps = 19/252 (7%)
Query: 346 ALRNLIVQWCTAHGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSPR 405
+ + + + N T + +N S +
Sbjct: 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDK 256
Query: 406 AKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL-STHNPVAQENSVTAMLNLSIYDK 464
+T + ++ + AI NL+ + E A+ NL+
Sbjct: 257 MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316
Query: 465 NKSR-----IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAV 519
S I +E L I ++L+ G ++ + A+ L ++S + + +
Sbjct: 317 LMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLHRVMGN--QVF 373
Query: 520 EALATLLRLGTPRGKKD------AVTALFNLST-HTDNCVRMIEAGAVTALVGAL---GH 569
+ LL T A + NL + + + ++
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433
Query: 570 EGVAEEAAGALA 581
AE A L+
Sbjct: 434 PKAAEAARLLLS 445
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 11/229 (4%)
Query: 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRAL 347
+P + STG ++ + L + A+
Sbjct: 226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285
Query: 348 RNLIVQWCTA---HGIPYDPPETTDVSAESFASALPSRAAVEANRATAELLIQQLANGSP 404
R + + + +++A + + + + L +G+
Sbjct: 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345
Query: 405 RAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLL------STHNPVAQENSVTAMLN 458
A + +++ + P + LL ++++ ++ + N
Sbjct: 346 DVVRSGASLLSNMSRH-PLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403
Query: 459 LSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE 507
L ++ L +I+ + R + +A E A L + + E
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 4e-15
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 277 ITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQML 336
+ Q+ ET+ +F PIM LM DPV++ + + RS +T P L
Sbjct: 8 LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67
Query: 337 VHDRLVPNRALRNLIVQWCTAH 358
D++ PN L+ I +W
Sbjct: 68 TMDQIRPNTELKEKIQRWLAER 89
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 2e-14
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 279 QEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWME--EGHRTCPKTGQML 336
+E+ ++ K CPI L+L+++PV + + + + + +G CP +
Sbjct: 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
Query: 337 VHDRLVPNRALRNLI 351
L + L+
Sbjct: 69 TKRSLQESTRFSQLV 83
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 2e-11
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 277 ITQEIAETFLSIPKDF-CCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP 330
+TQE E + + F C I + +D I G + W E + CP
Sbjct: 8 VTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP 62
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 5/167 (2%)
Query: 389 RATAELLIQQLANGSPRAKTVAAREIR-LLAKTGKENRAFIAKAGAIPHLRNLLS-THNP 446
+ E +++ + + + ++ A + R LL++ + I +AG IP + L T
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 447 VAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH 506
Q S A+ N++ +++ + + G + L E A L +++
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAI-PAFISLLASPHAHISEQAVWALGNIAGDG 130
Query: 507 EYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVR 553
+ + + GA++ L LL P A L NL+ N R
Sbjct: 131 SAFRDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCR 175
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI-MDEEGCLGSIVKVLRFGLTTE 490
++ + ++++N +Q + A L +K + G + V L +
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72
Query: 491 ARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550
+ +A L ++++ + K + GA+ A +LL + AV AL N++
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
Query: 551 CVRMI 555
++
Sbjct: 133 FRDLV 137
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 7e-06
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 5/116 (4%)
Query: 516 SGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN--CVRMIEAGAVTALVGALGHE--- 570
+ +VE + + + A A L + +I AG + V LG
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 571 GVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELC 626
+ E+A AL I + A+ + ++ E AV AL +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 8e-06
Identities = 49/332 (14%), Positives = 100/332 (30%), Gaps = 50/332 (15%)
Query: 393 ELLIQQLANGS-PRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQEN 451
+ L + +A + +A E + GAIP +LL++ + E
Sbjct: 59 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 118
Query: 452 SVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRF----GLTTEARENAAATLFSLSAVHE 507
+V A+ N++ ++ + G + ++ +L L N TL +L
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178
Query: 508 YKKKIADESGAVEALATLLRLGTPRGKKDAVTA--------------------------- 540
+ + L LL P D+ A
Sbjct: 179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 238
Query: 541 ----------------LFNLSTHTDNCVRMIEAGAVTALVGAL--GHEGVAEEAAGALAL 582
++ + ++I+AGA+ L + +EA ++
Sbjct: 239 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298
Query: 583 IVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA 642
I V LVG++ + ++ A A+ G ++
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 358
Query: 643 LVGLLQALLFTGTKRARRKAASLARVFQRCEN 674
+ L+ L TK + +++ +FQ E
Sbjct: 359 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 390
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (93), Expect = 6e-04
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 393 ELLIQQLANGSPRAKTVAAREIRLLAKTG-KENRAFIAKAGAIPHLRNLLSTHNPVAQEN 451
L+ L+ + + AA I G E ++ G I L NLLS + +
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 452 SVTAMLNL------SIYDKNKSRIMDEEGCLGSI 479
+ A+ N+ + S +++E G L I
Sbjct: 377 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 410
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.5 bits (123), Expect = 6e-09
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 276 LITQEIAETFLSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQM 335
L+ + F+ K C I ++ DPV S + R I R ++ CP
Sbjct: 11 LLAVDFPAHFV---KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYP 67
Query: 336 LVHDRLV-PNRALRNLI 351
L P ++ N++
Sbjct: 68 CFPTDLESPVKSFLNIL 84
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.9 bits (120), Expect = 4e-07
Identities = 28/192 (14%), Positives = 69/192 (35%), Gaps = 4/192 (2%)
Query: 434 IPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSR-IMDEEGCLGSIVKVLRFGLTTEAR 492
+P + L++ + Q ++ + + ++ + G + +V+ +R +
Sbjct: 78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137
Query: 493 ENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCV 552
AA L ++++ + K+ ++ AV LL G+ K+ A+ AL N++ + +
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197
Query: 553 RMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRC 609
+ + L + A L+ + R A+ L ++
Sbjct: 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 257
Query: 610 GTPRGKENAVAA 621
+A A
Sbjct: 258 MDTETLVDACWA 269
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 1/161 (0%)
Query: 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSV 453
L+ N + AA + +A + A A+P LL T + +E ++
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183
Query: 454 TAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIA 513
A+ N++ + R + + L A TL +L + + +
Sbjct: 184 WALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242
Query: 514 DESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNCVRM 554
S A+ LA L+ DA A+ LS ++
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 283
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (104), Expect = 8e-07
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 293 CCPIMLDLMRDPVIIS-TGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
C I + R PV+ + +++ + +++++ P T + L + +V
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 54
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 3e-06
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 287 SIPKDFCCPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNR 345
+ K C +++R+PV + + ++ + G C L NR
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINR 74
Query: 346 ALRNLI 351
L ++I
Sbjct: 75 QLDSMI 80
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 294 CPIMLDLMRDPVIIST-GQTYDRRSIARWMEEGHRTCP 330
CPI L+ + + + I RW+ + + TCP
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCP 44
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.9 bits (80), Expect = 0.002
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 294 CPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCP 330
C + P ++ T + CP
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCP 41
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.87 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.85 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.85 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.84 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.81 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.8 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.74 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.71 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.68 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.46 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.4 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.37 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.33 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 99.01 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.99 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.88 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.75 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.72 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.39 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.3 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.3 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.26 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.17 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.16 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.14 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.92 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.77 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.59 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.55 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.54 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.44 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.42 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.36 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.26 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.19 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.11 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.95 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.86 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.84 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.54 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.47 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.08 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.82 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.83 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 91.63 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 91.37 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.51 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 87.11 | |
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 86.74 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.9e-22 Score=221.45 Aligned_cols=272 Identities=17% Similarity=0.129 Sum_probs=239.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~nk 466 (715)
...|+.|++.|++.+...+.+|+..|.++++. ...|..+... |+++.|+.+|.+ ++.++++.|+.+|.+|+.+++++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 45789999999999999999999999999975 5666666654 789999999976 67899999999999999999999
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH-HHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK-KKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
..|+ +.|+++.|+.+|+++ +.+++..|+++|.+|+.+.+.. ..+.. .|+|+.|+.+|+++++..+..++.+|.+|+
T Consensus 95 ~~i~-~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 171 (529)
T d1jdha_ 95 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence 9999 999999999999998 9999999999999999876654 44555 999999999999999999999999999999
Q ss_pred cCC-ccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 038217 546 THT-DNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAA 621 (715)
Q Consensus 546 ~~~-~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~ 621 (715)
... +++..++..|+++.|+.++. ++.+...+..++.+++.+++++..+.+.|+ ++.|+.++.+++...+.+|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~-~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T d1jdha_ 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhh-hhhHHHHhcccchhhhhhhhhH
Confidence 754 46777889999999999994 458889999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 622 LLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 622 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
|.+++..... .... .|+++.|+.++.++++.++..|..+|..+.
T Consensus 251 l~~ls~~~~~----~~~~-~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 251 LRNLSDAATK----QEGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHHHTTCTT----CSCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHhccccccc----hhhh-hhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence 9999865421 1222 578999999999999999999998888775
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.9e-21 Score=214.44 Aligned_cols=273 Identities=18% Similarity=0.155 Sum_probs=236.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-h
Q 038217 389 RATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-K 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k 466 (715)
.+.++.|+..|. +++.+.+..|+..|.+++. +++++..+.+.|++|.|+.+|++++++++.+|+++|.||+.+.++ +
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence 457899999997 5788999999999999995 689999999999999999999999999999999999999987765 6
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCC-hhHHHHHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGT-PRGKKDAVTALFNL 544 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A~~aL~nL 544 (715)
..+. ..|+++.|+.+|+++ +.+.+..++.+|.+|+..+. ++..+.. .|+++.|+.++...+ ...+..++.+|.||
T Consensus 137 ~~~~-~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l 213 (529)
T d1jdha_ 137 MAVR-LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHH-HHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHH-hcCCchHHHHHHHcc-ChHHHHHHHHHHHHHhhhhhHHHHHHHh-cccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 6777 999999999999998 99999999999999997655 5566666 899999999997655 57888999999999
Q ss_pred hcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 545 STHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 545 s~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+++++..+++.|+++.|+.++. +..+...++++|.+++..... .....|+ ++.|++++.++++..++.|+.+|
T Consensus 214 s~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~~~~~~-i~~Lv~ll~~~~~~~~~~a~~~L 290 (529)
T d1jdha_ 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGL-LGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hhhhhhc-chhhhhhcccccHHHHHHHHHHH
Confidence 999999999999999999999996 568999999999999754332 2233566 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLF--TGTKRARRKAASLARVFQ 670 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~--s~~~~~k~~A~~lL~~l~ 670 (715)
++|+.++ ...+..+.+ .|+++.|+.++. ++.+..+..|...|+.+.
T Consensus 291 ~~l~~~~-~~~~~~i~~-~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~ 338 (529)
T d1jdha_ 291 SNLTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHTTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred Hhhccch-hHHHHHHHH-hhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence 9999876 455556666 899999998774 457788888888888775
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=4.5e-20 Score=200.15 Aligned_cols=276 Identities=17% Similarity=0.196 Sum_probs=233.5
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCch-hhh
Q 038217 390 ATAELLIQQLA-NGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDK-NKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~-nk~ 467 (715)
|.++.|++.|+ +.+++.|..|++.|.+++..+++.+..+.+.|++|.|+.+|.+++.++++.|+++|.|++.+.. .+.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHH
Confidence 57999999997 4567889999999999998888999999999999999999999999999999999999987654 355
Q ss_pred hhhhhcCcHHHHHH-----------------------------------------------HHhcCCCHHHHHHHHHHHH
Q 038217 468 RIMDEEGCLGSIVK-----------------------------------------------VLRFGLTTEARENAAATLF 500 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~-----------------------------------------------lL~~~~~~e~~~~Aa~~L~ 500 (715)
.+. ..|+++.++. ++.++ +.+++..|+++|.
T Consensus 136 ~i~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~ 213 (434)
T d1q1sc_ 136 LVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAIS 213 (434)
T ss_dssp HHH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred HHH-HhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhc
Confidence 554 5555554444 33444 6788889999999
Q ss_pred HhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHH
Q 038217 501 SLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGALG--HEGVAEEAA 577 (715)
Q Consensus 501 ~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al 577 (715)
+|+..+.....+....|+++.|+.++.+++...+..|+.+|.+++...+ .+..+++.|+++.|+.+++ +++++..++
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~ 293 (434)
T d1q1sc_ 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 293 (434)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHH
Confidence 9988776555544448999999999999999999999999999998654 6778889999999999996 568999999
Q ss_pred HHHHHHhCCc-chHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCH
Q 038217 578 GALALIVRQP-IGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTK 656 (715)
Q Consensus 578 ~~L~~La~~~-e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~ 656 (715)
++|.+|+... +....+.+.|+ ++.++.++.+++++.+..|+.+|.+++.....+....+.+ .|+++.|+.++.++++
T Consensus 294 ~~L~~l~~~~~~~~~~i~~~~~-i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~d~ 371 (434)
T d1q1sc_ 294 WTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDT 371 (434)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHHTTSSCH
T ss_pred HHHhhhccccchhHHHHhhhhh-HHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhcCCCH
Confidence 9999998754 46667788888 9999999999999999999999999998876667777887 8999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038217 657 RARRKAASLARVF 669 (715)
Q Consensus 657 ~~k~~A~~lL~~l 669 (715)
.....+...+..+
T Consensus 372 ~~~~~~l~~l~~l 384 (434)
T d1q1sc_ 372 KIIQVILDAISNI 384 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988887655444
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.9e-20 Score=201.08 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=224.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC-chhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY-DKNKSRI 469 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~-~~nk~~I 469 (715)
+|+.||+.|++++++.|..|++.|.++|.+++++|..+.+.|+||.|+++|++++++++..|+.+|.||+.+ ++++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999964 5778999
Q ss_pred hhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-------------------------------------------
Q 038217 470 MDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH------------------------------------------- 506 (715)
Q Consensus 470 ~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~------------------------------------------- 506 (715)
. +.|+++.++.++.+..+.+++..|+++|.+|+..+
T Consensus 83 ~-~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 83 R-RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp H-HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred H-HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 8 99999999999977657778888888887776533
Q ss_pred -------------hhHHHHhcccCcHHHHHHHhhc---------------------------------------------
Q 038217 507 -------------EYKKKIADESGAVEALATLLRL--------------------------------------------- 528 (715)
Q Consensus 507 -------------~~~~~I~~~~g~I~~Lv~LL~~--------------------------------------------- 528 (715)
+++..+....|+++.|+.++++
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 2233333335677777665431
Q ss_pred ------------------------------------------------------CChhHHHHHHHHHHHhhcCCc-----
Q 038217 529 ------------------------------------------------------GTPRGKKDAVTALFNLSTHTD----- 549 (715)
Q Consensus 529 ------------------------------------------------------~~~~~~~~A~~aL~nLs~~~~----- 549 (715)
.++..+..+..++.+++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence 112333455666777765443
Q ss_pred -cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcC------ChHHHHHHHH
Q 038217 550 -NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCG------TPRGKENAVA 620 (715)
Q Consensus 550 -n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~------s~~~ke~A~~ 620 (715)
.+..+.+.|+++.|+.+++ ++.++..++.+|.+|+.+++++..+.+ ++ ++.++.++... +++.+..|+.
T Consensus 322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~-i~~li~~L~~~~~~~~~~~~v~~~a~~ 399 (457)
T d1xm9a1 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QV-FPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HT-HHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hh-HHHHHHHHhccccCcCCcHHHHHHHHH
Confidence 2334456799999999996 568999999999999999999888765 66 89999988652 4578999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhhh
Q 038217 621 ALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 621 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL~~l~~~~~ 674 (715)
+|.+|+..++ +.++.+.+ .|+++.|+.++.+. ++.+++.|..+|..|..+.+
T Consensus 400 ~L~~l~~~~~-~~~~~l~~-~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 400 TVRNLMASQP-QLAKQYFS-SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHTTCT-HHHHHHCC-HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHhcCCH-HHHHHHHH-CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 9999998774 45667776 89999999999875 78899999999998865443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=9e-20 Score=202.86 Aligned_cols=278 Identities=17% Similarity=0.122 Sum_probs=241.8
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhh
Q 038217 389 RATAELLIQQLAN-GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNK 466 (715)
Q Consensus 389 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk 466 (715)
.+.++.|+..|++ .+.+.+..|++.|.+++..++.....+.+.|+++.|+.+|.+++.++++.|+++|.|++.+. .++
T Consensus 118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r 197 (503)
T d1wa5b_ 118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197 (503)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence 3578999999984 57888999999999999888888889999999999999999999999999999999998765 668
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
..+. ..|+++.|+.++... +.+.+..++++|.+|+.............++++.|+.++.++++.....++++|.+|+.
T Consensus 198 ~~l~-~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~ 275 (503)
T d1wa5b_ 198 DYVL-QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 275 (503)
T ss_dssp HHHH-HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHH-hhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc
Confidence 8888 999999999999988 88999999999999997654333322226899999999999999999999999999998
Q ss_pred CCc-cHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcch-HHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 547 HTD-NCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIG-AAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 547 ~~~-n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~-~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
... ....+++.|+++.++.++. +..+...++.+|.+++...+. ...+.+.|+ ++.|..++.+.++..+..++++|
T Consensus 276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~-l~~l~~ll~~~~~~i~~~~~~~l 354 (503)
T d1wa5b_ 276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPKENIKKEACWTI 354 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHhcCCCHHHHHHHHHHH
Confidence 665 4567889999999999995 678999999999999886554 445667777 99999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 038217 623 LELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQR 671 (715)
Q Consensus 623 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~ 671 (715)
.+++.++ ......+.. .|+++.++.++.+++..++..|.+++..+..
T Consensus 355 ~nl~~~~-~~~~~~i~~-~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 355 SNITAGN-TEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHTTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc-HHHHHHHHH-ccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 9999876 556667777 8999999999999999999999988777654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=1.1e-19 Score=197.05 Aligned_cols=278 Identities=16% Similarity=0.188 Sum_probs=233.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCc-hh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKE-NRAFIAKAGAIPHLRNLLST-HNPVAQENSVTAMLNLSIYD-KN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~-~n 465 (715)
+.+|+.+++.|.|++++.+.+|+..|+++...+.. ....+.+.|++|.|+++|++ +++++|..|+++|.+++... ++
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~ 91 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence 34789999999999999999999999998754322 25678899999999999975 56889999999999998765 56
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCCh-----hHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTP-----RGKKDAVT 539 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~-----~~~~~A~~ 539 (715)
+..++ +.|+++.++.+|.++ +.+.++.|+++|.+++.+++ .+..+.. .|+++.|+.++...+. .....++.
T Consensus 92 ~~~i~-~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (434)
T d1q1sc_ 92 TKAVV-DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTW 168 (434)
T ss_dssp HHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred hhHhh-hccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHH-hhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence 88888 999999999999998 99999999999999988655 5666666 8999999999976542 34567788
Q ss_pred HHHHhhcCCcc-HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH-HHHhhhCCcHHHHHHHhhcCChHHH
Q 038217 540 ALFNLSTHTDN-CVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA-AAVGEEEMAVTGLVGMMRCGTPRGK 615 (715)
Q Consensus 540 aL~nLs~~~~n-~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~-~~i~~~g~~I~~Lv~lL~~~s~~~k 615 (715)
++.+++..... .......++++.|+.++. +++++..++++|.+|+..+... ..+...|+ ++.|+.++.++++..+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~Lv~ll~~~~~~~~ 247 (434)
T d1q1sc_ 169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATELPIV 247 (434)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC-HHHHHHHHTCSCHHHH
T ss_pred HHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhccc-chhcccccccchhhhh
Confidence 89999886543 333456688999999995 6789999999999999876544 45566666 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 616 ENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 616 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
..|+.+|.+++.++ +.....+.. .|+++.|..++.+.++.++..|..+|..+...
T Consensus 248 ~~al~~l~~l~~~~-~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 248 TPALRAIGNIVTGT-DEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hchhhhhhhHHhhh-hHHHHHHHh-ccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 99999999999876 556667777 89999999999999999999999988877653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=3.9e-19 Score=197.65 Aligned_cols=275 Identities=20% Similarity=0.182 Sum_probs=238.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhh-h
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNK-S 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk-~ 467 (715)
.|.++.++..|.+++.+.+..|++.|.+++.+++++|..+.+.|+++.|+.++.+.+..++.+++++|.|++.+.... .
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999876553 3
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchh-HHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEY-KKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST 546 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~ 546 (715)
... ..|+++.++.++.++ +.+.+..++++|.+|+..... ...+.. .|+++.|+.++.+++......|+.+|.|++.
T Consensus 241 ~~~-~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 241 WSV-VSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp HHH-HGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence 333 578999999999998 999999999999999976654 455666 8999999999999999999999999999998
Q ss_pred CCcc-HHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 038217 547 HTDN-CVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAAL 622 (715)
Q Consensus 547 ~~~n-~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L 622 (715)
+.+. ...++..|+++.|..++. ++.++..++++|.|++.. ++....+.+.|. ++.++.++.+++..++..|+.+|
T Consensus 318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~-l~~li~~l~~~~~~v~~~a~~~l 396 (503)
T d1wa5b_ 318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL-IPPLVKLLEVAEYKTKKEACWAI 396 (503)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccc-cchhHHhcccCChhHHHHHHHHH
Confidence 7664 445678899999999996 568999999999999774 556777888888 99999999999999999999999
Q ss_pred HHHHhcCC--HHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 623 LELCRSGG--ASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 623 ~~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
.+++..+. .+....+.. .|+++.|+.++.+.++.....+...+..
T Consensus 397 ~nl~~~~~~~~~~~~~l~~-~~~l~~l~~~L~~~d~~~~~~~L~~l~~ 443 (503)
T d1wa5b_ 397 SNASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALEN 443 (503)
T ss_dssp HHHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHH-CCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99997642 245566777 8999999999999988887777654433
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=7.6e-21 Score=157.30 Aligned_cols=77 Identities=31% Similarity=0.565 Sum_probs=73.0
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIPY 362 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 362 (715)
.++|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++.||..|+++|++|+.+||+..
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~ 78 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 78 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCcC
Confidence 36899999999999999999999999999999999999878899999999999999999999999999999999754
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=8.4e-21 Score=156.28 Aligned_cols=75 Identities=53% Similarity=1.111 Sum_probs=72.0
Q ss_pred CCCCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGI 360 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 360 (715)
+++|++|.||||+++|.|||+++|||+||+.||++|+..+...||.|+.++...++.||..|+++|++|+++||+
T Consensus 3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~ 77 (78)
T d1t1ha_ 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence 579999999999999999999999999999999999998788999999999999999999999999999999986
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.4e-17 Score=165.25 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=167.9
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHH-hhccCCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHH
Q 038217 402 GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRN-LLSTHNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSI 479 (715)
Q Consensus 402 ~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~L 479 (715)
.+.+.+..|+..|..++ ++.+|+..+...|++++|+. +|.+++++++..|+.+|.+++.++ ..+..+. ..|+++.|
T Consensus 29 ~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~-~~~~i~~L 106 (264)
T d1xqra1 29 ADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL-GLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCchHHH
Confidence 35677899999999999 46889999999999999885 788999999999999999999866 5577888 89999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHh
Q 038217 480 VKVLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEA 557 (715)
Q Consensus 480 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~a 557 (715)
+.+|.++.+.+++..|+++|.+|+.+.+ ++..+.. .|+++.|++++.++++..+..++.+|.||+. +++++..+++.
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 9999876588999999999999997665 5666666 8999999999999999999999999999986 57799999999
Q ss_pred CChHHHHHhhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhC
Q 038217 558 GAVTALVGALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEE 597 (715)
Q Consensus 558 G~v~~Lv~lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g 597 (715)
|+++.|+.+|. ++.+++.++.+|.+|+.. ++....+...+
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 99999999996 669999999999999874 45555555433
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.1e-18 Score=145.75 Aligned_cols=75 Identities=32% Similarity=0.488 Sum_probs=69.5
Q ss_pred CCCCCCCcCccCcccccCceeCCCc-cHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHHhcCCC
Q 038217 286 LSIPKDFCCPIMLDLMRDPVIISTG-QTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCTAHGIP 361 (715)
Q Consensus 286 ~~~~~~~~CpIc~~lm~dPv~~~cg-htfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 361 (715)
.++|++|.||||+++|.|||+++|| |+|||.||.+|+.. +.+||.|++++...++.||..|+..|++|+.++...
T Consensus 17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~~ 92 (98)
T d1wgma_ 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999765 69999999999987 778999999999999999999999999999998754
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5e-16 Score=157.97 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=165.4
Q ss_pred ccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhccCch-hHHHHhcccCcH
Q 038217 442 STHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVK-VLRFGLTTEARENAAATLFSLSAVHE-YKKKIADESGAV 519 (715)
Q Consensus 442 ~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~I~~~~g~I 519 (715)
.+.|.+.+..|+.+|.+|+.+.+|+..++ ..|++++++. +|.++ +.++|..|+.+|.+++.+++ .+..+.. .|++
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~-~~~i 103 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGAL 103 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCch
Confidence 34567889999999999999989999999 9999999986 56666 99999999999999998654 6666777 8999
Q ss_pred HHHHHHhhc-CChhHHHHHHHHHHHhhcCC-ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhC-CcchHHHHh
Q 038217 520 EALATLLRL-GTPRGKKDAVTALFNLSTHT-DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVR-QPIGAAAVG 594 (715)
Q Consensus 520 ~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~-~~e~~~~i~ 594 (715)
+.|+.++.+ .++..+..|+.+|.+|+.+. .++..++..|+++.|+.+|. +..++..++.+|.+|+. .++.+..+.
T Consensus 104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 183 (264)
T d1xqra1 104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 183 (264)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999975 45788999999999999765 47778889999999999995 67999999999999976 578888999
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHH
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASAT 634 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 634 (715)
+.|+ ++.|+.++.++++..++.|+.+|++|+...++...
T Consensus 184 ~~~~-v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~ 222 (264)
T d1xqra1 184 SMGM-VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 222 (264)
T ss_dssp HTTH-HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhhh-HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9988 99999999999999999999999999988754433
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.8e-15 Score=158.19 Aligned_cols=239 Identities=19% Similarity=0.181 Sum_probs=184.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhc-CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSI-YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYK 509 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~-~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 509 (715)
+.||.||++|+++++++|..|+.+|.||+. ++++|..|. +.|+|+.|+++|+++ +.+++..|+++|.+|+. +++++
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 469999999999999999999999999997 467899999 999999999999998 99999999999999995 56688
Q ss_pred HHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC-----------------Chh
Q 038217 510 KKIADESGAVEALATLLRL-GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG-----------------HEG 571 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~-----------------~~~ 571 (715)
..+.+ .|+++.|+.++.. .++..+..|+.+|.+|+....++..+...|+.+.+..++. +..
T Consensus 80 ~~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (457)
T d1xm9a1 80 LETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence 88888 8999999999865 5578899999999999998887777766554433333220 346
Q ss_pred HHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-------------------------------------------
Q 038217 572 VAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR------------------------------------------- 608 (715)
Q Consensus 572 ~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~------------------------------------------- 608 (715)
++..++.+|.+++.+++++..+...+++++.|+.++.
T Consensus 159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence 7777888888877776666666554444555554432
Q ss_pred -------------------------------------------------------c-CChHHHHHHHHHHHHHHhcCCH-
Q 038217 609 -------------------------------------------------------C-GTPRGKENAVAALLELCRSGGA- 631 (715)
Q Consensus 609 -------------------------------------------------------~-~s~~~ke~A~~~L~~L~~~~~~- 631 (715)
. .++..++.+..++.+++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (457)
T d1xm9a1 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence 1 2345566667777777665421
Q ss_pred --HHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 038217 632 --SATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRCE 673 (715)
Q Consensus 632 --~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~ 673 (715)
..........|+++.|+.++.++++.++..|..++..|....
T Consensus 319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~ 362 (457)
T d1xm9a1 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence 112233333889999999999999999999999998887654
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=6.8e-15 Score=121.53 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCC-ccHHHHHHHH
Q 038217 289 PKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLV-PNRALRNLIV 352 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~-pn~~l~~~i~ 352 (715)
.+++.||||++.|.+||+++|||+||+.||++|++.++..||.|+.++...++. |...+.+++.
T Consensus 21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l~ 85 (86)
T d1rmda2 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (86)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHhc
Confidence 345799999999999999999999999999999998788999999999877765 6667666553
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.6e-14 Score=123.42 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=59.4
Q ss_pred CCCCCcCccCcccccCceeCCCccHhhHHHHHHHHHhC--CCCCCCCccccccCCCCccHHHHHHHHHHH
Q 038217 288 IPKDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEG--HRTCPKTGQMLVHDRLVPNRALRNLIVQWC 355 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~--~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 355 (715)
+.+.+.||||+++|.+||+++|||+||+.||.+|+... ...||.|+.++...++.+|..++++++++.
T Consensus 18 l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~ 87 (103)
T d1jm7a_ 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (103)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999763 368999999999889999987777777664
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=5.4e-14 Score=106.82 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=47.6
Q ss_pred CcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCcc
Q 038217 292 FCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPN 344 (715)
Q Consensus 292 ~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 344 (715)
+.||||+++|.|||++ .|||+||+.||.+|+.. +.+||.||+++..++++|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence 4799999999999987 69999999999999998 6789999999999888764
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1e-13 Score=118.32 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=60.0
Q ss_pred CCCCCCcCccCcccccCceeC-CCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCccHHHHHHHHHHHH
Q 038217 287 SIPKDFCCPIMLDLMRDPVII-STGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVPNRALRNLIVQWCT 356 (715)
Q Consensus 287 ~~~~~~~CpIc~~lm~dPv~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~ 356 (715)
.+++.+.||||+++|.+||++ +|||+||+.||.+|+.. .||.|+.++...++.+|..++.+++.+..
T Consensus 18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 85 (97)
T d1jm7b_ 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (97)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence 456789999999999999986 89999999999999843 69999999999999999999999987754
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.2e-12 Score=102.37 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCC
Q 038217 291 DFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDR 340 (715)
Q Consensus 291 ~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~ 340 (715)
...||||++.+.+|++++|||+||+.||.+|+..+..+||.|++.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 35799999999999999999999999999999987889999999987654
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.1e-11 Score=92.60 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=42.9
Q ss_pred CCCcCccCcccccC-c----eeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCC
Q 038217 290 KDFCCPIMLDLMRD-P----VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRL 341 (715)
Q Consensus 290 ~~~~CpIc~~lm~d-P----v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l 341 (715)
++..||||++.+.. | ++.+|||+||..||.+|+..++..||.|++++...++
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~ 58 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence 47899999987532 2 4558999999999999998878889999998876554
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.6e-11 Score=91.34 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=43.2
Q ss_pred CCCcCccCcccccCceeCCCccHhhHHHHHHHHHhCCCCCCCCccccccCCCCc
Q 038217 290 KDFCCPIMLDLMRDPVIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVHDRLVP 343 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~~~l~p 343 (715)
+.+.||||++.+.+|++++|||+||+.||++| ..+||.|++++....-.|
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence 35799999999999999999999999999876 678999999887655443
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.88 E-value=2.6e-10 Score=89.81 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=39.8
Q ss_pred cCccCcccccCcee-CCCccHhhHHHHHHHHHhCCCCCCCCccccc
Q 038217 293 CCPIMLDLMRDPVI-ISTGQTYDRRSIARWMEEGHRTCPKTGQMLV 337 (715)
Q Consensus 293 ~CpIc~~lm~dPv~-~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~ 337 (715)
.||||++.+.+|++ ++|||+||..||.+|+.. +.+||.||+++.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~ 51 (68)
T d1chca_ 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence 59999999988875 699999999999999998 789999998764
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.5e-09 Score=80.40 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=38.9
Q ss_pred cCccCcccccCc----eeCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 293 CCPIMLDLMRDP----VIISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~dP----v~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.||||++.|.++ +..+|||+||+.||.+|+..++.+||.||+++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 599999988543 3348999999999999999877899999998764
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.72 E-value=1.8e-09 Score=80.81 Aligned_cols=48 Identities=19% Similarity=0.520 Sum_probs=40.5
Q ss_pred CCCCCcCccCcccccCc---eeC-CCccHhhHHHHHHHHHhCCCCCCCCcccc
Q 038217 288 IPKDFCCPIMLDLMRDP---VII-STGQTYDRRSIARWMEEGHRTCPKTGQML 336 (715)
Q Consensus 288 ~~~~~~CpIc~~lm~dP---v~~-~cghtfcr~cI~~w~~~~~~~CP~c~~~l 336 (715)
+.++..||||++-+.+. +.+ .|||.|+..||.+|+.. +.+||.||+++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 45677899999999753 344 69999999999999987 78999999865
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=9.6e-08 Score=82.96 Aligned_cols=49 Identities=10% Similarity=0.221 Sum_probs=39.3
Q ss_pred CCCCcCccCcccccCc------------------eeCCCccHhhHHHHHHHHHh----CCCCCCCCccccc
Q 038217 289 PKDFCCPIMLDLMRDP------------------VIISTGQTYDRRSIARWMEE----GHRTCPKTGQMLV 337 (715)
Q Consensus 289 ~~~~~CpIc~~lm~dP------------------v~~~cghtfcr~cI~~w~~~----~~~~CP~c~~~l~ 337 (715)
+.+..|+||++.|.++ .+++|||.||..||.+|+.. ++.+||.||..+.
T Consensus 23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T d1v87a_ 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence 3456899999988654 24589999999999999986 3468999997663
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.9e-05 Score=84.43 Aligned_cols=220 Identities=13% Similarity=0.069 Sum_probs=118.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh
Q 038217 392 AELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD 471 (715)
Q Consensus 392 i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~ 471 (715)
+..|+..|++.+...|..|++.|..++..=-..+ . ....+|.|..++..++ +++..++..|.++...-.+...
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~-~--~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~~~~--- 84 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER-T--RSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPEY--- 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH-H--HHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTSGGG---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh-h--HHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCChhH---
Confidence 6778999999999999999999988875311111 1 1345778888776543 5666666777666542211111
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCccH
Q 038217 472 EEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDNC 551 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n~ 551 (715)
....++.+..++... +..+|..|+.+|..+...-.... +. .-.+|.+.++..++....+..|+.++..+.......
T Consensus 85 ~~~ll~~l~~l~~~~-~~~Vr~~a~~~l~~i~~~~~~~~-~~--~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~ 160 (588)
T d1b3ua_ 85 VHCLLPPLESLATVE-ETVVRDKAVESLRAISHEHSPSD-LE--AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160 (588)
T ss_dssp GGGGHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCHHH-HH--HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH
T ss_pred HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhCCHHH-HH--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH
Confidence 123455665666555 77788888888887765432221 11 123444444444443444555555555554332211
Q ss_pred HHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 552 VRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 552 ~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
. ....++.+..+++ ++.++..++..+..++..-... .....- ++.+..++.+.++..|..|+.+|..++..
T Consensus 161 ~---~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l-~~~l~~l~~d~~~~vr~~a~~~l~~i~~~ 233 (588)
T d1b3ua_ 161 V---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI-IPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp H---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH-HHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHH-HHHHHHHhcCCchhhHHHHHHHHHHhhcc
Confidence 1 1123445555554 3456666666666665422111 111122 44445555555555555555555555543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.3e-05 Score=86.33 Aligned_cols=261 Identities=14% Similarity=0.087 Sum_probs=180.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.+...+.+.+..+|..|+..+..++..-+.. . .+.-.+|.+..+.+++....+..|+..+..+....... +.
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~--~~ 162 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VK 162 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH--HH
Confidence 5566666777888999999999999998653221 1 23345666666777766777777777777765433221 11
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCCcc
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHTDN 550 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~~n 550 (715)
...++.+..+++.. +..+|..|+.++..++..-.... .. ...++.|..++++++..++..|+.+|..++..-..
T Consensus 163 --~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~~~--~~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~ 236 (588)
T d1b3ua_ 163 --AELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDN--VK-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp --HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHH--HH-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred --HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcHHH--HH-HHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH
Confidence 23466777788777 99999999999999876433222 12 46778888888888899999999999988753322
Q ss_pred HHHHHHhCChHHHHHhhCC--hhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 551 CVRMIEAGAVTALVGALGH--EGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 551 ~~~iv~aG~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
. ....-.++.+..++.| ..++..++.+|..++..-. ..+..... ++.+..++.+.++..|..|+..|..++..
T Consensus 237 ~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l-~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T d1b3ua_ 237 E--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDL-VPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp H--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhh-hHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 1 1223467888888874 4788888888888864211 12223344 88999999999999999999999999876
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 629 GGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 629 ~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
-+......... ..+++.+..++.+.++.++..+...+..
T Consensus 312 l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~~~~~l~~ 350 (588)
T d1b3ua_ 312 LSADCRENVIM-SQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp SCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred HhhhhhhhhhH-HHHHHHHHHhhcCCChHHHHHHHHHHhh
Confidence 54333333333 3568888888888888888777654443
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.26 E-value=2.7e-07 Score=70.11 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCCcCccCcccccCceeCCC-----ccHhhHHHHHHHHHh-CCCCCCCCccccc
Q 038217 290 KDFCCPIMLDLMRDPVIIST-----GQTYDRRSIARWMEE-GHRTCPKTGQMLV 337 (715)
Q Consensus 290 ~~~~CpIc~~lm~dPv~~~c-----ghtfcr~cI~~w~~~-~~~~CP~c~~~l~ 337 (715)
+...|+||++.+.++.+.+| +|.|++.||.+|+.. ++.+||.|++++.
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 46789999999998877755 499999999999975 6789999998764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=0.00015 Score=70.81 Aligned_cols=228 Identities=13% Similarity=0.096 Sum_probs=137.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRI 469 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I 469 (715)
.....|++.|++.++.++..|+..|..+.. ..+++.|+.+|.++++.++..|+.+|..+.........+
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~ 87 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV 87 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence 356788999999999999999999876542 235899999999999999999999999886544432222
Q ss_pred hhhcCcHHHHHHH-HhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcCC
Q 038217 470 MDEEGCLGSIVKV-LRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTHT 548 (715)
Q Consensus 470 ~~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~~ 548 (715)
++.+... ++.. +..++..|+.+|..+........ ...++.+...+.+.++.++..|+.++.....
T Consensus 88 ------~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-- 153 (276)
T d1oyza_ 88 ------FNILNNMALNDK-SACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-- 153 (276)
T ss_dssp ------HHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred ------HHHHHHHHhcCC-ChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence 3344444 4454 89999999999988765332211 2356677777776667777777666554321
Q ss_pred ccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCc--------------c--hHH-------HHhhhCCcHHHH
Q 038217 549 DNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQP--------------I--GAA-------AVGEEEMAVTGL 603 (715)
Q Consensus 549 ~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~--------------e--~~~-------~i~~~g~~I~~L 603 (715)
...++.+..++. +......+..++..+.... . .+. .+..... ++.|
T Consensus 154 --------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-~~~L 224 (276)
T d1oyza_ 154 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV-LSVL 224 (276)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGG-HHHH
T ss_pred --------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhh-HHHH
Confidence 123333444432 1222222222222221110 0 000 0011233 6777
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 038217 604 VGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTG-TKRARRKAASLA 666 (715)
Q Consensus 604 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~-~~~~k~~A~~lL 666 (715)
+..+.+ +..+..|+.+|..+.. .+.++.|..++.+. +..++..|...|
T Consensus 225 ~~~l~d--~~vr~~a~~aL~~ig~-------------~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 225 CDELKK--NTVYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHHTS--SSCCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHhCC--hHHHHHHHHHHHHcCC-------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 777653 3466677777765421 23577787777654 667777776554
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5e-07 Score=74.36 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=36.3
Q ss_pred cCccCcccccC-----------------ce-eCCCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 293 CCPIMLDLMRD-----------------PV-IISTGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 293 ~CpIc~~lm~d-----------------Pv-~~~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.|+||++-|.+ ++ .++|||.|+..||.+|+.. +.+||.||++...
T Consensus 23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 85 (88)
T d3dplr1 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 85 (88)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCcccc
Confidence 48888776655 23 3489999999999999998 7899999987643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.00079 Score=65.37 Aligned_cols=200 Identities=11% Similarity=0.060 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHH-HhhccCCHHHHHHHHHHHhhhhcCchhhh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLR-NLLSTHNPVAQENSVTAMLNLSIYDKNKS 467 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~~~~A~~aL~nLs~~~~nk~ 467 (715)
...++.|+..|++.++.++..|+..|..+.... ..... .++.|. .+|++.++.++..|+.+|.++......
T Consensus 49 ~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~-~~~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-- 120 (276)
T d1oyza_ 49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-- 120 (276)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch--
Confidence 457889999999999999999999988775332 11111 233444 356788999999999999888654321
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhcC
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLSTH 547 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~~ 547 (715)
. ....++.+...+... +..++..|+.++.... . ...++.+..++...+......+..++.+....
T Consensus 121 --~-~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~----------~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 185 (276)
T d1oyza_ 121 --Y-SPKIVEQSQITAFDK-STNVRRATAFAISVIN----------D-KATIPLLINLLKDPNGDVRNWAAFAININKYD 185 (276)
T ss_dssp --G-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred --h-hHHHHHHHHHHhcCc-chHHHHHHHHHHhhcc----------h-HHHHHHHHHhcccccchhhhhHHHHHHhhhcc
Confidence 1 233456666666665 6677766666554432 1 34445555555444444433333333332211
Q ss_pred Ccc----------------HHHH-------HHhCChHHHHHhhCChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHH
Q 038217 548 TDN----------------CVRM-------IEAGAVTALVGALGHEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLV 604 (715)
Q Consensus 548 ~~n----------------~~~i-------v~aG~v~~Lv~lL~~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv 604 (715)
... +... -...+++.|+..+.|+.++..++.+|..+. ..+. ++.|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d~~vr~~a~~aL~~ig----------~~~~-~~~L~ 254 (276)
T d1oyza_ 186 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELG----------DKTL-LPVLD 254 (276)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSCCHHHHHHHHHHC----------CGGG-HHHHH
T ss_pred ccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCChHHHHHHHHHHHHcC----------CHHH-HHHHH
Confidence 110 0000 012467888888887777788888887764 2234 89999
Q ss_pred HHhhc-CChHHHHHHHHHH
Q 038217 605 GMMRC-GTPRGKENAVAAL 622 (715)
Q Consensus 605 ~lL~~-~s~~~ke~A~~~L 622 (715)
.++.. ++..++..|+..|
T Consensus 255 ~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 255 TMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHTTSSCCHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHH
Confidence 88876 4678888888776
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0017 Score=67.37 Aligned_cols=274 Identities=11% Similarity=0.016 Sum_probs=169.0
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchh-
Q 038217 391 TAELLIQQLAN--GSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKN- 465 (715)
Q Consensus 391 ~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~n- 465 (715)
.++.++..+.+ .++..+..++..+..++.........-.-...++.++..+.+ .+..++..|+.++.++......
T Consensus 128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~ 207 (458)
T d1ibrb_ 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 207 (458)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence 56777787765 456666677777777764432221111112346777777765 4578999999999988765432
Q ss_pred -hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 466 -KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 466 -k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
..... .....+.+...+..+ +.+.+..++.+|..+..... ....+ . ....+.+...+.+.++..+..|+..+.
T Consensus 208 ~~~~~~-~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~a~~~l~ 283 (458)
T d1ibrb_ 208 FDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFWS 283 (458)
T ss_dssp HTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hhhHHH-HHHhHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11222 234566667777776 89999999999988864322 11111 1 223344455566677888888888888
Q ss_pred HhhcCCc---------------------cHHHHHHhCChHHHHHhhC-------C--hhHHHHHHHHHHHHhCCcchHHH
Q 038217 543 NLSTHTD---------------------NCVRMIEAGAVTALVGALG-------H--EGVAEEAAGALALIVRQPIGAAA 592 (715)
Q Consensus 543 nLs~~~~---------------------n~~~iv~aG~v~~Lv~lL~-------~--~~~~~~al~~L~~La~~~e~~~~ 592 (715)
.++.... ......-...++.+...+. + ..+...+..++..++..... .
T Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~ 361 (458)
T d1ibrb_ 284 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 361 (458)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T
T ss_pred HHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--h
Confidence 7753210 0111111123444555542 1 14666677777776542211 1
Q ss_pred HhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 593 VGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 593 i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
+.. ..++.+.+.+.+.+...|+.|+.+|..++.+.......... ..+++.|+..+++..+++|..|...+.-+.++
T Consensus 362 ~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 362 IVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 111 12566777888888999999999999988654222221221 45799999999999999999999988777765
Q ss_pred hh
Q 038217 673 EN 674 (715)
Q Consensus 673 ~~ 674 (715)
..
T Consensus 438 ~~ 439 (458)
T d1ibrb_ 438 LP 439 (458)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00094 Score=77.07 Aligned_cols=273 Identities=12% Similarity=0.046 Sum_probs=159.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc--hhhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD--KNKS 467 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~--~nk~ 467 (715)
..++.+...+.+.++..|..|+..+..++....+.-.... ...+|.|+..|++.++.++..|+++|..++..- ....
T Consensus 395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~ 473 (888)
T d1qbkb_ 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 473 (888)
T ss_dssp HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3556666777889999999999999988864332211111 235778888899999999999999999887532 2222
Q ss_pred hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhh
Q 038217 468 RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLS 545 (715)
Q Consensus 468 ~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs 545 (715)
... ...++.++..+.+. +..++..|+.+|.++..... ....+ ...++.|+..+..........+..++..++
T Consensus 474 ~~~--~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~~~l~p~~---~~il~~l~~~l~~~~~~~~~~~~~al~~l~ 547 (888)
T d1qbkb_ 474 TYL--KPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKYQHKNLLILYDAIGTLA 547 (888)
T ss_dssp HHT--TTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHTTSSGGGH---HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hhh--hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333 56888899888887 88999999999998864221 11111 223445555555444443333333333332
Q ss_pred c---CCccHHHHHHh-----------------------CChHHHHHhhC-------------------------------
Q 038217 546 T---HTDNCVRMIEA-----------------------GAVTALVGALG------------------------------- 568 (715)
Q Consensus 546 ~---~~~n~~~iv~a-----------------------G~v~~Lv~lL~------------------------------- 568 (715)
. ..-++..+.+. .++..++..++
T Consensus 548 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 627 (888)
T d1qbkb_ 548 DSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 627 (888)
T ss_dssp HHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 00011110000 00000111110
Q ss_pred -------ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 038217 569 -------HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKA 640 (715)
Q Consensus 569 -------~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 640 (715)
+.+....++.++..++.. ...-..++.....++.+...+.+.++..++.|..++..++...+......+-
T Consensus 628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-- 705 (888)
T d1qbkb_ 628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-- 705 (888)
T ss_dssp TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH--
Confidence 123333444444444321 2222233333333666777888888999999999999998776543322221
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 641 PALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 641 ~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.+++.|..-+.+....++..|.+.+..+...
T Consensus 706 -~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 706 -DFMPILGTNLNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp -HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 2567777777777888888888877766543
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.0078 Score=63.02 Aligned_cols=272 Identities=11% Similarity=0.108 Sum_probs=175.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc-CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhh-
Q 038217 394 LLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA-GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMD- 471 (715)
Q Consensus 394 ~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~- 471 (715)
.+...|.+++.-....+...+..++..+..+....-.. .....+-.+..+.+...+.-|+..|..|...+..|..+..
T Consensus 126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~ 205 (477)
T d1ho8a_ 126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLH 205 (477)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHc
Confidence 44455666666667777777777775544433321111 2233333444668889999999999999999988888752
Q ss_pred hcCcHHHHHHHHhc----------------CCCHHHHHHHHHHHHHhccCchhHHHHhcc-cCcHHHHHHHhhcCC-hhH
Q 038217 472 EEGCLGSIVKVLRF----------------GLTTEARENAAATLFSLSAVHEYKKKIADE-SGAVEALATLLRLGT-PRG 533 (715)
Q Consensus 472 ~~g~i~~Lv~lL~~----------------~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~-~g~I~~Lv~LL~~~~-~~~ 533 (715)
+...+++++++|+. +.......+++-+++-||-..+....+... .+.|+.|+++++... +.+
T Consensus 206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKv 285 (477)
T d1ho8a_ 206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKV 285 (477)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 34567777777754 112467889999999999988877777652 256999999997644 688
Q ss_pred HHHHHHHHHHhhcCCc--c----HHHHHHhCChHHHHHhh-C----ChhHHHHHHHHHHH-------HhCC---------
Q 038217 534 KKDAVTALFNLSTHTD--N----CVRMIEAGAVTALVGAL-G----HEGVAEEAAGALAL-------IVRQ--------- 586 (715)
Q Consensus 534 ~~~A~~aL~nLs~~~~--n----~~~iv~aG~v~~Lv~lL-~----~~~~~~~al~~L~~-------La~~--------- 586 (715)
..-++.+|.||+.... + ...|+..++.+. +..| . |+++.+..-.+-.. +++.
T Consensus 286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S 364 (477)
T d1ho8a_ 286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS 364 (477)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 8899999999987533 2 333556665555 4555 2 66554332222111 2211
Q ss_pred ------cchH-HHHhhh---------CCcHHHHHHHhhc----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 038217 587 ------PIGA-AAVGEE---------EMAVTGLVGMMRC----------GTPRGKENAVAALLELCRSGGASATERVLKA 640 (715)
Q Consensus 587 ------~e~~-~~i~~~---------g~~I~~Lv~lL~~----------~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 640 (715)
|-.+ +.+... ...+..|+++|.+ .++.+...|+.=+..+|++-|. .+..+.+
T Consensus 365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-gr~il~~- 442 (477)
T d1ho8a_ 365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-SIDVLDK- 442 (477)
T ss_dssp TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH-
T ss_pred CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-hhHHHHH-
Confidence 2222 223221 1247888898862 2344555566668889988753 4445554
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 038217 641 PALVGLLQALLFTGTKRARRKAASLARV 668 (715)
Q Consensus 641 ~g~i~~L~~Ll~s~~~~~k~~A~~lL~~ 668 (715)
.|+=..+++|+.+.++.++..|...++-
T Consensus 443 lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 470 (477)
T d1ho8a_ 443 TGGKADIMELLNHSDSRVKYEALKATQA 470 (477)
T ss_dssp HSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998765543
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00019 Score=85.67 Aligned_cols=268 Identities=11% Similarity=0.102 Sum_probs=170.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.+..|++++.+.|++.|..|+..|.+....+...-..-.....++.|+++|.+.++++|..|+.+|..+...-.+ ..+
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~--~~~ 81 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV 81 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH--hhH
Confidence 577888999999999999999998887643211100001224678999999999999999999999998754332 222
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc----C---chhHHHHhcccCcHHHHHHHhhc-CChhHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA----V---HEYKKKIADESGAVEALATLLRL-GTPRGKKDAVTALF 542 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~---~~~~~~I~~~~g~I~~Lv~LL~~-~~~~~~~~A~~aL~ 542 (715)
...++.|+..+.++ +.+.+..+..+|..+.. . ......+. ...++.|...+.. .+...+..|+.+|.
T Consensus 82 --~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~~al~~l~ 156 (1207)
T d1u6gc_ 82 --ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMA 156 (1207)
T ss_dssp --HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 34567777777666 67778777777665532 1 11111111 1234444444433 34677888998888
Q ss_pred HhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchHHHHhhhCCcHHHHHHHhh-cCChHHHHHHH
Q 038217 543 NLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGAAAVGEEEMAVTGLVGMMR-CGTPRGKENAV 619 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~~~i~~~g~~I~~Lv~lL~-~~s~~~ke~A~ 619 (715)
.+....+.--.-....+++.++..+. +..++..|+.+|..|+..-.. ... ... ++.++..+. +.+...+..++
T Consensus 157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~-~~~-~~~ll~~l~~~~~~~~~~~~~ 232 (1207)
T d1u6gc_ 157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDL-IEHLLSELSKNDSMSTTRTYI 232 (1207)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTH-HHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH-HHH-HHHHHHHHccCCCHHHHHHHH
Confidence 88653221000001124556666665 458899999999999763211 111 122 677776554 34556677788
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 620 AALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 620 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
.++..++...+...... -..+++.+...+.+.++..+..|...+..+...
T Consensus 233 ~~l~~l~~~~~~~~~~~---l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 233 QCIAAISRQAGHRIGEY---LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHHHHHHSSGGGTTS---CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcchhhHHH---HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 88888888765432211 145799999999999999999888777776543
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.44 E-value=0.0036 Score=65.62 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=154.4
Q ss_pred HHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhcc-----------------CCHHHHHHHHHHH
Q 038217 397 QQL-ANGSPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLST-----------------HNPVAQENSVTAM 456 (715)
Q Consensus 397 ~~L-~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s-----------------~d~~~~~~A~~aL 456 (715)
+.| .+++.+.+.-|+..+..+... +..|..+.. ...+++|+..|.. .+..++.+++-++
T Consensus 171 ~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~l 249 (477)
T d1ho8a_ 171 NILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLI 249 (477)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHH
T ss_pred HHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHH
Confidence 444 577888888889999988864 789988864 4567888887753 1257899999999
Q ss_pred hhhhcCchhhhhhhhhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--h----HHHHhcccCcHHHHHHHhhc
Q 038217 457 LNLSIYDKNKSRIMDEE--GCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--Y----KKKIADESGAVEALATLLRL 528 (715)
Q Consensus 457 ~nLs~~~~nk~~I~~~~--g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~----~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+-|+.+.+....+. .. +.|+.++.+++......+...+.++|.||..... + ...+.. .+++ .++..|..
T Consensus 250 WlLSF~~~~~~~l~-~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~-~~~l-~~l~~L~~ 326 (477)
T d1ho8a_ 250 WLLTFNPVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNAL-PTVQSLSE 326 (477)
T ss_dssp HHHTTSHHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCHH-HHHHHHHS
T ss_pred HHHHcCHHHHHHHH-HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-cchh-HHHHHHhc
Confidence 99999888777777 44 4599999999876578888999999999976432 2 222333 4455 45555554
Q ss_pred C---ChhHHHHHHHHH--------HHhhcCCc------------------------cHHHHHHh--CChHHHHHhhC---
Q 038217 529 G---TPRGKKDAVTAL--------FNLSTHTD------------------------NCVRMIEA--GAVTALVGALG--- 568 (715)
Q Consensus 529 ~---~~~~~~~A~~aL--------~nLs~~~~------------------------n~~~iv~a--G~v~~Lv~lL~--- 568 (715)
. +++...+ +..| ..|++.++ |..++-+. ..+..|+.+|+
T Consensus 327 r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~ 405 (477)
T d1ho8a_ 327 RKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 405 (477)
T ss_dssp SCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcc
Confidence 2 3443322 2222 11221111 22222111 24777888883
Q ss_pred ---------ChhHHHHHHHHHHHHhC-CcchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 038217 569 ---------HEGVAEEAAGALALIVR-QPIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRS 628 (715)
Q Consensus 569 ---------~~~~~~~al~~L~~La~-~~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 628 (715)
|+.+..-|+.=+..++. .|+||..+-+.|+ =..++++|.+.++++|.+|+.++-.+-.+
T Consensus 406 ~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~-K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 406 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG-KADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH-HHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 33455556677778877 6999999988887 67778899999999999999988766543
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=2.3e-05 Score=64.82 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCcCccCccccc--C-ceeCCCccHhhHHHHHHHHHh----CC---CCCCCCc
Q 038217 291 DFCCPIMLDLMR--D-PVIISTGQTYDRRSIARWMEE----GH---RTCPKTG 333 (715)
Q Consensus 291 ~~~CpIc~~lm~--d-Pv~~~cghtfcr~cI~~w~~~----~~---~~CP~c~ 333 (715)
.-.||||++.+. + ++..+|||.||+.|+..|+.. |. ..||.|+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~ 57 (94)
T d1wima_ 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence 347999998874 3 445589999999999999974 22 2699864
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0031 Score=72.47 Aligned_cols=274 Identities=13% Similarity=0.006 Sum_probs=150.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-hhh
Q 038217 390 ATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-KSR 468 (715)
Q Consensus 390 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k~~ 468 (715)
..++.|+..+++.++.+|..|++.|..++.........-.-...++.++..+.+.++.+++.|+.+|.++...... -..
T Consensus 436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p 515 (888)
T d1qbkb_ 436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 515 (888)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG
T ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4678888999999999999999999887743211111111235788888888889999999999999998753321 111
Q ss_pred hhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc---CchhHHHHhc---------------c---------------
Q 038217 469 IMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA---VHEYKKKIAD---------------E--------------- 515 (715)
Q Consensus 469 I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~---~~~~~~~I~~---------------~--------------- 515 (715)
.. ...++.++..+... ....+..+..++..++. ..-.+..+.. .
T Consensus 516 ~~--~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~ 592 (888)
T d1qbkb_ 516 YL--AYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 592 (888)
T ss_dssp GH--HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 11 34555666666554 44444444444433321 0000000000 0
Q ss_pred ----cCc-------HHHHHHHhh-----------------cCChhHHHHHHHHHHHhhc--CCccHHHHHHhCChHHHHH
Q 038217 516 ----SGA-------VEALATLLR-----------------LGTPRGKKDAVTALFNLST--HTDNCVRMIEAGAVTALVG 565 (715)
Q Consensus 516 ----~g~-------I~~Lv~LL~-----------------~~~~~~~~~A~~aL~nLs~--~~~n~~~iv~aG~v~~Lv~ 565 (715)
.+. ++.+++++. ..+.+....++.++..+.. .......+.....++.+..
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~ 672 (888)
T d1qbkb_ 593 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 672 (888)
T ss_dssp HHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHH
T ss_pred HHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHH
Confidence 000 001111110 0012223333334444332 1111111222334555666
Q ss_pred hhC--ChhHHHHHHHHHHHHhCC-cchHHHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038217 566 ALG--HEGVAEEAAGALALIVRQ-PIGAAAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPA 642 (715)
Q Consensus 566 lL~--~~~~~~~al~~L~~La~~-~e~~~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g 642 (715)
.++ ++.++..|..++..|+.. ...-.... +..++.+..-+.+.....+.+|++++..++...++.....+ ..
T Consensus 673 ~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~---~~ 747 (888)
T d1qbkb_ 673 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI---PM 747 (888)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS---HH
T ss_pred HhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH---HH
Confidence 665 458888898888888753 22211111 11256666667667778899999999999987654322111 24
Q ss_pred cHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Q 038217 643 LVGLLQALLFTG--TKRARRKAASLARVFQR 671 (715)
Q Consensus 643 ~i~~L~~Ll~s~--~~~~k~~A~~lL~~l~~ 671 (715)
+++.|+.++++. ...+++.+...+.-|..
T Consensus 748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~ 778 (888)
T d1qbkb_ 748 VLHQLVEIINRPNTPKTLLENTAITIGRLGY 778 (888)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 688899999875 34567777766654443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.19 E-value=0.00056 Score=57.61 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=74.5
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKK 511 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 511 (715)
.+++.|+..|.++++.++..|+.+|.++. ..++++.|+..|+.. +..+|..|+.+|..+
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i--------- 80 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDD-SGFVRSGAARSLEQI--------- 80 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHHhhhccc-hhHHHHHHHHHHHHh---------
Confidence 46889999999999999999999997653 345788999999987 999999999999765
Q ss_pred HhcccCcHHHHHHHhhcCChhHHHHHHHHH
Q 038217 512 IADESGAVEALATLLRLGTPRGKKDAVTAL 541 (715)
Q Consensus 512 I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL 541 (715)
+. .++++.|..+++++++.++..|+.+|
T Consensus 81 -~~-~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 81 -GG-ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp -CS-HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -Cc-cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33 67889999999999999999998876
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.011 Score=66.31 Aligned_cols=265 Identities=9% Similarity=0.013 Sum_probs=163.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCchh--hh-
Q 038217 393 ELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDKN--KS- 467 (715)
Q Consensus 393 ~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~n--k~- 467 (715)
..|-..+.|.+.+.|.+|-..|..+..+++ .+++..|...+.+ .+..++..|+..|.|.-..... ..
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence 344444678899999999999988876542 2467788888865 4578888888888887543211 10
Q ss_pred -------hhh--hhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCC-hhHHHHH
Q 038217 468 -------RIM--DEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGT-PRGKKDA 537 (715)
Q Consensus 468 -------~I~--~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~-~~~~~~A 537 (715)
.+- .....-..++..|.+. +..+|..++.++..++..+-.. +.++..++.|+..+.+.+ ...+..|
T Consensus 80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~---~~wpeli~~L~~~~~s~~~~~~~~~a 155 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred HHhhhHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCc---CchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 000 0122335566677776 8889998888888886432111 123567888888887655 4566778
Q ss_pred HHHHHHhhcCCccHHHHHHh---CChHHHHHhhC----ChhHHHHHHHHHHHHhCCcc-hHH-HHhhhCCcHHHHHHHhh
Q 038217 538 VTALFNLSTHTDNCVRMIEA---GAVTALVGALG----HEGVAEEAAGALALIVRQPI-GAA-AVGEEEMAVTGLVGMMR 608 (715)
Q Consensus 538 ~~aL~nLs~~~~n~~~iv~a---G~v~~Lv~lL~----~~~~~~~al~~L~~La~~~e-~~~-~i~~~g~~I~~Lv~lL~ 608 (715)
+.+|..++..-+....-.-. ..+..++..+. +..++..++.+|.++...-. .-. ....... ++.+...+.
T Consensus 156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 234 (861)
T d2bpta1 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL-MQVVCEATQ 234 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHH-HHhHHHHhc
Confidence 88888887543321111111 12333333332 35788889999988765322 111 1112223 677778888
Q ss_pred cCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 609 CGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 609 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
..+++.+..|..+|..++...++.....+.. . +...+.....+..+..+..|..++..+.+.
T Consensus 235 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~-l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~ 296 (861)
T d2bpta1 235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-A-LYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-T-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 8899999999999999987654433333322 1 223334455566888888887777666543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.021 Score=58.52 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=143.5
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChhhHH-HHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchh-h
Q 038217 391 TAELLIQQLAN--GSPRAKTVAAREIRLLAKTGKENRA-FIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKN-K 466 (715)
Q Consensus 391 ~i~~Lv~~L~s--~~~~~~~~A~~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~n-k 466 (715)
.++.++..+.+ .+.+.+..|+..+..+.......-. ........+.+..++.+.+++++..++.+|..+...... -
T Consensus 172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 251 (458)
T d1ibrb_ 172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 251 (458)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 56777777764 3578899999999888754433221 112223456677788889999999999999998654322 1
Q ss_pred hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHH--------------------hcccCcHHHHHHHh
Q 038217 467 SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKI--------------------ADESGAVEALATLL 526 (715)
Q Consensus 467 ~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I--------------------~~~~g~I~~Lv~LL 526 (715)
...+ .....+.+...+.+. +.+.+..|...+..++......... ......++.+...+
T Consensus 252 ~~~l-~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 252 ETYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp TTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 1122 233334445555665 8888888888888775422111000 00012344455544
Q ss_pred hc-------CChhHHHHHHHHHHHhhcCCccHHHHHHhCChHHHHHhhC--ChhHHHHHHHHHHHHhCCcchH--HHHhh
Q 038217 527 RL-------GTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALG--HEGVAEEAAGALALIVRQPIGA--AAVGE 595 (715)
Q Consensus 527 ~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~v~~Lv~lL~--~~~~~~~al~~L~~La~~~e~~--~~i~~ 595 (715)
.. ++...+..|..++..++...... +. ...++.+...++ +...+..|+.+|..++...... ...
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-- 404 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-- 404 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT--
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH--
Confidence 32 12346777888887777533221 11 124555666665 4478888999999988643221 111
Q ss_pred hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC
Q 038217 596 EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG 629 (715)
Q Consensus 596 ~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 629 (715)
....++.|+..+.+.++.+|..|+.+|..++..-
T Consensus 405 l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~ 438 (458)
T d1ibrb_ 405 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 438 (458)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 1233899999999999999999999999988654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0033 Score=74.48 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcC----ch
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIY----DK 464 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~----~~ 464 (715)
+..++.|+..|...++++|..|+..|..+...-++.. + ...++.|+..+.+++...+..+..+|..+... ..
T Consensus 44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~ 119 (1207)
T d1u6gc_ 44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119 (1207)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence 3478889999999999999999999999987654332 1 24577788877778888888888777665321 11
Q ss_pred hh--hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 465 NK--SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 465 nk--~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
+. .... ....++.+...+.+..+...+..|..+|..+......-..- .....++.|+..+.+.+..+++.|+.+|.
T Consensus 120 ~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~ 197 (1207)
T d1u6gc_ 120 GSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALG 197 (1207)
T ss_dssp -CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11 1111 13344555555555547788888888888775422110000 01235667777788888889999999999
Q ss_pred HhhcCCccHHHHHHhCChHHHHHhhC---ChhHHHHHHHHHHHHhCCcchHHHHhh-hCCcHHHHHHHhhcCChHHHHHH
Q 038217 543 NLSTHTDNCVRMIEAGAVTALVGALG---HEGVAEEAAGALALIVRQPIGAAAVGE-EEMAVTGLVGMMRCGTPRGKENA 618 (715)
Q Consensus 543 nLs~~~~n~~~iv~aG~v~~Lv~lL~---~~~~~~~al~~L~~La~~~e~~~~i~~-~g~~I~~Lv~lL~~~s~~~ke~A 618 (715)
.|+..-... .-...++.++..+. +...+..++.++..++.....+ +.. ....++.+...+...++..++.|
T Consensus 198 ~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~~r~~a 272 (1207)
T d1u6gc_ 198 HLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDELREYC 272 (1207)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred HHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 998643321 01134566666663 2233444555555555421111 111 23347888889988899999999
Q ss_pred HHHHHHHHhcCC
Q 038217 619 VAALLELCRSGG 630 (715)
Q Consensus 619 ~~~L~~L~~~~~ 630 (715)
+.++..++...+
T Consensus 273 l~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 273 IQAFESFVRRCP 284 (1207)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHhCh
Confidence 999988887654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.12 Score=57.52 Aligned_cols=270 Identities=11% Similarity=0.032 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCch
Q 038217 391 TAELLIQQLANG--SPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLST--HNPVAQENSVTAMLNLSIYDK 464 (715)
Q Consensus 391 ~i~~Lv~~L~s~--~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~~ 464 (715)
.++.|+..+.++ +...+..++..|..++++-.. ..+.. ...++.++..+.+ .+.+++..|+.++.+......
T Consensus 129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 678888888654 466677788888888754221 12221 2457788887765 357889999999887754432
Q ss_pred hh--hhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-h-hHHHHhcccCcHHHHHHHhhcCChhHHHHHHHH
Q 038217 465 NK--SRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH-E-YKKKIADESGAVEALATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 465 nk--~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~-~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~a 540 (715)
.. .... ..-.++.+...++.+ +.+.+..+..+|..+...- + ....+ . ....+.+...+....+.....++..
T Consensus 207 ~~~~~~~~-~~~i~~~l~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (876)
T d1qgra_ 207 ANFDKESE-RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp HHHTSHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hhhhHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccccHHHHHHHHHH
Confidence 21 1111 223455666666776 8899999999998886532 2 22222 2 2345555666666777888888777
Q ss_pred HHHhhcCCc---------------------cHHHHHHhCChHHHHHhhC-------C--hhHHHHHHHHHHHHhCCcchH
Q 038217 541 LFNLSTHTD---------------------NCVRMIEAGAVTALVGALG-------H--EGVAEEAAGALALIVRQPIGA 590 (715)
Q Consensus 541 L~nLs~~~~---------------------n~~~iv~aG~v~~Lv~lL~-------~--~~~~~~al~~L~~La~~~e~~ 590 (715)
+..++.... +-........++.+...+. + ..+...+..+|..++.....
T Consensus 283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~- 361 (876)
T d1qgra_ 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh-
Confidence 766653211 1111111123444444442 1 13566666666666532111
Q ss_pred HHHhhhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 038217 591 AAVGEEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQ 670 (715)
Q Consensus 591 ~~i~~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~ 670 (715)
.+. +..++.+.+.+.+.+...++.++.++..+.............. .+++.+...+.+.++.++..|...+..+.
T Consensus 362 -~~~--~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T d1qgra_ 362 -DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp -GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -hhh--hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHHhhcCCccHHHHHHHHHHHHHH
Confidence 111 1113445556666788889999888888776544433333332 35888999999999999999988877766
Q ss_pred Hh
Q 038217 671 RC 672 (715)
Q Consensus 671 ~~ 672 (715)
+.
T Consensus 437 ~~ 438 (876)
T d1qgra_ 437 EL 438 (876)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.47 E-value=0.0015 Score=54.86 Aligned_cols=87 Identities=23% Similarity=0.217 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCchhhhhhh
Q 038217 391 TAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYDKNKSRIM 470 (715)
Q Consensus 391 ~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~~nk~~I~ 470 (715)
.++.|+..|.+.++.++..|+..|..+. ..++++.|+.+|.++++.++..|+.+|..+.
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------- 81 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 81 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence 4678889999999999999999876543 1235899999999999999999999997652
Q ss_pred hhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038217 471 DEEGCLGSIVKVLRFGLTTEARENAAATLF 500 (715)
Q Consensus 471 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 500 (715)
..++++.|..+++.+ +..+|..|+.+|.
T Consensus 82 -~~~~~~~L~~ll~d~-~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 -GERVRAAMEKLAETG-TGFARKVAVNYLE 109 (111)
T ss_dssp -SHHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred -ccchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 456788888899887 8899998888763
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.29 Score=53.92 Aligned_cols=271 Identities=10% Similarity=0.065 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHH--cCChHHHHHhhc--cCCHHHHHHHHHHHhhhhcCchh
Q 038217 391 TAELLIQQLANG-SPRAKTVAAREIRLLAKTGKENRAFIAK--AGAIPHLRNLLS--THNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 391 ~i~~Lv~~L~s~-~~~~~~~A~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~--s~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.++.|+..+.+. +...+..|+..+..++......-..+.. ...++.++..+. ..+..++..|+.++.++...-..
T Consensus 135 li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 214 (861)
T d2bpta1 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhH
Confidence 678888888765 4556777888888887543221111111 012333344333 35688999999999988654322
Q ss_pred --hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCch--hHHHHhcccCcHHHH-HHHhhcCChhHHHHHHHH
Q 038217 466 --KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHE--YKKKIADESGAVEAL-ATLLRLGTPRGKKDAVTA 540 (715)
Q Consensus 466 --k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~I~~~~g~I~~L-v~LL~~~~~~~~~~A~~a 540 (715)
..... ....++.+...++.+ +.+.+..+..+|..+..... ....+. ..+..+ ....++.++..+..++..
T Consensus 215 ~~~~~~~-~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~---~~l~~l~~~~~~~~~~~v~~~~~~~ 289 (861)
T d2bpta1 215 NMEREGE-RNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME---QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp HHTSHHH-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH---HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHhhhh-hhHHHHhHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCccHHHHHHHHHH
Confidence 11112 244677778888887 89999999999988865322 111221 123333 334455667888888888
Q ss_pred HHHhhcCCccHHH-HH----------------HhCChHHHHHhhC----C-----hhHHHHHHHHHHHHhCCcchHHHHh
Q 038217 541 LFNLSTHTDNCVR-MI----------------EAGAVTALVGALG----H-----EGVAEEAAGALALIVRQPIGAAAVG 594 (715)
Q Consensus 541 L~nLs~~~~n~~~-iv----------------~aG~v~~Lv~lL~----~-----~~~~~~al~~L~~La~~~e~~~~i~ 594 (715)
+..++........ .. -...++.+...+. + ......+..+|..++...... +.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 367 (861)
T d2bpta1 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--IL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--hh
Confidence 8777543211110 00 1123455555553 1 134555555555554321110 11
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 038217 595 EEEMAVTGLVGMMRCGTPRGKENAVAALLELCRSGGASATERVLKAPALVGLLQALLFTGTKRARRKAASLARVFQRC 672 (715)
Q Consensus 595 ~~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~ 672 (715)
. ...+.+...+.+.+...++.|+.++..+.............. .+++.+...+.+..+.++..|...+..+...
T Consensus 368 ~--~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 368 E--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp H--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred h--hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 0 002333345566778889999999988887665444333333 3588899999999999999998888776654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.087 Score=58.73 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=135.3
Q ss_pred ChHHHHHhhcc--CCHHHHHHHHHHHhhhhcCc-hhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCchhH
Q 038217 433 AIPHLRNLLST--HNPVAQENSVTAMLNLSIYD-KNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVHEYK 509 (715)
Q Consensus 433 ~i~~Lv~lL~s--~d~~~~~~A~~aL~nLs~~~-~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 509 (715)
.++.+..++.. ++..+++.++.++..++..- ++-.... ...++.++..|++..+.+++..|..++..++......
T Consensus 607 i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l--~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 684 (876)
T d1qgra_ 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN 684 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHh
Confidence 45556666654 46678889999988886433 2222222 3567888888887656789999999988776533222
Q ss_pred HHHhcccCcHHHHHHHhhcCC--hhHHHHHHHHHHHhhcCCc-cHHHHHHhCChHHHHHhh----C---C---hh-----
Q 038217 510 KKIADESGAVEALATLLRLGT--PRGKKDAVTALFNLSTHTD-NCVRMIEAGAVTALVGAL----G---H---EG----- 571 (715)
Q Consensus 510 ~~I~~~~g~I~~Lv~LL~~~~--~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~v~~Lv~lL----~---~---~~----- 571 (715)
..... ...++.|++.+.+.+ ...+..++.++..++..-. .- ..+++.++..| + + .+
T Consensus 685 ~~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~-----~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~ 758 (876)
T d1qgra_ 685 IIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEF-----KKYLEVVLNTLQQASQAQVDKSDYDMVDYL 758 (876)
T ss_dssp GHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGG-----GGGHHHHHHHHHHHHTCCCCTTCHHHHHHH
T ss_pred hhhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhh-----HHHHHHHHHHHHHHHhcccCccchhHHHHH
Confidence 11111 357778888887643 5678888888887764311 11 11233333333 2 1 11
Q ss_pred --HHHHHHHHHH----HHhCCcc-hHHHHhhhCCcHHHHHHHhh------cCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 038217 572 --VAEEAAGALA----LIVRQPI-GAAAVGEEEMAVTGLVGMMR------CGTPRGKENAVAALLELCRSGGASATERVL 638 (715)
Q Consensus 572 --~~~~al~~L~----~La~~~e-~~~~i~~~g~~I~~Lv~lL~------~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 638 (715)
+.+.++.+.. .+..... ....+..-...++.++.++. ..+......|+.+|..++..-|......+.
T Consensus 759 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~ 838 (876)
T d1qgra_ 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333322 2222111 11111111112455544332 246788889999999998865555555554
Q ss_pred hcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh
Q 038217 639 KAPALVGLLQALLFTGTKRARRKAASLARVFQRCEN 674 (715)
Q Consensus 639 ~~~g~i~~L~~Ll~s~~~~~k~~A~~lL~~l~~~~~ 674 (715)
....+.+.|..-..+..+..|..|.++.+.+.+...
T Consensus 839 ~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~ 874 (876)
T d1qgra_ 839 ARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp TSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 423344555556778899999999999998887644
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.94 Score=44.12 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHc--CChHHHHHhhcc-CCHHHHHHHHHHHhhhhcCchh
Q 038217 389 RATAELLIQQLANGSPRAKTVAAREIRLLAKTGKENRAFIAKA--GAIPHLRNLLST-HNPVAQENSVTAMLNLSIYDKN 465 (715)
Q Consensus 389 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s-~d~~~~~~A~~aL~nLs~~~~n 465 (715)
.+.+..|+..|..-+.+.+..++....++.+.....|...++- .--..|..|+.. +++++--++-..|.-+..++.-
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~l 147 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 147 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHH
Confidence 3567888889999999999999999999888766666433221 112333333332 5677777888888999999887
Q ss_pred hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CchhHHHHhc--ccCcHHHHHHHhhcCChhHHHHHHHHHH
Q 038217 466 KSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSA-VHEYKKKIAD--ESGAVEALATLLRLGTPRGKKDAVTALF 542 (715)
Q Consensus 466 k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~I~~--~~g~I~~Lv~LL~~~~~~~~~~A~~aL~ 542 (715)
...|. ....+..+.+.++.+ +-++...|.+++..|-. +......... -...+...-+||.+++--++..++..|.
T Consensus 148 ak~iL-~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 148 AKIIL-WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHH-HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHH-ccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 77777 777888999999988 99999999999987754 3332222222 1245667778899899999999999999
Q ss_pred HhhcCCccHHHHHHh----CChHHHHHhhCC--hhHHHHHHHHHHHHhCCcc---hHHHHhhhCCcHHHHHHHhh
Q 038217 543 NLSTHTDNCVRMIEA----GAVTALVGALGH--EGVAEEAAGALALIVRQPI---GAAAVGEEEMAVTGLVGMMR 608 (715)
Q Consensus 543 nLs~~~~n~~~iv~a----G~v~~Lv~lL~~--~~~~~~al~~L~~La~~~e---~~~~i~~~g~~I~~Lv~lL~ 608 (715)
.+-.+..|...|... .-+..++.+|+| ..++-.|..++...+.+|. .-..|+..+. ..|++++.
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr--~kLl~fl~ 298 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--AKLIEFLS 298 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--HHHHHHHH
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhH--HHHHHHHH
Confidence 999999998887654 457788888874 5899999999998876543 3333343343 44555443
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.63 E-value=2 Score=42.57 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=111.2
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHH-HHHHcCChHHHHHhhcc-----------CCHHHHHHHHHHHhhhhc
Q 038217 395 LIQQLANGS-PRAKTVAAREIRLLAKTGKENRA-FIAKAGAIPHLRNLLST-----------HNPVAQENSVTAMLNLSI 461 (715)
Q Consensus 395 Lv~~L~s~~-~~~~~~A~~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s-----------~d~~~~~~A~~aL~nLs~ 461 (715)
-|..|.++. .+.....+..|+--.+.++-... .| ..+|+..|+.+|.. .+...+..++.+|..+..
T Consensus 7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn 85 (343)
T d2bnxa1 7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 85 (343)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence 345555543 33344556666555555553322 23 46778888887742 135688889999999988
Q ss_pred CchhhhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhccCc---h----------hHHHHhcccCcHHHHHHHhhc
Q 038217 462 YDKNKSRIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSLSAVH---E----------YKKKIADESGAVEALATLLRL 528 (715)
Q Consensus 462 ~~~nk~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~---~----------~~~~I~~~~g~I~~Lv~LL~~ 528 (715)
+..+...++...+++..|+..|.+. ...++..|+.+|..++... + +....++ .+-+..+++.++.
T Consensus 86 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~lv~~l~~ 163 (343)
T d2bnxa1 86 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS 163 (343)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTST
T ss_pred cHHHHHHHHcChHHHHHHHHccCCC-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHHHHHHhc
Confidence 8888777765899999999999887 8899999999998887432 1 1222333 5777888888876
Q ss_pred CC-hhHHHHHHHHHHHhhcCCc-------cHHHHHHhCChHHHHHhhC
Q 038217 529 GT-PRGKKDAVTALFNLSTHTD-------NCVRMIEAGAVTALVGALG 568 (715)
Q Consensus 529 ~~-~~~~~~A~~aL~nLs~~~~-------n~~~iv~aG~v~~Lv~lL~ 568 (715)
+. .+.+..++..+-.|....+ -|..+..+|..+ ++.-|.
T Consensus 164 ~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~ 210 (343)
T d2bnxa1 164 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELR 210 (343)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHT
T ss_pred cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHH
Confidence 54 4566666666666665544 244556666544 455553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=91.37 E-value=0.084 Score=50.13 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=18.0
Q ss_pred CChHHHHHhhccCCHHHHHHHHHH
Q 038217 432 GAIPHLRNLLSTHNPVAQENSVTA 455 (715)
Q Consensus 432 G~i~~Lv~lL~s~d~~~~~~A~~a 455 (715)
-.++.|..|++++|+.++..|+..
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHH
Confidence 346677788888888888887754
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=89.51 E-value=0.043 Score=52.22 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHhcCCCHHHHHHHHHHH-----HHHHh-hChhhHHHHHHcCChHHHHHhhccCCHHHHHHHHHH-----HhhhhcCc
Q 038217 395 LIQQLANGSPRAKTVAAREI-----RLLAK-TGKENRAFIAKAGAIPHLRNLLSTHNPVAQENSVTA-----MLNLSIYD 463 (715)
Q Consensus 395 Lv~~L~s~~~~~~~~A~~~L-----~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~~~~A~~a-----L~nLs~~~ 463 (715)
|...++..+++++..|+..| ..+.. .+...|...+..=..+.|..++.+++..++..++.. |..|..++
T Consensus 71 L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~ 150 (233)
T d1lrva_ 71 LTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDE 150 (233)
T ss_dssp GGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCS
T ss_pred HHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCC
Confidence 34444555555555555432 11111 122333333333334566667777777776666543 22222222
Q ss_pred hh--hhhhhhhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 038217 464 KN--KSRIMDEEGCLGSIVKVLRFGLTTEARENAAA 497 (715)
Q Consensus 464 ~n--k~~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~ 497 (715)
+. +..+. ..-..+.+..+++.. +..+|..++.
T Consensus 151 d~~VR~~aA-~~~~~~~L~~l~~D~-d~~VR~~aa~ 184 (233)
T d1lrva_ 151 DRQVRKLVA-KRLPEESLGLMTQDP-EPEVRRIVAS 184 (233)
T ss_dssp CHHHHHHHH-HHSCGGGGGGSTTCS-SHHHHHHHHH
T ss_pred CHHHHHHHH-HhcCHHHHHHHccCC-CHHHHHHHHH
Confidence 21 33333 223344444455554 6666665554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=14 Score=35.58 Aligned_cols=208 Identities=13% Similarity=0.059 Sum_probs=152.4
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHhhhhcCc-hhhh----hhhhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 038217 428 IAKAGAIPHLRNLLSTHNPVAQENSVTAMLNLSIYD-KNKS----RIMDEEGCLGSIVKVLRFGLTTEARENAAATLFSL 502 (715)
Q Consensus 428 i~~~G~i~~Lv~lL~s~d~~~~~~A~~aL~nLs~~~-~nk~----~I~~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 502 (715)
+...+.+..|+.-|..=+.+.+..++.+..++-... +++. -+.... +.|..++..-.+.+.--.+-..|+..
T Consensus 65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~---eil~~L~~gye~~eiAl~~G~mLREc 141 (330)
T d1upka_ 65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ---NILFMLLKGYESPEIALNCGIMLREC 141 (330)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCT---HHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCH---HHHHHHHhhcCCcchhhhhhHHHHHH
Confidence 445688889999998889999999999999987654 3332 233122 33333333323557777888889999
Q ss_pred ccCchhHHHHhcccCcHHHHHHHhhcCChhHHHHHHHHHHHhhc-CCccHHHHHHhCC---hHHHHHhhCCh--hHHHHH
Q 038217 503 SAVHEYKKKIADESGAVEALATLLRLGTPRGKKDAVTALFNLST-HTDNCVRMIEAGA---VTALVGALGHE--GVAEEA 576 (715)
Q Consensus 503 s~~~~~~~~I~~~~g~I~~Lv~LL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~---v~~Lv~lL~~~--~~~~~a 576 (715)
..++.....|.. ...+..+.+.++.++=+..-+|..++..|-. ++.....+...+. +...-.+|.++ -.+..+
T Consensus 142 ik~e~lak~iL~-s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 142 IRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HhhHHHHHHHHc-cHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 999998888888 7889999999988888899999999988765 4445556665543 55566677543 567889
Q ss_pred HHHHHHHhCCcchHHHHhh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHh
Q 038217 577 AGALALIVRQPIGAAAVGE---EEMAVTGLVGMMRCGTPRGKENAVAALLELCRSG--GASATERVLK 639 (715)
Q Consensus 577 l~~L~~La~~~e~~~~i~~---~g~~I~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~ 639 (715)
+..|..+-....+...+.+ .+.-+..++.+|++.+..++-.|-.+..-+..+. ++.+...+..
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~ 288 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 288 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHH
Confidence 9999999877777776532 3323788889999999999999999988888775 3456655555
|
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.74 E-value=0.33 Score=37.24 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCcCccCccccc-----CceeC--CCccHhhHHHHHHHHHhCCCCCCCCcccccc
Q 038217 291 DFCCPIMLDLMR-----DPVII--STGQTYDRRSIARWMEEGHRTCPKTGQMLVH 338 (715)
Q Consensus 291 ~~~CpIc~~lm~-----dPv~~--~cghtfcr~cI~~w~~~~~~~CP~c~~~l~~ 338 (715)
.-.|.||.+-.- +|.+. .|+.-.||.|++-=.+.|+..||.|+.+...
T Consensus 16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence 458999997553 44444 6888889999998888999999999887643
|