Citrus Sinensis ID: 038224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK
cHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccEEEccccccHHHHHHHHccHHHHHHHccccccEEEEccccccHHHHHHHHHHHcccccEEEEEccccccccccccccccccHHHHHHcccccccccEEEEEccccccccccccccccEEEcccHHHHHHHHHHHHHHccEEEHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHcccccccccccccccc
cccEcccccEEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHccEEEEccccHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHcHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcccccccEcccccccEEEEcccHHHccccccccEEcccccccccccccHHHccEEEEEcHHHHHHHHHHHHHHHcccEcHHHHHHHHHHHHHHHcccccccEEEEEcEEHHHcccHHHHHHHHHHccccccccccHHcccc
SQILEALgatvervrpvsithrdHFVNVARRRALEANELASKRRRAvdkdgkelehingygsdgaiqsskfpsdctggffaDQFENLANFRahyegtgpeiweqtgGELDAFVAAAGTGGTVAGVSRFlqennpnikcflidppgsslfnkvtrgvmytkeeaegrrlknpfdtitegiginrlTQNFMMAKLdgafrgtdREAVEMSRFLVkndglflgsssamnCVGAVRVaqslgpghtIVTILCDSGMRHLSKFYDVhylsqqgltpaaagleflgik
sqilealgatvervrpvsithrdhfvnvarrraleanelaskrrravdkdgkelehingygsdgaiqsSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKcflidppgsslfNKVTRGVMYtkeeaegrrlknpfdtitegiginrltqNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRvaqslgpgHTIVTILCDSGMRHLSKFYDVHYLSQQGLtpaaagleflgik
SQILEALGATVERVRPVSITHRDHFvnvarrraleanelaSKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFvaaagtggtvagvSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK
******LGATVERVRPVSITHRDHFVNVARR***************************************FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFL***
SQILEALGATVERVRPVSITHRDHFVNVARRRALEANE*ASK*RRAVDKDGKELEHINGYGSD*AIQ*SKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKE*********PFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK
SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK
*QILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTP****L******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
P87131395 Cysteine synthase 2 OS=Sc yes no 0.875 0.625 0.5 2e-71
Q54CN7378 Cysteine synthase OS=Dict yes no 0.797 0.595 0.456 4e-60
P53206393 Putative cysteine synthas yes no 0.790 0.567 0.444 2e-50
P50867370 Cysteine synthase OS=Emer no no 0.641 0.489 0.430 2e-38
O59701351 Cysteine synthase 1 OS=Sc no no 0.641 0.515 0.414 6e-38
Q91WT9 561 Cystathionine beta-syntha yes no 0.613 0.308 0.354 4e-23
P32232 561 Cystathionine beta-syntha yes no 0.613 0.308 0.354 4e-23
P35520 551 Cystathionine beta-syntha yes no 0.617 0.315 0.342 6e-23
Q58H57 551 Cystathionine beta-syntha N/A no 0.613 0.313 0.343 2e-22
P63872310 Cysteine synthase OS=Stap yes no 0.712 0.648 0.318 6e-21
>sp|P87131|CYSK2_SCHPO Cysteine synthase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cys12 PE=3 SV=1 Back     alignment and function desciption
 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/282 (50%), Positives = 185/282 (65%), Gaps = 35/282 (12%)

Query: 1   SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGY 60
           S ILE LGA V+RV P  I   +HFVN ARR A  AN         VD      E I G 
Sbjct: 144 SDILELLGAHVQRVTPAPIVDPNHFVNTARRNA--ANH-------TVD------ESIPG- 187

Query: 61  GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
                            G+FA+QFEN AN++AH+  TGPEIW Q  G+LDAF+A +GTGG
Sbjct: 188 ----------------KGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGG 231

Query: 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
           T+AG+SR+L+  +P+I   L DPPGS L++KV  GVM+   E EG R ++  DTI EG+G
Sbjct: 232 TIAGISRYLKSKDPSITVCLADPPGSGLYHKVLHGVMFDLAEREGTRRRHQVDTIVEGVG 291

Query: 181 INRLTQNFMMAK--LDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG 238
           INR+T+NF +A+  +D A+R TD +AV MSR+LV +DGLF+GSSSA+NCV AVR+A+ LG
Sbjct: 292 INRMTRNFSIAEPLIDMAYRVTDEQAVAMSRYLVTHDGLFVGSSSAVNCVAAVRLAKKLG 351

Query: 239 PGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTP-AAAGLEFL 279
           PGH IVT+LCD G RH SK Y+  +L ++ + P   + L+F+
Sbjct: 352 PGHRIVTLLCDPGSRHFSKLYNEEFLRKKNIVPQVPSSLDFV 393

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 7
>sp|Q54CN7|CYSK_DICDI Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1 Back     alignment and function description
>sp|P53206|CYSK_YEAST Putative cysteine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR012W PE=1 SV=1 Back     alignment and function description
>sp|P50867|CYSK_EMENI Cysteine synthase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cysB PE=3 SV=2 Back     alignment and function description
>sp|O59701|CYSK1_SCHPO Cysteine synthase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cys11 PE=3 SV=1 Back     alignment and function description
>sp|Q91WT9|CBS_MOUSE Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3 Back     alignment and function description
>sp|P32232|CBS_RAT Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3 Back     alignment and function description
>sp|P35520|CBS_HUMAN Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2 Back     alignment and function description
>sp|Q58H57|CBS_MACFA Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3 Back     alignment and function description
>sp|P63872|CYSK_STAAW Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
356552603 425 PREDICTED: cysteine synthase 2-like [Gly 1.0 0.663 0.855 1e-139
224056451 424 predicted protein [Populus trichocarpa] 0.996 0.662 0.846 1e-139
356499441 424 PREDICTED: LOW QUALITY PROTEIN: cysteine 1.0 0.665 0.833 1e-135
388510436 416 unknown [Lotus japonicus] 0.996 0.675 0.822 1e-134
225461900 421 PREDICTED: cysteine synthase 2 [Vitis vi 0.996 0.667 0.822 1e-133
147854450 421 hypothetical protein VITISV_024163 [Viti 0.996 0.667 0.822 1e-133
357495035 452 Cysteine synthase [Medicago truncatula] 0.996 0.621 0.758 1e-130
449466151 430 PREDICTED: cysteine synthase 2-like [Cuc 0.985 0.646 0.810 1e-129
15222794 421 cysteine synthase A [Arabidopsis thalian 1.0 0.669 0.783 1e-128
8778327 439 F14J16.13 [Arabidopsis thaliana] 1.0 0.642 0.783 1e-128
>gi|356552603|ref|XP_003544654.1| PREDICTED: cysteine synthase 2-like [Glycine max] Back     alignment and taxonomy information
 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/283 (85%), Positives = 256/283 (90%), Gaps = 1/283 (0%)

Query: 1   SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKE-LEHING 59
           SQILEALGATVERVRPVSITH+DHFVN+ARRRA EANE A KRR +   +GKE  E ING
Sbjct: 143 SQILEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKRRNSQQLNGKEDTEKING 202

Query: 60  YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119
           Y S+G   SS FP DC GGFFADQFENLANFRAHYEGTGPEIWEQT G+LDAFVAAAGTG
Sbjct: 203 YESNGCNYSSLFPEDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGKLDAFVAAAGTG 262

Query: 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
           GTVAGVS+FLQE NPNIKCFL+DPPGS LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI
Sbjct: 263 GTVAGVSKFLQEKNPNIKCFLLDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 322

Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGP 239
           GINR+T+NF MAKLDGAFRGTDREAVEMSRFL+KNDGLFLGSSSAMNCVGAVRVAQ++G 
Sbjct: 323 GINRITRNFAMAKLDGAFRGTDREAVEMSRFLLKNDGLFLGSSSAMNCVGAVRVAQAIGT 382

Query: 240 GHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK 282
           GHTIVTILCDSGMRHLSKFYD  YLSQ GLTP A GLEFLG+K
Sbjct: 383 GHTIVTILCDSGMRHLSKFYDAEYLSQLGLTPKAIGLEFLGVK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056451|ref|XP_002298863.1| predicted protein [Populus trichocarpa] gi|222846121|gb|EEE83668.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499441|ref|XP_003518549.1| PREDICTED: LOW QUALITY PROTEIN: cysteine synthase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|388510436|gb|AFK43284.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225461900|ref|XP_002266459.1| PREDICTED: cysteine synthase 2 [Vitis vinifera] gi|296089907|emb|CBI39726.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147854450|emb|CAN80713.1| hypothetical protein VITISV_024163 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357495035|ref|XP_003617806.1| Cysteine synthase [Medicago truncatula] gi|355519141|gb|AET00765.1| Cysteine synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466151|ref|XP_004150790.1| PREDICTED: cysteine synthase 2-like [Cucumis sativus] gi|449515325|ref|XP_004164700.1| PREDICTED: cysteine synthase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15222794|ref|NP_175984.1| cysteine synthase A [Arabidopsis thaliana] gi|46518441|gb|AAS99702.1| At1g55880 [Arabidopsis thaliana] gi|110741637|dbj|BAE98765.1| hypothetical protein [Arabidopsis thaliana] gi|332195192|gb|AEE33313.1| cysteine synthase A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8778327|gb|AAF79336.1|AC002304_29 F14J16.13 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2012110421 AT1G55880 [Arabidopsis thalian 1.0 0.669 0.695 2e-102
POMBASE|SPAC3A12.17c395 cys12 "cysteine synthase Cys12 0.716 0.511 0.517 6.9e-59
ASPGD|ASPL0000041991428 cysF [Emericella nidulans (tax 0.712 0.469 0.485 4.2e-51
DICTYBASE|DDB_G0292840378 cysK "cysteine synthase" [Dict 0.670 0.5 0.502 8.7e-51
CGD|CAL0006235398 orf19.5574 [Candida albicans ( 0.638 0.452 0.519 1.8e-46
SGD|S000003244393 YGR012W "Putative cysteine syn 0.634 0.455 0.483 9.7e-46
UNIPROTKB|Q0C2A6335 HNE_1420 "Cysteine synthase" [ 0.776 0.653 0.387 5.8e-34
UNIPROTKB|G4N769375 MGG_06466 "Cysteine synthase" 0.652 0.490 0.392 1.4e-32
TIGR_CMR|SPO_1921344 SPO_1921 "pyridoxal-phosphate 0.638 0.523 0.409 1.6e-31
ASPGD|ASPL0000013431370 cysB [Emericella nidulans (tax 0.652 0.497 0.392 4.2e-31
TAIR|locus:2012110 AT1G55880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 196/282 (69%), Positives = 219/282 (77%)

Query:     1 SQILEALGATVERVRPVSITHRDHFXXXXXXXXXXXXXXXSKRRRAVDKDGKELEHINGY 60
             SQI+EALGA+VERVRPVSITH+DH+               SKRR   + +G   E  NG 
Sbjct:   140 SQIIEALGASVERVRPVSITHKDHYVNIARRRADEANELASKRRLGSETNGIHQEKTNGC 199

Query:    61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXX 120
               +   + S F    TGGFFADQFENLAN+RAHYEGTGPEIW QT G +DAF        
Sbjct:   200 TVEEVKEPSLFSDSVTGGFFADQFENLANYRAHYEGTGPEIWHQTQGNIDAFVAAAGTGG 259

Query:   121 XXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
                  SRFLQ+ N  +KCFLIDPPGS L+NKVTRGVMYT+EEAEGRRLKNPFDTITEGIG
Sbjct:   260 TLAGVSRFLQDKNERVKCFLIDPPGSGLYNKVTRGVMYTREEAEGRRLKNPFDTITEGIG 319

Query:   181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG 240
             INRLT+NF+MAKLDG FRGTD+EAVEMSRFL+KNDGLF+GSSSAMNCVGAVRVAQ+LGPG
Sbjct:   320 INRLTKNFLMAKLDGGFRGTDKEAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQTLGPG 379

Query:   241 HTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGIK 282
             HTIVTILCDSGMRHLSKF+D  YL+  GL+P A GLEFLGIK
Sbjct:   380 HTIVTILCDSGMRHLSKFHDPKYLNLYGLSPTAIGLEFLGIK 421
GO:0003824 "catalytic activity" evidence=IEA
GO:0006520 "cellular amino acid metabolic process" evidence=ISS
GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0048573 "photoperiodism, flowering" evidence=RCA
POMBASE|SPAC3A12.17c cys12 "cysteine synthase Cys12" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000041991 cysF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292840 cysK "cysteine synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0006235 orf19.5574 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000003244 YGR012W "Putative cysteine synthase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2A6 HNE_1420 "Cysteine synthase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|G4N769 MGG_06466 "Cysteine synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1921 SPO_1921 "pyridoxal-phosphate dependent enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013431 cysB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_I4741
phosphateglycerate kinase (EC-2.5.1.47) (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0039007102
RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa)
  •  •••0.909
gw1.142.135.1
hypothetical protein (336 aa)
  •  •••0.908
estExt_fgenesh4_pm.C_LG_XV0472
serine O-acetyltransferase (EC-2.3.1.30) (293 aa)
     •• 0.908
gw1.XIV.1323.1
cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa)
  •  •••0.908
eugene3.00700113
hypothetical protein (320 aa)
  •  •••0.908
estExt_fgenesh4_pg.C_410108
serine O-acetyltransferase (EC-2.3.1.30) (294 aa)
     •• 0.908
eugene3.00700110
hypothetical protein (331 aa)
  •  •••0.908
fgenesh4_pg.C_LG_VIII001376
O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)
  •  •••0.908
estExt_fgenesh4_pg.C_700106
O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)
  •  •••0.907
eugene3.00700109
hypothetical protein (324 aa)
  •  •••0.907

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
PLN02356423 PLN02356, PLN02356, phosphateglycerate kinase 0.0
PRK10717330 PRK10717, PRK10717, cysteine synthase A; Provision 4e-88
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 7e-74
COG0031300 COG0031, CysK, Cysteine synthase [Amino acid trans 4e-64
TIGR01136299 TIGR01136, cysKM, cysteine synthase 1e-42
TIGR01139298 TIGR01139, cysK, cysteine synthase A 2e-39
TIGR01137 454 TIGR01137, cysta_beta, cystathionine beta-synthase 6e-39
PRK11761296 PRK11761, cysM, cysteine synthase B; Provisional 6e-35
TIGR03945304 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio 2e-30
PLN02556368 PLN02556, PLN02556, cysteine synthase/L-3-cyanoala 1e-29
TIGR01138290 TIGR01138, cysM, cysteine synthase B 7e-29
PLN02565322 PLN02565, PLN02565, cysteine synthase 1e-28
PLN00011323 PLN00011, PLN00011, cysteine synthase 3e-27
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 3e-26
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 7e-26
PLN03013429 PLN03013, PLN03013, cysteine synthase 5e-24
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 2e-04
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 0.003
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase Back     alignment and domain information 
 Score =  526 bits (1356), Expect = 0.0
 Identities = 241/281 (85%), Positives = 257/281 (91%)

Query: 1   SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGY 60
           SQILEALGATVERVRPVSITH+DH+VN+ARRRALEANELASKRR+  + DG  LE  NG 
Sbjct: 143 SQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGC 202

Query: 61  GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
            S+   ++S F S CTGGFFADQFENLANFRAHYEGTGPEIWEQT G LDAFVAAAGTGG
Sbjct: 203 ISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGG 262

Query: 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
           T+AGVSRFLQE NPNIKCFLIDPPGS LFNKVTRGVMYT+EEAEGRRLKNPFDTITEGIG
Sbjct: 263 TLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIG 322

Query: 181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG 240
           INRLTQNF+MAKLDGAFRGTD+EAVEMSR+L+KNDGLF+GSSSAMNCVGAVRVAQSLGPG
Sbjct: 323 INRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPG 382

Query: 241 HTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGI 281
           HTIVTILCDSGMRHLSKF+D  YLSQ GLTP A GLEFLGI
Sbjct: 383 HTIVTILCDSGMRHLSKFHDPQYLSQHGLTPTATGLEFLGI 423

Length = 423
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase Back     alignment and domain information
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A Back     alignment and domain information
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase Back     alignment and domain information
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA Back     alignment and domain information
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B Back     alignment and domain information
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase Back     alignment and domain information
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PLN02356423 phosphateglycerate kinase 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
PLN02565322 cysteine synthase 100.0
KOG1481391 consensus Cysteine synthase [Amino acid transport 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PLN03013429 cysteine synthase 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PLN00011323 cysteine synthase 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK06382406 threonine dehydratase; Provisional 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PRK08526403 threonine dehydratase; Provisional 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PLN02550 591 threonine dehydratase 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK08198404 threonine dehydratase; Provisional 100.0
PRK07334403 threonine dehydratase; Provisional 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
TIGR02079409 THD1 threonine dehydratase. This model represents 100.0
PRK08329347 threonine synthase; Validated 100.0
PRK08638333 threonine dehydratase; Validated 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PRK08639420 threonine dehydratase; Validated 100.0
PLN02970328 serine racemase 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PRK06815317 hypothetical protein; Provisional 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK06110322 hypothetical protein; Provisional 100.0
PRK06260397 threonine synthase; Validated 100.0
PLN02569484 threonine synthase 100.0
PRK06450338 threonine synthase; Validated 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PRK07409353 threonine synthase; Validated 100.0
KOG1250457 consensus Threonine/serine dehydratases [Amino aci 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PRK05638442 threonine synthase; Validated 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK06381319 threonine synthase; Validated 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 99.98
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 99.97
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 99.97
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 99.97
PRK13028402 tryptophan synthase subunit beta; Provisional 99.97
PRK04346397 tryptophan synthase subunit beta; Validated 99.97
PLN02618410 tryptophan synthase, beta chain 99.97
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 99.97
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 99.97
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 99.97
PRK12391427 tryptophan synthase subunit beta; Reviewed 99.97
PRK03910331 D-cysteine desulfhydrase; Validated 99.97
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 99.96
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.96
COG0498411 ThrC Threonine synthase [Amino acid transport and 99.96
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 99.96
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 99.96
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.95
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.94
PRK09225462 threonine synthase; Validated 99.88
cd01560460 Thr-synth_2 Threonine synthase catalyzes the final 99.86
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.83
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 99.81
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.75
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.7
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 99.66
KOG2616266 consensus Pyridoxalphosphate-dependent enzyme/pred 87.78
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 81.49
>PLN02356 phosphateglycerate kinase Back     alignment and domain information 
Probab=100.00  E-value=8.6e-46  Score=347.17  Aligned_cols=241  Identities=80%  Similarity=1.249  Sum_probs=202.0

Q ss_pred             HHhHHHHHhcCCeEEEeCC-------Ch--------hHHHHHhccCcc--------------------c--------CCC
Q 038224           41 SKRRRAVDKDGKELEHING-------YG--------SDGAIQSSKFPS--------------------D--------CTG   77 (282)
Q Consensus        41 ~~~~~~~~~~GA~v~~~~g-------~~--------~~a~~~a~~~~~--------------------~--------~~~   77 (282)
                      .+|+++|+.|||+|+.+++       ++        +++.+.+.+..+                    +        .++
T Consensus       140 ~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (423)
T PLN02356        140 IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTG  219 (423)
T ss_pred             HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCC
Confidence            3688999999999999964       23        334444444322                    0        147


Q ss_pred             cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhcccc
Q 038224           78 GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVM  157 (282)
Q Consensus        78 ~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~  157 (282)
                      ++|++||+||.++..|+.+||+||++|++++||+||+|+|+|||++|++++||+++|+++|++|||.+++++..+..+..
T Consensus       220 ~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~  299 (423)
T PLN02356        220 GFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVM  299 (423)
T ss_pred             cEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchh
Confidence            89999999999988888888999999998789999999999999999999999999999999999999875543211110


Q ss_pred             chhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc
Q 038224          158 YTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL  237 (282)
Q Consensus       158 ~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~  237 (282)
                      +......|+++..+.+|+++|++.+.++..+....+|+++.|+|+|+++++++|++++|+++|||||++++|++++++++
T Consensus       300 ~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~  379 (423)
T PLN02356        300 YTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL  379 (423)
T ss_pred             hhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh
Confidence            00011234444445589999999988888888888999999999999999999999999999999999999999998777


Q ss_pred             CCCCEEEEEecCCCcchhhhhcChhHHhhCCCCCCCCcccccCC
Q 038224          238 GPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGI  281 (282)
Q Consensus       238 ~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~~~~~~~~~~~~  281 (282)
                      +++++||+|+||+|.||++++|+++|+.++++.+.+.++|||||
T Consensus       380 ~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (423)
T PLN02356        380 GPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTPTATGLEFLGI  423 (423)
T ss_pred             CCCCeEEEEECCCCcchhhhhcCHHHHHhcCCCCCcccchhccC
Confidence            67899999999999999999999999999999999999999997

>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1ve1_A304 Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh 1e-22
3fca_A291 Genetic Incorporation Of A Metal-Ion Chelating Amin 4e-18
1o58_A303 Crystal Structure Of O-Acetylserine Sulfhydrylase ( 5e-18
3vc3_A344 Crystal Structure Of Beta-Cyanoalanine Synthase K95 4e-17
3vbe_A344 Crystal Structure Of Beta-Cyanoalanine Synthase In 4e-17
1m54_A363 Cystathionine-Beta Synthase: Reduced Vicinal Thiols 5e-17
1jbq_A435 Structure Of Human Cystathionine Beta-Synthase: A U 7e-17
2isq_A320 Crystal Structure Of O-Acetylserine Sulfhydrylase F 1e-16
1z7w_A322 Crystal Structure Of O-Acetylserine Sulfhydrylase F 1e-16
1z7y_A322 Crystal Structure Of The Arabidopsis Thaliana O-Ace 1e-16
4aec_A430 Crystal Structure Of The Arabidopsis Thaliana O-Ace 5e-15
2bhs_A303 Crystal Structure Of Cysteine Synthase B Length = 3 2e-14
2bht_A303 Crystal Structure Of O-Acetylserine Sulfhydrylase B 2e-14
2v03_A303 High Resolution Structure And Catalysis Of An O- Ac 3e-14
2jc3_A303 Structure Of O-acetylserine Sulfhydrylase B From Sa 4e-14
1oas_A322 O-Acetylserine Sulfhydrylase From Salmonella Typhim 5e-13
1d6s_A322 Crystal Structure Of The K41a Mutant Of O-Acetylser 5e-13
2egu_A308 Crystal Structure Of O-Acetylserine Sulfhydrase Fro 1e-11
4air_A354 Leishmania Major Cysteine Synthase Length = 354 4e-11
2q3b_A313 1.8 A Resolution Crystal Structure Of O-Acetylserin 6e-11
2q3d_A313 2.2 A Resolution Crystal Structure Of O-acetylserin 6e-11
3t4p_A334 Crystal Structure Of O-Acetyl Serine Sulfhydrylase 2e-10
3rr2_A314 Structure Of A Cysteine Synthase (O-Acetylserine Su 5e-10
4i1y_A314 The Structure Of Cysteine Synthase From Mycobacteri 8e-10
3bm5_A338 Crystal Structure Of O-Acetyl-Serine Sulfhydrylase 1e-06
2pqm_A343 Crystal Structure Of Cysteine Synthase (Oass) From 1e-06
1y7l_A316 O-Acetylserine Sulfhydrylase Complex Length = 316 1e-05
3pc2_A 527 Full Length Structure Of Cystathionine Beta-Synthas 2e-05
3vsc_A389 Crystal Structure Of The K127a Mutant Of O-Phosphos 9e-05
1wkv_A389 Crystal Structure Of O-Phosphoserine Sulfhydrylase 9e-05
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 77  GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNI 136
           G F  DQF+N AN RAHYE TGPE++E   G +DAF              R+L+E  P++
Sbjct: 135 GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHV 194
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
           K   ++P  S++ +              G+  ++ F    +G+G   + +N  ++ LDG 
Sbjct: 195 KVIAVEPARSNVLSG-------------GKMGQHGF----QGMGPGFIPENLDLSLLDGV 237
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
            +  + +A  ++R L + +GLFLG SS      A++VA+ LGPG  +  I  D G ++LS
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 Back     alignment and structure
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 Back     alignment and structure
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 Back     alignment and structure
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 Back     alignment and structure
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 Back     alignment and structure
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 Back     alignment and structure
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 Back     alignment and structure
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 Back     alignment and structure
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 Back     alignment and structure
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 Back     alignment and structure
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 Back     alignment and structure
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 Back     alignment and structure
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 Back     alignment and structure
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 Back     alignment and structure
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 Back     alignment and structure
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 Back     alignment and structure
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 Back     alignment and structure
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 Back     alignment and structure
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 Back     alignment and structure
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 Back     alignment and structure
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 Back     alignment and structure
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 Back     alignment and structure
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 Back     alignment and structure
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 Back     alignment and structure
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 Back     alignment and structure
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 Back     alignment and structure
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 Back     alignment and structure
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 Back     alignment and structure
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 1e-58
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 1e-57
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 9e-47
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 1e-44
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 1e-43
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 3e-43
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 5e-42
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 4e-41
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 9e-41
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 2e-40
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 2e-40
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 2e-39
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 6e-39
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 5e-38
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 4e-04
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 5e-04
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 5e-04
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 Back     alignment and structure
 Score =  192 bits (489), Expect = 1e-58
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 77  GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
                DQ+ N +N  AHY+ T  EI +Q  G+LD  VA+ GTGGT+ G++R L+E  P  
Sbjct: 238 NSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGC 297

Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
           +   +DP GS L             + E    +       EGIG + +        +D  
Sbjct: 298 RIIGVDPEGSILAEPEELN------QTEQTTYE------VEGIGYDFIPTVLDRTVVDKW 345

Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
           F+  D EA   +R L+  +GL  G S+      AV+ AQ L  G   V IL DS   +++
Sbjct: 346 FKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMT 405

Query: 257 KFYDVHYLSQQGLTP 271
           KF    ++ Q+G   
Sbjct: 406 KFLSDRWMLQKGFLK 420
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 99.97
1x1q_A418 Tryptophan synthase beta chain; structural genomic 99.97
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 99.97
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 99.97
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 99.96
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.96
4f4f_A468 Threonine synthase; structural genomics, niaid, na 99.93
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 99.93
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 99.9
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-40  Score=302.89  Aligned_cols=213  Identities=28%  Similarity=0.373  Sum_probs=183.1

Q ss_pred             HHhHHHHHhcCCeEEEeCCC--hhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecC
Q 038224           41 SKRRRAVDKDGKELEHINGY--GSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG  117 (282)
Q Consensus        41 ~~~~~~~~~~GA~v~~~~g~--~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG  117 (282)
                      ..|+++|+.|||+|+.++++  |+++.+.+.+++++.+++ ++++||+||.++++||.++++||++|++++||+||+|+|
T Consensus        98 ~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG  177 (316)
T 1y7l_A           98 LERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVG  177 (316)
T ss_dssp             HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECS
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence            35889999999999999996  999999999887664456 889999999999988999999999999877999999999


Q ss_pred             hhHHHHHHHHHHHhcC-CCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeE
Q 038224          118 TGGTVAGVSRFLQENN-PNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA  196 (282)
Q Consensus       118 ~GG~~aGi~~g~k~~~-~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~  196 (282)
                      +||+++|++.+||+++ |.++||+|||.+++.+..++.|.          ++. ...+.++||+.+..++.+....+|++
T Consensus       178 ~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~----------~~~-~~~~~~~gi~~~~~~~~~~~~~~d~~  246 (316)
T 1y7l_A          178 TGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGE----------EVK-PGPHKIQGIGAGFIPKNLDLSIIDRV  246 (316)
T ss_dssp             SSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTC----------CCC-CCCCSCTTSCCSSCCTTCCGGGCCEE
T ss_pred             ccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCC----------ccC-CCCcccCcCCCCCCCchhhHhhCCEE
Confidence            9999999999999998 99999999999998554455442          221 23566789987766777777789999


Q ss_pred             EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-CCCCEEEEEecCCCcchhhhhcChhHH
Q 038224          197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFYDVHYL  264 (282)
Q Consensus       197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-~~~~~Vv~v~tGgg~ky~~~~~~~~w~  264 (282)
                      +.|+|+|++++++.|++++|+++||+||++++|+++++++. .++++||+|+||++.||++++|+++|-
T Consensus       247 ~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~  315 (316)
T 1y7l_A          247 ETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGIE  315 (316)
T ss_dssp             EEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC----
T ss_pred             EEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccCCcccccccc
Confidence            99999999999999999999999999999999999987653 367899999999999999998888994
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 2e-43
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 3e-42
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 6e-41
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 4e-40
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 4e-38
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 4e-37
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 5e-30
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 2e-22
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 2e-20
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 5e-20
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 9e-19
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 2e-14
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 5e-11
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 2e-09
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 2e-09
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-08
d1e5xa_477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 9e-07
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-05
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score =  147 bits (372), Expect = 2e-43
 Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 76  TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQE-NNP 134
           TG    +QFEN  N  +H   TGPEI +Q   ++DAFVA  GTGGT++GV R L+     
Sbjct: 127 TGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGN 186

Query: 135 NIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLD 194
            +K   ++P  S + +    G                     +GIG   + +    + +D
Sbjct: 187 GVKIVAVEPAKSPVLSGGQPG-----------------KHAIQGIGAGFVPKILDRSVID 229

Query: 195 GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRH 254
                 D EA EM+R+L K +GL +G SS  N   A++VAQ LGP   +VT+  D   R+
Sbjct: 230 EVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERY 289

Query: 255 LSK 257
           LS 
Sbjct: 290 LSI 292
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.98
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.96
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.96
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 99.95
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 99.9
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.85
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.79
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.77
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.57
d1kl7a_511 Threonine synthase {Baker's yeast (Saccharomyces c 98.54
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-40  Score=301.06  Aligned_cols=217  Identities=29%  Similarity=0.433  Sum_probs=183.2

Q ss_pred             HhHHHHHhcCCeEEEeCCChh-----HHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEec
Q 038224           42 KRRRAVDKDGKELEHINGYGS-----DGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAA  116 (282)
Q Consensus        42 ~~~~~~~~~GA~v~~~~g~~~-----~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpv  116 (282)
                      +|+.+|+.|||+|+.++++..     +....+.+...+..+++|.++++++.++..||+|+++||++|++++||+||+|+
T Consensus       134 ~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~v  213 (355)
T d1jbqa_         134 EKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASV  213 (355)
T ss_dssp             HHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEEC
T ss_pred             HHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecc
Confidence            578899999999999987642     223333333344467888899888888887899999999999998899999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeE
Q 038224          117 GTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA  196 (282)
Q Consensus       117 G~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~  196 (282)
                      |+||+++|++++|++.+|.++|++|||.+++++......          .  .....+.++|++.+..+.......++++
T Consensus       214 G~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~----------~--~~~~~~~i~gi~~~~~~~~~~~~~~~~~  281 (355)
T d1jbqa_         214 GTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELN----------Q--TEQTTYEVEGIGYDFIPTVLDRTVVDKW  281 (355)
T ss_dssp             SSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGG----------C--CSCCCCSCCSCCCSSCCTTCCGGGCCEE
T ss_pred             cCCchHHHHHHHHhhcCCcceEEeecccCCccccccccc----------c--cccccccccccccccchhhhhhhheeee
Confidence            999999999999999999999999999998855432110          0  1133456788888877777778889999


Q ss_pred             EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcChhHHhhCCCC
Q 038224          197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLT  270 (282)
Q Consensus       197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~  270 (282)
                      +.|+|+|++++++.|++++||++|||||++++|+++++++++++++||+|+||+|.||+|++|+++||.+++|.
T Consensus       282 ~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~  355 (355)
T d1jbqa_         282 FKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL  355 (355)
T ss_dssp             EEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGGGCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHHHHHHHhcCCcCEEEEEECCCCccccccccCHHHHHHCCCC
Confidence            99999999999999999999999999999999999999888889999999999999999999999999999974
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure