Citrus Sinensis ID: 038225

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHEEccccccccccHHHHccccccccEEEEEEcEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHcEEHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtslgalsaqvgvgrgtQESFLFLRSscgdafclkkeTVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKevcqgdetsVEYKVAWDQVEEVSQAKADLRLKL
Flexible Loop (DISEMBL)
mtslgalsaqvgvgrgTQESFLFLRSSCGDAFCLKKETVKVNVKGmakfkgthmrekELTEMIEQKVREakevcqgdetSVEYKVAWDQVEevsqakadlrlkl
Low Complexity Region (SEG)
MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL
Disordered region (IsUnstruct)
***********GVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKG****************************SVEYKVAWDQ***************
Disordered Region (DISOPRED)
************************************ETVKVNVKGM**********************************VEYKVAWDQVEEVSQAK**L****
Disordered Region (DISEMBL)
MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL
Disordered Region (DISPRO)
*****A*S***GVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKAD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q9C9K2	134	Calvin cycle protein CP12	yes	no	0.596	0.462	0.645	2e-16
O22914	124	Calvin cycle protein CP12	no	no	0.576	0.483	0.419	0.0002
Q9LZP9	131	Calvin cycle protein CP12	no	no	0.432	0.343	0.422	0.0002

>sp|Q9C9K2|CP123_ARATH Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 43  VKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRL 102
            K  AK+ GT MRE++L+EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+
Sbjct: 47  TKATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRI 106

Query: 103 KL 104
           KL
Sbjct: 107 KL 108

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|O22914|CP121_ARATH Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 42  NVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLR 101
           ++K M   K T   E E++E +E+ ++EAKE C  D  S E   AWD+VEE+S A +  R
Sbjct: 38  SMKRMVVVKATS--EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHAR 95

Query: 102 LK 103
            K
Sbjct: 96  DK 97

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZP9|CP122_ARATH Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 59  LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct: 60  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 104

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
255539356	142	conserved hypothetical protein [Ricinus	0.990	0.725	0.539	1e-20
225457681	134	PREDICTED: calvin cycle protein CP12-lik	0.971	0.753	0.539	2e-18
297745618	94	unnamed protein product [Vitis vinifera]	0.576	0.638	0.766	2e-17
224065629	148	predicted protein [Populus trichocarpa]	0.567	0.398	0.779	6e-17
224083376	122	predicted protein [Populus trichocarpa]	0.567	0.483	0.728	1e-15
297839527	135	hypothetical protein ARALYDRAFT_895539 [	0.932	0.718	0.5	3e-15
18411140	134	CP12 domain-containing protein 3 [Arabid	0.596	0.462	0.645	7e-15
21553496	134	unknown [Arabidopsis thaliana]	0.596	0.462	0.645	7e-15
116792472	135	unknown [Picea sitchensis]	0.557	0.429	0.620	4e-13
297726585	141	Os08g0513400 [Oryza sativa Japonica Grou	0.548	0.404	0.534	4e-08

>gi|255539356|ref|XP_002510743.1| conserved hypothetical protein [Ricinus communis] gi|223551444|gb|EEF52930.1| conserved hypothetical protein [Ricinus communis]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 73/115 (63%), Gaps = 12/115 (10%)

Query: 2   TSLGALSAQVGVGRGTQESFLFLRSSCG----DAFCLKKETVK---VNVK-----GMAKF 49
            SL A+ +    G     S  FL  SC      + CLK+ T     +N++     G  KF
Sbjct: 4   NSLVAVLSAPARGTSILSSSSFLPRSCNIFTNSSICLKRRTENKGGMNLRVEAMGGAPKF 63

Query: 50  KGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           KGT MREK LTEMIE+KV EAKEVC+GD+TS E KVAWD+VEEVSQAKAD RLKL
Sbjct: 64  KGTQMREKHLTEMIEKKVMEAKEVCEGDQTSDECKVAWDEVEEVSQAKADFRLKL 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457681|ref|XP_002276622.1| PREDICTED: calvin cycle protein CP12-like isoform 1 [Vitis vinifera] gi|359491885|ref|XP_003634338.1| PREDICTED: calvin cycle protein CP12-like isoform 2 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 73/113 (64%), Gaps = 12/113 (10%)

Query: 1   MTSLGALSAQVGVGRGTQESFLF-LRSSCGDAFC--------LKKETVKVNVKGMAKFKG 51
           M S  AL A     +G+  S  F +RS    A C         KK  + V   G+ KFKG
Sbjct: 1   MASFVALCAPSHGSQGSILSSSFSIRSG---ALCDVSRPLRSPKKVNLCVKAMGVVKFKG 57

Query: 52  THMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           T MREK+LTE+IE+KV EAK+VC+GDETS E KVAWD+VEEVSQAKADLR K+
Sbjct: 58  TQMREKQLTELIEKKVLEAKQVCEGDETSDECKVAWDEVEEVSQAKADLRRKM 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745618|emb|CBI40783.3| unnamed protein product [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 54/60 (90%)

Query: 45  GMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           G+ KFKGT MREK+LTE+IE+KV EAK+VC+GDETS E KVAWD+VEEVSQAKADLR K+
Sbjct: 11  GVVKFKGTQMREKQLTELIEKKVLEAKQVCEGDETSDECKVAWDEVEEVSQAKADLRRKM 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065629|ref|XP_002301892.1| predicted protein [Populus trichocarpa] gi|222843618|gb|EEE81165.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 46  MAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           +AKFKGT MREK+L EMIE+KV EAKEVC+GDETS E KVAWD+VEEVSQAKAD R +L
Sbjct: 66  VAKFKGTQMREKQLAEMIEKKVVEAKEVCEGDETSDECKVAWDEVEEVSQAKADFRRRL 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083376|ref|XP_002307003.1| predicted protein [Populus trichocarpa] gi|222856452|gb|EEE93999.1| predicted protein [Populus trichocarpa]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 46  MAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           +A+FKGT +R + LTEMIE+KV EAKE C+GD TSVE KVAWD+VEEVSQAKAD RL+L
Sbjct: 60  VARFKGTLVRNQLLTEMIEEKVIEAKEACKGDATSVECKVAWDEVEEVSQAKADFRLRL 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839527|ref|XP_002887645.1| hypothetical protein ARALYDRAFT_895539 [Arabidopsis lyrata subsp. lyrata] gi|297333486|gb|EFH63904.1| hypothetical protein ARALYDRAFT_895539 [Arabidopsis lyrata subsp. lyrata]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 7/104 (6%)

Query: 8   SAQVGVGRGTQESFLFLRS-SCGDAFCLKKETVKVNVKGM------AKFKGTHMREKELT 60
           +A+V  GR    S    R+ S G      +ETV    + M      AK+KGT MRE++L+
Sbjct: 6   TAKVMHGRVLLPSHRERRTISTGSEILRLRETVPKRFRLMMVTTATAKYKGTKMREEKLS 65

Query: 61  EMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
           EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+KL
Sbjct: 66  EMIEEKVKEATEVCEAEERSEECRVAWDEVEEVSQARADLRVKL 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411140|ref|NP_565134.1| CP12 domain-containing protein 3 [Arabidopsis thaliana] gi|75169727|sp|Q9C9K2.1|CP123_ARATH RecName: Full=Calvin cycle protein CP12-3, chloroplastic; AltName: Full=CP12 domain-containing protein 3; AltName: Full=Chloroplast protein 12-3; Flags: Precursor gi|12323971|gb|AAG51942.1|AC015450_3 hypothetical protein; 64587-64991 [Arabidopsis thaliana] gi|28466821|gb|AAO44019.1| At1g76560 [Arabidopsis thaliana] gi|110735679|dbj|BAE99820.1| hypothetical protein [Arabidopsis thaliana] gi|332197738|gb|AEE35859.1| CP12 domain-containing protein 3 [Arabidopsis thaliana]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 43  VKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRL 102
            K  AK+ GT MRE++L+EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+
Sbjct: 47  TKATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRI 106

Query: 103 KL 104
           KL
Sbjct: 107 KL 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553496|gb|AAM62589.1| unknown [Arabidopsis thaliana]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 43  VKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRL 102
            K  AK+ GT MRE++L+EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+
Sbjct: 47  TKATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRI 106

Query: 103 KL 104
           KL
Sbjct: 107 KL 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792472|gb|ABK26381.1| unknown [Picea sitchensis]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 51/58 (87%)

Query: 44  KGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLR 101
           + + KFKGT++RE++L+++I +KV EA+EVCQG+E+S E +VAWD+VEEVSQAKA LR
Sbjct: 51  RAVPKFKGTYVREQKLSDLIVEKVGEAQEVCQGNESSDECRVAWDEVEEVSQAKAHLR 108

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297726585|ref|NP_001175656.1| Os08g0513400 [Oryza sativa Japonica Group] gi|42408810|dbj|BAD10071.1| hypothetical protein [Oryza sativa Japonica Group] gi|125562164|gb|EAZ07612.1| hypothetical protein OsI_29863 [Oryza sativa Indica Group] gi|125603996|gb|EAZ43321.1| hypothetical protein OsJ_27917 [Oryza sativa Japonica Group] gi|255678576|dbj|BAH94384.1| Os08g0513400 [Oryza sativa Japonica Group]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 48  KFKGTHMREKELTEMIEQKVREAKEVCQGDET-SVEYKVAWDQVEEVSQAKADLRLKL 104
           ++KGT  +E  L+E+IE+KV EA E C G+       +VAWD+VEEVSQAKADLR ++
Sbjct: 54  RYKGTARKEAALSELIERKVAEATEACAGEAAGDAGCRVAWDEVEEVSQAKADLRRRI 111

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2011676	134	CP12-3 "AT1G76560" [Arabidopsi	0.586	0.455	0.655	4.1e-17
TAIR|locus:2065220	124	CP12-1 "AT2G47400" [Arabidopsi	0.576	0.483	0.419	4.8e-07
TAIR|locus:2096009	131	CP12-2 "CP12 domain-containing	0.461	0.366	0.416	4.3e-06

TAIR|locus:2011676 CP12-3 "AT1G76560" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/61 (65%), Positives = 52/61 (85%)

Query:    44 KGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
             K  AK+ GT MRE++L+EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+K
Sbjct:    48 KATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIK 107

Query:   104 L 104
             L
Sbjct:   108 L 108

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

TAIR|locus:2065220 CP12-1 "AT2G47400" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query:    42 NVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLR 101
             ++K M   K T   E E++E +E+ ++EAKE C  D  S E   AWD+VEE+S A +  R
Sbjct:    38 SMKRMVVVKATS--EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHAR 95

Query:   102 LK 103
              K
Sbjct:    96 DK 97

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=ISS;IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2096009 CP12-2 "CP12 domain-containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query:    56 EKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
             E  +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct:    57 EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104       104   0.00091  102 3  11 23  0.43    30
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  534 (57 KB)
  Total size of DFA:  105 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.80u 0.12s 12.92t   Elapsed:  00:00:00
  Total cpu time:  12.80u 0.12s 12.92t   Elapsed:  00:00:00
  Start:  Mon May 20 17:58:40 2013   End:  Mon May 20 17:58:40 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=ISS;IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0018316 "peptide cross-linking via L-cystine" evidence=TAS

GO:0019253 "reductive pentose-phosphate cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0003001601	hypothetical protein (149 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.152.106.1	hypothetical protein (199 aa)			•						0.506
	grail3.0089000701	hypothetical protein (311 aa)			•						0.506
	grail3.0025021301	hypothetical protein (173 aa)			•						0.506
	eugene3.14640002	annotation not avaliable (58 aa)			•						0.506
	eugene3.00181050	hypothetical protein (120 aa)			•						0.506
	eugene3.00090150	hypothetical protein (129 aa)			•						0.506
	eugene3.00061626	hypothetical protein (259 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV3823	hypothetical protein (206 aa)			•						0.506
	gw1.XIII.355.1	hypothetical protein (158 aa)			•						0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
pfam02672	71	pfam02672, CP12, CP12 domain	1e-07
PLN00204	126	PLN00204, PLN00204, CP12 gene family protein; Prov	1e-06
smart01093	72	smart01093, CP12, CP12 domain	1e-05

>gnl|CDD|202342 pfam02672, CP12, CP12 domain

 Score = 44.6 bits (106), Expect = 1e-07
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 59  LTEMIEQKVREAKEVCQGDE-TSVEYKVAWDQVEEVSQAKADLR 101
           L E I++ ++EA+E C      S E   AWD+VEE+    +  R
Sbjct: 1   LDEHIQKAIKEAREACAEGGANSAECAAAWDEVEELQAEASHQR 44

The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571. Length = 71

>gnl|CDD|215102 PLN00204, PLN00204, CP12 gene family protein; Provisional

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 59  LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           ++E +E+ ++EA+E C  D  S E   AWD+VEE+S A +  R K
Sbjct: 57  ISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDK 101

Length = 126

>gnl|CDD|198161 smart01093, CP12, CP12 domain

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 59  LTEMIEQKVREAKEVC-QGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           + E I++ + EA+  C Q    S + + AWD+VEE+    +     
Sbjct: 1   IDEHIQKAISEARAACAQYGGDSAKCRAAWDEVEELQAEASHHPDD 46

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PLN00204	126	CP12 gene family protein; Provisional	99.82
PF02672	71	CP12: CP12 domain; InterPro: IPR003823 This entry	99.62

>PLN00204 CP12 gene family protein; Provisional

Probab=99.82  E-value=1.6e-20  Score=137.96  Aligned_cols=54  Identities=35%  Similarity=0.534  Sum_probs=48.7

Q ss_pred             ccccccCChHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225           48 KFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK  103 (104)
Q Consensus        48 k~~~~~pk~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k  103 (104)
                      |+.+  ..+.+|+++|+++|++||++|+++++|++|++|||+|||||||++|||++
T Consensus        48 ~~v~--a~~~~L~e~Ie~aI~eArevCa~g~~S~eCaaAWDeVEELqAeasHqr~~  101 (126)
T PLN00204         48 RPVR--AAPEGISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDK  101 (126)
T ss_pred             Eeee--cCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence            4444  55567999999999999999999999999999999999999999999875

>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function

Probab=99.62  E-value=5.6e-17  Score=107.98  Aligned_cols=45  Identities=38%  Similarity=0.646  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225           59 LTEMIEQKVREAKEVCQGD-ETSVEYKVAWDQVEEVSQAKADLRLK  103 (104)
Q Consensus        59 L~e~IeeaI~eAreiCa~~-~~S~ECaaAWD~VEELqAEASHqr~k  103 (104)
                      |+++|+++|++||++|+++ .+|++|++|||+||||||+++||+.+
T Consensus         1 l~e~Ie~~i~eA~~~c~~~g~~s~ec~~AWdeVEELqa~~~h~~~~   46 (71)
T PF02672_consen    1 LEEKIEKAIEEAREACAEGGANSAECRHAWDEVEELQAEASHQRQE   46 (71)
T ss_dssp             ----------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHcccc
Confidence            6899999999999999977 99999999999999999999999764

This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2lj9_A	99	Partial 3d Structure Of The C-Terminal Part Of The		6e-07
3qv1_G	82	Crystal Structure Of The Binary Complex Of Photosyn		1e-06

>pdb|2LJ9|A Chain A, Partial 3d Structure Of The C-Terminal Part Of The Free Arabidopsis Thaliana Cp12-2 In Its Oxidized Form Length = 99

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 50  KGTHMREKE--LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           +G+HM   E  +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct: 17  RGSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 72

>pdb|3QV1|G Chain G, Crystal Structure Of The Binary Complex Of Photosyntetic A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis Thaliana. Length = 82

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 51  GTHMREKE--LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           G+HM   E  +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct: 1   GSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2lj9_A	99	CP12 domain-containing protein 2; helix, protein b	8e-09
3qv1_G	82	CP12 protein; rossman fold, calvin cycle, NAD, chl	2e-08

>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana} Length = 99

 Score = 47.9 bits (113), Expect = 8e-09
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 56  EKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           E  +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct: 25  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 72

>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I* Length = 82

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 51  GTHMR--EKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
           G+HM   E  +++++E+ ++EA+E C GD  S E   AWD+VEE+S A +  R K
Sbjct: 1   GSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2lj9_A	99	CP12 domain-containing protein 2; helix, protein b	99.78
3qv1_G	82	CP12 protein; rossman fold, calvin cycle, NAD, chl	99.75

>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}

Probab=99.78  E-value=1.3e-20  Score=132.52  Aligned_cols=53  Identities=38%  Similarity=0.612  Sum_probs=0.0

Q ss_pred             cccCChHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225           51 GTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK  103 (104)
Q Consensus        51 ~~~pk~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k  103 (104)
                      ...|++.+|+++|+++|++||++|+++++|++|++|||+||||||+++|||++
T Consensus        20 ~~~p~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~   72 (99)
T 2lj9_A           20 HMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK   72 (99)
T ss_dssp             -----------------------------------------------------
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhc
Confidence            34588889999999999999999998899999999999999999999999875

>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I*

Probab=99.75  E-value=7.1e-20  Score=125.03  Aligned_cols=47  Identities=40%  Similarity=0.695  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225           57 KELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK  103 (104)
Q Consensus        57 ~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k  103 (104)
                      ..|+++|+++|++||++|+++++|++|++|||+||||||+++|||.+
T Consensus         9 ~~l~e~Ie~~I~~Ar~ic~~~~~S~eCa~AWdeVEELqaeash~~~~   55 (82)
T 3qv1_G            9 GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK   55 (82)
T ss_dssp             -----------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence            46999999999999999998899999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00