Citrus Sinensis ID: 038250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF
Secondary Structure (PSIPRED)
cccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccccccccccccccccccccccccEHHHccccEEEEccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHcHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccEcccccccccccc
Coil and Loop (DISEMBL)
milswkrlrggrgrragkkqpgvesggemelttpnhfrcpisldlmkdpvtlstgitydreNIEKWihedgnitcpvtnrvltsfepipnhTIRRMIQDWCVENrsygieriptpripvssveVFEINCNIttacksedqAGCRDLVAKIKKWTkesdrnkrcivdngAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLfplagegltylgsasSMRCMVWFLKsgdlsrrrNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKlikepicptatkASLVVVYRTItsasatekpiQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDglcssdygrgdaynnsliFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNphrarlecidsmdfkdlkrpf
Flexible Loop (DISEMBL)
milswkrlrggrgrragkkqpgvesggemelttpNHFRCPISLDLMKDPVTLSTGITYDRENIEKWihedgnitcpVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGieriptpripvssVEVFEINCNITtacksedqagcRDLVAKIKkwtkesdrnkrcivdNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLReivssdhrkvnvLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTItsasatekpiqkFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLkllnphrarlecidsmdfkdlkrpf
Low Complexity Region (SEG)
MILSWkrlrggrgrragkkqpgVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF
Disordered region (IsUnstruct)
**********************************NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID***********
Disordered Region (DISOPRED)
**LSWK*****************************HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINC**************RDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAF************SVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP*******ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN*************FKDLKR**
Disordered Region (DISEMBL)
MILSWKRLRG******************MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF
Disordered Region (DISPRO)
*IL*WKRLR********************ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYG********IPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
Q5PNY6	435	U-box domain-containing p	yes	no	0.921	0.940	0.464	1e-100
Q9C8D1	431	U-box domain-containing p	no	no	0.930	0.958	0.429	1e-92
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.842	0.909	0.347	3e-51
Q9LT79	421	U-box domain-containing p	no	no	0.835	0.881	0.324	1e-48
Q9SVC6	435	E3 ubiquitin-protein liga	no	no	0.842	0.859	0.327	1e-48
Q9FXA4	421	U-box domain-containing p	no	no	0.916	0.966	0.332	8e-46
Q9SF15	456	E3 ubiquitin-protein liga	no	no	0.887	0.864	0.288	2e-35
Q9LXE3	409	U-box domain-containing p	no	no	0.833	0.904	0.292	9e-30
Q058P4	448	U-box domain-containing p	no	no	0.831	0.823	0.284	1e-29
Q9LSA6	415	U-box domain-containing p	no	no	0.842	0.901	0.288	1e-28

>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/426 (46%), Positives = 296/426 (69%), Gaps = 17/426 (3%)

Query: 24  ESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83
           ES  E E+T P  F+CPIS+DLMKDPV +STGITYDR +IE WI+  GN TCPVTN VLT
Sbjct: 22  ESEPESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWIN-SGNKTCPVTNTVLT 80

Query: 84  SFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGC 143
           +F+ IPNHTIR+MIQ WCVE  S  I+RIPTPR+P+   EV+EI+  +++A +  D   C
Sbjct: 81  TFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKC 140

Query: 144 RDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVS-VLEEILSTLTLL 202
             ++ KIKK   ES++N++C+ +N    VL + F+ FS    DE ++ +L EILS LT +
Sbjct: 141 GVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG---DEKLTFMLNEILSLLTWM 197

Query: 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI 262
           FP+  EG++ L SA+S RC+   LKS D S R+NA  +++EI+S D  +V+      G  
Sbjct: 198 FPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENGVA 257

Query: 263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKP--IQKFVDMGLVSLLLEMLVDAQR 320
           E L KLI++ +  ++TK+SL+ +Y+ +      +KP    +F+++GLVS+ +EM+VDA+ 
Sbjct: 258 EALVKLIRDSVSSSSTKSSLIAIYQMV-----LQKPEIASEFLEIGLVSITVEMIVDAEN 312

Query: 321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380
           S+CEKAL+VLD +C +++GR +   N+L+ P++VKKI +VS+LAT  ++S++ KL K   
Sbjct: 313 SVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKT-- 370

Query: 381 REEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL-ECIDSM-DFK 438
                A  +A+++GAFQK+LL+LQVG  ++TKE  +ELLK++N     + +C+DS+ +FK
Sbjct: 371 -GNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVDSLKEFK 429

Query: 439 DLKRPF 444
            +K+PF
Sbjct: 430 YIKKPF 435

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 283/442 (64%), Gaps = 29/442 (6%)

Query: 12  RGRRAGKKQ--PGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE 69
           RG    KK+  P      E+E+T P+ F+CPIS +LMKDPV +++GITYDRENIEKW  E
Sbjct: 10  RGGSVSKKEIIPVTSCSEEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWF-E 68

Query: 70  DGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINC 129
            G  TCPVTN VLTS E IPNHTIRRMIQ WC  +   GIERIPTPR+PV+S +V EI  
Sbjct: 69  SGYQTCPVTNTVLTSLEQIPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICE 128

Query: 130 NITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENV 189
            ++ A +  D A C ++V K+ +  KES+RN++C+ +NGA  VL   F+ FS+   + N 
Sbjct: 129 RLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSE---NANA 185

Query: 190 S-VLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD 248
           S +LEE +S LT + P+  EG + L + SS   +V  L++GD    +NA  +++E++  +
Sbjct: 186 SLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----QNAAFLIKELLELN 241

Query: 249 HRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL 307
              V+ L  I G  E   K I ++  C      SL+ ++  I +   T   + +F+++ L
Sbjct: 242 VTHVHALTKINGVQEAFMKSINRDSTCVN----SLISIHHMILTNQET---VSRFLELDL 294

Query: 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEF 367
           V++ +EMLVD++ S+CEKAL+VL+ +C +  GR     N L+ P++VKKIL++S+   + 
Sbjct: 295 VNITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISE--KKD 352

Query: 368 AVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427
            VS++WK+CK+ +  E     EAL++GAF+KL+++LQVGC + TKE V+ELLK++N    
Sbjct: 353 LVSVMWKVCKSGDGSE---VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMK 409

Query: 428 RLECID-----SMDFKDLKRPF 444
               +D     S++FK +K+PF
Sbjct: 410 MNGFVDRSYSSSIEFKHVKKPF 431

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 217/412 (52%), Gaps = 38/412 (9%)

Query: 25  SGGEM--ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL 82
           SGG M  E+  P  F CPISL++MKDPV +STGITYDR++IEKW+      +CPVT + +
Sbjct: 2   SGGIMDEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDI 61

Query: 83  TSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAG 142
           T  +  PNHT+RR+IQ WC  N SYG+ERIPTPR P+   E+ ++  +  +A   E+Q  
Sbjct: 62  TDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRD--SASSHENQVK 119

Query: 143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202
           C   + ++++   E+  NKRC+   G    LA      S     EN S+ +E    L LL
Sbjct: 120 C---LKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDS-----ENGSLTDE---ALNLL 168

Query: 203 FPLAGEGLTYLGSASS------MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL 256
           + L           ++      ++ +   ++ G    R  A L+L+ I+       ++ L
Sbjct: 169 YHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTL 228

Query: 257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV 316
             E   E + +++ + I   ATKA++ +    + +     +   K V+ G++S+++E+L+
Sbjct: 229 KPEVFTE-VVQILDDRISQKATKAAMHI----LVNICPWGRNRHKAVEAGVISVIIELLM 283

Query: 317 D----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL 372
           D    ++R   E A+ VLD LC    GR +  N+     V+ KKILRVS  A++ AV +L
Sbjct: 284 DESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL 343

Query: 373 W---KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421
               + C            E LQ+G   KL L+LQV C  KTKE   ELLKL
Sbjct: 344 LSVGRFCAT-----PALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 17/388 (4%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
           ++ +  P HFRCPISL+LM+DPVT+ TG TYDR +IE W+    N TCPVT   L+ F  
Sbjct: 9   DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query: 88  IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCR-DL 146
           IPNHT+RR+IQ+WCV NRS G+ERIPTP+ P     V  +    +    +      R   
Sbjct: 69  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128

Query: 147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206
           + +++ + ++SD+N+  I  + A  +L +    FS+T   E VS    +L  L +  P  
Sbjct: 129 LRRLRGFARDSDKNRVLIAAHNATEILIKIL--FSETTSSELVSESLALLVMLPITEP-- 184

Query: 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNV---LLDIEGAIE 263
            + ++       +  +   L    +  R NA  ++ EIVS+  +  ++   + + E   E
Sbjct: 185 NQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALI-EIVSTGTKSADLKGSISNSESVFE 243

Query: 264 PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML-VDAQRSL 322
            +  L++ PI   +++ +L +  +T+ +  + +      +  G   +L++ L  D  R  
Sbjct: 244 GVLDLLRNPI---SSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCD 300

Query: 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE 382
            E+AL+ ++ LC +  G      ++L  P++VK ILRVSD ATE+A   L  LC  EER 
Sbjct: 301 TERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERW 360

Query: 383 EKTAFAEALQVGAFQKLLLLLQVGCADK 410
            +    EA   G   +LLL++Q  C ++
Sbjct: 361 RE----EAAGAGVVVQLLLMVQSECTER 384

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 229/433 (52%), Gaps = 59/433 (13%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
           + E+  P+ F CPISLD+MKDPV +STGITYDRE+IEKW+      +CPVT +V+T  + 
Sbjct: 2   DQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61

Query: 88  IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSE-DQAGCRDL 146
            PNHT+RR+IQ WC  N SYGIERIPTP+ P+   E+ ++   I  +  S  +Q  C   
Sbjct: 62  TPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKL---IKESSSSHLNQVKC--- 115

Query: 147 VAKIKKWTKESDRNKRCI----VDNGAVSVLAEAFETF---------------------- 180
           + ++++   E+  NKRC+    V     ++++ + +T+                      
Sbjct: 116 LKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLE 175

Query: 181 -----SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRR 235
                S++ +DE +SVL  + ++ T L  L    L      + ++ +   ++ G    R 
Sbjct: 176 NRFDSSRSLMDEALSVLYHLDTSETALKSL----LNNKKGTNLVKTLTKIMQRGIYESRA 231

Query: 236 NAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295
            A L+L++++        +LL+ E   E + +++ + I   AT++++ ++   IT     
Sbjct: 232 YAALLLKKLLEVADPMQIILLERELFGE-VIQILHDQISHKATRSAMQIL--VITCPWGR 288

Query: 296 EKPIQKFVDMGLVSLLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFP 351
            +   K V+ G +S+++E+L+D    ++R   E A+ VLD LC    GR +  N+     
Sbjct: 289 NR--HKAVEGGTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIA 346

Query: 352 VIVKKILRVSDLATEFAVSILW---KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCA 408
           V+ KKILRVS + +E AV +L    + C        +   E LQ+G   KL L+LQV C 
Sbjct: 347 VVSKKILRVSQITSERAVRVLLSVGRFCAT-----PSLLQEMLQLGVVAKLCLVLQVSCG 401

Query: 409 DKTKEHVSELLKL 421
           +KTKE   ELLKL
Sbjct: 402 NKTKEKAKELLKL 414

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score =  184 bits (468), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 209/424 (49%), Gaps = 17/424 (4%)

Query: 21  PGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80
           PG     ++ +  P HFRCPISLDLM DPVT+STG TYDR +I+ WI   GN TCPVT  
Sbjct: 2   PGNLEPLDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAM-GNTTCPVTRV 60

Query: 81  VLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQ 140
            L+ F  IPNHT+RR+IQ+WCV NRS G+ERIPTP+ P   + V  +    +    +   
Sbjct: 61  ALSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVS 120

Query: 141 AGCR-DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEA-FETFSKTCLDENVSVLEEILST 198
              R   + +++   ++S++N+  I  + A  +L    F     T L   +      L  
Sbjct: 121 VRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLAL-- 178

Query: 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI 258
           L LL     E        S +  M   L    +  R NA  ++ E+V +  + +++ L I
Sbjct: 179 LVLLHMTETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALI-EMVLTGAKSMDLKLII 237

Query: 259 EGA---IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315
            G+    E +  L+K PI   +++ +L +  + I +    ++     +  G   +L++ L
Sbjct: 238 SGSDSIFEGVLDLLKNPI---SSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRL 294

Query: 316 -VDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK 374
             D  R   E+ L+ ++ LC    G      ++L  P++VK ILRVSD ATE+A   L  
Sbjct: 295 AADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLA 354

Query: 375 LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDS 434
           LC  EER       EA   G   +LLLL+Q  C ++ K     LLKLL         + S
Sbjct: 355 LCTAEERCRD----EAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHS 410

Query: 435 MDFK 438
            DF 
Sbjct: 411 DDFN 414

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 214/447 (47%), Gaps = 53/447 (11%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT-SFE 86
           E E+  PN+F CPISL++MKDPVT  +GITYDR+NI KW+ +    +CPVT + L    +
Sbjct: 5   EEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVP--SCPVTKQPLPLDSD 62

Query: 87  PIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDL 146
             PNH +RR+IQ WCVEN + G+ RI TPR+P   + V E   N+      ++  G  + 
Sbjct: 63  LTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKF--GQEALGREET 120

Query: 147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDEN------VSVLEEILSTLT 200
           + K++    + + N+R + + G    + ++   F   C  E+      +  L+E L  L 
Sbjct: 121 LQKLEVLAMDGN-NRRLMCECG----VHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLH 175

Query: 201 LLFPLAGEGLTYLGSASS-MRCMVWFLKSGDLSRRRNAVLVLREIV--SSDH--RKVN-- 253
           L+   + +  T L      M  + W L   D   +   +++LR +   +S H   ++N  
Sbjct: 176 LIGIPSNDAKTILMENDRVMESLTWVLHQEDFLSKAYTIVLLRNLTEYTSSHIVERLNPE 235

Query: 254 -------VLLDIEGAIEPLFKLIKEPICPTATKASL-----------VVVYRTITSA--- 292
                   L D+  ++      ++E +  ++++ SL           +V+ + +T+A   
Sbjct: 236 IFKGIIGFLKDVVNSVNRTSPTVRETV-QSSSRPSLGKTEPSKLDHSLVIKQAVTAALMI 294

Query: 293 ----SATEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYNN 346
               S+  +     VD+G VS L+E+ +    ++ + E  L VL  LC    GR +   +
Sbjct: 295 LLETSSWSRNRSLLVDLGAVSELIELEISYTGEKRITELMLGVLSRLCCCANGRAEILAH 354

Query: 347 SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406
                V+ K++LRVS  A + A+SIL  + K     E     E + VG  +KL  +L + 
Sbjct: 355 RGGIAVVTKRLLRVSPAADDRAISILTTVSKFS--PENMVVEEMVNVGTVEKLCSVLGMD 412

Query: 407 CADKTKEHVSELLKLLNPHRARLECID 433
           C    KE   E+LK       +  CID
Sbjct: 413 CGLNLKEKAKEILKDHFDEWKKFPCID 439

E3 ubiquitin-protein ligase that acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB23.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1

 Score =  131 bits (330), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 199/400 (49%), Gaps = 30/400 (7%)

Query: 32  TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH 91
           T P  F+CPISLD+MK PV+LSTG+TYDR +I++W+ +DGN TCP T ++L + E +PN 
Sbjct: 10  TVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWL-DDGNNTCPATMQILQNKEFVPNL 68

Query: 92  TIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVF-EINCNITTACKSEDQAGCRDLVAKI 150
           T+ R+I  W     S  I R      P S      EIN  I    + E+ A      +KI
Sbjct: 69  TLHRLIDHW-----SDSINRRADSESPESDTPTRDEINAAIERF-RIENDAR-----SKI 117

Query: 151 KKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP--LAGE 208
            ++ +ESD N+  +        +     + S+   D  + ++ E +  L+++        
Sbjct: 118 LRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRR 177

Query: 209 GLTYLGSASSMRCMVWF---LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265
            L+ L   +   C+  F   +K G+   + +   VL E ++ D     ++   EG +  +
Sbjct: 178 RLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVL-EFIAVDAESKLIIAKGEGLVTEI 236

Query: 266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQ-KFVDMGLVSLLLEMLVD--AQRSL 322
            KLI      +  +A+L ++      A A+ K ++   +   LV+ L  +L D     S+
Sbjct: 237 IKLISSDSDSSLIEANLSLLI-----AIASSKRVKLALIREKLVTKLTSLLTDPTTSVSV 291

Query: 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE 382
            EK L +L+ + S   GR +  +   +   +V K+++VS  ATE AV++LW +C     +
Sbjct: 292 TEKCLKLLEAISSCKEGRSEICDGVCV-ETVVNKLMKVSTAATEHAVTVLWSVCY--LFK 348

Query: 383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422
           EK A    +++    K+LLLLQ  C+   +  +++LLK+ 
Sbjct: 349 EKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVF 388

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 191/394 (48%), Gaps = 25/394 (6%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P+ F CPISL+ M+DPVTL TG TY+R NI KW +  G++TCP T + L      PN T+
Sbjct: 65  PSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNL-GHLTCPTTMQELWDDTVTPNKTL 123

Query: 94  RRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKW 153
             +I  W   ++ Y + +  +  +   ++E+      + T  K++ QA    L +++K+ 
Sbjct: 124 HHLIYTWF--SQKYVLMKKRSEDVQGRAIEI------LGTLKKAKGQARVHAL-SELKQI 174

Query: 154 TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYL 213
                  ++ +V+ G VSV++     F+        +V  E+++ L  L  L  +  + L
Sbjct: 175 VIAHLMARKTVVEEGGVSVISSLLGPFTSH------AVGSEVVAILVSL-DLDSDSKSGL 227

Query: 214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI 273
              + +  +V  L  G    + N   ++R +V     +   L+     +  L +L+K+  
Sbjct: 228 MQPAKVSLIVDMLNDGSNETKINCARLIRGLVEEKGFRAE-LVSSHSLLVGLMRLVKDKR 286

Query: 274 CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL 333
                  +L    R +   S  ++     V +G V  L+++L        E AL VLD L
Sbjct: 287 HRNGVSPAL----RLLKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDAL 342

Query: 334 CSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV 393
           C+   GR    +++   P  V+ ++RVS+  T +A+SILW +CK    E       A++V
Sbjct: 343 CTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEE---CSPLAVEV 399

Query: 394 GAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427
           G   KLLL++Q GC    K+  +ELLKL + H +
Sbjct: 400 GLAAKLLLVIQSGCDAALKQRSAELLKLCSLHYS 433

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 214/434 (49%), Gaps = 60/434 (13%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
           E  +T P+ F+CPISLD+M+ PV+L TG+TYDR +I++W+ + GN TCP T ++L + + 
Sbjct: 7   ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQLLKTKDF 65

Query: 88  IPNHTIRRMIQDW--CVENRSYGIERIPTP----RIPVSSVEVFEINCNITTACKSEDQA 141
           +PN T++R+I  W   +  R  G   +  P     +P       E+N  +      E+  
Sbjct: 66  VPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKE----EVNVLLERLMSLEN-- 119

Query: 142 GCRDLVAKIKKWTKESDRNKRCIVDNGA-VSVLAEAFETFSKTCLD---------ENVSV 191
                + KI ++ K+SD N+  +      V +L +   T  KT ++         +++ V
Sbjct: 120 -----LMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRT-KKTKIELVIMAIRILDSIKV 173

Query: 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK 251
             E LS L     LA +G         +  ++  ++ G+L  +  +V VL + +S D + 
Sbjct: 174 DRERLSNLM----LANDG------GDCLTAILLAIQRGNLESKIESVRVL-DWISFDAKS 222

Query: 252 VNVLLDIEGAIEPLFKLIK--EPICPTATKASLVVVY-----RTITSASATEKPIQKFVD 304
             ++ + +G +  + K I   E   P+  +ASL  +      + + S     K I K  D
Sbjct: 223 KLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKD 282

Query: 305 MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR----GDAYNNSLIFPVIVKKILRV 360
           +    LL E L +   ++ EK+L +L+ L S   GR    GD  +N      +VKK+L+V
Sbjct: 283 I----LLTETLTNV--AVTEKSLKLLETLSSKREGRLEICGD--DNGRCVEGVVKKLLKV 334

Query: 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420
           S  ATE AV+ILW LC    RE+KT      +     KLL+++Q  C+   ++   +L+K
Sbjct: 335 STTATEHAVTILWCLC-YVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIK 393

Query: 421 LLNPHRARLECIDS 434
           +L  + + L   ++
Sbjct: 394 VLKFNSSALAAYET 407

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255573216	426	Spotted leaf protein, putative [Ricinus	0.907	0.946	0.684	1e-162
359473099	442	PREDICTED: U-box domain-containing prote	0.957	0.961	0.676	1e-160
118487984	441	unknown [Populus trichocarpa]	0.988	0.995	0.644	1e-158
14582200	442	immediate-early fungal elicitor protein	0.986	0.990	0.613	1e-155
30013683	445	Avr9/Cf-9 rapidly elicited protein 74 [N	0.986	0.984	0.603	1e-145
297528367	444	CMPG1a [Nicotiana benthamiana]	0.986	0.986	0.588	1e-143
297528369	444	CMPG1b [Nicotiana benthamiana]	0.986	0.986	0.588	1e-142
449449104	444	PREDICTED: U-box domain-containing prote	0.934	0.934	0.595	1e-138
449456206	442	PREDICTED: U-box domain-containing prote	0.993	0.997	0.552	1e-137
224069206	446	predicted protein [Populus trichocarpa]	0.984	0.979	0.576	1e-137

>gi|255573216|ref|XP_002527537.1| Spotted leaf protein, putative [Ricinus communis] gi|223533087|gb|EEF34846.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/418 (68%), Positives = 330/418 (78%), Gaps = 15/418 (3%)

Query: 27  GEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86
           G+MEL  PNHFRCPISLDLMKDPVTLSTGITYDR++IEKWI E GN+TCP+T +VL S E
Sbjct: 24  GDMELAIPNHFRCPISLDLMKDPVTLSTGITYDRQSIEKWI-EGGNVTCPITAQVLRSLE 82

Query: 87  PIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDL 146
           PIPNHTIR+MIQDWCV+N+S+GIERIPTPRIPVSSVE  EI   IT +C   D+ GCR+L
Sbjct: 83  PIPNHTIRKMIQDWCVDNKSFGIERIPTPRIPVSSVEALEIQSRITASCNQGDRVGCRNL 142

Query: 147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206
           VAKIK   KES+RNKRCI+ N +         +FS     EN +VLEEILS LTL+FPL 
Sbjct: 143 VAKIKTLLKESERNKRCILSNAS---------SFS-----ENAAVLEEILSCLTLMFPLD 188

Query: 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLF 266
            E   YLGS++SM C+VWFLK G LS RRNAVLVL+E+VS D RKV  L  IEG  E LF
Sbjct: 189 VEAKGYLGSSASMNCLVWFLKGGVLSGRRNAVLVLKELVSLDQRKVEALSGIEGGAEALF 248

Query: 267 KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA 326
           KLIKEPICPTATKASLV++Y    S     + I  FVDMG+VSLL+EMLVD ++S+CEKA
Sbjct: 249 KLIKEPICPTATKASLVIIYNMAMSTPTNARVISSFVDMGIVSLLMEMLVDTEKSICEKA 308

Query: 327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTA 386
           L VLDG+C SD GR  AY++SL  PV+VKKI RVS+LATEF+VSILWKLCKNE+R+E   
Sbjct: 309 LGVLDGICCSDQGREKAYDHSLTIPVLVKKIHRVSELATEFSVSILWKLCKNEKRKEGNV 368

Query: 387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF 444
             EALQVGAFQKLLLLLQVGC ++TKE  +ELLKLLNP+R RLECIDS D KDLKRPF
Sbjct: 369 LPEALQVGAFQKLLLLLQVGCGERTKEKATELLKLLNPYRERLECIDSSDLKDLKRPF 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473099|ref|XP_003631249.1| PREDICTED: U-box domain-containing protein 21-like [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/426 (67%), Positives = 344/426 (80%), Gaps = 1/426 (0%)

Query: 19  KQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVT 78
           +Q   +  G MELTTPNHFRCPISLDLMKDPVTLSTGITYDRE+IE WI E GN TCP+T
Sbjct: 18  QQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWI-EAGNRTCPIT 76

Query: 79  NRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSE 138
           N+VL S EPIPNHTIR+MIQDWCVENRS+GIERIPTPRIP+SSVEV ++      A + E
Sbjct: 77  NQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDMLSKFKMAYRRE 136

Query: 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILST 198
           D+AGCR+LVAK+K   KES+RNKRCIV NGA  VL+ AFE FS    D+ V+VLE+IL+ 
Sbjct: 137 DEAGCRELVAKMKSKGKESERNKRCIVINGAAGVLSAAFEAFSSASFDKYVAVLEDILAA 196

Query: 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI 258
           LT + PL GE  +YL SA+S+ C+VW LKSGDLS R NAV  L+E++SSD RKV  L +I
Sbjct: 197 LTWMSPLDGEAKSYLSSAASLNCLVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEI 256

Query: 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA 318
           EGA E L KL+KEPICPTATK SLVV++  ++S+ + E    +FV+MGLV LLLE+LVD+
Sbjct: 257 EGAKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKVRFVEMGLVELLLELLVDS 316

Query: 319 QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378
           ++S+CEKAL VLDG+C  + GR  AY ++L  PV+VKK+LRVSDLATEF+VSILWKL KN
Sbjct: 317 EKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKN 376

Query: 379 EEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFK 438
           E+RE+ +   EALQVGAFQKLLLLLQVGC+D+TKE  +ELLKLLN HR RLECIDSMDFK
Sbjct: 377 EKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFK 436

Query: 439 DLKRPF 444
           DLKRPF
Sbjct: 437 DLKRPF 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487984|gb|ABK95813.1| unknown [Populus trichocarpa]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/445 (64%), Positives = 357/445 (80%), Gaps = 6/445 (1%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI +W++ R    R AGK++   E+G ++E+T PNHFRCP+SLDLMKDPVT+S+GITYDR
Sbjct: 2   MISTWRKRR--EARLAGKQRLESETG-DIEVTVPNHFRCPVSLDLMKDPVTMSSGITYDR 58

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
           E+IEKWI E GN+TCP+TN+VL S +PIPNHTIR+MIQDWCV N SYGIERIPTPRIPVS
Sbjct: 59  ESIEKWI-EAGNVTCPITNKVLRSLDPIPNHTIRKMIQDWCVANSSYGIERIPTPRIPVS 117

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
           S EV EI+  I TAC+  DQAGC++LVAKIK   KES+RN+RC+V  G   VL+ AFE F
Sbjct: 118 SEEVLEIHSKIKTACRKGDQAGCQNLVAKIKALAKESERNRRCLVATGTAGVLSSAFEEF 177

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           SK   D+NV+VLEEILS L +L P   +  TYLGS +SM C+VWFLKS DLS RRNAVLV
Sbjct: 178 SKASFDDNVAVLEEILSGLAVLLP-HDKATTYLGSDASMDCVVWFLKSEDLSTRRNAVLV 236

Query: 241 LREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE-KPI 299
           L+E+V  D+RKV++LL+IEGA E LFKLIK PICP+ATKASL+++Y  + S+S T  K I
Sbjct: 237 LKELVPLDNRKVDMLLEIEGATEALFKLIKAPICPSATKASLLIIYHMVMSSSPTNAKII 296

Query: 300 QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359
            KF+D+GLVSLLLEMLVDA+RS+CEKAL VLDG+C  D GR  AYN++L  PV+V+KI R
Sbjct: 297 DKFLDLGLVSLLLEMLVDAERSICEKALGVLDGICDRDQGREKAYNHALTIPVLVRKIHR 356

Query: 360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELL 419
           VSDLA +F+VSIL+KLC NE+R       EA+Q  AF+KLL+LLQVGC ++T+E  ++LL
Sbjct: 357 VSDLAMKFSVSILFKLCMNEKRGNGGVLVEAIQRNAFEKLLVLLQVGCDERTREKATQLL 416

Query: 420 KLLNPHRARLECIDSMDFKDLKRPF 444
           KLLN +R R++CIDS+DFK+LKRPF
Sbjct: 417 KLLNVYRGRVDCIDSVDFKNLKRPF 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14582200|gb|AAK69401.1|AF274564_1 immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] gi|14582202|gb|AAK69402.1|AF274565_1 immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/445 (61%), Positives = 345/445 (77%), Gaps = 7/445 (1%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI SWK++R  R      K+ G++    ME++ PNHFRCPISLDLMKDPVTLSTGITYDR
Sbjct: 1   MISSWKKIRASRH---ANKRNGLDDLSNMEVSIPNHFRCPISLDLMKDPVTLSTGITYDR 57

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
            +IE WI E GN TCP+T ++L++ EPIPNHTIR+MIQDWCV+N SYGIERIPTPRIPVS
Sbjct: 58  HSIETWI-EAGNKTCPITKQMLSTLEPIPNHTIRKMIQDWCVDNSSYGIERIPTPRIPVS 116

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
           S +V E+   +  AC+ E+ + C++LV KIK+  KE++RNKRC V NG V VLA  FE F
Sbjct: 117 SHQVTEMLSKVVAACRREEASACQELVGKIKRLVKENERNKRCFVANGTVGVLASTFEAF 176

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           SK   D+NV+VLEEILS L+L+ PL GE   +LGS SS+ CMVWFLKSGDLS R N+VLV
Sbjct: 177 SKLSFDKNVAVLEEILSCLSLMTPLDGEAKAFLGSNSSLNCMVWFLKSGDLSARANSVLV 236

Query: 241 LREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT---EK 297
           L+ ++S+D +K+     IEG++E L K+IKEP+ PT TKASL++VY  ++++S++   +K
Sbjct: 237 LKHVLSTDQKKMEEFSMIEGSLEALVKVIKEPVSPTTTKASLLIVYYMVSTSSSSRVDDK 296

Query: 298 PIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI 357
            I +F+DMGL+  LLEMLVD  +S+CEKAL VLDGLC ++ GR  AY N+L  PV+VKKI
Sbjct: 297 IIARFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLTNEGREKAYANALTMPVLVKKI 356

Query: 358 LRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417
           LRVSDLATEF+VSI+WKL KN++ E+     EAL+VGAFQKLLLLLQ GC +K K+  +E
Sbjct: 357 LRVSDLATEFSVSIVWKLSKNDKSEDGGVIVEALRVGAFQKLLLLLQFGCNEKIKDKATE 416

Query: 418 LLKLLNPHRARLECIDSMDFKDLKR 442
           LLKLLN HR +LECIDSMDFK+LKR
Sbjct: 417 LLKLLNLHRDKLECIDSMDFKNLKR 441

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30013683|gb|AAP03884.1| Avr9/Cf-9 rapidly elicited protein 74 [Nicotiana tabacum]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/451 (60%), Positives = 330/451 (73%), Gaps = 13/451 (2%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI +W++ R  +  R  K+   VE    MEL  P HF CPISLDLMKDPVTLSTGITYDR
Sbjct: 1   MISTWRKRRTEK--RVAKRGL-VEDITNMELVIPRHFTCPISLDLMKDPVTLSTGITYDR 57

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
           ENIEKWI E GN TCP+TN+ L + EPIPNH+IR+MIQ WCVEN+ +GIERIPTPRIPV+
Sbjct: 58  ENIEKWI-EAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVENKDHGIERIPTPRIPVT 116

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
           S EV E+   I+      D   C +LV+K+KK   ES+RNKRC V NG   VL+ AF  F
Sbjct: 117 SSEVVELLAKISKEI--HDLELCGELVSKVKKLVNESERNKRCFVTNGTAQVLSAAFVAF 174

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           S+     N S  E ILSTLT + PL GE    LGS SS+RCMVWFLK+G LS RRNAV V
Sbjct: 175 SEEINMRNASTGEVILSTLTTILPLDGESKLNLGSISSLRCMVWFLKNGSLSSRRNAVFV 234

Query: 241 LREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS-----A 294
           L++I+  + + KV +LL +EGA+E L KL+KEPICPT TKASL+ +Y  + S+      A
Sbjct: 235 LKDILKMEEQDKVEILLGMEGALEGLVKLVKEPICPTTTKASLLAIYHMVNSSHLSSSFA 294

Query: 295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV 354
            +K   +FVD+GLV LL+EMLVD ++S+CEKAL VLDG+CSS  GR  AY+ +L  PV+V
Sbjct: 295 NKKAQSRFVDLGLVELLVEMLVDCEKSICEKALGVLDGICSSIEGRKRAYSYALTVPVLV 354

Query: 355 KKILRVSDLATEFAVSILWKLCKNEEREE-KTAFAEALQVGAFQKLLLLLQVGCADKTKE 413
           KK+LRVSDLATEF+VSILWK+ KNE+RE       EAL++GAFQKLLLLLQVGC++ TKE
Sbjct: 355 KKLLRVSDLATEFSVSILWKIGKNEKRENGGDVLVEALKLGAFQKLLLLLQVGCSETTKE 414

Query: 414 HVSELLKLLNPHRARLECIDSMDFKDLKRPF 444
             SELLKLLN HR R EC+DS+DFK LKRPF
Sbjct: 415 KASELLKLLNVHRDRAECVDSLDFKSLKRPF 445

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528367|gb|ADI46213.1| CMPG1a [Nicotiana benthamiana]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/450 (58%), Positives = 328/450 (72%), Gaps = 12/450 (2%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI +W++ R    RR  K+   +E    MEL  P +F CPISLDLMKDPVTLSTGITYDR
Sbjct: 1   MISTWRKRR--TERRVAKRGL-MEDITSMELVIPRNFTCPISLDLMKDPVTLSTGITYDR 57

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
           ENIEKWI E GN TCP+TN+ L + EPIPNH+IR+MIQ WCV N+ +GIERIPTPRIPV+
Sbjct: 58  ENIEKWI-EAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVANKDHGIERIPTPRIPVT 116

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
           S EV E+   I+      D   C++LV+K+KK   ES+RNKR  V NG   VL+ AF  F
Sbjct: 117 SSEVVELLAKISKGM--HDSELCKELVSKVKKLVNESERNKRSFVTNGIAHVLSAAFVAF 174

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           SK    +N S  E ILSTLT + PL GE  + LGS SS+RCMVWFL +G LS RRNAV +
Sbjct: 175 SKEINMKNASTGEVILSTLTTILPLDGESKSILGSISSLRCMVWFLNNGSLSGRRNAVFL 234

Query: 241 LREIVS-SDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTI----TSASAT 295
           L++I+   +H KV +LL + GA+E L KL++EPICPT TKASL+ +Y  +    +S+ A 
Sbjct: 235 LKDILKMEEHDKVEILLGMGGALEGLVKLVQEPICPTTTKASLLAIYHMVNPSNSSSFAN 294

Query: 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK 355
           +K   +F DMGLV LL+EMLVD+++S+CEKAL VLDG+CSS  GR   YN +L  PV+VK
Sbjct: 295 KKAQSRFADMGLVELLVEMLVDSEKSICEKALGVLDGICSSVEGRKGVYNYALTVPVLVK 354

Query: 356 KILRVSDLATEFAVSILWKLCKNEEREE-KTAFAEALQVGAFQKLLLLLQVGCADKTKEH 414
           K+LRVSDLATEF+VSI+WK+ KNE RE       EAL++GAFQKLLLLLQVGC++ TKE 
Sbjct: 355 KLLRVSDLATEFSVSIIWKIGKNENRENGGDVLVEALKLGAFQKLLLLLQVGCSETTKEK 414

Query: 415 VSELLKLLNPHRARLECIDSMDFKDLKRPF 444
            SELLKL+N HR R EC+DS+DFK LKRPF
Sbjct: 415 ASELLKLMNVHRDRQECVDSLDFKSLKRPF 444

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528369|gb|ADI46214.1| CMPG1b [Nicotiana benthamiana]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/450 (58%), Positives = 329/450 (73%), Gaps = 12/450 (2%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI +W++ R  R  R  K+   +E    MEL  P +F CPISLDLMKDPVTLSTGITYDR
Sbjct: 1   MISTWRKRRTER--RVAKRGL-MEDITSMELVIPRNFTCPISLDLMKDPVTLSTGITYDR 57

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
           ENIEKWI E GN TCP+TN+ L + EPIPNH+IR+MIQ WCVEN+ +GIERI TPRIPV+
Sbjct: 58  ENIEKWI-EAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVENKDHGIERIQTPRIPVT 116

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
           S EV E+   I+ A    D   CR+LV+K+KK   ES+RNKRC V NG   VL+ AF  F
Sbjct: 117 SSEVVELLAKISKAM--HDSELCRELVSKVKKLVNESERNKRCFVTNGTAHVLSAAFVAF 174

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           S+    +N S  E ILSTLT + PL GE  + LGS SS+ CMVWFL +G LS RRNAV +
Sbjct: 175 SEEINMKNASTGELILSTLTTILPLDGESKSNLGSISSLGCMVWFLNNGSLSSRRNAVFL 234

Query: 241 LREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTI----TSASAT 295
           L++I+  + + K+ +LL ++GA+E L KL+KEPICPT TKASL+ +Y  +    +S+ A 
Sbjct: 235 LKDILKMEEQDKIEILLGMDGALEGLVKLVKEPICPTTTKASLLAIYHMVNPSHSSSFAN 294

Query: 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK 355
           +K   +F D+GLV LL+EMLVD ++S+CEKAL VLDG+C S  GR  AY+ +L  PV+VK
Sbjct: 295 KKAQSRFADVGLVELLVEMLVDCEKSICEKALGVLDGICRSIEGRKRAYSYALTVPVLVK 354

Query: 356 KILRVSDLATEFAVSILWKLCKNEEREE-KTAFAEALQVGAFQKLLLLLQVGCADKTKEH 414
           K+LRVSDLATEF+VSI+WK+ KNE RE       EAL++GAFQKLLLLLQVGC+D TKE 
Sbjct: 355 KLLRVSDLATEFSVSIIWKIGKNENRENGGDVLVEALKLGAFQKLLLLLQVGCSDTTKEK 414

Query: 415 VSELLKLLNPHRARLECIDSMDFKDLKRPF 444
            SELLKLLN HR R EC+DS+DFK LKRPF
Sbjct: 415 ASELLKLLNVHRDRAECVDSLDFKSLKRPF 444

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449104|ref|XP_004142305.1| PREDICTED: U-box domain-containing protein 21-like [Cucumis sativus] gi|449523075|ref|XP_004168550.1| PREDICTED: U-box domain-containing protein 21-like [Cucumis sativus]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 317/423 (74%), Gaps = 8/423 (1%)

Query: 29  MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI 88
           +ELT P HFRCPISLDLMKDPVTLSTGITYDR +IE WI E GN TCP TN+ L + + I
Sbjct: 23  IELTIPTHFRCPISLDLMKDPVTLSTGITYDRASIETWI-EGGNFTCPFTNQPLQTIDSI 81

Query: 89  PNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVA 148
           PNH IR+MIQDWCVENR+YGIERIPTPR+P S  +V EI   +  A +  D  GC+ +V 
Sbjct: 82  PNHNIRKMIQDWCVENRAYGIERIPTPRVPASPAQVREILEKMAAAARRGDCDGCKSMVE 141

Query: 149 KIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK-TCLDENVSVLEEILSTLTLLFPLAG 207
           KIKK  KES+RNK+CI+ NG  + L+  FE FS     ++ + +LEEILS +T+ FPL  
Sbjct: 142 KIKKLGKESERNKKCIIANGTGNTLSSIFEAFSNPETFEKRIEILEEILSAMTVAFPLQE 201

Query: 208 EGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267
           E + +L S +S++ +VWFLK GD+S RRN+VLVL+EI+SS   KV+ L +I+GA+E L K
Sbjct: 202 ESIKHLKSETSLQSLVWFLKGGDISGRRNSVLVLKEIISSYPEKVDELGEIQGALEGLIK 261

Query: 268 LIKEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDAQRSLCE 324
           LIK+PIC ++ KASL + Y  I S S++   E+  ++ + MGLVSLLLE LVDA+RS+CE
Sbjct: 262 LIKDPICSSSRKASLFITYHVIASTSSSSNRERFTKELLQMGLVSLLLETLVDAERSVCE 321

Query: 325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEK 384
           +AL   DG+C +  GR +AY ++L  PVIVKKILRVSDLATE +V I+WKL K+E +EE+
Sbjct: 322 RALGAFDGICETKQGREEAYAHALTMPVIVKKILRVSDLATELSVCIVWKLVKHESKEEE 381

Query: 385 TAF--AEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP-HRARLECIDSMDFKDLK 441
                 EALQVGAFQKLLLLLQVGC++ TKE  +ELLKLLN  HR RLECIDS+DFKDLK
Sbjct: 382 DGGIKVEALQVGAFQKLLLLLQVGCSEWTKEKATELLKLLNNLHRDRLECIDSLDFKDLK 441

Query: 442 RPF 444
           R F
Sbjct: 442 RTF 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456206|ref|XP_004145841.1| PREDICTED: U-box domain-containing protein 21-like [Cucumis sativus]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/445 (55%), Positives = 328/445 (73%), Gaps = 4/445 (0%)

Query: 1   MILSWKRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDR 60
           MI SW++ + G   +  K+ PGV+SG E+ +  P+H+ CPISLDLMKDPV LSTGITYDR
Sbjct: 1   MIFSWRKNKLGFLTKLKKELPGVDSGSEIAI--PSHYMCPISLDLMKDPVILSTGITYDR 58

Query: 61  ENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVS 120
           E+IEKWI + GN +CPVT + LT F+ IPNH +RR+IQDWCV NRSYGIERIPTPRIPVS
Sbjct: 59  ESIEKWI-DGGNFSCPVTKQDLTVFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVS 117

Query: 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF 180
             EV EI   I+ A +  D   C +L+ KI+ W KES+RN+RCIV+ G   VLA +FE F
Sbjct: 118 PYEVKEICSRISIATQRSDSKRCSELMGKIRNWAKESERNRRCIVNGGTGDVLAASFEHF 177

Query: 181 SKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240
           +   ++++V +LEEIL  LT ++P+A EGL+ LGSA S++C+V FL   DLS +++A+ V
Sbjct: 178 AGVSIEKHVGLLEEILLVLTCVYPVAIEGLSKLGSADSLKCLVSFLVGKDLSPKQSAIFV 237

Query: 241 LREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ 300
           L+E++++D R VN L  IEG  E L  +I++P+CP+ATK+SL  ++  I  +   EK   
Sbjct: 238 LKELLAADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKSSLTAIFYMILPSDIGEKMAL 297

Query: 301 KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360
           KFV++GLVS LLE LVDA++SLCEKAL +LDG+C    GR   YNN+L  P++VKKILRV
Sbjct: 298 KFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYNNALTIPLLVKKILRV 357

Query: 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420
           S+LATE+++SIL KLCK+ E+ E     EA Q+GAFQK+L+LLQVGC    K+ V+E+LK
Sbjct: 358 SELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLK 417

Query: 421 LLNPHRARLECID-SMDFKDLKRPF 444
           LLN ++ RL+CID SM FK LK+ F
Sbjct: 418 LLNLYKDRLDCIDSSMHFKYLKKSF 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069206|ref|XP_002302926.1| predicted protein [Populus trichocarpa] gi|222844652|gb|EEE82199.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/453 (57%), Positives = 328/453 (72%), Gaps = 16/453 (3%)

Query: 1   MILSWKRLRGGRGRRAGKKQ--PGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITY 58
           MILSW      R RR  KK   P  E   +ME++ P HF CPISLDLMKDPVTLSTGITY
Sbjct: 1   MILSW------RSRRNSKKNKIPSQEINSDMEISNPRHFCCPISLDLMKDPVTLSTGITY 54

Query: 59  DRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIP 118
           DRE+IEKWI E+GN+TCPVTN+VL S++ IPNH+IR+MIQDWCVENRSYG+ERIPTPR+P
Sbjct: 55  DRESIEKWI-EEGNLTCPVTNQVLASYDQIPNHSIRKMIQDWCVENRSYGVERIPTPRVP 113

Query: 119 VSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFE 178
           V+  +V E    +  A +  +Q  CR+LV KIK W KES+RNK+CIV+NGA  VL+  FE
Sbjct: 114 VTPYDVSETCKRVNDATRRGEQKKCRELVRKIKNWGKESERNKKCIVENGAGCVLSACFE 173

Query: 179 TFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAV 238
           +F+   + ++  +L EILS L  +FPL  EG + LGS  S+ C+VWFLKSGDLS R+NA 
Sbjct: 174 SFASVSVGKDEDLLGEILSVLVWMFPLGEEGQSKLGSVRSLNCLVWFLKSGDLSARQNAA 233

Query: 239 LVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298
           LVL+ +++ D + V+ L+ IEG    L KLIKEPICPTATKASL+ ++   + +S  EK 
Sbjct: 234 LVLKNLLALDQKHVSALVGIEGVFAALVKLIKEPICPTATKASLMAIFYMTSPSSLNEKM 293

Query: 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL 358
           I  FV+MGLVS+++E+LVD  +S+CEKAL VLD +C    GR  AY N+LI  V++KKIL
Sbjct: 294 IPMFVEMGLVSVIVEILVDGDKSICEKALGVLDHICDCKEGREKAYENALIVAVLIKKIL 353

Query: 359 RVSDLATEFAVSILWKLCKN------EEREEKTAFAEALQVGAFQKLLLLLQVGCADKTK 412
           +VS LA+E +VSILWKL KN      ++  E     EALQVGAFQKLL+LLQVGC + TK
Sbjct: 354 KVSGLASELSVSILWKLFKNSQYRPEDDDAEGGVVVEALQVGAFQKLLVLLQVGCGESTK 413

Query: 413 EHVSELLKLLNPHRARLECIDSM-DFKDLKRPF 444
           E + ELLKLLN  R RL+C DS  DFK LKR +
Sbjct: 414 EKLKELLKLLNLCRVRLDCFDSTADFKYLKRSY 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2169861	435	AT5G37490 [Arabidopsis thalian	0.921	0.940	0.464	9.4e-98
TAIR|locus:2013850	431	CMPG1 ""CYS, MET, PRO, and GLY	0.900	0.928	0.399	3.1e-74
TAIR|locus:2075457	379	AT3G02840 [Arabidopsis thalian	0.747	0.875	0.459	5.3e-72
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.333	0.340	0.421	5.4e-55
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.858	0.927	0.350	4.4e-52
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.858	0.904	0.333	9.2e-52
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.898	0.947	0.336	4e-51
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.828	0.899	0.297	4.4e-36
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.894	0.945	0.282	6.5e-35
TAIR|locus:2093974	415	PUB29 "plant U-box 29" [Arabid	0.871	0.932	0.285	7.4e-34

TAIR|locus:2169861 AT5G37490 [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 198/426 (46%), Positives = 296/426 (69%)

Query:    24 ESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83
             ES  E E+T P  F+CPIS+DLMKDPV +STGITYDR +IE WI+  GN TCPVTN VLT
Sbjct:    22 ESEPESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINS-GNKTCPVTNTVLT 80

Query:    84 SFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGC 143
             +F+ IPNHTIR+MIQ WCVE  S  I+RIPTPR+P+   EV+EI+  +++A +  D   C
Sbjct:    81 TFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKC 140

Query:   144 RDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVS-VLEEILSTLTLL 202
               ++ KIKK   ES++N++C+ +N    VL + F+ FS    DE ++ +L EILS LT +
Sbjct:   141 GVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG---DEKLTFMLNEILSLLTWM 197

Query:   203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI 262
             FP+  EG++ L SA+S RC+   LKS D S R+NA  +++EI+S D  +V+      G  
Sbjct:   198 FPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENGVA 257

Query:   263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKP--IQKFVDMGLVSLLLEMLVDAQR 320
             E L KLI++ +  ++TK+SL+ +Y+ +      +KP    +F+++GLVS+ +EM+VDA+ 
Sbjct:   258 EALVKLIRDSVSSSSTKSSLIAIYQMVL-----QKPEIASEFLEIGLVSITVEMIVDAEN 312

Query:   321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380
             S+CEKAL+VLD +C +++GR +   N+L+ P++VKKI +VS+LAT  ++S++ KL K   
Sbjct:   313 SVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGN 372

Query:   381 REEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL-ECIDSM-DFK 438
                  A  +A+++GAFQK+LL+LQVG  ++TKE  +ELLK++N     + +C+DS+ +FK
Sbjct:   373 T---VAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVDSLKEFK 429

Query:   439 DLKRPF 444
              +K+PF
Sbjct:   430 YIKKPF 435

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2013850 CMPG1 ""CYS, MET, PRO, and GLY protein 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 168/421 (39%), Positives = 256/421 (60%)

Query:    28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             E+E+T P+ F+CPIS +LMKDPV +++GITYDRENIEKW  E G  TCPVTN VLTS E 
Sbjct:    28 EVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWF-ESGYQTCPVTNTVLTSLEQ 86

Query:    88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLV 147
             IPNHTIRRMIQ WC  +   GIERIPTPR+PV+S +V EI   ++ A +  D A C ++V
Sbjct:    87 IPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMV 146

Query:   148 AKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVL-EEILSTLTLLFPLA 206
              K+ +  KES+RN++C+ +NGA  VL   F+ FS+     N S+L EE +S LT + P+ 
Sbjct:   147 TKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENA---NASLLLEETVSVLTWMLPIG 203

Query:   207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLF 266
              EG + L + SS   +V  L++GD    +NA  +++E++  +   V+ L  I G  E   
Sbjct:   204 LEGQSKLTTTSSFNRLVELLRNGD----QNAAFLIKELLELNVTHVHALTKINGVQEAFM 259

Query:   267 KLI-KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK 325
             K I ++  C      SL+ ++  I +   T   + +F+++ LV++ +EMLVD++ S+CEK
Sbjct:   260 KSINRDSTCVN----SLISIHHMILTNQET---VSRFLELDLVNITVEMLVDSENSVCEK 312

Query:   326 ALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREE-K 384
             AL+VL+ +C +  GR     N L+ P++VKKIL++S+   +  VS++WK+CK+ +  E +
Sbjct:   313 ALTVLNVICETKEGREKVRRNKLVIPILVKKILKISE--KKDLVSVMWKVCKSGDGSEVE 370

Query:   385 TAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR-ARLECIDSMDFKDLKRP 443
              A            L +    G  +K  E +  + K++  +         S++FK +K+P
Sbjct:   371 EALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVDRSYSSSIEFKHVKKP 430

Query:   444 F 444
             F
Sbjct:   431 F 431

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2075457 AT3G02840 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 158/344 (45%), Positives = 228/344 (66%)

Query:   109 IERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNG 168
             IERI +PR+ ++  +  EI+  +  A   E+ A C ++V+KIK   +  D NK+C+V NG
Sbjct:    40 IERIQSPRVLLTPRDAVEISRRLQNAAAREEYAECLEIVSKIKNLGRGGDTNKKCLVQNG 99

Query:   169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL-AGEGLTYLGSASSMRCMVWFLK 227
             +V  L+  FE F+    D ++ +LEEIL  L+   PL   EG   +GS +S+ C+V FL 
Sbjct:   100 SVLALSSCFERFA-AARDGHMRLLEEILFVLSSWLPLNRSEGFNKMGSTASLNCLVRFLN 158

Query:   228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYR 287
               D   R+NA   +RE+++ D R V  L D+EGA E L K+I++ +  ++TKASL+V+YR
Sbjct:   159 GKDAKTRQNAAFCIREVIAVDKRYVYALTDVEGACEGLVKIIRDSVSTSSTKASLMVIYR 218

Query:   288 TITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAYNN 346
              I+S    +K  +KFV +GLV L+ EM+V+ A++S+CE++L VL+  C ++ G+ D   N
Sbjct:   219 AISS---NDKITEKFVKLGLVELITEMMVNNAEKSVCERSLVVLNATCDNEQGKEDVLRN 275

Query:   347 SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREE--KTAFAEALQVGAFQKLLLLLQ 404
             +LI P++VKKILRVSDLAT+ +VSILWKL KN++  E       EALQVGAF+KLL+LLQ
Sbjct:   276 ALIVPLLVKKILRVSDLATQCSVSILWKLWKNKKDGECDDRLLVEALQVGAFEKLLVLLQ 335

Query:   405 VGCADKTKEHVSELLKLLNPHRARLE---CIDS-MDFKDLKRPF 444
             VGC DKTKE  SELL+ LN  R  +E   C+DS M  K++K+ F
Sbjct:   336 VGCEDKTKEKASELLRNLNRCRNEIEKTNCVDSSMHLKNVKKSF 379

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0051707 "response to other organism" evidence=ISS

GO:0010193 "response to ozone" evidence=IEP

GO:0005634 "nucleus" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             + E+  P+ F CPISLD+MKDPV +STGITYDRE+IEKW+      +CPVT +V+T  + 
Sbjct:     2 DQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61

Query:    88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSE-DQAGCRDL 146
              PNHT+RR+IQ WC  N SYGIERIPTP+ P+   E+ ++   I  +  S  +Q  C   
Sbjct:    62 TPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKL---IKESSSSHLNQVKC--- 115

Query:   147 VAKIKKWTKESDRNKRCI----VDNGAVSVLAEAFETFS 181
             + ++++   E+  NKRC+    V     ++++ + +T++
Sbjct:   116 LKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYN 154

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 142/405 (35%), Positives = 220/405 (54%)

Query:    25 SGGEM--ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL 82
             SGG M  E+  P  F CPISL++MKDPV +STGITYDR++IEKW+      +CPVT + +
Sbjct:     2 SGGIMDEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDI 61

Query:    83 TSFEPIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAG 142
             T  +  PNHT+RR+IQ WC  N SYG+ERIPTPR P+   E+ ++  +  +A   E+Q  
Sbjct:    62 TDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRD--SASSHENQVK 119

Query:   143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--TCLDENVSVLEEILSTLT 200
             C   + ++++   E+  NKRC+   G    LA      S+  +  DE +++L  + ++ T
Sbjct:   120 C---LKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSET 176

Query:   201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG 260
             +L  L    L      + ++ +   ++ G    R  A L+L+ I+       ++ L  E 
Sbjct:   177 VLKNL----LNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEV 232

Query:   261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--- 317
               E + +++ + I   ATKA++ +    + +     +   K V+ G++S+++E+L+D   
Sbjct:   233 FTE-VVQILDDRISQKATKAAMHI----LVNICPWGRNRHKAVEAGVISVIIELLMDESF 287

Query:   318 -AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC 376
              ++R   E A+ VLD LC    GR +  N+     V+ KKILRVS  A++ AV +L  L 
Sbjct:   288 TSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL--LS 345

Query:   377 KNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421
                         E LQ+G   KL L+LQV C  KTKE   ELLKL
Sbjct:   346 VGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 134/402 (33%), Positives = 216/402 (53%)

Query:    28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             ++ +  P HFRCPISL+LM+DPVT+ TG TYDR +IE W+    N TCPVT   L+ F  
Sbjct:     9 DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query:    88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDL- 146
             IPNHT+RR+IQ+WCV NRS G+ERIPTP+ P     V  +    +    +      R   
Sbjct:    69 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128

Query:   147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206
             + +++ + ++SD+N+  I  + A  +L +    FS+T   E VS   E L+ L +L P+ 
Sbjct:   129 LRRLRGFARDSDKNRVLIAAHNATEILIKIL--FSETTSSELVS---ESLALLVML-PIT 182

Query:   207 --GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNV---LLDIEGA 261
                + ++       +  +   L    +  R NA  ++ EIVS+  +  ++   + + E  
Sbjct:   183 EPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALI-EIVSTGTKSADLKGSISNSESV 241

Query:   262 IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQR 320
              E +  L++ PI   +++ +L +  +T+ +  + +      +  G   +L++ L  D  R
Sbjct:   242 FEGVLDLLRNPI---SSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDR 298

Query:   321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380
                E+AL+ ++ LC +  G      ++L  P++VK ILRVSD ATE+A   L  LC  EE
Sbjct:   299 CDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEE 358

Query:   381 REEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422
             R  +    EA   G   +LLL++Q  C ++ K+   +LLKLL
Sbjct:   359 RWRE----EAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLL 396

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 140/416 (33%), Positives = 210/416 (50%)

Query:    28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             ++ +  P HFRCPISLDLM DPVT+STG TYDR +I+ WI   GN TCPVT   L+ F  
Sbjct:     9 DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAM-GNTTCPVTRVALSDFTL 67

Query:    88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDL- 146
             IPNHT+RR+IQ+WCV NRS G+ERIPTP+ P   + V  +    +    +      R   
Sbjct:    68 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAA 127

Query:   147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEA-FETFSKTCLDENVSVLEEILSTLTLLFPL 205
             + +++   ++S++N+  I  + A  +L    F     T L   +  + E L+ L LL   
Sbjct:   128 IRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSEL--VSESLALLVLLHMT 185

Query:   206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA---I 262
               E        S +  M   L    +  R NA  ++ E+V +  + +++ L I G+    
Sbjct:   186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALI-EMVLTGAKSMDLKLIISGSDSIF 244

Query:   263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRS 321
             E +  L+K PI   +++ +L +  + I +    ++     +  G   +L++ L  D  R 
Sbjct:   245 EGVLDLLKNPI---SSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRC 301

Query:   322 LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEER 381
               E+ L+ ++ LC    G      ++L  P++VK ILRVSD ATE+A   L  LC  EER
Sbjct:   302 DTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEER 361

Query:   382 EEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDF 437
                    EA   G   +LLLL+Q  C ++ K     LLKLL         + S DF
Sbjct:   362 CRD----EAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDF 413

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 119/400 (29%), Positives = 204/400 (51%)

Query:    32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH 91
             T P  F+CPISLD+MK PV+LSTG+TYDR +I++W+ +DGN TCP T ++L + E +PN 
Sbjct:    10 TVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWL-DDGNNTCPATMQILQNKEFVPNL 68

Query:    92 TIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVF-EINCNITTACKSEDQAGCRDLVAKI 150
             T+ R+I  W     S  I R      P S      EIN  I    + E+ A      +KI
Sbjct:    69 TLHRLIDHW-----SDSINRRADSESPESDTPTRDEINAAIERF-RIENDAR-----SKI 117

Query:   151 KKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEG 209
              ++ +ESD N+  +   +  V++L +     S+   D  + ++ E +  L+++     + 
Sbjct:   118 LRFARESDENREFLAGKDDFVAMLVDLISD-SRNFSDSQLLLVGEAVKILSMIRRKIFDR 176

Query:   210 --LTYLGSASSMRCMVWF---LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEP 264
               L+ L   +   C+  F   +K G+   + +   VL E ++ D     ++   EG +  
Sbjct:   177 RRLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVL-EFIAVDAESKLIIAKGEGLVTE 235

Query:   265 LFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ-KFVDMGLVSLLLEMLVDAQRSLC 323
             + KLI        + +SL+    ++  A A+ K ++   +   LV+ L  +L D   S+ 
Sbjct:   236 IIKLISSD-----SDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVS 290

Query:   324 --EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEER 381
               EK L +L+ + S   GR +  +   +   +V K+++VS  ATE AV++LW +C   + 
Sbjct:   291 VTEKCLKLLEAISSCKEGRSEICDGVCV-ETVVNKLMKVSTAATEHAVTVLWSVCYLFK- 348

Query:   382 EEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421
              EK A    +++    K+LLLLQ  C+   +  +++LLK+
Sbjct:   349 -EKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKV 387

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 118/417 (28%), Positives = 211/417 (50%)

Query:    31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90
             +T P  FRCPISLD+MK PV+L TG+TYDR +I++W+ + GN TCP T ++L + + IPN
Sbjct:     8 ITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQILQNKDFIPN 66

Query:    91 HTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKI 150
              T++R+I+ W    R     R       +++    EI   I      +++   R++++KI
Sbjct:    67 RTLQRLIEIWSDSVR----RRTCVESAELAAPTRDEIADAIDRVKIEKEERDDREVLSKI 122

Query:   151 KKWTKESDRNKRCIVD-NGAVSVLAEAFET--FSKTCLDENVSVLE--EILSTLTLLFP- 204
              ++ +ESD N+  +   +  V +L +      F  T   +++ V E  +ILST+      
Sbjct:   123 VRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSD 182

Query:   205 -LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIE 263
                   L        +  +V+  K+G++  + +   +L E ++ D     ++ + +G I 
Sbjct:   183 RRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLL-EFIAVDAESKLLIAERDGLIT 241

Query:   264 PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLL-EMLVDAQRSL 322
              L K I +    +  ++SL  +   I+S    +  + +   +G V+ LL +       S+
Sbjct:   242 ELMKSISKDSDLSLIESSLSCLI-AISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVSV 300

Query:   323 CEKALSVLDGLCSSDYGRGDAYN-NSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEER 381
              EK L +L+ L S+  GR +    +      +VKK+++VS  ATE AV++LW +     +
Sbjct:   301 TEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSV-SYLFK 359

Query:   382 EEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFK 438
             E+K A      V    K+LLLLQ  C+   +  +++LLK+   + +R  C+ + D K
Sbjct:   360 EDK-ALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVN-SR-SCLSAYDTK 413

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2093974 PUB29 "plant U-box 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 120/421 (28%), Positives = 210/421 (49%)

Query:    28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             E  +T P+ F+CPISLD+M+ PV+L TG+TYDR +I++W+ + GN TCP T ++L + + 
Sbjct:     7 ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQLLKTKDF 65

Query:    88 IPNHTIRRMIQDWC--VENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRD 145
             +PN T++R+I  W   +  R  G   +  P          E+N  +      E+      
Sbjct:    66 VPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLEN------ 119

Query:   146 LVAKIKKWTKESDRNKRCIVDNGA-VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204
              + KI ++ K+SD N+  +      V +L +   T  KT + E V +   IL ++ +   
Sbjct:   120 -LMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRT-KKTKI-ELVIMAIRILDSIKVDRE 176

Query:   205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEP 264
                  +        +  ++  ++ G+L  +  +V VL + +S D +   ++ + +G +  
Sbjct:   177 RLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVL-DWISFDAKSKLMIAERDGVLTE 235

Query:   265 LFKLIK--EPICPTATKASL---VVVYRT--ITSASATEKPIQKFVDMGLVSLLLEMLVD 317
             + K I   E   P+  +ASL   + + ++  + S     K I K  D+    LL E L +
Sbjct:   236 MMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDI----LLTETLTN 291

Query:   318 AQRSLCEKALSVLDGLCSSDYGR----GDAYNNSLIFPVIVKKILRVSDLATEFAVSILW 373
                ++ EK+L +L+ L S   GR    GD  +N      +VKK+L+VS  ATE AV+ILW
Sbjct:   292 V--AVTEKSLKLLETLSSKREGRLEICGD--DNGRCVEGVVKKLLKVSTTATEHAVTILW 347

Query:   374 KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID 433
              LC    RE+KT      +     KLL+++Q  C+   ++   +L+K+L  + + L   +
Sbjct:   348 CLCY-VFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSSALAAYE 406

Query:   434 S 434
             +
Sbjct:   407 T 407

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5PNY6	PUB21_ARATH	6, ., 3, ., 2, ., -	0.4647	0.9211	0.9402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030628001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (442 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	444
smart00504	63	smart00504, Ubox, Modified RING finger domain	3e-26
pfam04564	73	pfam04564, U-box, U-box domain	3e-20
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	4e-07
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	2e-04

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  100 bits (250), Expect = 3e-26
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 36  HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRR 95
            F CPISL++MKDPV L +G TY+R  IEKW+   G  T PVT + LT  + IPN  ++ 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHG--TDPVTGQPLTHEDLIPNLALKS 58

Query: 96  MIQDW 100
            IQ+W
Sbjct: 59  AIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 83.9 bits (208), Expect = 3e-20
 Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P+ F  PI+L+LMKDPV L +GITYDR  IE+ +      T P T   LT  + IPN  +
Sbjct: 2   PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDP-TDPFTREPLTHDQLIPNLEL 60

Query: 94  RRMIQDWCVENR 105
           +  I  W  ENR
Sbjct: 61  KEKIDAWLEENR 72

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 33 TPNHFRCPISLDLMKD----PVTLSTGITYDRENIEKWIHEDGNITCPV 77
            + F CPIS ++M D    PV L  G  Y R+ +EK     G   CP 
Sbjct: 7  FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 37 FRCPISLDLMKDPVTLST--GITYDRENIEKWIHEDGNITCPV 77
            CP++L   ++PVT S      ++++ I   +  +  + CPV
Sbjct: 12 LTCPLTLQPFEEPVT-SKKCNHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.85
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.78
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.69
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.65
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.56
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.43
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.35
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.3
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.28
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.27
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.24
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.22
PRK09687	280	putative lyase; Provisional	99.2
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.19
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.14
PRK09687	280	putative lyase; Provisional	99.13
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.07
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.01
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.01
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.97
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.95
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.95
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.92
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.91
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.9
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.89
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.87
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.86
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.86
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.86
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.85
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.83
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.8
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.79
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.76
PHA02929	238	N1R/p28-like protein; Provisional	98.69
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.68
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.61
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.58
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.55
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.53
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.51
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.5
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.48
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.48
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.45
PHA02926	242	zinc finger-like protein; Provisional	98.45
KOG2660	331	consensus Locus-specific chromosome binding protei	98.42
PF14634	44	zf-RING_5: zinc-RING finger domain	98.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.41
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.39
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.36
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.35
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.35
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.33
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.27
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.26
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.25
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.21
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.19
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.18
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.17
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.09
PF05536	543	Neurochondrin: Neurochondrin	98.08
TIGR02270	410	conserved hypothetical protein. Members are found	98.08
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.07
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.06
PTZ00429	746	beta-adaptin; Provisional	98.0
PF05536	543	Neurochondrin: Neurochondrin	97.99
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.98
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.91
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.89
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.85
PTZ00429	746	beta-adaptin; Provisional	97.85
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.83
COG5152	259	Uncharacterized conserved protein, contains RING a	97.81
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.81
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.79
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.79
TIGR02270	410	conserved hypothetical protein. Members are found	97.78
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.76
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.75
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.74
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.72
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.66
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.63
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.6
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.57
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.57
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.56
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.55
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.55
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.53
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.49
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.46
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.45
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.41
COG5369	743	Uncharacterized conserved protein [Function unknow	97.35
COG5369	743	Uncharacterized conserved protein [Function unknow	97.33
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.32
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.29
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.28
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.24
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.15
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.14
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.1
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.08
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.06
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.05
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.01
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.0
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.0
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.99
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.98
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.93
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.93
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.91
KOG0567	289	consensus HEAT repeat-containing protein [General	96.8
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.8
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.79
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.78
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.76
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.75
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.7
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.69
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.68
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.66
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.64
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.61
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.6
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.58
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.56
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	96.42
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.39
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.38
KOG3036	293	consensus Protein involved in cell differentiation	96.37
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.33
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.31
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.31
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.27
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.26
PF04641	260	Rtf2: Rtf2 RING-finger	96.25
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	96.13
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.09
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.02
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.98
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.96
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.93
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.9
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.89
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.75
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.73
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.65
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.64
KOG0289	506	consensus mRNA splicing factor [General function p	95.63
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.62
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.55
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.51
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.46
KOG3036	293	consensus Protein involved in cell differentiation	95.45
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.43
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	95.43
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.42
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.41
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.39
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.39
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.21
PF05004	309	IFRD: Interferon-related developmental regulator (	95.18
KOG2979	262	consensus Protein involved in DNA repair [General	95.17
KOG3113	293	consensus Uncharacterized conserved protein [Funct	95.17
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.16
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.13
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.12
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.11
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.07
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.03
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.03
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.01
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	94.95
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.92
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	94.89
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.87
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	94.84
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.83
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.78
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.67
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.65
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.59
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.44
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.41
PF05004	309	IFRD: Interferon-related developmental regulator (	94.4
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.27
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.23
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.2
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.13
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	94.11
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.05
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.0
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.8
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.75
PRK14707	2710	hypothetical protein; Provisional	93.61
COG5219	1525	Uncharacterized conserved protein, contains RING Z	93.33
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.31
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.3
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.22
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.18
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.17
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.1
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.99
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.98
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.92
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.91
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.89
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.55
KOG1824	1233	consensus TATA-binding protein-interacting protein	92.38
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	92.28
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	92.18
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.04
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.99
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	91.96
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.83
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.67
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	91.54
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.51
PRK14707	2710	hypothetical protein; Provisional	91.48
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.44
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	91.11
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.03
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.02
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.74
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.68
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	90.61
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.58
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	90.45
COG5109	396	Uncharacterized conserved protein, contains RING Z	90.42
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	90.24
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.22
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	90.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.11
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.65
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.6
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.47
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	89.45
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.21
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	88.83
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	88.72
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	88.26
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	88.08
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	87.92
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.38
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.18
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.14
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	86.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.74
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	86.45
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	86.4
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.35
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	85.99
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	85.89
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	85.79
KOG2025	892	consensus Chromosome condensation complex Condensi	85.77
KOG2956	516	consensus CLIP-associating protein [General functi	85.55
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	85.42
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.26
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.1
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.98
KOG4739	233	consensus Uncharacterized protein involved in syna	84.24
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	83.97
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	83.94
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	83.89
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	83.87
PHA03096	284	p28-like protein; Provisional	83.79
KOG2933	334	consensus Uncharacterized conserved protein [Funct	83.72
KOG3002	299	consensus Zn finger protein [General function pred	83.71
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	83.65
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.64
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.5
KOG1940	276	consensus Zn-finger protein [General function pred	82.7
COG5098	1128	Chromosome condensation complex Condensin, subunit	82.18
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	82.1
PHA02825	162	LAP/PHD finger-like protein; Provisional	82.0
PHA02862	156	5L protein; Provisional	81.62
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	81.54
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	81.49
KOG2062	929	consensus 26S proteasome regulatory complex, subun	80.94
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	80.91
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	80.78
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	80.76
KOG4718	235	consensus Non-SMC (structural maintenance of chrom	80.55
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	80.48
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	80.38
KOG2956	516	consensus CLIP-associating protein [General functi	80.29

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=274.47  Aligned_cols=287  Identities=13%  Similarity=0.096  Sum_probs=245.6

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILST  198 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~  198 (444)
                      +...+..+++.|.+..  .+.+.+..|+..|+.+++.++++|..+++ .|+||.|+.+|.+   +    +..+++.|+.+
T Consensus        11 ~~~~v~~Lve~L~s~~--ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s---g----~~~vk~nAaaa   81 (2102)
T PLN03200         11 TLASVAQCIEQLRAKS--SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS---G----TLGAKVNAAAV   81 (2102)
T ss_pred             hHHHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC---C----CHHHHHHHHHH
Confidence            3567888999998653  15688999999999999999999999996 8999999999953   2    58899999999


Q ss_pred             HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--hhhHHHhhcccccHHHHHHHhcCCC--C
Q 038250          199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD--HRKVNVLLDIEGAIEPLFKLIKEPI--C  274 (444)
Q Consensus       199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~--~~~~~~i~~~~g~i~~Lv~ll~~~~--~  274 (444)
                      |. +++.+++++..|+..|+||+|+.+|++++.+.|+.|+++|++|+..+  +.++..|+...|+||+|+.+++++.  +
T Consensus        82 L~-nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d  160 (2102)
T PLN03200         82 LG-VLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD  160 (2102)
T ss_pred             HH-HHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence            99 89999999999999999999999999999999999999999996554  5566566567899999999999872  2


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhhHHHHhcCCCChHH
Q 038250          275 PTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYGRGDAYNNSLIFPV  352 (444)
Q Consensus       275 ~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~  352 (444)
                      ..+++.++.+|+||+.+.+    ++ ..++++|+|+.|+++|.++++.+++.|+++|.+++.+ ++.+..+ +++|+||.
T Consensus       161 ~~L~~~Av~AL~nLs~~~e----n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aV-IeaGaVP~  235 (2102)
T PLN03200        161 KVVEGLLTGALRNLCGSTD----GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKV-LDAGAVKQ  235 (2102)
T ss_pred             HHHHHHHHHHHHHHhcCcc----chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHH-HHCCCHHH
Confidence            2356778899999999987    66 4568999999999999999999999999999988865 5677777 89999999


Q ss_pred             HHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCC--------ChHHHHHHHHHHHHHH
Q 038250          353 IVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGC--------ADKTKEHVSELLKLLN  423 (444)
Q Consensus       353 Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~--------~~~~k~~a~~ll~~l~  423 (444)
                      |+++|.++ +..+++.|+++|.+||.+    +.+.+..+++.|+++.|++++....        +...++.|.+.|.+++
T Consensus       236 LV~LL~sg~~~~VRE~AA~AL~nLAs~----s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIc  311 (2102)
T PLN03200        236 LLKLLGQGNEVSVRAEAAGALEALSSQ----SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC  311 (2102)
T ss_pred             HHHHHccCCChHHHHHHHHHHHHHhcC----CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHh
Confidence            99999765 458899999999999994    5778888889999999999998541        2346899999998887


Q ss_pred             hh
Q 038250          424 PH  425 (444)
Q Consensus       424 ~~  425 (444)
                      +.
T Consensus       312 gg  313 (2102)
T PLN03200        312 GG  313 (2102)
T ss_pred             CC
Confidence            63

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=6.3e-28  Score=268.48  Aligned_cols=281  Identities=19%  Similarity=0.170  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.|++.|.+.    +...+..|++.|+.++..+++++..++++|+||+|+++|.+.       +..++++|+++|. |
T Consensus       447 gIp~LV~LL~s~----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-------~~~iqeeAawAL~-N  514 (2102)
T PLN03200        447 GVQLLISLLGLS----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-------SQKAKEDSATVLW-N  514 (2102)
T ss_pred             cHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHH-H
Confidence            467777777765    788999999999999998888999999999999999999532       5889999999999 6


Q ss_pred             cCCChh-hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------h--------------
Q 038250          203 FPLAGE-GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----------------K--------------  251 (444)
Q Consensus       203 l~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----------------~--------------  251 (444)
                      ++.+++ ++..+.++|+|++|+++|++++.+.++.|+++|.+|+...+.                .              
T Consensus       515 La~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl  594 (2102)
T PLN03200        515 LCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSV  594 (2102)
T ss_pred             HhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Confidence            665554 455666899999999999999999999999999999522110                0              


Q ss_pred             ------HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250          252 ------VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK  325 (444)
Q Consensus       252 ------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~  325 (444)
                            ........|+|+.|+++++++ ++..++.|+++|.+++.+..   .++..++..|+|++|+.+|.+++.++++.
T Consensus       595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~---d~~~avv~agaIpPLV~LLss~~~~v~ke  670 (2102)
T PLN03200        595 ASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQ---DLCESLATDEIINPCIKLLTNNTEAVATQ  670 (2102)
T ss_pred             cchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCh---HHHHHHHHcCCHHHHHHHHhcCChHHHHH
Confidence                  111112468999999999999 89999999999999998875   57888999999999999999999999999


Q ss_pred             HHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250          326 ALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL  403 (444)
Q Consensus       326 a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll  403 (444)
                      ++++|.+|+.+.  +++..+ ++.|+|++|+++|...+..+.+.|+.+|.+|+..     .+...++.++|+|++|+++|
T Consensus       671 AA~AL~nL~~~~~~~q~~~~-v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~-----~e~~~ei~~~~~I~~Lv~lL  744 (2102)
T PLN03200        671 SARALAALSRSIKENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-----PEVAAEALAEDIILPLTRVL  744 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHH-HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----chHHHHHHhcCcHHHHHHHH
Confidence            999999999533  333445 8899999999999888999999999999999995     56778888899999999999


Q ss_pred             hcCCChHHHHHHHHHHHHHHhhc
Q 038250          404 QVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       404 ~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ++| +++.|+.|+++|..+.++.
T Consensus       745 r~G-~~~~k~~Aa~AL~~L~~~~  766 (2102)
T PLN03200        745 REG-TLEGKRNAARALAQLLKHF  766 (2102)
T ss_pred             HhC-ChHHHHHHHHHHHHHHhCC
Confidence            999 9999999999665555443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.1e-28  Score=237.61  Aligned_cols=283  Identities=14%  Similarity=0.164  Sum_probs=246.8

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.++..|...   .++..+.+|+|+|.+++..+.+.-..++++|++|.++.+|.+.       +..+++.|+++|.+
T Consensus       109 G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgN  178 (514)
T KOG0166|consen  109 GVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGN  178 (514)
T ss_pred             CcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhc
Confidence            5577888888755   3688999999999999999999999999999999999999643       58899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      +...++..|..+.+.|++++|+.++...+. ....+++|+|.||+.+....-..- ....++|.|+.++.+. ++++...
T Consensus       179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~-~v~~iLp~L~~ll~~~-D~~Vl~D  256 (514)
T KOG0166|consen  179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD-VVAPILPALLRLLHST-DEEVLTD  256 (514)
T ss_pred             cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHHHHHHhcC-CHHHHHH
Confidence            555566789999999999999999987754 788899999999987653222212 2257899999999998 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      |+|||++|+.+..   +....++++|+++.|+++|...+..++-.|+.++.|++.+++.+.+.+.+.|++|.|..++.+.
T Consensus       257 a~WAlsyLsdg~n---e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s  333 (514)
T KOG0166|consen  257 ACWALSYLTDGSN---EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS  333 (514)
T ss_pred             HHHHHHHHhcCCh---HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence            9999999997764   5788889999999999999999999999999999999999999999999999999999998854


Q ss_pred             -ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          361 -SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       361 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                       .+..++.|+|++.|++.    |+.+.++.++.+|.+|.|+.+|+.+ .-++|+.|+|++.++..
T Consensus       334 ~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  334 PKESIKKEACWTISNITA----GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS  393 (514)
T ss_pred             cchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence             55688999999999999    6788999999999999999999999 88999999997776643

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.1e-27  Score=229.16  Aligned_cols=280  Identities=15%  Similarity=0.113  Sum_probs=240.9

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..+..+.+    ++.+.+.++..+++.+..... .....++..|.||.+|.+|...  .    ++.++.+|+++|..+.+
T Consensus        70 ~~~~~~~S----~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~--~----~~~lq~eAAWaLTnIAs  139 (514)
T KOG0166|consen   70 LMLAALYS----DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD--D----NPTLQFEAAWALTNIAS  139 (514)
T ss_pred             HHHHHHhC----CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC--C----ChhHHHHHHHHHHHHhc
Confidence            34444444    488889999999998775433 3455667779999999999531  2    58899999999998888


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      ++.+....++++|++|.++++|.+.+..++++|+|+|+|++...+..|..+ ...|++++|+.++.........+++.|+
T Consensus       140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v-l~~g~l~pLl~~l~~~~~~~~lRn~tW~  218 (514)
T KOG0166|consen  140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV-LSCGALDPLLRLLNKSDKLSMLRNATWT  218 (514)
T ss_pred             CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH-HhhcchHHHHHHhccccchHHHHHHHHH
Confidence            888889999999999999999999999999999999999988888999988 6789999999999988434799999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA  364 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  364 (444)
                      |.|||.+..  + ....-.-..++|.|..+|.+.|+++...|+|+|++|+.++..+.++++++|++|.||++|...+..+
T Consensus       219 LsNlcrgk~--P-~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v  295 (514)
T KOG0166|consen  219 LSNLCRGKN--P-SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV  295 (514)
T ss_pred             HHHHHcCCC--C-CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence            999999974  1 2222233679999999999999999999999999999888888888899999999999999989999


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +-.|++++.|++.    |++...+.++..|+++.|..+|.....+.+|+.|.|++.++.
T Consensus       296 ~~PaLRaiGNIvt----G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt  350 (514)
T KOG0166|consen  296 VTPALRAIGNIVT----GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT  350 (514)
T ss_pred             ccHHHhhccceee----ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence            9999999999999    678888889999999999999996657789999999777764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.1e-27  Score=219.10  Aligned_cols=279  Identities=16%  Similarity=0.184  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.+.+ |..+   .|...+++|..+|.++... .+||+.++.+|++|.||.++++.       |.++|..++.++. 
T Consensus       167 GaL~pltr-Laks---kdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttais-  233 (550)
T KOG4224|consen  167 GALEPLTR-LAKS---KDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAIS-  233 (550)
T ss_pred             cchhhhHh-hccc---chhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhh-
Confidence            34444555 4443   4888999999999999854 67999999999999999999643       7899999999999 


Q ss_pred             hcCCChhhhhhcccCC--cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          202 LFPLAGEGLTYLGSAS--SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      ++..+..+|+.+++++  .+|.||++++++++.+|.+|..+|++| +.+.++...| .+.|.+|.+|++|+++ .-....
T Consensus       234 nIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-asdt~Yq~ei-v~ag~lP~lv~Llqs~-~~plil  310 (550)
T KOG4224|consen  234 NIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL-ASDTEYQREI-VEAGSLPLLVELLQSP-MGPLIL  310 (550)
T ss_pred             hhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh-cccchhhhHH-HhcCCchHHHHHHhCc-chhHHH
Confidence            8999999999999887  999999999999999999999999999 4566777777 5679999999999988 455667


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      ....+++|++.+.-    |-..|+++|.+.+||++|+.+ +++++-+|..+|++|+...+....++.++|+||.+..++.
T Consensus       311 asVaCIrnisihpl----Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l  386 (550)
T KOG4224|consen  311 ASVACIRNISIHPL----NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL  386 (550)
T ss_pred             HHHHHHhhcccccC----cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence            78889999999987    999999999999999999977 4559999999999999866555555599999999999999


Q ss_pred             hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      .+.-.+++...+++..|+..     +..+....+.|.++.|+..+.+. +.+++-+|++.|-.|+...
T Consensus       387 D~pvsvqseisac~a~Lal~-----d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  387 DGPVSVQSEISACIAQLALN-----DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             cCChhHHHHHHHHHHHHHhc-----cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhh
Confidence            98888998888888898884     44556666999999999999998 9999999999887777643

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.2e-27  Score=216.47  Aligned_cols=275  Identities=18%  Similarity=0.196  Sum_probs=237.8

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..+.+.    ..+.+..|+..|.+|+.. +.||..+...|++.+|.++-++       +|..+|..++.+|. ++.
T Consensus       129 ~~Li~qmmtd----~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks-------kdirvqrnatgaLl-nmT  195 (550)
T KOG4224|consen  129 DLLILQMMTD----GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS-------KDIRVQRNATGALL-NMT  195 (550)
T ss_pred             HHHHHHhcCC----CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc-------chhhHHHHHHHHHH-Hhh
Confidence            3445444443    557889999999999988 6699999999999999995532       26779999999999 899


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccc--cHHHHHHHhcCCCChHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG--AIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g--~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ...+||..++.+|++|.||++|++++..+|..++.+|.++ ..+..+|+.+ .+.|  .+|.||++++++ ++.++-.|.
T Consensus       196 hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~~Rk~L-aqaep~lv~~Lv~Lmd~~-s~kvkcqA~  272 (550)
T KOG4224|consen  196 HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRRARKIL-AQAEPKLVPALVDLMDDG-SDKVKCQAG  272 (550)
T ss_pred             hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHHHHHHH-HhcccchHHHHHHHHhCC-ChHHHHHHH
Confidence            9999999999999999999999999999999999999999 6778888888 4467  999999999999 899999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-C
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-S  361 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~  361 (444)
                      -+|+||+.+.+    .+..++++|++|.++++|+++.....-..+..+.|++-++-+-.-+ .++|.+.+||.+|.-+ +
T Consensus       273 lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~dn  347 (550)
T KOG4224|consen  273 LALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAGDN  347 (550)
T ss_pred             HHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcCCc
Confidence            99999999987    9999999999999999999888888888999999999987766666 9999999999999875 6


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..|-+|..+|++|+..    ++..+..+.++|+|++|.+++..+ +-.++..-.+.+..++=.
T Consensus       348 EeiqchAvstLrnLAas----se~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~  406 (550)
T KOG4224|consen  348 EEIQCHAVSTLRNLAAS----SEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN  406 (550)
T ss_pred             hhhhhhHHHHHHHHhhh----hhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc
Confidence            67999999999999984    467788888999999999999999 555555555555555533

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.95  E-value=1e-26  Score=212.80  Aligned_cols=292  Identities=15%  Similarity=0.147  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHH-hccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKW-TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l-~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +++.+...|.+.    |.+.+..|....+.+ +++.....+.++++|+||.+|++++...      ..-.+-+|.++|.+
T Consensus        72 elp~lt~~l~Sd----Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q------~~mlqfEAaWalTN  141 (526)
T COG5064          72 ELPQLTQQLFSD----DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ------RDMLQFEAAWALTN  141 (526)
T ss_pred             hhHHHHHHHhhh----HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc------hhHHHHHHHHHHhh
Confidence            456666666665    889999999999875 4555567889999999999999996431      34567799999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKA  280 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~  280 (444)
                      +.+........++++|++|.++++|.+++.+++++|+|+|+|++..++..|..+ -..|++.+|+.++.+.. +....++
T Consensus       142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v-L~~galeplL~ll~ss~~~ismlRn  220 (526)
T COG5064         142 IASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV-LQCGALEPLLGLLLSSAIHISMLRN  220 (526)
T ss_pred             hccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH-HhcCchHHHHHHHHhccchHHHHHH
Confidence            555555666677899999999999999999999999999999987778888888 67899999999987552 2466777


Q ss_pred             HHHHHHHHhcCCCC---------------------------------------CCchhHHHHhcCcHHHHHHHhhccccc
Q 038250          281 SLVVVYRTITSASA---------------------------------------TEKPIQKFVDMGLVSLLLEMLVDAQRS  321 (444)
Q Consensus       281 a~~aL~~L~~~~~~---------------------------------------~~~~~~~i~~~g~v~~Lv~lL~~~~~~  321 (444)
                      +.|+|.|||.+..-                                       ..+....+++.|..+.|+++|.+.+..
T Consensus       221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~  300 (526)
T COG5064         221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK  300 (526)
T ss_pred             hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc
Confidence            77777777766421                                       014567788999999999999999999


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250          322 LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL  401 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~  401 (444)
                      ++..|+..+.|+...++.+.+++.+.|+++.+-.+|.+..+.+++.|+|++.|+..    |+.+.++.+++++.+|+|+.
T Consensus       301 iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPpLi~  376 (526)
T COG5064         301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPPLIH  376 (526)
T ss_pred             ccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchHHHH
Confidence            99999999999999999999999999999999999888778899999999999999    67889999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhhccCCC
Q 038250          402 LLQVGCADKTKEHVSELLKLLNPHRARLE  430 (444)
Q Consensus       402 ll~~~~~~~~k~~a~~ll~~l~~~~~~~~  430 (444)
                      +|.+. .-++|+.|-|++.....+..+.|
T Consensus       377 lls~a-e~k~kKEACWAisNatsgg~~~P  404 (526)
T COG5064         377 LLSSA-EYKIKKEACWAISNATSGGLNRP  404 (526)
T ss_pred             HHHHH-HHHHHHHHHHHHHhhhccccCCc
Confidence            99998 77777777775555544444444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=7.1e-23  Score=187.78  Aligned_cols=286  Identities=12%  Similarity=0.113  Sum_probs=239.1

Q ss_pred             CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250          118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS  197 (444)
Q Consensus       118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~  197 (444)
                      .++.+.++.++..|+++    +.+++.+|+|+|.+++.+++..|..+.++|++.+|+.+|.+.     ..+..+.+.+.+
T Consensus       153 Vvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss-----~~~ismlRn~TW  223 (526)
T COG5064         153 VVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS-----AIHISMLRNATW  223 (526)
T ss_pred             EEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc-----cchHHHHHHhHH
Confidence            34567889999999887    678999999999999999999999999999999999999643     124678999999


Q ss_pred             HHHhhcCCCh---hhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCC
Q 038250          198 TLTLLFPLAG---EGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPIC  274 (444)
Q Consensus       198 ~L~~~l~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  274 (444)
                      +|. +++...   .+-..|  ..++|.|.+++.+.++++...|+|+|.+|+....+....+ ...|..+.||++|.++ +
T Consensus       224 tLS-NlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av-ld~g~~~RLvElLs~~-s  298 (526)
T COG5064         224 TLS-NLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV-LDVGIPGRLVELLSHE-S  298 (526)
T ss_pred             HHH-HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH-HhcCCcHHHHHHhcCc-c
Confidence            999 554322   111122  4579999999999999999999999999954444555556 5579999999999998 7


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250          275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV  354 (444)
Q Consensus       275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  354 (444)
                      ..++..|++.+.|+..+++   ..-+.+++.|+++++..+|++..+.+++.|+|+|+|+......+.+.+.++..+|+|+
T Consensus       299 a~iqtPalR~vGNIVTG~D---~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi  375 (526)
T COG5064         299 AKIQTPALRSVGNIVTGSD---DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLI  375 (526)
T ss_pred             ccccCHHHHhhcCeeecCc---cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHH
Confidence            8889999999999999986   3555678999999999999999889999999999999988877777779999999999


Q ss_pred             HHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          355 KKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       355 ~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ++|....-..++.|+|++.|...+.-. .++.++-.++.|++.+|..+|.-. +.++-+.+...++.+
T Consensus       376 ~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~eni  441 (526)
T COG5064         376 HLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIENI  441 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHHHH
Confidence            999888888999999999999876543 367788888999999999999887 666777776654444

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.85  E-value=8.8e-21  Score=192.20  Aligned_cols=304  Identities=14%  Similarity=0.088  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      ++++.+..|.+.    ++..+..|...|..+|..+.+.|..+.+.|+|+.||.+|++.       ..+++..|+++|+++
T Consensus       234 ~lpe~i~mL~~q----~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNL  302 (717)
T KOG1048|consen  234 TLPEVISMLMSQ----DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNL  302 (717)
T ss_pred             ccHHHHHHHhcc----ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhh
Confidence            567888998876    788999999999999999999999999999999999999643       588999999999944


Q ss_pred             cCCCh--hhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC------
Q 038250          203 FPLAG--EGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI------  273 (444)
Q Consensus       203 l~~~~--~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~------  273 (444)
                      +-...  +|+..|.+.++|+.++++|+. ++.++++..+.+|+|| +..|..+..| . ..++..|..-+-.+-      
T Consensus       303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL-SS~D~lK~~i-i-~~al~tLt~~vI~P~Sgw~~~  379 (717)
T KOG1048|consen  303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL-SSNDALKMLI-I-TSALSTLTDNVIIPHSGWEEE  379 (717)
T ss_pred             hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc-cchhHHHHHH-H-HHHHHHHHHhhcccccccCCC
Confidence            43333  589999999999999999987 6999999999999999 5668888888 3 477888877654220      


Q ss_pred             -------ChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhc------cccchHHHHHHHHHHhcCChh-
Q 038250          274 -------CPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDY-  338 (444)
Q Consensus       274 -------~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~-  338 (444)
                             +.++..++.++|+|++...+   +.++++-+ .|.|+.|+..+..      .+...+|+|+.+|.||+..-+ 
T Consensus       380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~  456 (717)
T KOG1048|consen  380 PAPRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEA  456 (717)
T ss_pred             CcccccccceeeehhhhhhccccchhH---HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhh
Confidence                   25688999999999998554   47888876 6999999999872      377889999999999987443 


Q ss_pred             -------------------------------hHHHH---------------------hcCCCChHHHHHHHhh-cChhHH
Q 038250          339 -------------------------------GRGDA---------------------YNNSLIFPVIVKKILR-VSDLAT  365 (444)
Q Consensus       339 -------------------------------~~~~i---------------------~~~~g~i~~Lv~ll~~-~~~~~~  365 (444)
                                                     -++++                     ..+.-+|.....+|.. .++...
T Consensus       457 Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl  536 (717)
T KOG1048|consen  457 EVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL  536 (717)
T ss_pred             hcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence                                           00010                     0111245555555654 367788


Q ss_pred             HHHHHHHHHHccccccchHHHHHHH-HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCcccccCCCCCC
Q 038250          366 EFAVSILWKLCKNEEREEKTAFAEA-LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF  444 (444)
Q Consensus       366 ~~a~~~L~~L~~~~~~~~~~~~~~~-~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~~~~~~~~l~~~~  444 (444)
                      |.++++|.||+...+.+.......+ .++.++++|+++|+.+ ++.+.+.++.+|++++...+|++.|+.|.+++|++.|
T Consensus       537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~L  615 (717)
T KOG1048|consen  537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCL  615 (717)
T ss_pred             HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhC
Confidence            9999999999998887655556666 4899999999999999 9999999999999999999999999999999987653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.80  E-value=1.3e-17  Score=173.03  Aligned_cols=255  Identities=15%  Similarity=0.181  Sum_probs=213.3

Q ss_pred             hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH
Q 038250          141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR  220 (444)
Q Consensus       141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~  220 (444)
                      +..+.++..|.+++.+ +.+...|.+.|+|+.|+++|++.       +.++...+++.|. .++...+||..+++.|+|+
T Consensus       264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLk-kLSi~~ENK~~m~~~giV~  334 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLK-KLSIFKENKDEMAESGIVE  334 (708)
T ss_pred             HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHcCCHH
Confidence            3456677778888854 67889999999999999999642       5789999999999 8999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250          221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ  300 (444)
Q Consensus       221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  300 (444)
                      .|++++.+++.+.+..+.++|+|| |.++++|..| ...|+||.|+.+|.++   ..+..++.+|++||.+++    ++.
T Consensus       335 kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~~R~~m-V~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~----~r~  405 (708)
T PF05804_consen  335 KLLKLLPSENEDLVNVALRLLFNL-SFDPELRSQM-VSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE----ARS  405 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHh-CcCHHHHHHH-HHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh----hHH
Confidence            999999999999999999999999 7899999999 6689999999999866   456679999999999886    899


Q ss_pred             HHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcccc
Q 038250          301 KFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNE  379 (444)
Q Consensus       301 ~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  379 (444)
                      .+...+++|.|+++|-. +++.+...+++++.||+.+..+...+ .+.|+++.|++...+..+   .....++.|++.+.
T Consensus       406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm-~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~  481 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLM-CEGNGLQSLMKRALKTRD---PLLLKLIRNISQHD  481 (708)
T ss_pred             HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHH-HhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcC
Confidence            99999999999998865 46667778899999999988888777 678999999998766443   23457899999985


Q ss_pred             ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          380 EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       380 ~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      ++    .....  .+.|..|+.++..+.++...-.+..+|+++.
T Consensus       482 ~~----~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  482 GP----LKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             ch----HHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            32    22222  4689999999888767777777777777775

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=3.4e-17  Score=150.48  Aligned_cols=283  Identities=14%  Similarity=0.169  Sum_probs=229.0

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      .+.....+++.+|-.+...    +..+.++-+...++.+|....     ++.++....++.+...+-.++.||+.+++.+
T Consensus       119 ~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~-----~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~  189 (461)
T KOG4199|consen  119 PNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKV-----ESEEVTLLTLQWLQKACIMHEVNRQLFMELK  189 (461)
T ss_pred             CchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            4667788888888888754    345788888999999995432     2577888888888877888999999999999


Q ss_pred             cHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcch---------hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHH
Q 038250          218 SMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDH---------RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYR  287 (444)
Q Consensus       218 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~---------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  287 (444)
                      +++.+.+.|.. +...+...++++++.|...++         .+...| ...|++..|++.++-+.+|.....++.+|..
T Consensus       190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~i-a~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~  268 (461)
T KOG4199|consen  190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTI-AKEGILTALTEALQAGIDPDSLVSLSTTLKA  268 (461)
T ss_pred             HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHH-HHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence            99999977754 455677889999999955444         455666 3468999999999988789999999999999


Q ss_pred             HhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-cc---chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--cC
Q 038250          288 TITSASATEKPIQKFVDMGLVSLLLEMLVDA-QR---SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--VS  361 (444)
Q Consensus       288 L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~---~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--~~  361 (444)
                      |+..++    .++.+++.|+++.|++++.+. +.   .+.+.++.+|+.|+++++.+..+ ++.|+.+.++.++..  ++
T Consensus       269 lAVr~E----~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I-V~~gg~~~ii~l~~~h~~~  343 (461)
T KOG4199|consen  269 LAVRDE----ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI-VEKGGLDKIITLALRHSDD  343 (461)
T ss_pred             HHHHHH----HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH-HHhcChHHHHHHHHHcCCC
Confidence            999987    999999999999999999863 32   35688999999999999999999 899999999999876  47


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCC-hHHHHHHHHHHHHH-HhhccCCCCCCcccccC
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCA-DKTKEHVSELLKLL-NPHRARLECIDSMDFKD  439 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~-~~~k~~a~~ll~~l-~~~~~~~~~~~~~~~~~  439 (444)
                      +.+.+.++.++.-||..+    ++.-+.+++.|+-...++.|+..+- ..++++|.+++|++ .+.++++.-+.+.+.++
T Consensus       344 p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~  419 (461)
T KOG4199|consen  344 PLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK  419 (461)
T ss_pred             hHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence            888899999999999964    5577888899999999999998743 45777777755555 55566665554444433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.76  E-value=2e-16  Score=164.33  Aligned_cols=218  Identities=17%  Similarity=0.169  Sum_probs=187.3

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL  268 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l  268 (444)
                      ..+...+..+|. |++.+..+...+.+.|+++.|+.+|.+++.++...++.+|.+| |...+|+..|+ ..|+|++|+++
T Consensus       263 eqLlrv~~~lLl-NLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~-~~giV~kL~kL  339 (708)
T PF05804_consen  263 EQLLRVAFYLLL-NLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMA-ESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHH-HHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHH-HcCCHHHHHHH
Confidence            446667777888 9999999999999999999999999999999999999999999 78899999994 57999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250          269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL  348 (444)
Q Consensus       269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  348 (444)
                      +.++ +...+..++++|.||+.+.+    ++..|++.|+||.|+.+|.++  ..+..++.+|++|+..++.+..+ ...+
T Consensus       340 l~s~-~~~l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f-~~Td  411 (708)
T PF05804_consen  340 LPSE-NEDLVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMF-AYTD  411 (708)
T ss_pred             hcCC-CHHHHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHH-hhcc
Confidence            9988 78999999999999999987    999999999999999999754  45677999999999999998888 7889


Q ss_pred             ChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          349 IFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       349 ~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ++|.+++++.++ ++.++..+++++.||+..     .+..+.+++.|+++.|++..-...++    ....++|+++.|.
T Consensus       412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-----~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~  481 (708)
T PF05804_consen  412 CIPQLMQMLLENSEEEVQLELIALLINLALN-----KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD  481 (708)
T ss_pred             hHHHHHHHHHhCCCccccHHHHHHHHHHhcC-----HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence            999999998775 555666788899999984     67788888999999999865544232    2334777777665

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=1e-14  Score=134.30  Aligned_cols=280  Identities=10%  Similarity=0.129  Sum_probs=218.6

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ..-+++.|....  ++.+.....+..++.-|-.++.||+.+.+.|+.+.+.+.|.  .++    ...+.+++.++++.++
T Consensus       147 ~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~--~~g----k~~~VRel~~a~r~l~  218 (461)
T KOG4199|consen  147 MAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLN--REG----KTRTVRELYDAIRALL  218 (461)
T ss_pred             HHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHc--ccC----ccHHHHHHHHHHHHhc
Confidence            344556554432  36677888889999999888999999999999999998884  234    2357777888888444


Q ss_pred             CCChhhh----------hhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250          204 PLAGEGL----------TYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP  272 (444)
Q Consensus       204 ~~~~~~~----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~  272 (444)
                       .+++.|          ..|+..|++..|+..|..+ ++.+...++.+|..| ...++.++.| .+.|++..|++++.+.
T Consensus       219 -~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l-AVr~E~C~~I-~e~GGl~tl~~~i~d~  295 (461)
T KOG4199|consen  219 -TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL-AVRDEICKSI-AESGGLDTLLRCIDDS  295 (461)
T ss_pred             -CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH-HHHHHHHHHH-HHccCHHHHHHHHhhh
Confidence             444333          4677788999999999876 788889999999999 5778899999 5579999999999875


Q ss_pred             CC---hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh--ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250          273 IC---PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV--DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS  347 (444)
Q Consensus       273 ~~---~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  347 (444)
                      ..   .+..+.++.+|+.|+.+++    ++..||+.|+.+.++.++.  ..++.+.+.++.++..|+-.........+++
T Consensus       296 n~~~~r~l~k~~lslLralAG~Ds----vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~  371 (461)
T KOG4199|consen  296 NEQGNRTLAKTCLSLLRALAGSDS----VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA  371 (461)
T ss_pred             chhhHHHHHHHHHHHHHHHhCCCc----hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc
Confidence            22   3466889999999999887    9999999999999999986  4588899999999999996555555544899


Q ss_pred             CChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          348 LIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       348 g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      |+-...|+.|+..  -..+|.+|++.+.|+..++    .+.. ...-+.+++.|+.--... .+..+..|-..||-+.-
T Consensus       372 G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs----~~~~-~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  372 GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS----AENR-TILLANGIEKLIRTAKAN-HETCEAAAKAALRDLGC  444 (461)
T ss_pred             chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh----hhcc-chHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence            9999999999874  4568899999999999863    2333 333355668888766666 66677777778887753

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.69  E-value=1.9e-17  Score=123.39  Aligned_cols=72  Identities=43%  Similarity=0.915  Sum_probs=61.6

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      +|++|.||||+++|.|||++++||+|++.||++|+ .++..+||.|+++++..++.||..+++.|++|+.++.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l-~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWL-EQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHH-CTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHH-HcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            57899999999999999999999999999999999 5568899999999999999999999999999998874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=4.1e-15  Score=157.25  Aligned_cols=277  Identities=15%  Similarity=0.094  Sum_probs=214.2

Q ss_pred             HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhc--cc-cc--ccchHHHHHHHHHHHhhcCCChhhhhhcc-cCCc
Q 038250          145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFS--KT-CL--DENVSVLEEILSTLTLLFPLAGEGLTYLG-SASS  218 (444)
Q Consensus       145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~--~~-~~--~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~g~  218 (444)
                      .|+..|.+++.+ +++|..|-+.|++.++.+||.-..  .+ .+  .....++..|..+|.++.-.+..||..+- ..|.
T Consensus       317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            677888888754 789999999999999999884210  11 00  13457899999999944445556777665 5799


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      |+.+|..|.+...++.+--+.+|+||+=..+ ..++.+ ...|-+..|+...-........+..+.|||||+.|..   +
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL-rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct---e  471 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL-RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT---E  471 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH-HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc---c
Confidence            9999999999999999999999999953333 456666 7789999998774433256788999999999998875   6


Q ss_pred             hhHHHHh-cCcHHHHHHHhhcc----ccchHHHHHHHHHHhcC---ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250          298 PIQKFVD-MGLVSLLLEMLVDA----QRSLCEKALSVLDGLCS---SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV  369 (444)
Q Consensus       298 ~~~~i~~-~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~---~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~  369 (444)
                      |+..|.. -|++..||.+|...    .-.++|.|-++|.|.+.   ..+...+|+.+..++..|+..|++.+-.+..+++
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence            9999977 69999999999843    45788999999999875   3345556668899999999999998999999999


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCC
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLEC  431 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~  431 (444)
                      ++||||+..+    .+..+.+.+.|+|+-|..|+.+. ...+-+.++..|+++-.++.-+.|
T Consensus       552 GTLWNLSAR~----p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RPAkq~  608 (2195)
T KOG2122|consen  552 GTLWNLSARS----PEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRPAKQA  608 (2195)
T ss_pred             hhhhhhhcCC----HHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCchhhh
Confidence            9999999954    45555566999999999999999 555555555545444445533333

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.65  E-value=1e-14  Score=148.42  Aligned_cols=286  Identities=14%  Similarity=0.120  Sum_probs=224.2

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      |..++..|.+.    ..+++.+|+.+|++|...+..  |+-.|.+.|+|+.|+++|+..  .    |.++++.+..+|+ 
T Consensus       277 I~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t--~----D~ev~e~iTg~LW-  345 (717)
T KOG1048|consen  277 IPKLVALLDHR----NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT--Q----DDEVRELITGILW-  345 (717)
T ss_pred             HHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh--c----chHHHHHHHHHHh-
Confidence            55677777665    778999999999999977665  999999999999999999642  2    6889999999999 


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSG--------------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      |++..+..|..|+ ..++..|-.-+-..              ..++-.+++..|+|+++...+.++.+.+-.|.|..|+.
T Consensus       346 NLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~  424 (717)
T KOG1048|consen  346 NLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF  424 (717)
T ss_pred             cccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence            9998877776665 44555555533211              24566789999999987788999999888899999998


Q ss_pred             HhcC-----CCChHHHHHHHHHHHHHh-----------------------------------------------------
Q 038250          268 LIKE-----PICPTATKASLVVVYRTI-----------------------------------------------------  289 (444)
Q Consensus       268 ll~~-----~~~~~~~~~a~~aL~~L~-----------------------------------------------------  289 (444)
                      .+++     ..+...++++.-.|+||+                                                     
T Consensus       425 ~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~  504 (717)
T KOG1048|consen  425 SIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPER  504 (717)
T ss_pred             HHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccc
Confidence            8761     113345555555555553                                                     


Q ss_pred             -------------------------------------------cCCCC-CCchhHHH-HhcCcHHHHHHHhhccccchHH
Q 038250          290 -------------------------------------------TSASA-TEKPIQKF-VDMGLVSLLLEMLVDAQRSLCE  324 (444)
Q Consensus       290 -------------------------------------------~~~~~-~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~  324 (444)
                                                                 ...-- ....+..+ ....++++|+++|+.++..++.
T Consensus       505 ~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~  584 (717)
T KOG1048|consen  505 ATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVR  584 (717)
T ss_pred             ccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHH
Confidence                                                       32210 01234444 5678999999999999999999


Q ss_pred             HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      .++.+|.||+.+..++..+ . .++++.||+.|...      +++....++.+|+++..    .+......+.+.++++.
T Consensus       585 s~a~~LrNls~d~rnk~li-g-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~----~~~~nAkdl~~~~g~~k  658 (717)
T KOG1048|consen  585 SAAGALRNLSRDIRNKELI-G-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR----KNVLNAKDLLEIKGIPK  658 (717)
T ss_pred             HHHHHHhhhccCchhhhhh-h-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH----HhHHHHHHHHhccChHH
Confidence            9999999999999988888 5 68999999999764      25666888999999997    35778888999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      |+.+..+..+++.-+.|.-+|..|-.+.+
T Consensus       659 L~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  659 LRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999997788999999888888876654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.62  E-value=6.5e-14  Score=129.68  Aligned_cols=197  Identities=13%  Similarity=0.099  Sum_probs=169.4

Q ss_pred             HhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038250          164 IVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLRE  243 (444)
Q Consensus       164 i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~  243 (444)
                      +.+.+-++.|+.+|++.      +|+.+++.|+.++. +.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|
T Consensus         8 ~l~~~~l~~Ll~lL~~t------~dp~i~e~al~al~-n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N   80 (254)
T PF04826_consen    8 ILEAQELQKLLCLLEST------EDPFIQEKALIALG-NSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN   80 (254)
T ss_pred             CcCHHHHHHHHHHHhcC------CChHHHHHHHHHHH-hhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence            46677889999999642      26899999999999 888899999999999999999999999999999999999999


Q ss_pred             HHhcchhhHHHhhcccccHHHHHHHhcC-CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch
Q 038250          244 IVSSDHRKVNVLLDIEGAIEPLFKLIKE-PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL  322 (444)
Q Consensus       244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~  322 (444)
                      + +.+.+++..| .  ..|+.+++...+ +.+..++..++++|.||+..++    ++..+.  +.++.++.+|..++..+
T Consensus        81 l-s~~~en~~~I-k--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~----~~~~l~--~~i~~ll~LL~~G~~~~  150 (254)
T PF04826_consen   81 L-SVNDENQEQI-K--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND----YHHMLA--NYIPDLLSLLSSGSEKT  150 (254)
T ss_pred             c-CCChhhHHHH-H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc----hhhhHH--hhHHHHHHHHHcCChHH
Confidence            9 7788889888 4  357777775444 3467899999999999998876    555554  47999999999999999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccc
Q 038250          323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKN  378 (444)
Q Consensus       323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~  378 (444)
                      +..++++|.+|+.++.....+ ..+++++.++.++.+. +......++..+.||..+
T Consensus       151 k~~vLk~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  151 KVQVLKVLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999999999999998888 6778999999988775 566778889999999664

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=1.6e-13  Score=127.15  Aligned_cols=200  Identities=14%  Similarity=0.156  Sum_probs=173.8

Q ss_pred             cccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250          213 LGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       213 i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      +.+++-++.|+.+|+.. ++.+++.|..++.+. +..+.+++.| ...|+++.+..+|.++ ++.++..|+++|.|++.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~I-r~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDII-RDLGGISLIGSLLNDP-NPSVREKALNALNNLSVN   84 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHH-HHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCC
Confidence            35678899999999965 899999999999999 6788999999 6689999999999999 899999999999999999


Q ss_pred             CCCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250          292 ASATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV  369 (444)
Q Consensus       292 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~  369 (444)
                      .+    |+..+-.  .++.+++.+.+.  +..++..++.+|.+|+..++.+..+ .  +.++.++.++.+++...+.+++
T Consensus        85 ~e----n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~--~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   85 DE----NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-A--NYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             hh----hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-H--hhHHHHHHHHHcCChHHHHHHH
Confidence            87    7777643  578888766543  7788999999999999877777776 3  5799999999999999999999


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL  429 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~  429 (444)
                      ++|.+|+.+     +...++++.++++..++.+++...+...-..+..+...+++++...
T Consensus       156 k~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  156 KVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            999999994     7788999999999999999999867778888888888888877533

>smart00504 Ubox Modified RING finger domain

Probab=99.56  E-value=3.7e-15  Score=108.29  Aligned_cols=63  Identities=51%  Similarity=0.905  Sum_probs=58.4

Q ss_pred             ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250           36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW  100 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~  100 (444)
                      +|.||||+++|++||+++|||+||+.||.+|+. + ...||.|+++++..++.+|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~-~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL-S-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH-H-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            478999999999999999999999999999993 3 67899999999888999999999999876

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.47  E-value=5.7e-13  Score=141.38  Aligned_cols=231  Identities=13%  Similarity=0.060  Sum_probs=191.0

Q ss_pred             hHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC-CChh-hhhhcccCC
Q 038250          141 AGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP-LAGE-GLTYLGSAS  217 (444)
Q Consensus       141 ~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~-~~~~-~~~~i~~~g  217 (444)
                      ..+++|+++|.+|...+..||..+.. .|+++.+|.-|.+.       ..+++.-...+|+ |++ ..+. .+..+.+.|
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-------peeL~QV~AsvLR-NLSWRAD~nmKkvLrE~G  437 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-------PEELLQVYASVLR-NLSWRADSNMKKVLRETG  437 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-------hHHHHHHHHHHHH-hccccccccHHHHHHhhh
Confidence            36789999999999988889988875 69999999999642       2366777778888 554 4443 466777899


Q ss_pred             cHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCCC
Q 038250          218 SMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       218 ~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      -+..|+. .|+..........+.+||||+.+..+||..|-...|++.+||.+|.-.   ....+.+.|-+.|+|++++-.
T Consensus       438 sVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA  517 (2195)
T KOG2122|consen  438 SVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA  517 (2195)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence            9988887 455555566678899999998888899999988889999999999854   246789999999999987755


Q ss_pred             CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250          294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL  372 (444)
Q Consensus       294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  372 (444)
                      +++..++.+.+..++..|++.|.+.+-.++.+++++||||+. +++.++.+ .+.|+|+.|-.++.+....+.+-++.+|
T Consensus       518 t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L-wD~gAv~mLrnLIhSKhkMIa~GSaaAL  596 (2195)
T KOG2122|consen  518 TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML-WDDGAVPMLRNLIHSKHKMIAMGSAAAL  596 (2195)
T ss_pred             ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH-HhcccHHHHHHHHhhhhhhhhhhHHHHH
Confidence            445588888999999999999999999999999999999986 56666666 9999999999999998888889999999


Q ss_pred             HHHccccc
Q 038250          373 WKLCKNEE  380 (444)
Q Consensus       373 ~~L~~~~~  380 (444)
                      .||-.+-|
T Consensus       597 rNLln~RP  604 (2195)
T KOG2122|consen  597 RNLLNFRP  604 (2195)
T ss_pred             HHHhcCCc
Confidence            99987643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.43  E-value=2.1e-12  Score=106.25  Aligned_cols=118  Identities=19%  Similarity=0.275  Sum_probs=106.7

Q ss_pred             cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250          213 LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       213 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  292 (444)
                      +++.|+++.|+.+|.+++...++.++++|.+++..+++....+ ...|+++.|+.+|.++ ++.++..++++|.+|+.+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV-VEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence            5578999999999999999999999999999977768888888 4569999999999988 8999999999999999887


Q ss_pred             CCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          293 SATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      .   .....+.+.|+++.|+++|.+++..+++.++++|.+|+.
T Consensus        81 ~---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 E---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             H---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            4   467777889999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.41  E-value=1.3e-10  Score=119.32  Aligned_cols=271  Identities=14%  Similarity=0.167  Sum_probs=203.2

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA  206 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~  206 (444)
                      +...|...+.+.++.++.-++..|.+++.+++.....+.+.+.++.++..|..   +    +..+...|..+|. .++.+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~----d~~Va~~A~~~L~-~l~~~  149 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---P----DLSVAKAAIKALK-KLASH  149 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---C----cHHHHHHHHHHHH-HHhCC
Confidence            33344333333488899999999999998877667788889999999999942   2    6889999999999 66666


Q ss_pred             hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHH
Q 038250          207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVY  286 (444)
Q Consensus       207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  286 (444)
                      +.....+...+.+..|..++...+..+|..+..++.++++.+++....+ ...|+++.++..|+++ |.-++.+++..|.
T Consensus       150 ~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~d-DiLvqlnalell~  227 (503)
T PF10508_consen  150 PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSD-DILVQLNALELLS  227 (503)
T ss_pred             chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence            6666777788889999999988888999999999999988899999888 5579999999999996 8889999999999


Q ss_pred             HHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--cc---c-hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH---
Q 038250          287 RTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QR---S-LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI---  357 (444)
Q Consensus       287 ~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~---~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll---  357 (444)
                      .|+..+.    +...+.+.|+++.|+.++.+.  ++   . ..-..+....+++.....  .+.   +..|.+++.+   
T Consensus       228 ~La~~~~----g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~---~~~p~~~~~l~~~  298 (503)
T PF10508_consen  228 ELAETPH----GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL---ELYPAFLERLFSM  298 (503)
T ss_pred             HHHcChh----HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH---HHHHHHHHHHHHH
Confidence            9999766    899999999999999999754  22   1 223344566666663111  121   2344444444   


Q ss_pred             -hhcChhHHHHHHHHHHHHccccccchHHHHHHH-H-hhChHHHHHH----HHhcCCChHHHHHHHHHHHHH
Q 038250          358 -LRVSDLATEFAVSILWKLCKNEEREEKTAFAEA-L-QVGAFQKLLL----LLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       358 -~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~-~~g~l~~Ll~----ll~~~~~~~~k~~a~~ll~~l  422 (444)
                       .+.+...+..|..+|+.|+..     .+....+ . ..+.+...+.    ...++ +..+|-++...+..+
T Consensus       299 ~~s~d~~~~~~A~dtlg~igst-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  299 LESQDPTIREVAFDTLGQIGST-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASI  364 (503)
T ss_pred             hCCCChhHHHHHHHHHHHHhCC-----HHHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence             445778889999999999974     3444444 3 3344444444    44444 567788887766666

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=9.8e-12  Score=102.27  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          258 IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       258 ~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                      ..|+++.|+.++.++ ++..+..++++|.+++.+.+   .....+++.|+++.|+++|.++++.++..++++|++|+...
T Consensus         5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            469999999999988 78999999999999999843   48888999999999999999999999999999999999977


Q ss_pred             hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      ......+.+.|+++.+++++...+..+++.|+++|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            6655555888999999999998889999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.35  E-value=3.6e-13  Score=88.18  Aligned_cols=40  Identities=43%  Similarity=0.856  Sum_probs=30.9

Q ss_pred             cccccccCcCceecCCcchhcHHHHHHHHHhcCC--CCCCCC
Q 038250           39 CPISLDLMKDPVTLSTGITYDRENIEKWIHEDGN--ITCPVT   78 (444)
Q Consensus        39 Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c   78 (444)
                      ||||+++|++||+++|||+||+.||.+|++..+.  ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999999999999999999999943322  579987

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.30  E-value=3.2e-12  Score=124.09  Aligned_cols=81  Identities=15%  Similarity=0.187  Sum_probs=72.0

Q ss_pred             CCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 038250           22 GVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWC  101 (444)
Q Consensus        22 ~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~  101 (444)
                      |...+.+....++..+.|+||.++|.+|++++|||+||..||..|+  .....||.|+..+....+.+|..+.++|+.|.
T Consensus        12 w~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l--~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~   89 (397)
T TIGR00599        12 WLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCL--SNQPKCPLCRAEDQESKLRSNWLVSEIVESFK   89 (397)
T ss_pred             hccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHH--hCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence            6666767778889999999999999999999999999999999999  34458999999998778999999999999997


Q ss_pred             Hhc
Q 038250          102 VEN  104 (444)
Q Consensus       102 ~~~  104 (444)
                      ...
T Consensus        90 ~~R   92 (397)
T TIGR00599        90 NLR   92 (397)
T ss_pred             Hhh
Confidence            654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.28  E-value=7e-10  Score=105.86  Aligned_cols=277  Identities=8%  Similarity=0.029  Sum_probs=203.3

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      .|.+...+..++|.+.|.++.++|..+.+.||-..++++|+++.......+.+...-+.+.|.+-+-.+++.+..+++.|
T Consensus        99 ~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~g  178 (604)
T KOG4500|consen   99 PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAG  178 (604)
T ss_pred             CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcc
Confidence            36778899999999999999999999999999999999997652111112345666677788844445667888999999


Q ss_pred             cHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          218 SMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       218 ~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      +++.|+..+.-+  +.+.-+......+||.+...+ ..... .......-|++++.+..++...+-....|...+.++. 
T Consensus       179 Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~-~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-  256 (604)
T KOG4500|consen  179 VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFC-KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-  256 (604)
T ss_pred             cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhh-ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-
Confidence            999999988654  677777777777887655444 33344 4567888889999877667788888888889988876 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhhc-cccc-------hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLVD-AQRS-------LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~~-~~~~-------~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                         .+-.+++.|.+..++++++. .+-.       .-..++.....|...++.-..+..+...+..+++-+.+.+.....
T Consensus       257 ---Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t  333 (604)
T KOG4500|consen  257 ---VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLIT  333 (604)
T ss_pred             ---eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHH
Confidence               89999999999999999985 2221       223444444445555555555533333677777777777777888


Q ss_pred             HHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC----CChHHHHHHHHHHHHHHh
Q 038250          367 FAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG----CADKTKEHVSELLKLLNP  424 (444)
Q Consensus       367 ~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~----~~~~~k~~a~~ll~~l~~  424 (444)
                      .+.-+++|+++.     +.....+++.|.+..|++++...    .+-+.+-.+..+||.+.-
T Consensus       334 ~g~LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I  390 (604)
T KOG4500|consen  334 MGSLAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI  390 (604)
T ss_pred             HHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence            888899999994     67788889999999999976652    133445555557777753

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.27  E-value=1.4e-09  Score=103.83  Aligned_cols=283  Identities=13%  Similarity=0.077  Sum_probs=195.2

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc-ccchHHHHHHHHHHHhhcC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL-DENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~-~~~~~~~~~a~~~L~~~l~  204 (444)
                      .+++.+.+..   .++...-....|...+ +++..+-.+++.|.+..++++++.+++-+. .++......+......++.
T Consensus       227 ~l~~ll~~~v---~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt  302 (604)
T KOG4500|consen  227 MLLQLLPSMV---REDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT  302 (604)
T ss_pred             HHHHHHHHhh---ccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence            4444444443   2223333344444444 566788899999999999999987533211 1223344455555553444


Q ss_pred             CChhhhhhcccC-CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC----CChHHHH
Q 038250          205 LAGEGLTYLGSA-SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP----ICPTATK  279 (444)
Q Consensus       205 ~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~  279 (444)
                      + ++.-+.+... ..+..+++.+.|++......++.+|+|++ ..++++..+ ...|++..|+.+|...    .+.+.+.
T Consensus       303 G-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfa-R~D~~ci~~-v~~~~~nkL~~~l~~~~~vdgnV~~qh  379 (604)
T KOG4500|consen  303 G-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFA-RRDDICIQL-VQKDFLNKLISCLMQEKDVDGNVERQH  379 (604)
T ss_pred             C-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhh-ccchHHHHH-HHHHHHHHHHHHHHHhcCCCccchhHH
Confidence            4 4444444444 48999999999999999999999999995 566677777 4579999999998642    3688999


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      +++.||+|+..--.    |+..++.+|++++++..+....+.++-.-+.+|+.+....+ .-.++..+...+..||+--.
T Consensus       380 A~lsALRnl~IPv~----nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsk  455 (604)
T KOG4500|consen  380 ACLSALRNLMIPVS----NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSK  455 (604)
T ss_pred             HHHHHHHhccccCC----chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhh
Confidence            99999999999987    99999999999999999999999999999999998865443 22333333334444444333


Q ss_pred             hcChh-HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          359 RVSDL-ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       359 ~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      +.+.. +....-+.|..+-+|+..  .+.+..+.+.|+|..++..+... .-..+..|...|-.+
T Consensus       456 s~D~aGv~gESnRll~~lIkHs~~--kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~  517 (604)
T KOG4500|consen  456 SPDFAGVAGESNRLLLGLIKHSKY--KDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLST  517 (604)
T ss_pred             CCccchhhhhhhHHHHHHHHhhHh--hhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHH
Confidence            33222 456677778888877543  55666666899999998877766 555555555544443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.24  E-value=6.3e-09  Score=106.98  Aligned_cols=284  Identities=15%  Similarity=0.121  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      -+..++..|...    |..+...|+..|..+++.. .....+...+.+..|.+++...       +..++..+..++..+
T Consensus       120 l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~-------~~~vR~Rv~el~v~i  187 (503)
T PF10508_consen  120 LLPLIIQCLRDP----DLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQS-------SDIVRCRVYELLVEI  187 (503)
T ss_pred             HHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhcc-------CHHHHHHHHHHHHHH
Confidence            344555666554    8889999999999999864 4566788888899999999532       466888899999877


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-Ch---H-H
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CP---T-A  277 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~---~-~  277 (444)
                      .+.+++....+.+.|.++.++..|++++.-+|.+++.+|..|+. .+.+.+.+ ...|+++.|+.++.+.. ++   . .
T Consensus       188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL-~~~gi~~~L~~~l~~~~~dp~~~~~~  265 (503)
T PF10508_consen  188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYL-EQQGIFDKLSNLLQDSEEDPRLSSLL  265 (503)
T ss_pred             HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHH-HhCCHHHHHHHHHhccccCCcccchh
Confidence            78889999999999999999999999889999999999999965 77888888 56799999999998652 22   1 1


Q ss_pred             HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH-hcCCCChHHHHHH
Q 038250          278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA-YNNSLIFPVIVKK  356 (444)
Q Consensus       278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~~g~i~~Lv~l  356 (444)
                      .-..+....+++...+    ..-.-.-...+..|.+++.+.+...+..|+.+|+.++...+|+..+ ....+.+..+++.
T Consensus       266 l~g~~~f~g~la~~~~----~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~  341 (503)
T PF10508_consen  266 LPGRMKFFGNLARVSP----QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKA  341 (503)
T ss_pred             hhhHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHH
Confidence            2223355566776532    2211112345566677777889999999999999999999999998 5555666666665


Q ss_pred             Hhh----cChhHHHHHHHHHHHHccccccchHHHHH-------HHHhhChHH-HHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          357 ILR----VSDLATEFAVSILWKLCKNEEREEKTAFA-------EALQVGAFQ-KLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       357 l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-------~~~~~g~l~-~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +..    +....+-.++.+|.++-...+....+.+.       .....+-.. .++.+++.. -+.+|-.+-.+++-+..
T Consensus       342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  342 IGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhc
Confidence            543    45567888999999984432221112111       222344444 667777766 89999999998888876


Q ss_pred             h
Q 038250          425 H  425 (444)
Q Consensus       425 ~  425 (444)
                      +
T Consensus       421 ~  421 (503)
T PF10508_consen  421 Q  421 (503)
T ss_pred             C
Confidence            5

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.22  E-value=9.7e-12  Score=107.65  Aligned_cols=61  Identities=26%  Similarity=0.476  Sum_probs=51.0

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh--------------cCCCCCCCCCcccCCCCCCccH
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE--------------DGNITCPVTNRVLTSFEPIPNH   91 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~--------------~~~~~CP~c~~~~~~~~l~~n~   91 (444)
                      ....+++.||||.+.+++|+++.|||.||+.||.+|+..              ++...||.|+..++...+.|.+
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            345667999999999999999999999999999999842              1246899999999887777654

>PRK09687 putative lyase; Provisional

Probab=99.20  E-value=2.6e-09  Score=101.23  Aligned_cols=212  Identities=13%  Similarity=0.065  Sum_probs=151.7

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS  218 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~  218 (444)
                      ++..+..|++.|..+-.....      ..-+++.|..++.  .+.    ++.|+..|+.+|.. +......    -...+
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~--~D~----d~~VR~~A~~aLG~-~~~~~~~----~~~~a  129 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRC------QDNVFNILNNLAL--EDK----SACVRASAINATGH-RCKKNPL----YSPKI  129 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHh--cCC----CHHHHHHHHHHHhc-ccccccc----cchHH
Confidence            777888888888887532210      1225677776642  222    67888888888883 3221110    11234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      ++.+...+.+.+..+|..|+.+|..+ . +          ..+++.|+.+|+++ ++.++..|+.+|..+..+.+     
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~-~-~----------~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~-----  191 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVI-N-D----------EAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNP-----  191 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhcc-C-C----------HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCH-----
Confidence            66677777778888998888888766 1 1          23578899999887 78899999999998833221     


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                             .+++.|+.+|.+.+..++..|+.+|..+           .+..+||.|++.+..++  +...|+.+|..+.. 
T Consensus       192 -------~~~~~L~~~L~D~~~~VR~~A~~aLg~~-----------~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-  250 (280)
T PRK09687        192 -------DIREAFVAMLQDKNEEIRIEAIIGLALR-----------KDKRVLSVLIKELKKGT--VGDLIIEAAGELGD-  250 (280)
T ss_pred             -------HHHHHHHHHhcCCChHHHHHHHHHHHcc-----------CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-
Confidence                   4688899999999999999999999875           33467899999887654  55678888888776 


Q ss_pred             cccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250          379 EEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       379 ~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                                    .-+++.|..++....++.++.+|.+.++
T Consensus       251 --------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        251 --------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             --------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                          3578999999985558999999988765

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.19  E-value=1.1e-11  Score=113.76  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=72.0

Q ss_pred             CCCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250           21 PGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW  100 (444)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~  100 (444)
                      .|+++..+-...+..-+.|.||.++|+-|++++||||||..||..|+  ..+..||.|...+....+..|..+.++|+.|
T Consensus         8 dw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L--~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen    8 DWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFL--SYKPQCPTCCVTVTESDLRNNRILDEIVKSL   85 (442)
T ss_pred             cCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHh--ccCCCCCceecccchhhhhhhhHHHHHHHHH
Confidence            45555445555667779999999999999999999999999999999  7788999999999998999999999999999


Q ss_pred             HHhcc
Q 038250          101 CVENR  105 (444)
Q Consensus       101 ~~~~~  105 (444)
                      .....
T Consensus        86 ~~~R~   90 (442)
T KOG0287|consen   86 NFARN   90 (442)
T ss_pred             HHHHH
Confidence            77653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.8e-08  Score=102.75  Aligned_cols=307  Identities=13%  Similarity=0.186  Sum_probs=219.3

Q ss_pred             CCCCCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHH
Q 038250          114 TPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLE  193 (444)
Q Consensus       114 ~p~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~  193 (444)
                      .|+.+-..+.|+.|+..+.++.   =.+.++.|+..|..+++.   +|..++..| +++|++.|..  |..   |+++..
T Consensus        14 ~~k~~s~aETI~kLcDRvessT---L~eDRR~A~rgLKa~srk---YR~~Vga~G-mk~li~vL~~--D~~---D~E~ik   81 (970)
T KOG0946|consen   14 PPKQQSAAETIEKLCDRVESST---LLEDRRDAVRGLKAFSRK---YREEVGAQG-MKPLIQVLQR--DYM---DPEIIK   81 (970)
T ss_pred             CCccccHHhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHhh--ccC---CHHHHH
Confidence            3444545678999999988774   578899999999999865   777777776 7999999963  332   789999


Q ss_pred             HHHHHHHhhcCCCh------hhh----------h-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHh
Q 038250          194 EILSTLTLLFPLAG------EGL----------T-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVL  255 (444)
Q Consensus       194 ~a~~~L~~~l~~~~------~~~----------~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i  255 (444)
                      .|+.++..+++.++      +.+          . .|-..+-|..|+..+...+-.+|..+...|.+|.+.- .+.+..+
T Consensus        82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l  161 (970)
T KOG0946|consen   82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL  161 (970)
T ss_pred             HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence            99999994444442      222          1 2335788999999999999999999999999997654 4777777


Q ss_pred             hcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhc-c--c-cchHHHHHHHH
Q 038250          256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEMLVD-A--Q-RSLCEKALSVL  330 (444)
Q Consensus       256 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~-~--~-~~~~~~a~~~L  330 (444)
                      ....-+|..|+.+|.+. ...++-.++-.|..|..++.    +.+++|. .++...|+.++.. |  + .-+++.|+.+|
T Consensus       162 l~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~----~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll  236 (970)
T KOG0946|consen  162 LVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNS----SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILL  236 (970)
T ss_pred             HHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence            77888999999999988 57788999999999999887    6666665 8899999999974 2  3 35789999999


Q ss_pred             HHhcCChhhHHHHhcCCCChHHHHHHHhh---cCh--------hHH--HHHHHHHHHHcccccc-ch-HHHHHHHHhhCh
Q 038250          331 DGLCSSDYGRGDAYNNSLIFPVIVKKILR---VSD--------LAT--EFAVSILWKLCKNEER-EE-KTAFAEALQVGA  395 (444)
Q Consensus       331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~---~~~--------~~~--~~a~~~L~~L~~~~~~-~~-~~~~~~~~~~g~  395 (444)
                      -||-..+.....+..+.+-||.|.++|..   ++.        +++  -.++.++..+....-. +. ..+...+...++
T Consensus       237 ~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~l  316 (970)
T KOG0946|consen  237 NNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHL  316 (970)
T ss_pred             HHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcch
Confidence            99998777777776999999999987753   221        111  2334444444432111 11 122234558999


Q ss_pred             HHHHHHHHhcC-CChHHHHHHHH-HHHHHHhhccCCCCCCcccc
Q 038250          396 FQKLLLLLQVG-CADKTKEHVSE-LLKLLNPHRARLECIDSMDF  437 (444)
Q Consensus       396 l~~Ll~ll~~~-~~~~~k~~a~~-ll~~l~~~~~~~~~~~~~~~  437 (444)
                      +..|..++-+. -...+...+.- +-..++.++.+-.-+...++
T Consensus       317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~  360 (970)
T KOG0946|consen  317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA  360 (970)
T ss_pred             HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence            99999966554 23344444333 55555666555555533333

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.14  E-value=6.7e-09  Score=100.53  Aligned_cols=254  Identities=16%  Similarity=0.188  Sum_probs=170.5

Q ss_pred             HHHHhccCcccchhHhhc---CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc------CCcHH
Q 038250          150 IKKWTKESDRNKRCIVDN---GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS------ASSMR  220 (444)
Q Consensus       150 L~~l~~~~~~~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~------~g~i~  220 (444)
                      +..+-+.....|..+++.   +.+..++++|+.. .    ++.++...++..+..++..++.....+..      .....
T Consensus        34 ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~-~----~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~  108 (312)
T PF03224_consen   34 IKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL-S----SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYS  108 (312)
T ss_dssp             HHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HH
T ss_pred             HHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc-c----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHH
Confidence            333333333445445553   4577888999653 1    25889999999999888777755554443      23688


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCc
Q 038250          221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      +++.++.+++..++..|+..|..|.+..+...... . .+.++.++..+++..   +...+..++.+|.+|...++    
T Consensus       109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~----  182 (312)
T PF03224_consen  109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE----  182 (312)
T ss_dssp             HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH----
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch----
Confidence            88899999999999999999999976665544443 2 477889998888642   23566899999999999887    


Q ss_pred             hhHHHHhcCcHHHHHHHh------h-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHH
Q 038250          298 PIQKFVDMGLVSLLLEML------V-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAV  369 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL------~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~  369 (444)
                      .|..+.+.|+++.|+.+|      . ..+..++-.++-+++.|+..++....+ .+.+.|+.|+++++.. .+.+...++
T Consensus       183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~L~~i~~~~~KEKvvRv~l  261 (312)
T PF03224_consen  183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEEL-NKKYLIPLLADILKDSIKEKVVRVSL  261 (312)
T ss_dssp             HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHH-HTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHH-hccchHHHHHHHHHhcccchHHHHHH
Confidence            999999999999999999      2 225678899999999999999999998 7777999999999875 778889999


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHH
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSEL  418 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~l  418 (444)
                      ++|.||....+   ......|+..|+++.+-.+.... .++++.+--..+
T Consensus       262 a~l~Nl~~~~~---~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  262 AILRNLLSKAP---KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             HHHHHTTSSSS---TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred             HHHHHHHhccH---HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            99999998644   23677777877766555554443 256666654443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK09687 putative lyase; Provisional

Probab=99.13  E-value=5.1e-09  Score=99.22  Aligned_cols=223  Identities=12%  Similarity=-0.006  Sum_probs=162.1

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      +..|+..|.+.    +..++..|+.+|..+-.           ..+++.+..++.+   .    ++.++..|+.+|. .+
T Consensus        25 ~~~L~~~L~d~----d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~---~----d~~vR~~A~~aLg-~l   81 (280)
T PRK09687         25 DDELFRLLDDH----NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS---K----NPIERDIGADILS-QL   81 (280)
T ss_pred             HHHHHHHHhCC----CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC---C----CHHHHHHHHHHHH-hc
Confidence            45677777665    78899999999987742           2267778888742   2    6899999999999 44


Q ss_pred             CCChhhhhhcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          204 PLAGEGLTYLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ...+..     ...+++.|..+ ++..++.++..|+.+|+++.......      ...++..|...+.++ ++.++..++
T Consensus        82 g~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D~-~~~VR~~a~  149 (280)
T PRK09687         82 GMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFDK-STNVRFAVA  149 (280)
T ss_pred             CCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhCC-CHHHHHHHH
Confidence            432221     23467888877 56668999999999999994222111      123456677778787 789999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      ++|..+..              ..+++.|+.+|.+.+..++..|+.+|..+..         .+..+++.|+.++...+.
T Consensus       150 ~aLg~~~~--------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D~~~  206 (280)
T PRK09687        150 FALSVIND--------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQDKNE  206 (280)
T ss_pred             HHHhccCC--------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcCCCh
Confidence            99965531              1279999999999999999999999999833         223457788898888889


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      .++..|+.+|..+-.               .-+++.|+..|+.+ .  ++..|+..|..+
T Consensus       207 ~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~-~--~~~~a~~ALg~i  248 (280)
T PRK09687        207 EIRIEAIIGLALRKD---------------KRVLSVLIKELKKG-T--VGDLIIEAAGEL  248 (280)
T ss_pred             HHHHHHHHHHHccCC---------------hhHHHHHHHHHcCC-c--hHHHHHHHHHhc
Confidence            999999999987654               35778888888776 3  444455444444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=7.7e-08  Score=93.25  Aligned_cols=259  Identities=13%  Similarity=0.114  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH
Q 038250          144 RDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV  223 (444)
Q Consensus       144 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv  223 (444)
                      .-...-|..|+-- .+|+..|.+.|.|..|+++...       ++++++...+..|. +++.+...|..++..|.+|.|+
T Consensus       322 ~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~-------~h~dL~~~tl~Llf-NlSFD~glr~KMv~~GllP~l~  392 (791)
T KOG1222|consen  322 TLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI-------QHPDLRKATLMLLF-NLSFDSGLRPKMVNGGLLPHLA  392 (791)
T ss_pred             HHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC-------CCHHHHHHHHHHhh-hccccccccHHHhhccchHHHH
Confidence            3333444455544 4689999999999999999942       26888888888888 9999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---------------------------------
Q 038250          224 WFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK---------------------------------  270 (444)
Q Consensus       224 ~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~---------------------------------  270 (444)
                      .+|.+++  -..-|...|.++ |.+++.+..+ .....|+.|.+.+-                                 
T Consensus       393 ~ll~~d~--~~~iA~~~lYh~-S~dD~~K~Mf-ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqg  468 (791)
T KOG1222|consen  393 SLLDSDT--KHGIALNMLYHL-SCDDDAKAMF-AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQG  468 (791)
T ss_pred             HHhCCcc--cchhhhhhhhhh-ccCcHHHHHH-HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcc
Confidence            9997664  223467777777 6677666666 33466665554432                                 


Q ss_pred             ----------------------------------------------CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250          271 ----------------------------------------------EPICPTATKASLVVVYRTITSASATEKPIQKFVD  304 (444)
Q Consensus       271 ----------------------------------------------~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~  304 (444)
                                                                    ...+.+..-.++++|.||...+-   .....+.+
T Consensus       469 L~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl---dw~~ilq~  545 (791)
T KOG1222|consen  469 LDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL---DWAKILQS  545 (791)
T ss_pred             hHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC---CHHHHHhh
Confidence                                                          11123344445555555555443   13334445


Q ss_pred             cCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccc
Q 038250          305 MGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       305 ~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~  380 (444)
                      ...||-+-..|..+  ..+++-..+-+++.++. ++....++..+|.|+.|+++|+..  ++...-..+.++..+-.|  
T Consensus       546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H--  622 (791)
T KOG1222|consen  546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH--  622 (791)
T ss_pred             ccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH--
Confidence            67777777777654  44566666777777776 445555558899999999999874  455555667777777775  


Q ss_pred             cchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          381 REEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       381 ~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                         +..+.-++ +...-..|+.+|... +..+|+-+-..|-.++.+
T Consensus       623 ---e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  623 ---ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             ---HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHh
Confidence               44555566 445556889999888 888888888888777765

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.01  E-value=2.1e-10  Score=74.26  Aligned_cols=38  Identities=47%  Similarity=0.932  Sum_probs=32.4

Q ss_pred             cccccccCcCc-eecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250           39 CPISLDLMKDP-VTLSTGITYDRENIEKWIHEDGNITCPVT   78 (444)
Q Consensus        39 Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c   78 (444)
                      ||||.+.+.+| +.++|||+||+.|+.+|+ +. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~-~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYL-EK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHH-HC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHH-HC-cCCCcCC
Confidence            89999999999 567999999999999999 44 6889987

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=3.1e-10  Score=102.92  Aligned_cols=82  Identities=11%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             ccccccCCCCCCCCCCCCCCCC--CCCcCCCC-CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250            4 SWKRLRGGRGRRAGKKQPGVES--GGEMELTT-PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      +|.++++...+....+.--.+.  ....+..+ +..+.|.+|++...+|-.++|||.||..||..|.  .....||.||.
T Consensus       204 s~~q~~~s~~e~~~e~~~~~~~~~~s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~--~ek~eCPlCR~  281 (293)
T KOG0317|consen  204 SFLQHKRSSTESIEESKLNHSKLEDSNSLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWC--SEKAECPLCRE  281 (293)
T ss_pred             HHHhcccccccccccccccccchhhccCCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHH--ccccCCCcccc
Confidence            6677777555544422111111  22233333 4449999999999999999999999999999999  45556999999


Q ss_pred             ccCCCCC
Q 038250           81 VLTSFEP   87 (444)
Q Consensus        81 ~~~~~~l   87 (444)
                      .+++..+
T Consensus       282 ~~~pskv  288 (293)
T KOG0317|consen  282 KFQPSKV  288 (293)
T ss_pred             cCCCcce
Confidence            8876543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.8e-10  Score=100.28  Aligned_cols=58  Identities=29%  Similarity=0.509  Sum_probs=50.1

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCC-CCCCCCCcccCCCCCCccH
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGN-ITCPVTNRVLTSFEPIPNH   91 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~-~~CP~c~~~~~~~~l~~n~   91 (444)
                      -..|.|.||++.-+|||++.|||-||+.||++|+....+ ..||+|+..++...++|-+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            445999999999999999999999999999999954443 6789999999888777754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.95  E-value=1.6e-10  Score=80.42  Aligned_cols=60  Identities=28%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHH
Q 038250           34 PNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMI   97 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i   97 (444)
                      ++.+.|++|.++|++||.+ .|.|.||+.||.+.+   + ..||+|..+....+++.|..+.++|
T Consensus         5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~---~-~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI---G-SECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGT---T-TB-SSS--B-S-SS----HHHHHHH
T ss_pred             HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc---C-CCCCCcCChHHHHHHHhhhhhhccC
Confidence            3457999999999999976 899999999998766   2 2499999999888999999888775

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=6.5e-08  Score=99.36  Aligned_cols=208  Identities=15%  Similarity=0.089  Sum_probs=166.8

Q ss_pred             chHHHHHHHHHHHhhcCCC-hhhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLA-GEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      |+..|..|+.-|..+++.. ++.-..+--...+|.||.+|+.. +.++.-.||++|.+|+..-|.....+ +..++||.|
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v-V~~~aIPvl  259 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV-VDEHAIPVL  259 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee-ecccchHHH
Confidence            5777888888888777654 44444444567899999999876 79999999999999988888888877 668999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--ChhhHHHH
Q 038250          266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYGRGDA  343 (444)
Q Consensus       266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i  343 (444)
                      +.-|..=...++.+.++.||-.|++.+      -..+.++|++-+.+..|.-.+..++..|+++-.|+|.  .++.-.-+
T Consensus       260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H------~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v  333 (1051)
T KOG0168|consen  260 LEKLLTIEYIDVAEQSLQALEKISRRH------PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV  333 (1051)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHhhc------cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH
Confidence            987765446789999999999999875      4788999999999999988888999999999999996  34444444


Q ss_pred             hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                         ..++|.|-.+|...+....|.++-.+..++..-.. .++-..++...|.|....+|+...
T Consensus       334 ---~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~qLlsvt  392 (1051)
T KOG0168|consen  334 ---MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQLLSVT  392 (1051)
T ss_pred             ---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHHHHhcC
Confidence               26899999999887888888888888887654332 366777788888888877777655

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.9e-08  Score=97.38  Aligned_cols=193  Identities=18%  Similarity=0.164  Sum_probs=151.9

Q ss_pred             HHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250          193 EEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP  272 (444)
Q Consensus       193 ~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~  272 (444)
                      +.|+..|. +++.+-..-..+.....+..||..|..++.+.-......|..| |...+|+..+ ...|++..|++++...
T Consensus       281 rva~ylLl-NlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~eNK~~M-~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  281 RVAVYLLL-NLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFDENKIVM-EQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHH-HHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhccchHHH-HhccHHHHHHHhcCCC
Confidence            34455555 6666555555667788899999999999999999999999999 7889999999 5689999999999988


Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHH
Q 038250          273 ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPV  352 (444)
Q Consensus       273 ~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~  352 (444)
                       .++.++..+..|.|++.+..    ++..++..|.+|.|..+|.+...  ..-|+..|+.++.++..+..+ ....+|+.
T Consensus       358 -h~dL~~~tl~LlfNlSFD~g----lr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mf-ayTdci~~  429 (791)
T KOG1222|consen  358 -HPDLRKATLMLLFNLSFDSG----LRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMF-AYTDCIKL  429 (791)
T ss_pred             -CHHHHHHHHHHhhhcccccc----ccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHH-HHHHHHHH
Confidence             89999999999999999987    99999999999999999975533  244899999999987777777 77899999


Q ss_pred             HHHHHhhcCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250          353 IVKKILRVSD-LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL  401 (444)
Q Consensus       353 Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~  401 (444)
                      +.+.+.+++. ++...-+..-.|||.+     .++.+.+++..++..|++
T Consensus       430 lmk~v~~~~~~~vdl~lia~ciNl~ln-----kRNaQlvceGqgL~~LM~  474 (791)
T KOG1222|consen  430 LMKDVLSGTGSEVDLALIALCINLCLN-----KRNAQLVCEGQGLDLLME  474 (791)
T ss_pred             HHHHHHhcCCceecHHHHHHHHHHHhc-----cccceEEecCcchHHHHH
Confidence            9999887643 3333333333577774     445555556666665554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=7.1e-08  Score=91.20  Aligned_cols=186  Identities=19%  Similarity=0.161  Sum_probs=154.1

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      +.+-++.|+.-|. .+..+-+|-..+...|++.+++..|.+.+.++|+.|+++|+..+..++...+.+ .+.|+++.|+.
T Consensus        96 ~le~ke~ald~Le-~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v-~E~~~L~~Ll~  173 (342)
T KOG2160|consen   96 DLEDKEDALDNLE-ELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQV-IELGALSKLLK  173 (342)
T ss_pred             CHHHHHHHHHHHH-HHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHH-HHcccHHHHHH
Confidence            5677888888888 666677888889999999999999999999999999999999998999999988 55799999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc--cccchHHHHHHHHHHhcCChhhHHHHhc
Q 038250          268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYN  345 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~  345 (444)
                      .|.+..+..++..|+.|+..|..+..   .....+...++...|..+|.+  .+...+..++.+|..|.........+..
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~---~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNK---PGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCc---HHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99977567888999999999999876   577888889999999999997  4677889999999999875554444535


Q ss_pred             CCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          346 NSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       346 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      ..|....++.+.......+.+.++.++..+...
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            556666666655556778888888887776653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.90  E-value=5e-08  Score=94.45  Aligned_cols=216  Identities=13%  Similarity=0.129  Sum_probs=152.0

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc------CchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN------GAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~------G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      .+++.|...  +.+.+..+..+.-+.++..+++...+.+.+.      ....++++++.+   +    |..++..|+.+|
T Consensus        59 ~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~---~----D~~i~~~a~~iL  129 (312)
T PF03224_consen   59 LFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR---N----DSFIQLKAAFIL  129 (312)
T ss_dssp             ---HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----S----SHHHHHHHHHHH
T ss_pred             HHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC---C----CHHHHHHHHHHH
Confidence            344444443  1267899999999999999988666666652      256777776632   2    688999999999


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh------
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI------  269 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll------  269 (444)
                      ..+++..+....... .+.++.++.+|++    ++.+.+..|+.+|.+| -..+++|..+ ...|+++.|+.++      
T Consensus       130 t~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L-L~~~~~R~~f-~~~~~v~~l~~iL~~~~~~  206 (312)
T PF03224_consen  130 TSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL-LRSKEYRQVF-WKSNGVSPLFDILRKQATN  206 (312)
T ss_dssp             HHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH-HTSHHHHHHH-HTHHHHHHHHHHHH-----
T ss_pred             HHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH-hCcchhHHHH-HhcCcHHHHHHHHHhhccc
Confidence            966666554333222 5678888888876    3456678899999999 5788999999 5589999999999      


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChh--hHHHHhcC
Q 038250          270 KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDY--GRGDAYNN  346 (444)
Q Consensus       270 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~--~~~~i~~~  346 (444)
                      .+..+...+-.++-++|-|+.+.+    ....+.+.+.|+.|+++++.. .+.+..-++++|.||...+.  ....+ +.
T Consensus       207 ~~~~~~Ql~Y~~ll~lWlLSF~~~----~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m-v~  281 (312)
T PF03224_consen  207 SNSSGIQLQYQALLCLWLLSFEPE----IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM-VL  281 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHTTSHH----HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH-HH
T ss_pred             CCCCchhHHHHHHHHHHHHhcCHH----HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH-HH
Confidence            344457899999999999999986    889999999999999999854 77899999999999998666  45555 55


Q ss_pred             CCChHHHHHHHhh
Q 038250          347 SLIFPVIVKKILR  359 (444)
Q Consensus       347 ~g~i~~Lv~ll~~  359 (444)
                      .|+++.+ +.|..
T Consensus       282 ~~~l~~l-~~L~~  293 (312)
T PF03224_consen  282 CGLLKTL-QNLSE  293 (312)
T ss_dssp             H-HHHHH-HHHHS
T ss_pred             ccHHHHH-HHHhc
Confidence            5555444 44543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.89  E-value=1.4e-09  Score=71.33  Aligned_cols=40  Identities=38%  Similarity=0.986  Sum_probs=36.5

Q ss_pred             cccccccCcCce-ecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250           39 CPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVT   78 (444)
Q Consensus        39 Cpic~~~~~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c   78 (444)
                      ||||.+.+.+|+ +++|||+||..|+.+|+...+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 7899999999999999954677889987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.9e-09  Score=90.75  Aligned_cols=55  Identities=22%  Similarity=0.481  Sum_probs=44.4

Q ss_pred             CCCCccccccccccCcC--ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 038250           32 TTPNHFRCPISLDLMKD--PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI   88 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~--Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~   88 (444)
                      .-.+-+.||||+.-+.+  ||.++|||.||+.||...+  +....||.|++.+..+++.
T Consensus       127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al--k~~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL--KNTNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccccccCCCceecchhhccccccccchhHHHHHHHHHH--HhCCCCCCcccccchhhhe
Confidence            33444999999999886  5667999999999999998  5556799999877766543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.86  E-value=1.2e-09  Score=71.33  Aligned_cols=37  Identities=24%  Similarity=0.693  Sum_probs=23.2

Q ss_pred             cccccccCcC----ceecCCcchhcHHHHHHHHHhc--CCCCCC
Q 038250           39 CPISLDLMKD----PVTLSTGITYDRENIEKWIHED--GNITCP   76 (444)
Q Consensus        39 Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~--~~~~CP   76 (444)
                      ||||.+ |.+    |+.++|||+||+.|++++++..  +.+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    9999999999999999999533  357787

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=5.1e-07  Score=85.46  Aligned_cols=193  Identities=21%  Similarity=0.218  Sum_probs=152.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250          228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL  307 (444)
Q Consensus       228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~  307 (444)
                      +.+.+-++.|..-|..++ .+-+|..-+ ...|++.+|+..++++ +..+++.|+++|...+.++.   ..+..+.+.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl-~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP---~~Qe~v~E~~~  167 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDL-ISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNP---KSQEQVIELGA  167 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhH-hhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCH---HHHHHHHHccc
Confidence            346888899999999994 556777777 5679999999999988 89999999999999999875   67888999999


Q ss_pred             HHHHHHHhhcc-ccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhh--cChhHHHHHHHHHHHHccccccch
Q 038250          308 VSLLLEMLVDA-QRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNEEREE  383 (444)
Q Consensus       308 v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~  383 (444)
                      ++.|+.+|... +..++.+|+.+++.|.. ...+..++ ...+|...|...|.+  .+...+..++..+..|.....+  
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f-l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s--  244 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF-LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS--  244 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH-HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh--
Confidence            99999999854 55677999999999987 44567777 677889999999998  5778889999999999884332  


Q ss_pred             HHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH-HHHHHHhhccCCCCC
Q 038250          384 KTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLNPHRARLECI  432 (444)
Q Consensus       384 ~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~~~~~~~~~~  432 (444)
                        ....+...|....++.+.... ...+++.|.. ++..+.....+.+|+
T Consensus       245 --~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~~~~~~~~  291 (342)
T KOG2160|consen  245 --DEDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLSELSTRKELF  291 (342)
T ss_pred             --hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHHHhhcchhh
Confidence              222444566666666677666 7788888877 777777666555454

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.86  E-value=8.6e-07  Score=87.79  Aligned_cols=279  Identities=13%  Similarity=0.092  Sum_probs=187.6

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..|..    +|.-.+..|...|..+...++.+.......-.+..|...|.+.  .    +...+.-++..|. .+-
T Consensus       104 ~~fl~lL~~----~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~--~----~~~~~~~~v~~L~-~LL  172 (429)
T cd00256         104 EPFFNLLNR----QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI--T----NNDYVQTAARCLQ-MLL  172 (429)
T ss_pred             HHHHHHHcC----CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc--C----CcchHHHHHHHHH-HHh
Confidence            345555543    3677888889889888766554322111111223334444321  1    3556767777777 455


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ..++.|..+.+.++++.|+.+|+..  +...+-+++.+++-| +.+++..+.+ ...+.|+.|+++++....+.+.+-++
T Consensus       173 ~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l  250 (429)
T cd00256         173 RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVL  250 (429)
T ss_pred             CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHH
Confidence            5788998888888999999999864  468889999999999 6777777777 56799999999999876788999999


Q ss_pred             HHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhc-c--ccchHHHHHH-------HHHHhcCChhhHHH-------
Q 038250          283 VVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVD-A--QRSLCEKALS-------VLDGLCSSDYGRGD-------  342 (444)
Q Consensus       283 ~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~-~--~~~~~~~a~~-------~L~~L~~~~~~~~~-------  342 (444)
                      .+|+||.....+.   ......+++.|..+ +++.|.. .  |+++.+..-.       .+..++..++...+       
T Consensus       251 ~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~  329 (429)
T cd00256         251 AIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLH  329 (429)
T ss_pred             HHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            9999998753200   12445667776655 4555542 2  5555443322       22334443433332       


Q ss_pred             -----------------Hh-cCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250          343 -----------------AY-NNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL  403 (444)
Q Consensus       343 -----------------i~-~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll  403 (444)
                                       +- -+-..+..|+++|.++ ++.....|+.=++.++++.|.|    +..+-+-|+=..++++|
T Consensus       330 WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g----r~i~~~lg~K~~vM~Lm  405 (429)
T cd00256         330 WSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG----KDVVEQLGGKQRVMRLL  405 (429)
T ss_pred             CCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH----HHHHHHcCcHHHHHHHh
Confidence                             21 1112678899988543 5667788899999999987752    33333688888999999


Q ss_pred             hcCCChHHHHHHHHHHHHH
Q 038250          404 QVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       404 ~~~~~~~~k~~a~~ll~~l  422 (444)
                      ... ++++|..|...++.+
T Consensus       406 ~h~-d~~Vr~eAL~avQkl  423 (429)
T cd00256         406 NHE-DPNVRYEALLAVQKL  423 (429)
T ss_pred             cCC-CHHHHHHHHHHHHHH
Confidence            988 999999999877766

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.6e-07  Score=93.30  Aligned_cols=260  Identities=12%  Similarity=0.107  Sum_probs=194.0

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      +..|+..|...   +|+..+.+|+.+|.++..-.. +.-.-+--.-+||.|+.+|+.  +    .+.+++..|+++|..+
T Consensus       169 ~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E----~n~DIMl~AcRaltyl  239 (1051)
T KOG0168|consen  169 AKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--E----HNFDIMLLACRALTYL  239 (1051)
T ss_pred             HHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--c----ccHHHHHHHHHHHHHH
Confidence            44555555554   378888999999888665432 222233344689999999952  2    2699999999999977


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      +..-++....+++.++||.|+.-|.. .-.++-|++..+|..|+ . ...+..+ . .|+|-..+..|.-- +..+++.|
T Consensus       240 ~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS-R-~H~~AiL-~-AG~l~a~LsylDFF-Si~aQR~A  314 (1051)
T KOG0168|consen  240 CEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS-R-RHPKAIL-Q-AGALSAVLSYLDFF-SIHAQRVA  314 (1051)
T ss_pred             HhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH-h-hccHHHH-h-cccHHHHHHHHHHH-HHHHHHHH
Confidence            77788888899999999999997754 46888999999999994 3 3456666 4 69999999888755 56799999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC---Ch-hhHHHHhcCCCChHHHHHHH
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS---SD-YGRGDAYNNSLIFPVIVKKI  357 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~---~~-~~~~~i~~~~g~i~~Lv~ll  357 (444)
                      +.+..|+|..=.  .+.-..+++  ++|.|-.+|+..+....|.++-.+..++.   +. +--.++ ...|.|.....++
T Consensus       315 laiaaN~Cksi~--sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql-~s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  315 LAIAANCCKSIR--SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL-CSHDLITNIQQLL  389 (1051)
T ss_pred             HHHHHHHHhcCC--CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH-hchhHHHHHHHHH
Confidence            999999997643  224555666  69999999999999999999988888875   33 333445 7789999999987


Q ss_pred             hhc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          358 LRV----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       358 ~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      .-.    +....-.-++.|..+|..    .+...+...+.++...|..+|+..
T Consensus       390 svt~t~Ls~~~~~~vIrmls~msS~----~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  390 SVTPTILSNGTYTGVIRMLSLMSSG----SPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             hcCcccccccchhHHHHHHHHHccC----ChHHHHHHHHhhHHHHHHHHHhcc
Confidence            543    223345566777777773    455777777889999999988765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.85  E-value=5.5e-07  Score=99.21  Aligned_cols=89  Identities=24%  Similarity=0.169  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ++.|+..|.+    .|+.+++.|+..|..+..           .++++.|+.+|+   ++    +..++..|+.+|..+.
T Consensus       623 ~~~L~~~L~D----~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~---D~----d~~VR~~Aa~aL~~l~  680 (897)
T PRK13800        623 VAELAPYLAD----PDPGVRRTAVAVLTETTP-----------PGFGPALVAALG---DG----AAAVRRAAAEGLRELV  680 (897)
T ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHc---CC----CHHHHHHHHHHHHHHH
Confidence            3455555554    488899999999887642           236788888883   22    6778888888776321


Q ss_pred             CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250          204 PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI  244 (444)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L  244 (444)
                      ..          ....+.|...|.+.++.+|..|+.+|..+
T Consensus       681 ~~----------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~  711 (897)
T PRK13800        681 EV----------LPPAPALRDHLGSPDPVVRAAALDVLRAL  711 (897)
T ss_pred             hc----------cCchHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence            10          01123444555555555555555555444

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.83  E-value=2.4e-09  Score=96.45  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ..+...+.|-||..+++-|+.++|||+||..||.+++  .....||+|+.+....-+..+..++.+++.|....
T Consensus        20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL--~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHL--GTQPFCPVCREDPCESRLRGSSGSREINESHARNR   91 (391)
T ss_pred             hcchhHHHhhhhhheeecceecccccchhHHHHHHHh--cCCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence            3445568999999999999999999999999999999  56678999999887766777777888888776544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.80  E-value=8.7e-07  Score=97.64  Aligned_cols=226  Identities=13%  Similarity=0.058  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.|+..|...    +..++..|+.+|..+....+          ..+.|...|++   .    ++.++..|+.+|. .
T Consensus       653 ~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~---~----d~~VR~~A~~aL~-~  710 (897)
T PRK13800        653 FGPALVAALGDG----AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGS---P----DPVVRAAALDVLR-A  710 (897)
T ss_pred             HHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcC---C----CHHHHHHHHHHHH-h
Confidence            345555555443    78889999899887743211          12445555532   1    4566666666655 2


Q ss_pred             cCCCh-------------hhhh----hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          203 FPLAG-------------EGLT----YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       203 l~~~~-------------~~~~----~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      +...+             ..|.    .+...+..+.|..+|.+.+.++|..++.+|..+ ...         ....++.|
T Consensus       711 ~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~-~~~---------~~~~~~~L  780 (897)
T PRK13800        711 LRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATL-GAG---------GAPAGDAV  780 (897)
T ss_pred             hccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHh-ccc---------cchhHHHH
Confidence            21000             0000    000111223344444444555555555555544 110         11236777


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc
Q 038250          266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN  345 (444)
Q Consensus       266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  345 (444)
                      ..+++++ ++.++..|+.+|.++.....             +++.|+..|.+.+..++..|+.+|..+..          
T Consensus       781 ~~ll~D~-d~~VR~aA~~aLg~~g~~~~-------------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------  836 (897)
T PRK13800        781 RALTGDP-DPLVRAAALAALAELGCPPD-------------DVAAATAALRASAWQVRQGAARALAGAAA----------  836 (897)
T ss_pred             HHHhcCC-CHHHHHHHHHHHHhcCCcch-------------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------
Confidence            7888777 67888888887777743221             23567777887788888888888876532          


Q ss_pred             CCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250          346 NSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       346 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                       ...++.|+.+|...+..++..|+.+|..+...              ....+.|..++... +..+|+.|+..|+
T Consensus       837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~--------------~~a~~~L~~al~D~-d~~Vr~~A~~aL~  895 (897)
T PRK13800        837 -DVAVPALVEALTDPHLDVRKAAVLALTRWPGD--------------PAARDALTTALTDS-DADVRAYARRALA  895 (897)
T ss_pred             -cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC--------------HHHHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence             34568888888888888999999998886321              12456777888877 8899999988876

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.79  E-value=1.9e-06  Score=85.38  Aligned_cols=247  Identities=11%  Similarity=0.053  Sum_probs=179.4

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc-----CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS-----ASSMRCMVWFLKSGDLSRRRNAVLVLR  242 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~A~~~L~  242 (444)
                      .++..++++|...  +    +.++....+..+..++..++..-..+.+     .+...+++.+|..++.-+...|+.+|.
T Consensus        53 ~y~~~~l~ll~~~--~----~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt  126 (429)
T cd00256          53 QYVKTFVNLLSQI--D----KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA  126 (429)
T ss_pred             HHHHHHHHHHhcc--C----cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence            5778888888532  2    5778888888888777666544444443     456788888999889999999999999


Q ss_pred             HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--cc
Q 038250          243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QR  320 (444)
Q Consensus       243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~  320 (444)
                      .|.+......... ...-.+..|...++++.+...+..++.+|.+|...++    .|..+.+.++++.|+.+|+..  +.
T Consensus       127 ~l~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~----~R~~f~~~~~v~~L~~~L~~~~~~~  201 (429)
T cd00256         127 KLACFGLAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE----YRFAFVLADGVPTLVKLLSNATLGF  201 (429)
T ss_pred             HHHhcCccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch----HHHHHHHccCHHHHHHHHhhccccH
Confidence            9965443221111 1111334555666655346788888999999999987    999999999999999999853  45


Q ss_pred             chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccch--HHHHHHHHhhChHH
Q 038250          321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREE--KTAFAEALQVGAFQ  397 (444)
Q Consensus       321 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~~~~g~l~  397 (444)
                      .++-.++-+++.|+..++....+ .+.+.|+.|+++++.. .+.+...++.+|.||...+....  ......|+..|+++
T Consensus       202 Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~  280 (429)
T cd00256         202 QLQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK  280 (429)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence            77889999999999988866666 7789999999999875 67788999999999988542211  23445666777755


Q ss_pred             HHHHHHhcC--CChHHHHHHHHHHHHHHhhcc
Q 038250          398 KLLLLLQVG--CADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       398 ~Ll~ll~~~--~~~~~k~~a~~ll~~l~~~~~  427 (444)
                       ++..|+..  .++.+.+--..+-..+...-.
T Consensus       281 -~l~~L~~rk~~DedL~edl~~L~e~L~~~~k  311 (429)
T cd00256         281 -TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ  311 (429)
T ss_pred             -HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence             55555554  357788877777777766543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.76  E-value=5.4e-09  Score=71.71  Aligned_cols=47  Identities=23%  Similarity=0.493  Sum_probs=40.6

Q ss_pred             CccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           35 NHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      +++.|+||.+...+++.++|||. ||..|+.+|+  +....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLL--KRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH--HTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhc--ccCCCCCcCChhhc
Confidence            45789999999999999999999 9999999999  47789999998774

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.69  E-value=1.3e-08  Score=92.49  Aligned_cols=48  Identities=21%  Similarity=0.416  Sum_probs=40.4

Q ss_pred             CCccccccccccCcCc--------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           34 PNHFRCPISLDLMKDP--------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~P--------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ..+..||||++.+.++        +.++|||.||+.||.+|+  +...+||.||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl--~~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK--KEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH--hcCCCCCCCCCEee
Confidence            4568999999987764        456899999999999999  45679999998775

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.68  E-value=5.8e-09  Score=69.49  Aligned_cols=40  Identities=35%  Similarity=0.810  Sum_probs=33.0

Q ss_pred             ccccccccCc---CceecCCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250           38 RCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGNITCPVTN   79 (444)
Q Consensus        38 ~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~   79 (444)
                      .|+||.+.|.   .++.++|||.|+..||.+|++  .+.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~--~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK--RNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH--HSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH--hCCcCCccC
Confidence            5999999995   456679999999999999993  356999995

...

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.61  E-value=1.3e-08  Score=71.09  Aligned_cols=44  Identities=36%  Similarity=0.847  Sum_probs=32.4

Q ss_pred             ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250           36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTN   79 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~   79 (444)
                      .++|||++..|.+||.. .|||+|++.+|.+|++..+...||+.+
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            48999999999999986 899999999999999545667899943

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.58  E-value=5.3e-08  Score=64.94  Aligned_cols=43  Identities=37%  Similarity=0.858  Sum_probs=37.6

Q ss_pred             ccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250           38 RCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRV   81 (444)
Q Consensus        38 ~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~   81 (444)
                      .|+||.+.+.+|+.+. |||.||..|+.+|+ ..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHH-HhCcCCCCCCCCc
Confidence            4999999998888875 99999999999999 4467889999864

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.55  E-value=5.8e-08  Score=87.98  Aligned_cols=95  Identities=17%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             cccccccCCCCCCCCCCCC-CCCCCCCcCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250            3 LSWKRLRGGRGRRAGKKQP-GVESGGEMELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      .||+.++.+....+..... |    +-++.+++  +.||+|..++++|+.+ +|||+||..||+..+ -...+.||.|..
T Consensus       246 qsWe~Yq~r~~a~~~~~Dqv~----k~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al-~dsDf~CpnC~r  318 (427)
T COG5222         246 QSWEKYQQRTKAVAEIPDQVY----KMQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTAL-LDSDFKCPNCSR  318 (427)
T ss_pred             HHHHHHHHHHHhhhhCchhhh----ccCCCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhh-hhccccCCCccc
Confidence            5899988877665543221 2    33445555  8999999999999999 799999999999877 456789999964


Q ss_pred             -ccCCCCCCccHHHHHHHHHHHHhc
Q 038250           81 -VLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        81 -~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                       .+-.+.+.|+...+..|+.+...+
T Consensus       319 kdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         319 KDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             ccchhhccCccHHHHHHHHHHHHHH
Confidence             333456889988888888877654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=3.5e-05  Score=82.67  Aligned_cols=286  Identities=13%  Similarity=0.098  Sum_probs=168.2

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      +..++..++..+...+..++..|++++...+...+.++..... ...+|.++..+....+..   |.+....++.+|..+
T Consensus       157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l~El  233 (1075)
T KOG2171|consen  157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEALIEL  233 (1075)
T ss_pred             HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHHHHH
Confidence            3445555554443334448999999999998877655555554 467888888885442221   343444555555533


Q ss_pred             cCCChhh-hhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhH---------------------------
Q 038250          203 FPLAGEG-LTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKV---------------------------  252 (444)
Q Consensus       203 l~~~~~~-~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~---------------------------  252 (444)
                      +...+.. +..+  ...|..-..+.++.  +..+|..|...|..++...+.-.                           
T Consensus       234 ~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew  311 (1075)
T KOG2171|consen  234 LESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW  311 (1075)
T ss_pred             HhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence            3333322 1111  12233333333322  34445555544444422211000                           


Q ss_pred             ----------------------HHhhccc---ccHHHHH----HHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250          253 ----------------------NVLLDIE---GAIEPLF----KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV  303 (444)
Q Consensus       253 ----------------------~~i~~~~---g~i~~Lv----~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~  303 (444)
                                            ..++..-   -++|+++    .++.+. +...+++++.+|..++.+..     +...-
T Consensus       312 ~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~-----~~m~~  385 (1075)
T KOG2171|consen  312 SNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCS-----DVMIG  385 (1075)
T ss_pred             ccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH-----HHHHH
Confidence                                  0110011   1333433    334455 67888888888888887753     22222


Q ss_pred             h-cCcHHHHHHHhhccccchHHHHHHHHHHhcCC--hhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHcccc
Q 038250          304 D-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS--DYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNE  379 (444)
Q Consensus       304 ~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~  379 (444)
                      . ..+++.++..|.++++.++-.|+.+++.++.+  ++.++.  .++-.++.|+..+.+. +++++.+|+.+|.+++...
T Consensus       386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~--~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~  463 (1075)
T KOG2171|consen  386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK--HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC  463 (1075)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH--HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence            2 34777788888899999999999999999973  333333  3346677888888764 7899999999999988743


Q ss_pred             ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          380 EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       380 ~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                          ......=.=.+.+.+++.+|....++.+++.++..+.-++...
T Consensus       464 ----~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  464 ----DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence                2333332335666644444444449999999999888877654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.51  E-value=1.3e-06  Score=71.03  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=124.5

Q ss_pred             cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh
Q 038250          259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY  338 (444)
Q Consensus       259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~  338 (444)
                      .+-+..||.-.....+.+.++....-|.|.+.+..    |-..+.+..+++..++.|...++.+++.+++.|.|||-+..
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~----Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~   90 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPI----NYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT   90 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcc----hHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence            35677788888777688999999999999999887    89999999999999999999999999999999999999888


Q ss_pred             hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250          339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL  418 (444)
Q Consensus       339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l  418 (444)
                      +.+.| .+++++|.++..+.+......-.|+.+|..|+..    +...+.+.....++..+.+.-.+. +...+.-|...
T Consensus        91 n~~~I-~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~----~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~f  164 (173)
T KOG4646|consen   91 NAKFI-REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG----ERTERDELLSPAVVRTVQRWRESK-SHDERNLASAF  164 (173)
T ss_pred             HHHHH-HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc----ccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            88888 9999999999988777777788999999999984    344556666666776666655444 55555555555


Q ss_pred             HHHH
Q 038250          419 LKLL  422 (444)
Q Consensus       419 l~~l  422 (444)
                      +..+
T Consensus       165 l~~~  168 (173)
T KOG4646|consen  165 LDKH  168 (173)
T ss_pred             HHhh
Confidence            4433

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=8.1e-08  Score=93.44  Aligned_cols=71  Identities=23%  Similarity=0.462  Sum_probs=60.4

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ....+.+.||||.+.|.+|++++|||+||+.|+..++ . +...||.|+. ... .+.+|..+.++++.+.....
T Consensus         8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~-~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSW-E-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             hhccccccChhhHHHhhcCccccccchHhHHHHHHhc-C-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence            3456779999999999999888999999999999999 3 6789999996 333 77799999999988887654

>smart00184 RING Ring finger

Probab=98.48  E-value=1.5e-07  Score=60.46  Aligned_cols=39  Identities=51%  Similarity=1.048  Sum_probs=35.3

Q ss_pred             cccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250           39 CPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVT   78 (444)
Q Consensus        39 Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c   78 (444)
                      |+||.+...+++.++|||.||..|+.+|+ ..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWL-KSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHH-HhCcCCCCCC
Confidence            89999999999999999999999999999 4566789986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.48  E-value=5.4e-07  Score=84.28  Aligned_cols=61  Identities=16%  Similarity=0.317  Sum_probs=45.8

Q ss_pred             cccccccccc-CcCce---ec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC----CCccHHHHHHH
Q 038250           36 HFRCPISLDL-MKDPV---TL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFE----PIPNHTIRRMI   97 (444)
Q Consensus        36 ~~~Cpic~~~-~~~Pv---~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~----l~~n~~l~~~i   97 (444)
                      +..||+|... +..|-   .+ +|||+||..|+.++| ..+...||.|+.++....    +.++..+.+.|
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~-~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV   72 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV   72 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHh-cCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence            4689999984 44553   22 699999999999988 567789999999887654    55555554444

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.45  E-value=1e-05  Score=78.65  Aligned_cols=247  Identities=13%  Similarity=0.168  Sum_probs=171.5

Q ss_pred             chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHH
Q 038250          161 KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVL  239 (444)
Q Consensus       161 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~  239 (444)
                      .+.|...|++..|+.++.+..     ....++.+|...|..++  ..+|+..++.-| +..++.+-+. ..++.+...+.
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn-----~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~  244 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPN-----LETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAG  244 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHH
Confidence            456677799999999996431     13567888999887543  357888887655 5555544443 35888899999


Q ss_pred             HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc
Q 038250          240 VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ  319 (444)
Q Consensus       240 ~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~  319 (444)
                      +|.++-.++++.+..+ ...|+|..++-..+.. +|...++++-+|.|++.+..  -+.+..|++..+-+-|.-+-.+.+
T Consensus       245 il~~mFKHSeet~~~L-vaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~--~a~qrrmveKr~~EWLF~LA~skD  320 (832)
T KOG3678|consen  245 ILEHMFKHSEETCQRL-VAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGG--QAVQRRMVEKRAAEWLFPLAFSKD  320 (832)
T ss_pred             HHHHHhhhhHHHHHHH-HhhcccchheeecccC-CHHHHHHHHHHhhhhhhhch--hHHHHHHHHhhhhhhhhhhhcchH
Confidence            9999977788888888 5679999998888777 79999999999999998764  346888999888888888877778


Q ss_pred             cchHHHHHHHHHHhcCChhhHHHHhcCCCC---hHHHHH----------------------------HHhhcChhHHHHH
Q 038250          320 RSLCEKALSVLDGLCSSDYGRGDAYNNSLI---FPVIVK----------------------------KILRVSDLATEFA  368 (444)
Q Consensus       320 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~---i~~Lv~----------------------------ll~~~~~~~~~~a  368 (444)
                      +-++-.|+-+...|+...+--..+ ...|.   +++++.                            +|.  +.+....+
T Consensus       321 el~R~~AClAV~vlat~KE~E~~V-rkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLd--S~R~EAq~  397 (832)
T KOG3678|consen  321 ELLRLHACLAVAVLATNKEVEREV-RKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLD--SNRLEAQC  397 (832)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHH-hhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhh--cchhhhhh
Confidence            888999999999999877655555 44442   233332                            222  12222344


Q ss_pred             HHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          369 VSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       369 ~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ++++. +|....-.+......+. +-|+|..|-++..+. ++...+-|...|+.+.+
T Consensus       398 i~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  398 IGAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE  452 (832)
T ss_pred             hHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence            44433 33211001122223333 689999999988855 66666667778888865

>PHA02926 zinc finger-like protein; Provisional

Probab=98.45  E-value=1.6e-07  Score=82.37  Aligned_cols=51  Identities=14%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             CCCccccccccccCcC---------ceecCCcchhcHHHHHHHHHhc----CCCCCCCCCcccC
Q 038250           33 TPNHFRCPISLDLMKD---------PVTLSTGITYDRENIEKWIHED----GNITCPVTNRVLT   83 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~---------Pv~~~cg~~~c~~ci~~~~~~~----~~~~CP~c~~~~~   83 (444)
                      ..++..|+||++...+         ++..+|+|+||..||.+|...+    ....||.||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4556899999998644         3566999999999999999432    1356999998775

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.42  E-value=1.4e-07  Score=87.63  Aligned_cols=68  Identities=16%  Similarity=0.313  Sum_probs=55.4

Q ss_pred             CCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC----CCCccHHHHHHHHHH
Q 038250           31 LTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSF----EPIPNHTIRRMIQDW  100 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~----~l~~n~~l~~~i~~~  100 (444)
                      .++-...+|++|..+|.|+.++ .|=||||+.||.+++  ....+||.|+..+...    .+..+..|+.++..+
T Consensus        10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l--~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYL--EESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHH--HHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            3455678999999999999987 799999999999999  3378999998777544    477777888777543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.42  E-value=2.2e-07  Score=61.68  Aligned_cols=41  Identities=20%  Similarity=0.509  Sum_probs=35.2

Q ss_pred             ccccccccC---cCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250           38 RCPISLDLM---KDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus        38 ~Cpic~~~~---~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      .|++|.+.+   ..|++++|||+||..|+.++.  .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            489999999   467888999999999999977  56678999974

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=4e-05  Score=79.83  Aligned_cols=254  Identities=15%  Similarity=0.179  Sum_probs=152.4

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      +.++..+...+.+.++.+++.|+.++..+.+.+++   .+... .++.+.++|.+   .    ++.++..|+.++. .+.
T Consensus       113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d---~----~~~V~~~a~~~l~-~i~  180 (526)
T PF01602_consen  113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSD---K----DPSVVSAALSLLS-EIK  180 (526)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTH---S----SHHHHHHHHHHHH-HHH
T ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccC---C----cchhHHHHHHHHH-HHc
Confidence            33333333333334788999999999999877554   23333 68888899842   2    6889999999988 442


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      .+++.-..+ -...++.|..++...++-.+.....+|..++...+.....    ...++.+..++++. ++.+.-.++.+
T Consensus       181 ~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i~~l~~~l~s~-~~~V~~e~~~~  254 (526)
T PF01602_consen  181 CNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK----NRIIEPLLNLLQSS-SPSVVYEAIRL  254 (526)
T ss_dssp             CTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH----HHHHHHHHHHhhcc-ccHHHHHHHHH
Confidence            222211100 1233444444455667778888888888775444333311    24567777777765 57777777777


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh-hcChh
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL-RVSDL  363 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~  363 (444)
                      +..+....      .   .-..++++|+.+|.+.++.++-.++..|..++...  ...+ .   .....+..+. +.+..
T Consensus       255 i~~l~~~~------~---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~---~~~~~~~~l~~~~d~~  319 (526)
T PF01602_consen  255 IIKLSPSP------E---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F---NQSLILFFLLYDDDPS  319 (526)
T ss_dssp             HHHHSSSH------H---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G---THHHHHHHHHCSSSHH
T ss_pred             HHHhhcch------H---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h---hhhhhhheecCCCChh
Confidence            77665432      1   33457788888888777778888888888887643  2222 2   2223334444 45667


Q ss_pred             HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ++..++.+|..++.      +++...     ++..|...+...+++..++.+...+..+
T Consensus       320 Ir~~~l~lL~~l~~------~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~l  367 (526)
T PF01602_consen  320 IRKKALDLLYKLAN------ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDL  367 (526)
T ss_dssp             HHHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc------ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence            77888888888876      333333     5666666663332555666666544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=9.4e-05  Score=77.07  Aligned_cols=280  Identities=13%  Similarity=0.099  Sum_probs=194.4

Q ss_pred             CccHHHHHHHHHHHHhcccCCCcCCCCCCCCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc
Q 038250           88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN  167 (444)
Q Consensus        88 ~~n~~l~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~  167 (444)
                      ..+..++++.--+...-...            +++.+.-.+..+...+.+.++..+..|+..|..+..  ++    +++.
T Consensus        53 s~~~~~Krl~yl~l~~~~~~------------~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~----~~~~  114 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHE------------DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PE----MAEP  114 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HH----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhc------------chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cc----hhhH
Confidence            56788888877766654311            233344455666665655688889999999999872  22    2221


Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                       .++.+.++|.+   +    ++.++..|+.++..+...+++   .+... .++.+..+|.+.++.++..|+.++..+ ..
T Consensus       115 -l~~~v~~ll~~---~----~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  115 -LIPDVIKLLSD---P----SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             -HHHHHHHHHHS---S----SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred             -HHHHHHHHhcC---C----chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence             46777778842   2    688999999888855544443   22223 699999999999999999999999999 44


Q ss_pred             chhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250          248 DHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA  326 (444)
Q Consensus       248 ~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a  326 (444)
                      +++. ...+   ...+..|.+++... ++-.+...+..|..++....   ...   -....++.+..+|.+.+..++-.+
T Consensus       182 ~~~~~~~~~---~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~---~~~---~~~~~i~~l~~~l~s~~~~V~~e~  251 (526)
T PF01602_consen  182 NDDSYKSLI---PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEP---EDA---DKNRIIEPLLNLLQSSSPSVVYEA  251 (526)
T ss_dssp             THHHHTTHH---HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSH---HHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhH---HHHHHHhhhccccc-chHHHHHHHHHHHhcccCCh---hhh---hHHHHHHHHHHHhhccccHHHHHH
Confidence            4433 2223   46677777777666 78888888898888876653   111   115688899999998899999999


Q ss_pred             HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      +.++..+.......      ..+++.|++++.+.+..++..++..|..++...        ...+.  .....+..+..+
T Consensus       252 ~~~i~~l~~~~~~~------~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------~~~v~--~~~~~~~~l~~~  315 (526)
T PF01602_consen  252 IRLIIKLSPSPELL------QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--------PPAVF--NQSLILFFLLYD  315 (526)
T ss_dssp             HHHHHHHSSSHHHH------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------HHHHG--THHHHHHHHHCS
T ss_pred             HHHHHHhhcchHHH------HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--------chhhh--hhhhhhheecCC
Confidence            99999998866622      245789999998778889999999999999852        22223  223334455544


Q ss_pred             CChHHHHHHHHHHHHHHh
Q 038250          407 CADKTKEHVSELLKLLNP  424 (444)
Q Consensus       407 ~~~~~k~~a~~ll~~l~~  424 (444)
                      .+..+|..+..+|..+..
T Consensus       316 ~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  316 DDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             SSHHHHHHHHHHHHHH--
T ss_pred             CChhHHHHHHHHHhhccc
Confidence            488899999887766653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=7.6e-05  Score=78.91  Aligned_cols=252  Identities=14%  Similarity=0.133  Sum_probs=177.7

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhh----cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVD----NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS  215 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~----~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~  215 (444)
                      ++...-++.+|+++.+.+|+-...+..    .|-.+.+..+|+..+      ++.++..|+.++. .+..+.+....+++
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~------~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~ 1811 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK------HPKLQILALQVIL-LATANKECVTDLAT 1811 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC------CchHHHHHHHHHH-HHhcccHHHHHHHh
Confidence            346778999999999988865444432    378888999997542      5779999999998 77888888889999


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA---  292 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~---  292 (444)
                      .|.+..|+.+|.+. +..++.+..+|..|++...-.++.+ . .|++.-+..++-...++..+..++..|..|..+.   
T Consensus      1812 ~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~-~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1812 CNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEAL-E-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred             hhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHH-h-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccC
Confidence            99999999999765 7889999999999966555566666 4 6887777766654434555555555555553221   


Q ss_pred             ----------------------------------CC------------------------------C-------------
Q 038250          293 ----------------------------------SA------------------------------T-------------  295 (444)
Q Consensus       293 ----------------------------------~~------------------------------~-------------  295 (444)
                                                        +|                              +             
T Consensus      1889 PrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred             CceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence                                              00                              0             


Q ss_pred             --------------------------------------------------------------------CchhHHHHhcCc
Q 038250          296 --------------------------------------------------------------------EKPIQKFVDMGL  307 (444)
Q Consensus       296 --------------------------------------------------------------------~~~~~~i~~~g~  307 (444)
                                                                                          +.....+-..|-
T Consensus      1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred             hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence                                                                                001111122355


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHH
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAF  387 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  387 (444)
                      +|.++..+...+..+-..|+.+|..|+.+.-...++ .....+..++..|++. .....-|+.+|-.+...   ...+..
T Consensus      2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM-A~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r---~~~eLV 2123 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM-AQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKR---NTGELV 2123 (2235)
T ss_pred             hHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH-hccccchhhHHHHHhc-chHHHHHHHHHHHHHHH---hHHHHH
Confidence            555555554444555578899999999876666666 6667777788877653 22334788888888774   346778


Q ss_pred             HHHHhhChHHHHHHHHhcC
Q 038250          388 AEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       388 ~~~~~~g~l~~Ll~ll~~~  406 (444)
                      .++++.|.|+.|+.+|...
T Consensus      2124 AQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2124 AQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHhccCcHHHHHHHhccc
Confidence            8899999999999999864

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.6e-07  Score=92.01  Aligned_cols=54  Identities=24%  Similarity=0.500  Sum_probs=45.6

Q ss_pred             ccccccccccCcCceecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCCCCCCc
Q 038250           36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~~~l~~   89 (444)
                      +..||||++...-|+.+.|||.||..||.+||..   .+.+.||.|+..+..+++.|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p  242 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP  242 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence            7899999999999999999999999999999932   23578999998887755433

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.35  E-value=1.9e-05  Score=79.80  Aligned_cols=214  Identities=14%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             cccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-----hhhhhcccCCcHHHHHHHHhcCCHH
Q 038250          158 DRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-----EGLTYLGSASSMRCMVWFLKSGDLS  232 (444)
Q Consensus       158 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~  232 (444)
                      ..+.....+...++.++++|....+- ...+++.+.-++.-.. +.....     .++..+-+.-....+..+....+..
T Consensus       315 sklq~~~~e~~~~~~~~ellf~~~sl-~a~~~~~~~i~l~e~~-i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~  392 (678)
T KOG1293|consen  315 SKLQLPQHEEATLKTTTELLFICASL-AASDEKYRLILLNETL-ILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHD  392 (678)
T ss_pred             HhhhhHHhhhhhhhhHHHHHHHHHHH-hhcchhhhHHHhhhhh-hhhhhhhhcchhHHHHHHHHHHHHHHccccccccHH
Confidence            34555666777778888877321000 0012222222222211 111111     2233333333333333333334667


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHH
Q 038250          233 RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLL  312 (444)
Q Consensus       233 ~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv  312 (444)
                      ....|+..+.+++......+.-+ ....++.+||+++..+ +..+...++++|.|+...-.   ..+..+++.|+|+.|.
T Consensus       393 ~~aaa~l~~~s~srsV~aL~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs---~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  393 FVAAALLCLKSFSRSVSALRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFS---NLKSKFLRNNGIDILE  467 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcc---cHHHHHHHcCcHHHHH
Confidence            77777778888854555666666 5678999999999888 67899999999999997754   3799999999999999


Q ss_pred             HHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          313 EMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       313 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      +++.+.+..++..++|+|+++....+...+.. ..--.-..++.+....+..++|.+...|.|+...
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999997665544432 2222344555555667889999999999999885

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=1.6e-05  Score=81.66  Aligned_cols=220  Identities=15%  Similarity=0.139  Sum_probs=169.6

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVS  246 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s  246 (444)
                      .|+.|++-+.+.   +   -.+-++.|+..|.   +.+..+|..++ +.|+++|+..|+.+  ++++...+..++.++.+
T Consensus        23 TI~kLcDRvess---T---L~eDRR~A~rgLK---a~srkYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   23 TIEKLCDRVESS---T---LLEDRRDAVRGLK---AFSRKYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             HHHHHHHHHhhc---c---chhhHHHHHHHHH---HHHHHHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            466666666432   1   2455777777776   33567887776 56699999999876  79999999999999976


Q ss_pred             cch------h----------hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH-hcCcHH
Q 038250          247 SDH------R----------KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV-DMGLVS  309 (444)
Q Consensus       247 ~~~------~----------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~-~~g~v~  309 (444)
                      .++      +          ..+.+....+.|..|+..++.. +..++..+...|.+|-.+..  .+.+..+. -.-+|.
T Consensus        93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~--~e~q~~ll~~P~gIS  169 (970)
T KOG0946|consen   93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRP--TELQDALLVSPMGIS  169 (970)
T ss_pred             cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCC--HHHHHHHHHCchhHH
Confidence            653      1          2233436678899999999988 78999999999999987765  34566654 478999


Q ss_pred             HHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-c---ChhHHHHHHHHHHHHccccccchHH
Q 038250          310 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-V---SDLATEFAVSILWKLCKNEEREEKT  385 (444)
Q Consensus       310 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-~---~~~~~~~a~~~L~~L~~~~~~~~~~  385 (444)
                      .|+.+|.+..+.++..++-.|..|+.+.....+++.=..+...|..++.. +   ...+.+.|+..|-+|-+.+.+    
T Consensus       170 ~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S----  245 (970)
T KOG0946|consen  170 KLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS----  245 (970)
T ss_pred             HHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc----
Confidence            99999999999999999999999998777766665667889999998875 2   336789999999999996544    


Q ss_pred             HHHHHHhhChHHHHHHHHhc
Q 038250          386 AFAEALQVGAFQKLLLLLQV  405 (444)
Q Consensus       386 ~~~~~~~~g~l~~Ll~ll~~  405 (444)
                      +..-..+.+.||.|..+|..
T Consensus       246 NQ~~FrE~~~i~rL~klL~~  265 (970)
T KOG0946|consen  246 NQNFFREGSYIPRLLKLLSV  265 (970)
T ss_pred             hhhHHhccccHHHHHhhcCc
Confidence            44445578999999977654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.33  E-value=4.1e-06  Score=68.14  Aligned_cols=132  Identities=11%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             CCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          216 ASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       216 ~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      -+.+..||.-... .+.+.+++...-|.|+ +-++-|-..+ ....++...|..|... +...++.+.+.|.|+|-+.. 
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANF-AYDP~Nys~L-rql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~-   90 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANF-AYDPINYSHL-RQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKT-   90 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccCcchHHHH-HHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChH-
Confidence            4557777775554 4899999999999999 6788888888 6789999999999998 88999999999999999987 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHhh
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                         |++.|++++++|.++..++++.+.++..|+.+|..|+-..- .+..+     .-|.+|..+.+
T Consensus        91 ---n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-----l~p~Vv~~v~r  148 (173)
T KOG4646|consen   91 ---NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-----LSPAVVRTVQR  148 (173)
T ss_pred             ---HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-----ccHHHHHHHHH
Confidence               99999999999999999999999999999999999986433 23333     34566666654

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.2e-07  Score=88.42  Aligned_cols=71  Identities=21%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC-CCCCCccHHHHHHHHHHH
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT-SFEPIPNHTIRRMIQDWC  101 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~-~~~l~~n~~l~~~i~~~~  101 (444)
                      ...+..++.||||+.+++.-+++ .|+|.||..||..-+ ..++..||.|++.+. .+.+.++...-.+|...-
T Consensus        37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~-r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKAL-RSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHH-HhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            44456679999999999999988 699999999999988 678899999998875 457888877777775543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=5.9e-07  Score=80.85  Aligned_cols=51  Identities=14%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHH-HHHhcCCCCCCCCCcccCCC
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEK-WIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~-~~~~~~~~~CP~c~~~~~~~   85 (444)
                      ..++.|+||.+.+.+|..++|||.||..||.. |- .+..-.||.||+.....
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t-~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWT-KKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHH-hhccccCchhhhhccch
Confidence            46799999999999999999999999999999 65 34445699999866543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.26  E-value=1.1e-06  Score=57.38  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      +++++..+++.|++|.|+.+|++++.++++.|+++|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999995

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.7e-07  Score=93.91  Aligned_cols=56  Identities=18%  Similarity=0.290  Sum_probs=49.1

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      +.+-++||+|..-.+|-|++.|||.||..|++..+ ......||.|+..|...++.+
T Consensus       640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~-etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRY-ETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHH-HHhcCCCCCCCCCCCcccccc
Confidence            45558999999999999999999999999999988 666788999999998877643

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.24  E-value=0.00042  Score=67.03  Aligned_cols=227  Identities=13%  Similarity=0.129  Sum_probs=164.2

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      +.+...-|+++|. .+-..++.|..++.++++..++..|.++  +-.++-+...+++-| +.++...+.+ ...+.|+.|
T Consensus       170 ~~~~~~~~~rcLQ-~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL-tFn~~~ae~~-~~~~li~~L  246 (442)
T KOG2759|consen  170 NNDYIQFAARCLQ-TLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL-TFNPHAAEKL-KRFDLIQDL  246 (442)
T ss_pred             CCchHHHHHHHHH-HHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh-hcCHHHHHHH-hhccHHHHH
Confidence            3556667777887 5556789999999999999999999543  678888999999999 6788888888 667999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhc---cccchHHHH-------HHHHHH
Q 038250          266 FKLIKEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVD---AQRSLCEKA-------LSVLDG  332 (444)
Q Consensus       266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~---~~~~~~~~a-------~~~L~~  332 (444)
                      ++++++...+.+.+..+.+++|+....+..   ......++..++.+. ++.|..   .|+++.+..       -.-...
T Consensus       247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~  325 (442)
T KOG2759|consen  247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQD  325 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            999998867889999999999998776200   013455566555544 455542   244444332       233334


Q ss_pred             hcCChhhHHHHh-------------------------cCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHH
Q 038250          333 LCSSDYGRGDAY-------------------------NNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTA  386 (444)
Q Consensus       333 L~~~~~~~~~i~-------------------------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~  386 (444)
                      |++.++...++.                         .+-..+..|+++|..+ ++..-..|+.=+....++.|.    .
T Consensus       326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~----g  401 (442)
T KOG2759|consen  326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE----G  401 (442)
T ss_pred             hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch----H
Confidence            455444333331                         1112788999999876 467778899889999998765    4


Q ss_pred             HHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       387 ~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +..+.+-|+=+.++++|... ++++|-.|.-+++.+-
T Consensus       402 k~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  402 KAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLM  437 (442)
T ss_pred             hHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence            55555789999999999999 9999999988666553

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.21  E-value=1.5e-06  Score=56.73  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      ++++..+++.|+||+|+++|.+++..+++.|+++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.19  E-value=9.5e-05  Score=74.96  Aligned_cols=254  Identities=11%  Similarity=0.075  Sum_probs=158.3

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS  218 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~  218 (444)
                      |......|+..+..++..-..-|.-+-..+++.+||++|   .++    +..++..++++|.+++-.....|..+.+.|+
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp----~~~i~~~~lgai~NlVmefs~~kskfl~~ng  462 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDP----EIMIMGITLGAICNLVMEFSNLKSKFLRNNG  462 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCc----chhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence            666777778888877765555555666778999999999   344    5789999999999555556677889999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      |..+.+++.+.+..++..+.|+|+++.-.+++-...--...=.-..++.+.+++ ++.+++.+...|+||.-+..   +.
T Consensus       463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~---~s  538 (678)
T KOG1293|consen  463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSR---KS  538 (678)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcH---HH
Confidence            999999999999999999999999996554432222112212334566667777 89999999999999987743   24


Q ss_pred             hHHHHhc--CcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--------cChhHHHH
Q 038250          299 IQKFVDM--GLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--------VSDLATEF  367 (444)
Q Consensus       299 ~~~i~~~--g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--------~~~~~~~~  367 (444)
                      ...+++.  ..+....-.++ .+...+.......+.++....+.+..- .-.|..+.++..-..        ......-+
T Consensus       539 vdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~-am~~~fk~lvl~~e~~~n~~q~s~~~qls~~  617 (678)
T KOG1293|consen  539 VDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKK-AMEGIFKILVLLAEVNENKKQLSIEQQLSLN  617 (678)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            5555542  23333333333 222233333333344444333333322 223545544432111        11223346


Q ss_pred             HHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcC
Q 038250          368 AVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVG  406 (444)
Q Consensus       368 a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~  406 (444)
                      +.+.+.++.....+  .+..+.+. ..|+....+....++
T Consensus       618 ~~~~iinl~~~~s~--s~~dr~~~~~n~i~e~~~k~~~sd  655 (678)
T KOG1293|consen  618 IMSEIINLTTTDSS--SNFDRSNLKLNCIWELNNKLWNSD  655 (678)
T ss_pred             HHHHHHhccCCCCC--cccchhhccccceechhhhcccch
Confidence            66666666554322  23334444 566666666666665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00044  Score=64.32  Aligned_cols=273  Identities=9%  Similarity=0.044  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHh-hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV-DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      ..+++..|.+.    ++.++..|+..+-.+...  ..+...- +.-.++.|.+++..   .    ++  .+.|+.+|. |
T Consensus         5 l~elv~ll~~~----sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~---~----~~--~~~a~~alV-n   68 (353)
T KOG2973|consen    5 LVELVELLHSL----SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD---L----DP--AEPAATALV-N   68 (353)
T ss_pred             HHHHHHHhccC----ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC---c----cc--ccHHHHHHH-H
Confidence            44677777776    788888898888888765  2222222 22467778888832   2    22  567888899 8


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-----cccHHHHHHHhcCCCC-hH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-----EGAIEPLFKLIKEPIC-PT  276 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-----~g~i~~Lv~ll~~~~~-~~  276 (444)
                      ++.++.-++.+... .+..+++.+.......-...|.+|.||+..++.....+...     .|.+...+.....+.+ ..
T Consensus        69 lsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a  147 (353)
T KOG2973|consen   69 LSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYA  147 (353)
T ss_pred             HHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccccc
Confidence            99888888877766 88888888877766677788999999955444444433222     2444444444444422 23


Q ss_pred             HHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHH-hhccccch-HHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250          277 ATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEM-LVDAQRSL-CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV  354 (444)
Q Consensus       277 ~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~~-~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  354 (444)
                      -....+-.+.||++...    .|..+.+...++.=.-+ +.+.+..+ +...+++|.|.|.....+..+ .+ ..+..|.
T Consensus       148 ~f~ylA~vf~nls~~~~----gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~l-L~-e~~~lLp  221 (353)
T KOG2973|consen  148 EFHYLAPVFANLSQFEA----GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVL-LD-ESINLLP  221 (353)
T ss_pred             chhHHHHHHHHHhhhhh----hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHH-hc-chHHHHH
Confidence            45667788889999876    78888776633321111 12334444 466789999999877777777 33 3333333


Q ss_pred             HHHhh-----------------------------cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc
Q 038250          355 KKILR-----------------------------VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV  405 (444)
Q Consensus       355 ~ll~~-----------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~  405 (444)
                      .+|.-                             .++.++..-+.+|..||.-     ...+..+..-|+-+.+-++-..
T Consensus       222 ~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-----~~GRe~lR~kgvYpilRElhk~  296 (353)
T KOG2973|consen  222 AILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-----RAGREVLRSKGVYPILRELHKW  296 (353)
T ss_pred             HHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-----hHhHHHHHhcCchHHHHHHhcC
Confidence            33320                             2345678888999999982     3334444455555555445555


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 038250          406 GCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       406 ~~~~~~k~~a~~ll~~l~~  424 (444)
                      ..++..++.+-.+.+++.+
T Consensus       297 e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  297 EEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCcHHHHHHHHHHHHHHHh
Confidence            5578999999999999986

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0028  Score=61.72  Aligned_cols=245  Identities=13%  Similarity=0.118  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh------h----hhhh
Q 038250          143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG------E----GLTY  212 (444)
Q Consensus       143 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~------~----~~~~  212 (444)
                      ....++.+.-++.. |.--..+++.++|+.|+.+|.   +.    +.++....+..|. -+...+      +    --..
T Consensus       101 Lhd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLg---He----NtDI~iavvdLLq-ELTD~Dv~~es~egAevLida  171 (536)
T KOG2734|consen  101 LHDIIQEMHVLATM-PDLYPILVELNAVQSLLELLG---HE----NTDIAIAVVDLLQ-ELTDEDVLYESEEGAEVLIDA  171 (536)
T ss_pred             HHHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhc---CC----CchhHHHHHHHHH-HhhhhcccccccccHHHHHHH
Confidence            34456667667654 555668899999999999994   22    5777777788777 333211      1    2346


Q ss_pred             cccCCcHHHHHHHHhcCCHH------HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHH
Q 038250          213 LGSASSMRCMVWFLKSGDLS------RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVV  285 (444)
Q Consensus       213 i~~~g~i~~Lv~lL~~~~~~------~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL  285 (444)
                      +++.++++.||+-+..=+..      ...+....+-|+....++....++ ..|.+..|+.-+... .-..-+..|...|
T Consensus       172 Lvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~-e~~ll~WLL~rl~~k~~f~aNk~YasEiL  250 (536)
T KOG2734|consen  172 LVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIV-EQGLLSWLLKRLKGKAAFDANKQYASEIL  250 (536)
T ss_pred             HHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHH-HhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence            77899999999988653333      345677788899888888888884 458888887744332 2345677888888


Q ss_pred             HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc----c-----ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250          286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVD----A-----QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK  356 (444)
Q Consensus       286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~----~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l  356 (444)
                      .-+-.+..   +|+.......+|..|++-|..    +     +.+.-++-...|..+...++++..+ ..+.|+....-+
T Consensus       251 aillq~s~---e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~F-l~~EGlqLm~Lm  326 (536)
T KOG2734|consen  251 AILLQNSD---ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERF-LKGEGLQLMNLM  326 (536)
T ss_pred             HHHhccCc---hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhh-hccccHHHHHHH
Confidence            87776654   588888999999999998861    1     3456788889999999999999999 667777776554


Q ss_pred             HhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh
Q 038250          357 ILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ  404 (444)
Q Consensus       357 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~  404 (444)
                      ++. ....+..|+++|-......++  .......++.+++..+..+.-
T Consensus       327 lr~-Kk~sr~SalkvLd~am~g~~g--t~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  327 LRE-KKVSRGSALKVLDHAMFGPEG--TPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHH-HHHhhhhHHHHHHHHHhCCCc--hHHHHHHHHHHhHHHHHHHHh
Confidence            543 555678899999888775442  356666777788877777443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.8e-06  Score=76.69  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=47.6

Q ss_pred             CCCCCcCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           24 ESGGEMELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        24 ~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ++|+........+-.||+|++.-..|.+. +|||.||..||..-+-....++||.|+.+..
T Consensus       227 ~ap~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  227 RAPKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCCCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34445555556678999999999999998 6999999999998662345689999997664

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.09  E-value=4.2e-05  Score=74.42  Aligned_cols=211  Identities=15%  Similarity=0.174  Sum_probs=150.7

Q ss_pred             hhcccCCcHHHHHHHHhcCCHHH--HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250          211 TYLGSASSMRCMVWFLKSGDLSR--RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT  288 (444)
Q Consensus       211 ~~i~~~g~i~~Lv~lL~~~~~~~--~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  288 (444)
                      ..|...|++..|+.++.+.+.+.  +..|+..|..+.  ..+|++.++. -| +..++.+.+...-++..+..++.|.++
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            45667899999999999987555  889999999994  4567887743 24 444555545443478999999999999


Q ss_pred             hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--ChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      -.+.+   +.+..++++|+++.++--.+..++.+..+|+-+|.|++-  +.+.+..+ ++..+-+-|.-+-.+.++..+-
T Consensus       250 FKHSe---et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrm-veKr~~EWLF~LA~skDel~R~  325 (832)
T KOG3678|consen  250 FKHSE---ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRM-VEKRAAEWLFPLAFSKDELLRL  325 (832)
T ss_pred             hhhhH---HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHH-HHhhhhhhhhhhhcchHHHHHH
Confidence            99875   689999999999999988888889999999999999885  45677788 6767777777766666777888


Q ss_pred             HHHHHHHHHccccccchHHHHHHHHhhCh---HHHHHHHHhcCCC---------hHHHHHHHHHHHHHHhhccCCCCCCc
Q 038250          367 FAVSILWKLCKNEEREEKTAFAEALQVGA---FQKLLLLLQVGCA---------DKTKEHVSELLKLLNPHRARLECIDS  434 (444)
Q Consensus       367 ~a~~~L~~L~~~~~~~~~~~~~~~~~~g~---l~~Ll~ll~~~~~---------~~~k~~a~~ll~~l~~~~~~~~~~~~  434 (444)
                      +|+-+...|+.+     .+.-.++.+.|-   +++|+..+..+.-         .+.++---+++-++...+....||++
T Consensus       326 ~AClAV~vlat~-----KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~A  400 (832)
T KOG3678|consen  326 HACLAVAVLATN-----KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGA  400 (832)
T ss_pred             HHHHHHhhhhhh-----hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHH
Confidence            999998888884     445555555554   4455554443310         11222233455555545545556654

>PF05536 Neurochondrin: Neurochondrin

Probab=98.08  E-value=0.00013  Score=75.50  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=122.4

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCC------ChHHHHHHHHHHHH
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPI------CPTATKASLVVVYR  287 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~------~~~~~~~a~~aL~~  287 (444)
                      ..+...+.+|++.+++-|-.+...+.++...++.   .++.|... =+...|-+||+++.      ....+.-|+..|..
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3567788899988888888888889999765553   23345343 34789999999742      24567888888999


Q ss_pred             HhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          288 TITSASATEKPIQKFVDMGLVSLLLEMLVDAQR-SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       288 L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      .|..++  -..-..+++  -||.|++++...+. .+...|+.+|..++.+++|+..+ .+.|+|+.|++.+.+ .+...+
T Consensus        84 f~~~~~--~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aL-l~~g~v~~L~ei~~~-~~~~~E  157 (543)
T PF05536_consen   84 FCRDPE--LASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKAL-LESGAVPALCEIIPN-QSFQME  157 (543)
T ss_pred             HcCChh--hhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHH-HhcCCHHHHHHHHHh-CcchHH
Confidence            998664  112344554  69999999988776 99999999999999999999999 888999999998876 667789


Q ss_pred             HHHHHHHHHccc
Q 038250          367 FAVSILWKLCKN  378 (444)
Q Consensus       367 ~a~~~L~~L~~~  378 (444)
                      .|..+|.+++..
T Consensus       158 ~Al~lL~~Lls~  169 (543)
T PF05536_consen  158 IALNLLLNLLSR  169 (543)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998874

>TIGR02270 conserved hypothetical protein

Probab=98.08  E-value=0.00088  Score=66.86  Aligned_cols=222  Identities=12%  Similarity=-0.006  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|...   .+.++...++..+.  ..+++.         ++..|+..|.+   .    +..++..+..+|.  
T Consensus        55 a~~~L~~aL~~d---~~~ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d---~----~~~vr~aaa~ALg--  111 (410)
T TIGR02270        55 ATELLVSALAEA---DEPGRVACAALALL--AQEDAL---------DLRSVLAVLQA---G----PEGLCAGIQAALG--  111 (410)
T ss_pred             HHHHHHHHHhhC---CChhHHHHHHHHHh--ccCChH---------HHHHHHHHhcC---C----CHHHHHHHHHHHh--
Confidence            455666766543   24445444444432  222221         36777777742   2    4557777777776  


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                               .+...+..+.|+.+|++.++.++..++.++...            . ....+.|..+|++. ++.++..|+
T Consensus       112 ---------~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r------------~-~~~~~~L~~~L~d~-d~~Vra~A~  168 (410)
T TIGR02270       112 ---------WLGGRQAEPWLEPLLAASEPPGRAIGLAALGAH------------R-HDPGPALEAALTHE-DALVRAAAL  168 (410)
T ss_pred             ---------cCCchHHHHHHHHHhcCCChHHHHHHHHHHHhh------------c-cChHHHHHHHhcCC-CHHHHHHHH
Confidence                     234456677777777777777776666555441            1 12345666777666 677777777


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH---hcCC------------
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA---YNNS------------  347 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~------------  347 (444)
                      .+|..+-...              +++.|...+.+.++.++..|+..|..+-. ++.-..+   ..+.            
T Consensus       169 raLG~l~~~~--------------a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~l  233 (410)
T TIGR02270       169 RALGELPRRL--------------SESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLL  233 (410)
T ss_pred             HHHHhhcccc--------------chHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHH
Confidence            7777665432              45556666777777777777777766533 2211111   0111            


Q ss_pred             ------CChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250          348 ------LIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL  421 (444)
Q Consensus       348 ------g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~  421 (444)
                            .+++.|..++..  +.++..++.+|..+-.               ..+++.|+..+...   ..++.|...++.
T Consensus       234 al~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~---~~aR~A~eA~~~  293 (410)
T TIGR02270       234 AVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD---------------VEAAPWCLEAMREP---PWARLAGEAFSL  293 (410)
T ss_pred             HhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC---------------cchHHHHHHHhcCc---HHHHHHHHHHHH
Confidence                  223333333322  2244555555544443               57888999988755   488899888888


Q ss_pred             HHhh
Q 038250          422 LNPH  425 (444)
Q Consensus       422 l~~~  425 (444)
                      +...
T Consensus       294 ItG~  297 (410)
T TIGR02270       294 ITGM  297 (410)
T ss_pred             hhCC
Confidence            8763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.07  E-value=0.00029  Score=69.39  Aligned_cols=247  Identities=13%  Similarity=0.089  Sum_probs=172.9

Q ss_pred             HHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh
Q 038250          148 AKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK  227 (444)
Q Consensus       148 ~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~  227 (444)
                      ..|..+-++.+.-+..+.-.-..+.+..++-  +     ++.+++..+.++++ .+-.+++.-..+.+.+.--.++.-|.
T Consensus         5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~-----~~~~vraa~yRilR-y~i~d~~~l~~~~~l~id~~ii~SL~   76 (371)
T PF14664_consen    5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL--S-----DSKEVRAAGYRILR-YLISDEESLQILLKLHIDIFIIRSLD   76 (371)
T ss_pred             HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC--C-----CcHHHHHHHHHHHH-HHHcCHHHHHHHHHcCCchhhHhhhc
Confidence            4455566666666666665555666665441  1     14889999999999 55566677777777776666666666


Q ss_pred             cC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc
Q 038250          228 SG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM  305 (444)
Q Consensus       228 ~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~  305 (444)
                      .+  +..-|++|.+.++.+.... +....+  ..|++..+|.+.++. +...+..|+.+|..|+..+      ...++.+
T Consensus        77 ~~~~~~~ER~QALkliR~~l~~~-~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~------P~lv~~~  146 (371)
T PF14664_consen   77 RDNKNDVEREQALKLIRAFLEIK-KGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN------PELVAEC  146 (371)
T ss_pred             ccCCChHHHHHHHHHHHHHHHhc-CCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC------HHHHHHc
Confidence            54  5778899999999996442 334445  359999999999997 6789999999999999874      6778899


Q ss_pred             CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-------Ch--hHHHHHHHHHHHHc
Q 038250          306 GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-------SD--LATEFAVSILWKLC  376 (444)
Q Consensus       306 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~--~~~~~a~~~L~~L~  376 (444)
                      ||+..|++.+.++..++.+..+.++..+-.++..|.-+ ...--++.++.-+...       +.  ..-+.+..++..+-
T Consensus       147 gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl-~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~L  225 (371)
T PF14664_consen  147 GGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL-RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLL  225 (371)
T ss_pred             CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh-cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999876668999999999999999888877 3333455555544332       11  12244445554444


Q ss_pred             cccccchHHHHHHHH--hhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250          377 KNEEREEKTAFAEAL--QVGAFQKLLLLLQVGCADKTKEHVSELL  419 (444)
Q Consensus       377 ~~~~~~~~~~~~~~~--~~g~l~~Ll~ll~~~~~~~~k~~a~~ll  419 (444)
                      + +|+|    .....  +..++..|+..|+.. .+++|+....++
T Consensus       226 r-sW~G----Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll  264 (371)
T PF14664_consen  226 R-SWPG----LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLL  264 (371)
T ss_pred             h-cCCc----eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            3 2322    22222  225788899999888 778888877643

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=4.1e-06  Score=62.13  Aligned_cols=40  Identities=28%  Similarity=0.670  Sum_probs=31.8

Q ss_pred             ccccccccCcCc------------ee-cCCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250           38 RCPISLDLMKDP------------VT-LSTGITYDRENIEKWIHEDGNITCPVTN   79 (444)
Q Consensus        38 ~Cpic~~~~~~P------------v~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~   79 (444)
                      .|+||++.|.+|            +. ..|||.|...||.+|+  +...+||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL--KQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH--TTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH--hcCCcCCCCC
Confidence            499999999433            33 3899999999999999  5555999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PTZ00429 beta-adaptin; Provisional

Probab=98.00  E-value=0.0011  Score=70.77  Aligned_cols=247  Identities=12%  Similarity=0.096  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.+.++-..|.+.    +...+..|++.+-.....+.+.      ..+.+-+++++.+   .    |.+++.-.--.|..
T Consensus        32 ge~~ELr~~L~s~----~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S---~----d~elKKLvYLYL~~   94 (746)
T PTZ00429         32 GEGAELQNDLNGT----DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS---T----DLELKKLVYLYVLS   94 (746)
T ss_pred             chHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC---C----CHHHHHHHHHHHHH
Confidence            4566677777654    6677788887666554433211      1244555565532   1    45555555444442


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      ....+++. ..    -++..|.+-+.+.++.+|-.|.++|.++  ..++..+.      .++++.+.+.+. ++.+++.|
T Consensus        95 ya~~~pel-al----LaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~------l~~~lkk~L~D~-~pYVRKtA  160 (746)
T PTZ00429         95 TARLQPEK-AL----LAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEY------TLEPLRRAVADP-DPYVRKTA  160 (746)
T ss_pred             HcccChHH-HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHH------HHHHHHHHhcCC-CHHHHHHH
Confidence            22222221 12    2377788888888999999999999988  23444443      367788888887 89999999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS  361 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~  361 (444)
                      +-++..+-...      ...+.+.|.++.|.++|.+.++.++-+|+.+|..+.......-.+  ..+.+..|+..+...+
T Consensus       161 alai~Kly~~~------pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~  232 (746)
T PTZ00429        161 AMGLGKLFHDD------MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECN  232 (746)
T ss_pred             HHHHHHHHhhC------cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCC
Confidence            99999997654      334556789999999999999999999999999997643222222  1234455555555556


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      +-.|-..+.+|   +...|.. .+..     ...+..+...|++. ++.+.-.|++
T Consensus       233 EW~Qi~IL~lL---~~y~P~~-~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik  278 (746)
T PTZ00429        233 EWGQLYILELL---AAQRPSD-KESA-----ETLLTRVLPRMSHQ-NPAVVMGAIK  278 (746)
T ss_pred             hHHHHHHHHHH---HhcCCCC-cHHH-----HHHHHHHHHHhcCC-CHHHHHHHHH
Confidence            65665555554   3343332 1111     23445555555555 4444434333

>PF05536 Neurochondrin: Neurochondrin

Probab=97.99  E-value=0.00071  Score=70.19  Aligned_cols=241  Identities=15%  Similarity=0.073  Sum_probs=151.9

Q ss_pred             hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh---hhhhcccCCcHHHHHHHHhcC-------CHHHHHHHHH
Q 038250          170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE---GLTYLGSASSMRCMVWFLKSG-------DLSRRRNAVL  239 (444)
Q Consensus       170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~  239 (444)
                      +..-+.+|+..       +-+-+-.++..+...+..++.   .+..|.++=+.+.|-++|+++       ....+.-|+.
T Consensus         7 l~~c~~lL~~~-------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs   79 (543)
T PF05536_consen    7 LEKCLSLLKSA-------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS   79 (543)
T ss_pred             HHHHHHHhccC-------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence            44556677432       222345566666655555553   234566777789999999873       3556677999


Q ss_pred             HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc
Q 038250          240 VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ  319 (444)
Q Consensus       240 ~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~  319 (444)
                      +|..++ .+++.+..= ...+-||.|++.+.+..+.+....+..+|..++.+++    .+..+++.|+|+.|.+.+.+ .
T Consensus        80 vL~~f~-~~~~~a~~~-~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~----G~~aLl~~g~v~~L~ei~~~-~  152 (543)
T PF05536_consen   80 VLAAFC-RDPELASSP-QMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE----GAKALLESGAVPALCEIIPN-Q  152 (543)
T ss_pred             HHHHHc-CChhhhcCH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH----hHHHHHhcCCHHHHHHHHHh-C
Confidence            999995 466554222 2247799999999988444899999999999998876    89999999999999999987 5


Q ss_pred             cchHHHHHHHHHHhcCChhhHHHHhcCC----CChHHHHHHHhhcChhHHHHHHHHHHHHccccccc-hHHHHHHHHhhC
Q 038250          320 RSLCEKALSVLDGLCSSDYGRGDAYNNS----LIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE-EKTAFAEALQVG  394 (444)
Q Consensus       320 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~----g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~g  394 (444)
                      +...+.|+.+|.+++.... ....-.+.    ..++.+-..+.......+=..+..|..+-...+.. .......---..
T Consensus       153 ~~~~E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~  231 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD  231 (543)
T ss_pred             cchHHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence            6678999999999886433 11110111    22333333333333334445566666655543200 000001111233


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          395 AFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..-|..+|++..++..|..|..+...+-..
T Consensus       232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  232 LRKGLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4455666888887777777776655544433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=5.2e-06  Score=81.17  Aligned_cols=72  Identities=17%  Similarity=0.319  Sum_probs=55.7

Q ss_pred             cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC-----CCccHHHHHHHHHHHH
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE-----PIPNHTIRRMIQDWCV  102 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~-----l~~n~~l~~~i~~~~~  102 (444)
                      .+..+..+|-|.||...+.+||+++|||+||..||.+..  .....||.|+..+....     ..+|.....++..|..
T Consensus        77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~l--d~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~  153 (398)
T KOG4159|consen   77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSL--DQETECPLCRDELVELPALEQALSLNRLLCKLITKFLE  153 (398)
T ss_pred             cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHh--ccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            345568889999999999999999999999999999977  46678999998886431     2224555566665554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00067  Score=73.13  Aligned_cols=182  Identities=15%  Similarity=0.093  Sum_probs=126.7

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      -.++.+-.+|.+.++.-|..|..+|..++.+..+.-...  -..+++..+..|+++ +|.++-+|+.+|..++.+-.  +
T Consensus       348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~--l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~--p  422 (1075)
T KOG2171|consen  348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN--LPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQ--P  422 (1075)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH--HHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhc--H
Confidence            346667777889999999999999999976665443333  246777777888888 89999999999999998854  2


Q ss_pred             chhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHH-----HHhhcChhHHHHHHH
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK-----KILRVSDLATEFAVS  370 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-----ll~~~~~~~~~~a~~  370 (444)
                       ....--..-.++.|+..+.+. +..++.+|+.+|-|++..-. +..+   .+.++.|++     ++.++++.+++.++.
T Consensus       423 -~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l---~pYLd~lm~~~l~~L~~~~~~~v~e~vvt  497 (1075)
T KOG2171|consen  423 -EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSIL---EPYLDGLMEKKLLLLLQSSKPYVQEQAVT  497 (1075)
T ss_pred             -HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHH---HHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence             233333445777899999765 67899999999999986322 2222   133444444     334568899999999


Q ss_pred             HHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHH
Q 038250          371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKE  413 (444)
Q Consensus       371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~  413 (444)
                      +++.++..     .+..-.-.=.-.+|.|..+|++......|.
T Consensus       498 aIasvA~A-----A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~  535 (1075)
T KOG2171|consen  498 AIASVADA-----AQEKFIPYFDRLMPLLKNFLQNADDKDLRE  535 (1075)
T ss_pred             HHHHHHHH-----HhhhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence            99999873     111111113566788888888884344443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.89  E-value=0.0016  Score=63.10  Aligned_cols=231  Identities=9%  Similarity=0.043  Sum_probs=166.1

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      .+.+.+.-|+..|..+... ++.|..++.++++..|+..|.+. ..    +.++|...+-++. .++-++..-+.+...+
T Consensus       169 ~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~-~~----~~QlQYqsifciW-lLtFn~~~ae~~~~~~  241 (442)
T KOG2759|consen  169 TNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILAST-KC----GFQLQYQSIFCIW-LLTFNPHAAEKLKRFD  241 (442)
T ss_pred             CCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhcc-Cc----chhHHHHHHHHHH-HhhcCHHHHHHHhhcc
Confidence            3566788889999999987 56999999999999999999532 22    5889999988888 8888887777777789


Q ss_pred             cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcch------hhHHHhhcccccHHHHHHHhcCC--CChHHHHHHHHHH---
Q 038250          218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDH------RKVNVLLDIEGAIEPLFKLIKEP--ICPTATKASLVVV---  285 (444)
Q Consensus       218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~------~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a~~aL---  285 (444)
                      .|+.|+++++.. ...+-.-.+.++.|+.+..+      +.+..+ .. +.++.-++.|+..  .+++.....-..-   
T Consensus       242 li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m-v~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L  319 (442)
T KOG2759|consen  242 LIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM-VL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKL  319 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-Hh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            999999999876 46677778999999986663      344455 43 5667777777654  2333333222211   


Q ss_pred             ----HHHhcCCC-----------------CC---CchhHHHHhc--CcHHHHHHHhhcc-ccchHHHHHHHHHHhcC-Ch
Q 038250          286 ----YRTITSAS-----------------AT---EKPIQKFVDM--GLVSLLLEMLVDA-QRSLCEKALSVLDGLCS-SD  337 (444)
Q Consensus       286 ----~~L~~~~~-----------------~~---~~~~~~i~~~--g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~-~~  337 (444)
                          -.|++.++                 +.   .+|...+-+.  ..+..|+++|... ++.+.--|+.=+..... .+
T Consensus       320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP  399 (442)
T KOG2759|consen  320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP  399 (442)
T ss_pred             HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence                12222210                 00   2466666654  4789999999855 56665556666666654 67


Q ss_pred             hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      +++..+ .+.||=+.++++|...++.++.+|+.++..|-.+
T Consensus       400 ~gk~vv-~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  400 EGKAVV-EKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             hHhHHH-HHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            777777 8899999999999989999999999998877553

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=0.00075  Score=71.82  Aligned_cols=184  Identities=10%  Similarity=0.009  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250          142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC  221 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~  221 (444)
                      .+.+|+..|.++..-++=....-..-|+.|-+++||.+.       ..+++-.-+-+=..+++.++..+..+++.++-..
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-------a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~Y  558 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-------ARELRPILVFIWAKILAVDPSCQADLVKENGYKY  558 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-------hHhhhhhHHHHHHHHHhcCchhHHHHHhccCcee
Confidence            455666666666655544444455669999999999653       2444433333334577888888888888888888


Q ss_pred             HHHHHhc-C--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          222 MVWFLKS-G--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       222 Lv~lL~~-~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      .++.|.. +  +++-|..|+.+|..+..+.....+.. -..+.|..-+..|.++..+-.+...+-+|..|-.+-+   ++
T Consensus       559 F~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ac-l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~---~A  634 (1387)
T KOG1517|consen  559 FLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKAC-LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD---EA  634 (1387)
T ss_pred             EEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHh-ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---hh
Confidence            8888876 3  46889999999999977766666655 4567788777888875357788888989999987764   56


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  336 (444)
                      +-.=++.++.+.|+.+|++.-++++..|+-+|..+...
T Consensus       635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence            66668899999999999999999999999999988874

>PTZ00429 beta-adaptin; Provisional

Probab=97.85  E-value=0.0096  Score=63.85  Aligned_cols=255  Identities=12%  Similarity=0.081  Sum_probs=159.3

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..+++.+.+.    |.+.++-.-..|...++.+++..  +.   ++..|.+=+   .    +.++.++..|+++|. .+.
T Consensus        71 ~dVvk~~~S~----d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KDl---~----d~Np~IRaLALRtLs-~Ir  133 (746)
T PTZ00429         71 VDVVKLAPST----DLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQDT---T----NSSPVVRALAVRTMM-CIR  133 (746)
T ss_pred             HHHHHHhCCC----CHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHHc---C----CCCHHHHHHHHHHHH-cCC
Confidence            3444544433    66666666666666665544310  00   122222222   2    237899999999998 332


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      . ++.-     .-.++.+.+.|.+.++.+|..|+.++.+|-..+++   .+ ...|.++.|.++|.+. ++.++.+|+.+
T Consensus       134 ~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv-~~~~~~~~L~~LL~D~-dp~Vv~nAl~a  202 (746)
T PTZ00429        134 V-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF-YQQDFKKDLVELLNDN-NPVVASNAAAI  202 (746)
T ss_pred             c-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc-cccchHHHHHHHhcCC-CccHHHHHHHH
Confidence            2 1111     12356677778888999999999999999444443   44 4468999999999887 89999999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA  364 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  364 (444)
                      |..+.....    .. .-...+.+..|+..|.+.++-.+-..+.+|....  +......   ...+..+...|++.++.+
T Consensus       203 L~eI~~~~~----~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AV  272 (746)
T PTZ00429        203 VCEVNDYGS----EK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAV  272 (746)
T ss_pred             HHHHHHhCc----hh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHH
Confidence            999986653    22 2234556777788887767767776777775432  2222222   134666777777778888


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      .-.|++++..+....   +.+....+ -.....+|+.|+ ++ ++.+|-.+..-++.+.
T Consensus       273 Vl~Aik~il~l~~~~---~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        273 VMGAIKVVANLASRC---SQELIERC-TVRVNTALLTLS-RR-DAETQYIVCKNIHALL  325 (746)
T ss_pred             HHHHHHHHHHhcCcC---CHHHHHHH-HHHHHHHHHHhh-CC-CccHHHHHHHHHHHHH
Confidence            889999999887642   12222222 122336667664 33 5678877776555544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.83  E-value=0.0036  Score=63.55  Aligned_cols=268  Identities=13%  Similarity=0.050  Sum_probs=176.4

Q ss_pred             HHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhc---ccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHH
Q 038250          146 LVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFS---KTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCM  222 (444)
Q Consensus       146 Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~---~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~L  222 (444)
                      |+.+|+.+.++ +.+...+....++..|+++-.-..   +.....+..+..+|+.+|.+.+-.++..|..+++.|..+.+
T Consensus         1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            35667777654 456666666666666665541000   00112368899999999998888999999999999999999


Q ss_pred             HHHHhcC-----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC----------------CCChHHHHHH
Q 038250          223 VWFLKSG-----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE----------------PICPTATKAS  281 (444)
Q Consensus       223 v~lL~~~-----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~----------------~~~~~~~~~a  281 (444)
                      +..|+..     +.+..--..++|+-+++...+.+..+....+++..|+..|..                ..+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     788888899999999877777777775777888888876641                0134567888


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------ccchHHHHHHHHHHhcCChhhH--------HHH-
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------QRSLCEKALSVLDGLCSSDYGR--------GDA-  343 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------~~~~~~~a~~~L~~L~~~~~~~--------~~i-  343 (444)
                      +.+++|+..+..    ....-...+.++.|+.+|..-         -.....+++.+|.++--.....        ..+ 
T Consensus       160 LKllFNit~~~~----~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~  235 (446)
T PF10165_consen  160 LKLLFNITLHYP----KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLF  235 (446)
T ss_pred             HHHHHHhhhccC----cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCccccc
Confidence            999999988764    111113455677777665421         2345778888888883211110        000 


Q ss_pred             --hcCCCChHHHHHHHhhc----C--h--hHHHHHHHHHHHHccccccchHHHHHHHH-----------------hhChH
Q 038250          344 --YNNSLIFPVIVKKILRV----S--D--LATEFAVSILWKLCKNEEREEKTAFAEAL-----------------QVGAF  396 (444)
Q Consensus       344 --~~~~g~i~~Lv~ll~~~----~--~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-----------------~~g~l  396 (444)
                        ..+...+..|+++|...    .  .  ..-..-+.+|..++...     +..+..+                 ....-
T Consensus       236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-----~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~  310 (446)
T PF10165_consen  236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-----REVRKYLRARLLPPDKDRKKPPEKGDTLR  310 (446)
T ss_pred             CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-----HHHHHHHHHHhCCChhhcccCCCCCcchH
Confidence              02223567777776541    1  1  23345666777777642     2222222                 23455


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          397 QKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       397 ~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ..|+++|.+. .+.+|..++.+|-.+++
T Consensus       311 ~rLlrLmt~~-~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  311 SRLLRLMTSP-DPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHHHHHhCCC-CchHHHHHHHHHHHHHh
Confidence            6899999888 59999999998866654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.81  E-value=7.7e-06  Score=70.04  Aligned_cols=45  Identities=18%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      |.|.||...|+.||.+.|||.||..|..+-.  +....|-+|++...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y--~kg~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKY--QKGDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHh--ccCCcceecchhhc
Confidence            8999999999999999999999999988876  45568999987654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.00049  Score=64.01  Aligned_cols=188  Identities=18%  Similarity=0.167  Sum_probs=128.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +-.++.+|.+.++.++..|+.-+..+++.  ..+.......-.++.|.+|+... .+  .+.|+.+|.|++....    .
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~----l   75 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEE----L   75 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHH----H
Confidence            45688999999999999999999999543  44444433445788889999876 34  7789999999999986    7


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc-CC----CChHHHHHHHhhc--ChhH-HHHHHH
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN-NS----LIFPVIVKKILRV--SDLA-TEFAVS  370 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~Lv~ll~~~--~~~~-~~~a~~  370 (444)
                      ++.+.+. .+..++..+.+......+..+.+|.||+..++....+.. ..    .++..++..+-..  +... -.+-+-
T Consensus        76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            8888877 888899999888778889999999999998877665521 11    3344444434322  2222 266778


Q ss_pred             HHHHHccccccchHHHHHHHHhhChHH--HHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          371 ILWKLCKNEEREEKTAFAEALQVGAFQ--KLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~--~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ++.+|+++     +..+.-......++  +|+.+-+.+ +..-|...+..++++
T Consensus       155 vf~nls~~-----~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~  202 (353)
T KOG2973|consen  155 VFANLSQF-----EAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNC  202 (353)
T ss_pred             HHHHHhhh-----hhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhh
Confidence            88999985     34444444433333  444444422 444445555566664

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=5.6e-06  Score=78.84  Aligned_cols=47  Identities=21%  Similarity=0.462  Sum_probs=38.7

Q ss_pred             cccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           37 FRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        37 ~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ++|-||++-|.+=   ..++|+|.|...||..|+ .+....||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL-~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWL-TQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhH-hhcCccCCCCCCcCCC
Confidence            5999999999853   456999999999999999 3445679999886543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.79  E-value=0.00041  Score=63.94  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcc--hhhHHHh-hcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250          227 KSGDLSRRRNAVLVLREIVSSD--HRKVNVL-LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV  303 (444)
Q Consensus       227 ~~~~~~~~~~A~~~L~~L~s~~--~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~  303 (444)
                      .+.+.+.+..|...|..+...+  ......+ ..-..++..++..+.+. ...+.+.|+.+|..|+..-.   ..-... 
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~---~~~~~~-   91 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLG---SHFEPY-   91 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHG---GGGHHH-
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHh---HhHHHH-
Confidence            4568999999999999997655  2222222 11124556777777665 56789999999999998754   122222 


Q ss_pred             hcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccch
Q 038250          304 DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREE  383 (444)
Q Consensus       304 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~  383 (444)
                      -...+|.|++.+.++...+++.|..+|..++..-.....++     ++.+...+.+.++.++..++..|..+....+. +
T Consensus        92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~-~  165 (228)
T PF12348_consen   92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGS-D  165 (228)
T ss_dssp             HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc-h
Confidence            33588999999998888899999999999987543112220     33444445556889999999888887765330 0


Q ss_pred             HHHHH-HHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          384 KTAFA-EALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       384 ~~~~~-~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ..... ...-..+++.+...+... ++.+|+.|..++..+.+++.
T Consensus       166 ~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  166 SSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             -GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-
T ss_pred             HhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence            11111 111145677777788777 99999999999888877753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR02270 conserved hypothetical protein

Probab=97.78  E-value=0.0058  Score=61.05  Aligned_cols=197  Identities=15%  Similarity=0.018  Sum_probs=129.7

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD  248 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~  248 (444)
                      +++.|+..|...  .    +.++...++.++.   ..+.        ..++..|+..|.+.+..++..++.+|..+    
T Consensus        55 a~~~L~~aL~~d--~----~~ev~~~aa~al~---~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----  113 (410)
T TIGR02270        55 ATELLVSALAEA--D----EPGRVACAALALL---AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL----  113 (410)
T ss_pred             HHHHHHHHHhhC--C----ChhHHHHHHHHHh---ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence            688888888421  1    4566655544443   1111        12489999999999998999999999865    


Q ss_pred             hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHH
Q 038250          249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALS  328 (444)
Q Consensus       249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~  328 (444)
                              ...+..+.|+.+|++. ++.++..++.++...-  .             ...+.|..+|.+.++.++..|+.
T Consensus       114 --------~~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~--~-------------~~~~~L~~~L~d~d~~Vra~A~r  169 (410)
T TIGR02270       114 --------GGRQAEPWLEPLLAAS-EPPGRAIGLAALGAHR--H-------------DPGPALEAALTHEDALVRAAALR  169 (410)
T ss_pred             --------CchHHHHHHHHHhcCC-ChHHHHHHHHHHHhhc--c-------------ChHHHHHHHhcCCCHHHHHHHHH
Confidence                    1234557788888877 7888887776665521  1             24568899999999999999999


Q ss_pred             HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc----------cchHH--HHHHHHh----
Q 038250          329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE----------REEKT--AFAEALQ----  392 (444)
Q Consensus       329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~----------~~~~~--~~~~~~~----  392 (444)
                      +|..|-.           ...++.|...+.+.++.++..|+.+|..+.....          .+...  ....+..    
T Consensus       170 aLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~  238 (410)
T TIGR02270       170 ALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG  238 (410)
T ss_pred             HHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCc
Confidence            9998743           4567778777777789999999988866643100          00000  1111111    


Q ss_pred             hChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          393 VGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       393 ~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ..+++.|..+++..   .+++.++..+-.+..
T Consensus       239 ~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~  267 (410)
T TIGR02270       239 PDAQAWLRELLQAA---ATRREALRAVGLVGD  267 (410)
T ss_pred             hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC
Confidence            24556666676654   377777776665543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=2.5e-05  Score=69.85  Aligned_cols=77  Identities=35%  Similarity=0.602  Sum_probs=69.1

Q ss_pred             CcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        28 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ..+.++|+.++|.|..++|++||+++.|-||.+.-|.++++.-|+ .-|+++.++...++.||.+++..|..|...+.
T Consensus       203 rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvgh-fdpvtr~~Lte~q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  203 RKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGH-FDPVTRWPLTEYQLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             hccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhcc-CCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence            346788999999999999999999999999999999999944444 58999999999999999999999999998773

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.75  E-value=1.4e-05  Score=78.32  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCCCC
Q 038250           10 GGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTSFE   86 (444)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~~~   86 (444)
                      ++|+...||..-+.+....-..+-.+...|.+|.+.-.||+..+|.|+||+.|+.+|+..   ..+.+||.|...++.+.
T Consensus       510 RmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  510 RMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             HHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            356666676655554434444445566899999999999999999999999999998732   23479999998887653

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.74  E-value=2.2e-05  Score=77.90  Aligned_cols=69  Identities=23%  Similarity=0.514  Sum_probs=53.8

Q ss_pred             CCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc-cHHHHHHHHHHHHh
Q 038250           33 TPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP-NHTIRRMIQDWCVE  103 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~-n~~l~~~i~~~~~~  103 (444)
                      +++++.||+|..++.+|+.+ .|||.||..|+..|. .. +..||.|+.........+ ....+..+..+...
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~-~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~   88 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESL-SN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR   88 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhh-cc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence            78889999999999999995 999999999999999 33 889999987766543333 44556666555443

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.72  E-value=3.6e-05  Score=57.64  Aligned_cols=46  Identities=20%  Similarity=0.390  Sum_probs=33.6

Q ss_pred             ccccccccCcC-ceec-CCcchhcHHHHHHHHHhc-CCCCCCCCCcccC
Q 038250           38 RCPISLDLMKD-PVTL-STGITYDRENIEKWIHED-GNITCPVTNRVLT   83 (444)
Q Consensus        38 ~Cpic~~~~~~-Pv~~-~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~   83 (444)
                      .||.|...-.+ |+.. .|+|.|...||.+|+..+ ....||.||++..
T Consensus        34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            35555544444 6555 899999999999999432 3579999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2.1e-05  Score=72.04  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      |.|-||.+.|.+||.+.|||+||..|..+.+  +....|++|.+.+.
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~--qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPY--QKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccc--ccCCcceecccccc
Confidence            7899999999999999999999999988877  45567999988664

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0073  Score=58.93  Aligned_cols=243  Identities=16%  Similarity=0.157  Sum_probs=168.9

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC-----ccc----chhHhhcCchHHHHHHHHhhcccccccchHHHHH
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKES-----DRN----KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEE  194 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~-----~~~----~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~  194 (444)
                      ++.++..|...    +.+..-..+.-|+.|...+     .+.    ...+++.++++.|++-++...++. .++..-...
T Consensus       127 V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv-keea~gv~~  201 (536)
T KOG2734|consen  127 VQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV-KEEADGVHN  201 (536)
T ss_pred             HHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc-hhhhhhhHH
Confidence            34444444443    6667777788888887543     222    346677899999999998764432 223445667


Q ss_pred             HHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc--
Q 038250          195 ILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK--  270 (444)
Q Consensus       195 a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~--  270 (444)
                      +++++-+.+...++....+++.|.+..|+.-+...  -..-+..|..+|.-+...+.+++..++. -.+|..|++-+.  
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchh
Confidence            77888766667777788888887777766654432  3566778888888886667778888854 577888887654  


Q ss_pred             ---CC---CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh---hHH
Q 038250          271 ---EP---ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY---GRG  341 (444)
Q Consensus       271 ---~~---~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---~~~  341 (444)
                         ++   ...+..++.-.+|..+.....    |+..++...++....-+++. ....+..++.+|-.+-..++   +..
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~----nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~  355 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMAPA----NRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCN  355 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcChh----hhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHH
Confidence               22   134677888888888888876    99999998888877666665 45567788999988877665   455


Q ss_pred             HHhcCCCChHHHHHHHhhc----------ChhHHHHHHHHHHHHccc
Q 038250          342 DAYNNSLIFPVIVKKILRV----------SDLATEFAVSILWKLCKN  378 (444)
Q Consensus       342 ~i~~~~g~i~~Lv~ll~~~----------~~~~~~~a~~~L~~L~~~  378 (444)
                      .+ ++.+|+..+..+++..          -....++.+.+|+.+-.+
T Consensus       356 kf-Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  356 KF-VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HH-HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            56 7888888888877631          123447777777776653

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=4.4e-05  Score=70.87  Aligned_cols=71  Identities=23%  Similarity=0.335  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCCC---CCCCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           11 GRGRRAGKKQPGVE---SGGEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        11 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ..+....+.+|+|+   ..++-+...+..-.||+|...-.+|..+. .|.+||..|+-+|+  .....||+++.+.+
T Consensus       272 ~~k~~l~~p~PpPPh~~~~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv--~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  272 KIKSTLDPPIPPPPHKQYNSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV--VNYGHCPVTGYPAS  346 (357)
T ss_pred             hhccCCCCCCCcCChhhcccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHH--HhcCCCCccCCcch
Confidence            34444455555544   12233334455679999999999998875 69999999999999  46788999988764

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=2.9e-05  Score=71.25  Aligned_cols=47  Identities=21%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             ccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        38 ~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .|+||...+.-||.+.|+|.||.-||+-.. ..+..+|++|+.++...
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy-~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSY-KNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchh-hcCCCCCceecCCCCcc
Confidence            699999999999999999999999999865 37788999999999765

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.57  E-value=0.00055  Score=63.04  Aligned_cols=185  Identities=16%  Similarity=0.090  Sum_probs=107.9

Q ss_pred             CChhHHHHHHHHHHHHhccC--cccchhHhhc--CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhc
Q 038250          138 EDQAGCRDLVAKIKKWTKES--DRNKRCIVDN--GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYL  213 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i  213 (444)
                      .|.+.+.+|+..|+.+...+  ......+.+.  ..+..++..+.+.       ...+...|+.++..+...-...-...
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~~l~~~~~~~   91 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLARQLGSHFEPY   91 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence            48899999999999999876  2233333321  4444555555322       45677788877773222111111111


Q ss_pred             ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhccccc-HHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250          214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA-IEPLFKLIKEPICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  292 (444)
                       -...+|.|+..+.+++..+++.|..+|..+.....-..       .+ ++.+...+.+. ++.++..++..|..+....
T Consensus        92 -~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-------~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~  162 (228)
T PF12348_consen   92 -ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-------KILLEILSQGLKSK-NPQVREECAEWLAIILEKW  162 (228)
T ss_dssp             -HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-
T ss_pred             -HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHc
Confidence             24568889898888889999999999999964332011       22 45566667776 8999999999888876553


Q ss_pred             CCCCchhHHHHh----cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHH
Q 038250          293 SATEKPIQKFVD----MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG  341 (444)
Q Consensus       293 ~~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  341 (444)
                      .   .....+-.    ...++.+..++.+.++++++.|-.++..+..+-..+.
T Consensus       163 ~---~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  163 G---SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             -------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             c---chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            2   01122211    3477888888899999999999999999866444443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.027  Score=53.16  Aligned_cols=226  Identities=14%  Similarity=0.069  Sum_probs=153.1

Q ss_pred             ChhHHHHHHHHHHHHhccCccc----chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRN----KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG  214 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~  214 (444)
                      |..++.-|+..+..+..+++.|    ...++.+|..+.++..+.   ..    |.++...|...+. -++..+..-..|.
T Consensus        95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg---ge----ddeVAkAAiesik-rialfpaaleaiF  166 (524)
T KOG4413|consen   95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG---GE----DDEVAKAAIESIK-RIALFPAALEAIF  166 (524)
T ss_pred             cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc---CC----cHHHHHHHHHHHH-HHHhcHHHHHHhc
Confidence            3445555566666665555533    234567899999999883   22    5778888888887 6677777777777


Q ss_pred             cCCcHHHH--HHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250          215 SASSMRCM--VWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       215 ~~g~i~~L--v~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  292 (444)
                      +......+  +.+--..+.-.+......+-.+.+.+++..... ...|.+..|..-|+...+.-+..++......|+..+
T Consensus       167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElkGteDtLVianciElvteLaete  245 (524)
T KOG4413|consen  167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE  245 (524)
T ss_pred             ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh
Confidence            66555433  333334466777888888888888888888888 667988888888876546778888999999998876


Q ss_pred             CCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCC-------CChHHHHHHHhhcChh
Q 038250          293 SATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNS-------LIFPVIVKKILRVSDL  363 (444)
Q Consensus       293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~ll~~~~~~  363 (444)
                      .    .+..+.+.|.|+.+..++...  ++--+-.++.....+-+. ++...+ .+.       -+|....+++...++.
T Consensus       246 H----greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimdv-seeaicealiiaidgsfEmiEmnDpd  319 (524)
T KOG4413|consen  246 H----GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMDV-SEEAICEALIIAIDGSFEMIEMNDPD  319 (524)
T ss_pred             h----hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhc-CHHHHHHHHHHHHHhhHHhhhcCCch
Confidence            5    788888999999999999743  444444455554444331 111111 111       1333444545556788


Q ss_pred             HHHHHHHHHHHHcccc
Q 038250          364 ATEFAVSILWKLCKNE  379 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~  379 (444)
                      .++.|+-+|..+.++.
T Consensus       320 aieaAiDalGilGSnt  335 (524)
T KOG4413|consen  320 AIEAAIDALGILGSNT  335 (524)
T ss_pred             HHHHHHHHHHhccCCc
Confidence            8999999999998853

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.56  E-value=0.014  Score=57.13  Aligned_cols=187  Identities=20%  Similarity=0.195  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .+..+++.+.+.    +...+..|...+..+...           -+++.|..+|.+   .    +..++..|+.+|.  
T Consensus        44 ~~~~~~~~l~~~----~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d---~----~~~vr~~a~~aLg--   99 (335)
T COG1413          44 AADELLKLLEDE----DLLVRLSAAVALGELGSE-----------EAVPLLRELLSD---E----DPRVRDAAADALG--   99 (335)
T ss_pred             hHHHHHHHHcCC----CHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcC---C----CHHHHHHHHHHHH--
Confidence            455566666654    566777777775555322           268899999942   2    5788888888777  


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCCh------
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP------  275 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~------  275 (444)
                               .+....+++.|+.+|. +.+..++..++.+|..+ . +..          .+.+|+.++.+....      
T Consensus       100 ---------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~-~-~~~----------a~~~l~~~l~~~~~~~a~~~~  158 (335)
T COG1413         100 ---------ELGDPEAVPPLVELLENDENEGVRAAAARALGKL-G-DER----------ALDPLLEALQDEDSGSAAAAL  158 (335)
T ss_pred             ---------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc-C-chh----------hhHHHHHHhccchhhhhhhhc
Confidence                     2334567899999998 47899999999999999 2 222          156777777765211      


Q ss_pred             -----HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCCh
Q 038250          276 -----TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF  350 (444)
Q Consensus       276 -----~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i  350 (444)
                           .++..++.+|..+              .+.-+++.+...+.+.+..++..|..+|..+....         ..+.
T Consensus       159 ~~~~~~~r~~a~~~l~~~--------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~  215 (335)
T COG1413         159 DAALLDVRAAAAEALGEL--------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA  215 (335)
T ss_pred             cchHHHHHHHHHHHHHHc--------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence                 1222222222222              23347889999999888899999999999988754         2344


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          351 PVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       351 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      +.++..+...+..++..++.+|..+-.
T Consensus       216 ~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         216 DLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            556665555566666666666555443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.55  E-value=0.00034  Score=53.80  Aligned_cols=86  Identities=24%  Similarity=0.319  Sum_probs=67.6

Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250          219 MRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       219 i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      |+.|++.| ++.++.+|..|+.+|..+ . +          ..+++.|+.+++++ ++.++..|+++|..+-.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-~-~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-G-D----------PEAIPALIELLKDE-DPMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-T-H----------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-C-C----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-------
Confidence            68899999 777999999999999855 1 1          14479999999877 89999999999987732       


Q ss_pred             hhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLD  331 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~  331 (444)
                             ..+++.|.+++.++ +..++..|+.+|+
T Consensus        61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 -------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                   23799999999876 4456888888874

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.55  E-value=0.00012  Score=47.43  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      ++++..+.+.|+++.|+.+|++++++++..|+++|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888889999999999999999999999999999994

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.53  E-value=0.00016  Score=46.87  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      +++..+++.|++++|+++|.+++..+++.++++|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            388899999999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.01  Score=60.32  Aligned_cols=228  Identities=14%  Similarity=0.142  Sum_probs=143.5

Q ss_pred             hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          166 DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       166 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      +.+.++.|-.+|.++++.    ...+++.|..+...++..-.....    .-.+|.++.-+....+..+..++..|+.++
T Consensus       211 EPyiv~~lp~il~~~~d~----~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~  282 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDK----INKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMA  282 (569)
T ss_pred             CchHHhhHHHHHHHhhcc----chhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345667777777666443    466666666655533332222111    122444444444447888999999999996


Q ss_pred             hcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250          246 SSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK  325 (444)
Q Consensus       246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~  325 (444)
                      ...+..-...  ...+||-|.+.|-+. .+++++++-.+|..+++--+    |.. |..  .+|.|++.+.++...+ ..
T Consensus       283 ~~ap~qLs~~--lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svid----N~d-I~~--~ip~Lld~l~dp~~~~-~e  351 (569)
T KOG1242|consen  283 DCAPKQLSLC--LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVID----NPD-IQK--IIPTLLDALADPSCYT-PE  351 (569)
T ss_pred             HhchHHHHHH--HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhc----cHH-HHH--HHHHHHHHhcCcccch-HH
Confidence            5555433333  368999999999888 79999999999999998765    433 222  5888888888765443 34


Q ss_pred             HHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250          326 ALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL  401 (444)
Q Consensus       326 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~  401 (444)
                      ++..|..=.-..      .+++-.+..++.+|.++    +...+..++.+.+|+|.--++  +..+     +-.++.|+.
T Consensus       352 ~~~~L~~ttFV~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~l-----apfl~~Llp  418 (569)
T KOG1242|consen  352 CLDSLGATTFVA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDL-----APFLPSLLP  418 (569)
T ss_pred             HHHhhcceeeee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHH-----hhhHHHHhh
Confidence            444444322111      15556677777777653    556678999999999985321  2222     344444444


Q ss_pred             ----HHhcCCChHHHHHHHHHH-HHHHhhc
Q 038250          402 ----LLQVGCADKTKEHVSELL-KLLNPHR  426 (444)
Q Consensus       402 ----ll~~~~~~~~k~~a~~ll-~~l~~~~  426 (444)
                          .+... .|++|.-+++.| .++.+..
T Consensus       419 ~lk~~~~d~-~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  419 GLKENLDDA-VPEVRAVAARALGALLERLG  447 (569)
T ss_pred             HHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence                44444 699999999988 4444444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.46  E-value=0.0069  Score=59.76  Aligned_cols=218  Identities=13%  Similarity=0.024  Sum_probs=139.0

Q ss_pred             ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHH
Q 038250          206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVV  284 (444)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~a  284 (444)
                      ++.-|..+.-...++.+..++-+++.+++..+.++++++. .+.+.-+.+ ...++--.++.-|..+ .+..-++.|+..
T Consensus        14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~-~~l~id~~ii~SL~~~~~~~~ER~QALkl   91 (371)
T PF14664_consen   14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQIL-LKLHIDIFIIRSLDRDNKNDVEREQALKL   91 (371)
T ss_pred             CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHH-HHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence            3333333332333444444444555999999999999995 455555555 3456556666666654 245678899999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA  364 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  364 (444)
                      ++.+.....    ... -...|.+.+++.+..+.+...+..|+.+|..|+-.+   .+++.++||+..|++.+.+++...
T Consensus        92 iR~~l~~~~----~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~  163 (371)
T PF14664_consen   92 IRAFLEIKK----GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSI  163 (371)
T ss_pred             HHHHHHhcC----Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhH
Confidence            998887753    222 246789999999999888899999999999998632   345578899999999998876668


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC------CCh--HHHHHHHHHHHHHHhhccCCCCCCccc
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG------CAD--KTKEHVSELLKLLNPHRARLECIDSMD  436 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~------~~~--~~k~~a~~ll~~l~~~~~~~~~~~~~~  436 (444)
                      .+..+.++..+-.+     +..++-+...--+..++.-+...      ...  ..-+.++.++..+=+.|.+-=.+...|
T Consensus       164 ~~~l~~~lL~lLd~-----p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  164 SESLLDTLLYLLDS-----PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             HHHHHHHHHHHhCC-----cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            88888888888875     33333332222233333322211      122  122334445555555887655444444


Q ss_pred             cc
Q 038250          437 FK  438 (444)
Q Consensus       437 ~~  438 (444)
                      ++
T Consensus       239 ~~  240 (371)
T PF14664_consen  239 FR  240 (371)
T ss_pred             ch
Confidence            43

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.017  Score=60.11  Aligned_cols=222  Identities=12%  Similarity=0.040  Sum_probs=135.2

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----hHHHh--------
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----KVNVL--------  255 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----~~~~i--------  255 (444)
                      |.+++..|+.+|..+++..-+.-...++.......+.-++++++++..++...=.+++...-+    +.+..        
T Consensus       230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~  309 (859)
T KOG1241|consen  230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS  309 (859)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence            445555555555544444333322222233344445556678888888888887777532111    11111        


Q ss_pred             -----hcccccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh----hcccc
Q 038250          256 -----LDIEGAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML----VDAQR  320 (444)
Q Consensus       256 -----~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~  320 (444)
                           +...+++|-|+++|.+.      ++-...++|..+|.-.+....           ...++.++.++    ++++-
T Consensus       310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-----------D~Iv~~Vl~Fiee~i~~pdw  378 (859)
T KOG1241|consen  310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-----------DDIVPHVLPFIEENIQNPDW  378 (859)
T ss_pred             hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-----------ccchhhhHHHHHHhcCCcch
Confidence                 01126678888888642      122345556666655544321           12344555444    45566


Q ss_pred             chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHH
Q 038250          321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL  400 (444)
Q Consensus       321 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll  400 (444)
                      .-++.|+.++..+-..++.....-...+++|.++.++...+--+++.+.++|..++.+.+   +....+....+.++.|+
T Consensus       379 r~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~---e~~~n~~~l~~~l~~l~  455 (859)
T KOG1241|consen  379 RNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP---EAIINQELLQSKLSALL  455 (859)
T ss_pred             hhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch---hhcccHhhhhHHHHHHH
Confidence            778888888888776555433322335899999999987777888999999999999765   33444455678888888


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          401 LLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       401 ~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +-|...  |++-.++.|.+-.|+++
T Consensus       456 ~gL~De--Prva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  456 EGLNDE--PRVASNVCWAFISLAEA  478 (859)
T ss_pred             HHhhhC--chHHHHHHHHHHHHHHH
Confidence            877655  77778888866666543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.41  E-value=0.00028  Score=54.26  Aligned_cols=86  Identities=21%  Similarity=0.272  Sum_probs=67.8

Q ss_pred             HHHHHHHh-hccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHH
Q 038250          308 VSLLLEML-VDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTA  386 (444)
Q Consensus       308 v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  386 (444)
                      |+.|++.| .++++.++..++.+|..+-           +..+++.|++++.+.++.++..|+.+|..+..         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence            68899999 6778999999999998442           11348899999987899999999999987632         


Q ss_pred             HHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250          387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELL  419 (444)
Q Consensus       387 ~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll  419 (444)
                            ..+++.|.+++.++.+..+|..|...|
T Consensus        61 ------~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   61 ------PEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             ------HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence                  347899999999885667788887765

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.0021  Score=64.00  Aligned_cols=187  Identities=13%  Similarity=0.037  Sum_probs=136.1

Q ss_pred             hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250          209 GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT  288 (444)
Q Consensus       209 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  288 (444)
                      -|.-+.++.+.++|+++|+..+..+.--+...++|+.-.....+..+ -..|+|..|+.++.+. +...+++..|.|+++
T Consensus       423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~f-L~~~iIdvl~~~v~sK-DdaLqans~wvlrHl  500 (743)
T COG5369         423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGF-LEKSIIDVLVNLVMSK-DDALQANSEWVLRHL  500 (743)
T ss_pred             HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHH-HHhhHHHHHHHHhhcc-hhhhhhcchhhhhhh
Confidence            36678889999999999988666666678888999865555677777 5579999999999977 678999999999999


Q ss_pred             hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhh---HHHHhcCCC----ChHHHHHHHhhcC
Q 038250          289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYG---RGDAYNNSL----IFPVIVKKILRVS  361 (444)
Q Consensus       289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~i~~~~g----~i~~Lv~ll~~~~  361 (444)
                      -.+.+  ...+-++...-++..++++..++.-.+++.++.+|.|+..+..-   -..+....-    ....|++.+...+
T Consensus       501 myncq--~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n  578 (743)
T COG5369         501 MYNCQ--KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN  578 (743)
T ss_pred             hhcCc--chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC
Confidence            98876  23455677778899999999999999999999999999873322   112211111    3345556555667


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHH
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLL  403 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll  403 (444)
                      +...+..+.+|.+++.+    ++.....+. +...+..+-+.|
T Consensus       579 p~~i~~~~yilv~~aa~----d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         579 PMEILEGCYILVRNAAC----DDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             chhhhhhHHHHHHHHhc----cchHHHHHHhHHHHHHHHHHHH
Confidence            77777788889988885    233333333 455555444444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.0012  Score=65.61  Aligned_cols=195  Identities=14%  Similarity=0.119  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250          142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC  221 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~  221 (444)
                      ....++..|..+++.-..-|.-+.+..++++|+++|+.   +    +..+.-.++..+...+-....-+..+.+.|.|..
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~---P----eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdv  477 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN---P----EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDV  477 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC---c----cceeeccchhhhhheeeeccchHHHHHHhhHHHH
Confidence            34455566666666555567778888899999999942   1    2334444555555333333445667788999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcchhh--HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250          222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRK--VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI  299 (444)
Q Consensus       222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  299 (444)
                      |+.++.+.+...|.+..|.|+++.-+++++  -+.+ . .-++..++.+..++ +..+++..+..|+|+.-+..-|++.+
T Consensus       478 l~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~L-a-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEksk  554 (743)
T COG5369         478 LVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFL-A-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSK  554 (743)
T ss_pred             HHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhH-H-hcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccc
Confidence            999999989999999999999996555433  2344 2 35688899999888 78899999999999987543111122


Q ss_pred             HHHHhcC----cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC
Q 038250          300 QKFVDMG----LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN  346 (444)
Q Consensus       300 ~~i~~~g----~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  346 (444)
                      ..+....    ....|++.+...++-..+..+-+|.+++.++++...++.+
T Consensus       555 dv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~  605 (743)
T COG5369         555 DVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS  605 (743)
T ss_pred             eeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence            2222221    3445666666667766777788888888888877776433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.32  E-value=0.012  Score=50.27  Aligned_cols=122  Identities=8%  Similarity=0.137  Sum_probs=101.3

Q ss_pred             HHhhcccccHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHH
Q 038250          253 NVLLDIEGAIEPLFKLIKEPIC-----PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEK  325 (444)
Q Consensus       253 ~~i~~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~  325 (444)
                      +.| . .||+..|+++++++..     .+....++.++..|-.++-    .-...++...|..++..+...  +..+...
T Consensus         6 EFI-~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~----vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~   79 (160)
T PF11841_consen    6 EFI-S-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI----VSWDTLSDSFIKKIASYVNSSAMDASILQR   79 (160)
T ss_pred             HHH-h-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc----CchhhccHHHHHHHHHHHccccccchHHHH
Confidence            455 3 6899999999998842     3677888999999888764    566778888999999999744  6889999


Q ss_pred             HHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250          326 ALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       326 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  380 (444)
                      |+.+|.+++..+...-..+.++--++.|+..|+..+...+.+|+..+-.|-...+
T Consensus        80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            9999999998777755555788899999999999999999999999988887654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.29  E-value=0.018  Score=56.23  Aligned_cols=183  Identities=21%  Similarity=0.175  Sum_probs=123.0

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      -.++.++.++.+.       +..++..|...+.           .+...-+++.+..+|.+.+..++..|+.+|..+  .
T Consensus        43 ~~~~~~~~~l~~~-------~~~vr~~aa~~l~-----------~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~  102 (335)
T COG1413          43 EAADELLKLLEDE-------DLLVRLSAAVALG-----------ELGSEEAVPLLRELLSDEDPRVRDAAADALGEL--G  102 (335)
T ss_pred             hhHHHHHHHHcCC-------CHHHHHHHHHHHh-----------hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--C
Confidence            3577778888532       4667777777755           233345689999999999999999999987777  2


Q ss_pred             chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-------
Q 038250          248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR-------  320 (444)
Q Consensus       248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-------  320 (444)
                      +          ...+++|+.++..+.+..++..++++|..+-...              ++.+|+..+.+...       
T Consensus       103 ~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~  158 (335)
T COG1413         103 D----------PEAVPPLVELLENDENEGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAAL  158 (335)
T ss_pred             C----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhc
Confidence            2          2345778888885337889999999988885432              37888888876542       


Q ss_pred             -----chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhCh
Q 038250          321 -----SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGA  395 (444)
Q Consensus       321 -----~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~  395 (444)
                           .++..++..|..+           .+.-.++.+...+...+..++..|+.+|..+....             ..+
T Consensus       159 ~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------------~~~  214 (335)
T COG1413         159 DAALLDVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------------VEA  214 (335)
T ss_pred             cchHHHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------hhH
Confidence                 1233333333332           55567888888888878889999999998888741             233


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHH
Q 038250          396 FQKLLLLLQVGCADKTKEHVSELL  419 (444)
Q Consensus       396 l~~Ll~ll~~~~~~~~k~~a~~ll  419 (444)
                      .+.+...+... +..++..++..|
T Consensus       215 ~~~l~~~~~~~-~~~vr~~~~~~l  237 (335)
T COG1413         215 ADLLVKALSDE-SLEVRKAALLAL  237 (335)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHh
Confidence            34444455444 555555544433

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=8.2e-05  Score=77.40  Aligned_cols=48  Identities=25%  Similarity=0.531  Sum_probs=41.2

Q ss_pred             CCccccccccccCcC-----ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           34 PNHFRCPISLDLMKD-----PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~-----Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ..+..|+||.+.|..     |..++|||.|+..|+.+|+  +...+||.|+..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~--er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWF--ERQQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHH--HHhCcCCcchhhhh
Confidence            346799999999999     7888999999999999999  34678999998443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.24  E-value=0.07  Score=54.26  Aligned_cols=236  Identities=15%  Similarity=0.125  Sum_probs=154.4

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc-cC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG-SA  216 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~  216 (444)
                      .+.....+|++.|.+..-.++..|+.+++.|+.+.+++.|+...+.  ..+.++.--..++|........+.+..++ +.
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~--~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~  121 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS--SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH  121 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc--CCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence            3678899999999999999999999999999999999999765322  12467778888888855556667776555 56


Q ss_pred             CcHHHHHHHHhcC-----------------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-------
Q 038250          217 SSMRCMVWFLKSG-----------------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-------  272 (444)
Q Consensus       217 g~i~~Lv~lL~~~-----------------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-------  272 (444)
                      +++..++..|...                 +.+....+.++++|++...+.....  ...+.++.|+.++..-       
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~--~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE--EFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch--hhhHHHHHHHHHHHHHhccCCCC
Confidence            8888888876420                 2334566888999996444433221  1245666666664411       


Q ss_pred             -CChHHHHHHHHHHHHHhcCCCC--------CCchhHHHHhcCcHHHHHHHhhcc-----c---cchHHHHHHHHHHhcC
Q 038250          273 -ICPTATKASLVVVYRTITSASA--------TEKPIQKFVDMGLVSLLLEMLVDA-----Q---RSLCEKALSVLDGLCS  335 (444)
Q Consensus       273 -~~~~~~~~a~~aL~~L~~~~~~--------~~~~~~~i~~~g~v~~Lv~lL~~~-----~---~~~~~~a~~~L~~L~~  335 (444)
                       .......++..+|.|+-.....        .+...........+..|+++|...     +   .+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence             1245677788888887321110        000011123345678888888621     1   2355667777888877


Q ss_pred             Chh-hHHHHhc---------------CCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          336 SDY-GRGDAYN---------------NSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       336 ~~~-~~~~i~~---------------~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      ... .|+.+-.               ....-..|+++|.+....++..+...|+.||.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            543 3332211               22456678888877678899999999999998

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.033  Score=56.15  Aligned_cols=280  Identities=16%  Similarity=0.134  Sum_probs=169.6

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      .+.+...+.+++..    +...++.+.+-|-.+.++-...+. .+--.+.||.|-.-+-       ..++..+.-.+..|
T Consensus       123 Fn~iFdvL~klsaD----sd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy-------~~n~~tR~flv~Wl  191 (675)
T KOG0212|consen  123 FNEIFDVLCKLSAD----SDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIY-------VINPMTRQFLVSWL  191 (675)
T ss_pred             hHHHHHHHHHHhcC----CccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHh-------cCCchHHHHHHHHH
Confidence            34566667777664    334556666666666554322222 2322344444444441       11567777777777


Q ss_pred             HhhcCCChhhhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          200 TLLFPLAGEGLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      . .+-.-++ .+.+. -...++-|..+|+.++++++..+-.+|.++...-...-..+ .....++.||.-+.++ ++..+
T Consensus       192 ~-~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss-~~~iq  267 (675)
T KOG0212|consen  192 Y-VLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSS-EPEIQ  267 (675)
T ss_pred             H-HHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCC-cHHHH
Confidence            7 3333332 23332 25667888889988999999776665555532111111122 3446788999989888 78888


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-chHHHHHHH---HHHhcCChhhHHHHhcCCCChHHHH
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR-SLCEKALSV---LDGLCSSDYGRGDAYNNSLIFPVIV  354 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~---L~~L~~~~~~~~~i~~~~g~i~~Lv  354 (444)
                      ..|+.-|.....-..    ..-...-.|++..++.++.+.++ .+++.+..+   |..+.........+ .-...+..+.
T Consensus       268 ~~al~Wi~efV~i~g----~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~  342 (675)
T KOG0212|consen  268 LKALTWIQEFVKIPG----RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLT  342 (675)
T ss_pred             HHHHHHHHHHhcCCC----cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHH
Confidence            888877887776654    33333457888999999987766 355555433   44455444444333 2234566666


Q ss_pred             HHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          355 KKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       355 ~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      +.+.......+-.++..+..|-...|+     ..-......++.|+.-|... ++.+-..+..++..++...
T Consensus       343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~-----ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~  408 (675)
T KOG0212|consen  343 KYLSDDREETRIAVLNWIILLYHKAPG-----QLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSS  408 (675)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHhhCcc-----hhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCc
Confidence            666666667777777777777665442     22233578888888888777 7888888887777776544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.036  Score=55.84  Aligned_cols=192  Identities=19%  Similarity=0.193  Sum_probs=124.2

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHHHH---HHH
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAVLV---LRE  243 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~~---L~~  243 (444)
                      ..++.++.-+.+.       ++.+|..|+..+...+......-- ..-+|++..++..+.+... .+++.|...   |..
T Consensus       250 ~~i~vlv~~l~ss-------~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  250 DMINVLVPHLQSS-------EPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             cchhhccccccCC-------cHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            4566777767432       689999999988866665443322 2236777777777765544 344444433   444


Q ss_pred             HHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchH
Q 038250          244 IVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLC  323 (444)
Q Consensus       244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~  323 (444)
                      +. ..+..++.| .-..+|..|-+.+.++ ..+.+-.++.-+..|-....    ++...-.....+.|++-|++.+..++
T Consensus       322 l~-s~~~~~~~i-d~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~tLsd~sd~vv  394 (675)
T KOG0212|consen  322 LV-SSERLKEEI-DYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKTLSDRSDEVV  394 (675)
T ss_pred             HH-hhhhhcccc-chHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHhhcCchhHHH
Confidence            42 233344335 4345777788888877 68888888888888877665    66666667899999999999999999


Q ss_pred             HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          324 EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       324 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      ..++.+|+++|.++....-.    ..+..|+++..+........+.-++..||..
T Consensus       395 l~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  395 LLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            99999999999866543111    1223344433333434445555566666653

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.0003  Score=62.63  Aligned_cols=53  Identities=25%  Similarity=0.468  Sum_probs=45.9

Q ss_pred             CccccccccccCcCce----ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           35 NHFRCPISLDLMKDPV----TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv----~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      ..|.||+|.+.+.+.+    .-+|||+||..|.++++  .+...||+|+.++..+++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkli--r~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLI--RKDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhc--cccccccCCCCcCcccceEe
Confidence            4589999999999853    33899999999999998  77789999999999887665

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.08  E-value=0.00031  Score=67.47  Aligned_cols=34  Identities=12%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHH
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWI   67 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~   67 (444)
                      +++++||||..+|++|++++|||+.|+.|-...+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            5789999999999999999999999999988766

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.06  E-value=0.048  Score=58.70  Aligned_cols=226  Identities=15%  Similarity=0.057  Sum_probs=155.7

Q ss_pred             HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250          192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE  271 (444)
Q Consensus       192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~  271 (444)
                      +..|+..|...+-..+=-...-..-|+.|.+++||++...++|..-+.+=..+.+.++....-+ ...++-.-.++.|..
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL-vKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL-VKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH-HhccCceeEEEEecC
Confidence            4566666665555544333333456999999999999999999888888788877776655555 334556666666665


Q ss_pred             -C-CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250          272 -P-ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSL  348 (444)
Q Consensus       272 -~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  348 (444)
                       . .+++.+.-|+-+|..++.+-.   ..+....+.+.+..-++.|.++ .+-++.=++-.|+.|=.+-+.-+-...+.+
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~---lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~  642 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFK---LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDN  642 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccc---hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccccc
Confidence             2 235788888999999988754   4566778889999888999875 455667777778888765555555557889


Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHH-----------HHhhChH----HHHHHHHhcCCChHHHH
Q 038250          349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAE-----------ALQVGAF----QKLLLLLQVGCADKTKE  413 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-----------~~~~g~l----~~Ll~ll~~~~~~~~k~  413 (444)
                      +.+.|+.+|....++++..|+-+|..+-....+..++....           +.-+..+    ..++.+++.+ ++-++.
T Consensus       643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~  721 (1387)
T KOG1517|consen  643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRT  721 (1387)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHH
Confidence            99999999988889999999999999877421111111111           1112223    3677788888 777666


Q ss_pred             HHHHHHHHH
Q 038250          414 HVSELLKLL  422 (444)
Q Consensus       414 ~a~~ll~~l  422 (444)
                      ..+..|..+
T Consensus       722 ev~v~ls~~  730 (1387)
T KOG1517|consen  722 EVVVALSHF  730 (1387)
T ss_pred             HHHHHHHHH
Confidence            655544443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00042  Score=65.36  Aligned_cols=49  Identities=27%  Similarity=0.561  Sum_probs=40.0

Q ss_pred             CCCccccccccccCcC-------------ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           33 TPNHFRCPISLDLMKD-------------PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~-------------Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -..+-+|-||.+-|..             |.-++|||.+..+|+..|.  +..-+||.||.++-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~--ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL--ERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH--HhccCCCcccCccc
Confidence            3556799999998543             3678999999999999999  45568999998853

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.01  E-value=0.003  Score=49.71  Aligned_cols=68  Identities=7%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250          233 RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-EPICPTATKASLVVVYRTITSASATEKPIQKFVD  304 (444)
Q Consensus       233 ~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~  304 (444)
                      .|...+.+|.||+..++.+...+ ...|+||.++.... ++.+|-.+++|.++|+||+.+++   +|+..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~v-r~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~---eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLV-RELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP---ENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH---HHHHHHHh
Confidence            45677899999999999999999 66799999998754 33479999999999999999876   67777765

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00045  Score=63.52  Aligned_cols=47  Identities=17%  Similarity=0.422  Sum_probs=37.6

Q ss_pred             cccccccccCcC--c-eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           37 FRCPISLDLMKD--P-VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        37 ~~Cpic~~~~~~--P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      --|.||+.-|..  - +.++|.|.|...|+.+|+ ......||+|+.++.+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~-~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL-LGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHH-hhhcccCCccCCCCCC
Confidence            479999988753  2 456999999999999999 3345689999987753

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.00  E-value=0.00081  Score=46.79  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHh
Q 038250          275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL  333 (444)
Q Consensus       275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L  333 (444)
                      +.++..|+++|.+++....    ....-....+++.|+.+|.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~----~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCP----ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTH----HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999887764    333345567999999999988889999999999875

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.99  E-value=0.0013  Score=45.66  Aligned_cols=55  Identities=13%  Similarity=0.120  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250          231 LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT  288 (444)
Q Consensus       231 ~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  288 (444)
                      +.+|..|+++|++++...++.....  ...+++.|+.+|+++ ++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            4689999999999865555544444  258999999999988 679999999999875

...

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0096  Score=63.74  Aligned_cols=140  Identities=19%  Similarity=0.168  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHhcchhhHHHhhccc---ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcH
Q 038250          232 SRRRNAVLVLREIVSSDHRKVNVLLDIE---GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLV  308 (444)
Q Consensus       232 ~~~~~A~~~L~~L~s~~~~~~~~i~~~~---g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v  308 (444)
                      +-.+.+..+|.|+.+.+++....+|.+.   |-++.+..+++...++.+++-|+.++.-+..+.+    ....+++.|.+
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~----Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE----CVTDLATCNVL 1815 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH----HHHHHHhhhHH
Confidence            3456789999999988897777665432   5667777778776678899999999988888876    88889999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHcc
Q 038250          309 SLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCK  377 (444)
Q Consensus       309 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~  377 (444)
                      ..|+.+|.+ -+..++.++.+|+.|++.++.-.+. ...|++..+.+++-. .++..+..|+..|..+..
T Consensus      1816 ~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA-~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1816 TTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA-LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH-HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            999999964 4667899999999999988877777 556888888887754 466777888888887764

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.93  E-value=0.045  Score=58.03  Aligned_cols=102  Identities=20%  Similarity=0.292  Sum_probs=84.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +..+..-|.+.|+.+|..|.+++..|  ..+   +.+   ..+++++.+++.++ ++.+++.|+-++..+-.-+      
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l--~~~---el~---~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld------  158 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLL--RVK---ELL---GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD------  158 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhc--ChH---HHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC------
Confidence            67777778888999999999988888  222   333   24689999999998 8999999999999997653      


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      +....+.|.+..+..++.+.++.++.+|+.+|..+..
T Consensus       159 ~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         159 KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            5677888999999999999999999999999998865

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.3  Score=51.51  Aligned_cols=203  Identities=14%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc--------ccchHHHHHHHHHHHhhcCCChh-hhhhc
Q 038250          143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL--------DENVSVLEEILSTLTLLFPLAGE-GLTYL  213 (444)
Q Consensus       143 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~--------~~~~~~~~~a~~~L~~~l~~~~~-~~~~i  213 (444)
                      ...++.-+.++|+.++++-..+.+  .++-||..|+....+..        -.||-+|..+++.|+ ++..++. ..+.+
T Consensus       196 L~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr-iLGq~d~daSd~M  272 (866)
T KOG1062|consen  196 LIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR-ILGQNDADASDLM  272 (866)
T ss_pred             eeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH-HhcCCCccHHHHH
Confidence            334444444555554444333333  55666666654311110        247889999999999 6665442 22111


Q ss_pred             -----------------ccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH-------------
Q 038250          214 -----------------GSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI-------------  262 (444)
Q Consensus       214 -----------------~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i-------------  262 (444)
                                       +.+-..+.+..++. ..+...++.|+.+|+.+....+.|-..++- .+..             
T Consensus       273 ~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL-n~L~r~V~~d~~avqrH  351 (866)
T KOG1062|consen  273 NDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL-NMLLRVVQQDPTAVQRH  351 (866)
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh-hhHHhhhcCCcHHHHHH
Confidence                             11111233333332 246788899999999987777766666632 1111             


Q ss_pred             -HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--Chhh
Q 038250          263 -EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYG  339 (444)
Q Consensus       263 -~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~  339 (444)
                       ..+++.|+++ ++..++.|+..++.|....     |...|++     .|+..|...+++.+...+.-+..++.  .++.
T Consensus       352 r~tIleCL~Dp-D~SIkrralELs~~lvn~~-----Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k  420 (866)
T KOG1062|consen  352 RSTILECLKDP-DVSIKRRALELSYALVNES-----NVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDK  420 (866)
T ss_pred             HHHHHHHhcCC-cHHHHHHHHHHHHHHhccc-----cHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc
Confidence             2455667777 8899999999888887654     6776654     58888887788899888888888875  3332


Q ss_pred             HH------HHhcC------CCChHHHHHHHhhc
Q 038250          340 RG------DAYNN------SLIFPVIVKKILRV  360 (444)
Q Consensus       340 ~~------~i~~~------~g~i~~Lv~ll~~~  360 (444)
                      +.      .++..      ..++..++.++.++
T Consensus       421 ~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  421 RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             hhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence            22      12222      33677777777665

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.033  Score=57.15  Aligned_cols=268  Identities=12%  Similarity=0.105  Sum_probs=163.5

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHh-h---cCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV-D---NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      ++++..|-..+.+.|...+.-|..+|.+++.++++--+.=+ .   .-.+|.++++.+.   .    ++.++..|+.++.
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h---~----spkiRs~A~~cvN  199 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH---P----SPKIRSHAVGCVN  199 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC---C----ChhHHHHHHhhhh
Confidence            44555554444444777888999999999977653211100 1   1256677777743   3    5889999999887


Q ss_pred             hhcCCChhhhhhccc-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          201 LLFPLAGEGLTYLGS-ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      ..+-..  +...+.. ...++.+-.+-...++++|.+.|.+|..|....++-  .+-.-.++++.+++.-++. +..+.-
T Consensus       200 q~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~-dE~VAL  274 (885)
T KOG2023|consen  200 QFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDV-DENVAL  274 (885)
T ss_pred             heeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCc-chhHHH
Confidence            322221  1122221 344555555555668999999999999996444331  2212357888888888877 677888


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHh---cCcHHHHHHHhhcccc------------------------------------
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVD---MGLVSLLLEMLVDAQR------------------------------------  320 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~---~g~v~~Lv~lL~~~~~------------------------------------  320 (444)
                      .|+.-...++....     +..++.   ...||.|++=+...+.                                    
T Consensus       275 EACEFwla~aeqpi-----~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~  349 (885)
T KOG2023|consen  275 EACEFWLALAEQPI-----CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED  349 (885)
T ss_pred             HHHHHHHHHhcCcC-----cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccc
Confidence            89988888987763     444433   3567777654431111                                    


Q ss_pred             --------------------chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh----cChhHHHHHHHHHHHHc
Q 038250          321 --------------------SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR----VSDLATEFAVSILWKLC  376 (444)
Q Consensus       321 --------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~  376 (444)
                                          .+++-.+++|..|+.       + .....++.+.-+|+.    ..=.++|.++-+|+.++
T Consensus       350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------v-f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIA  421 (885)
T KOG2023|consen  350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------V-FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIA  421 (885)
T ss_pred             cccccccccccccccccccccHhhccHHHHHHHHH-------h-hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence                                123333444444432       1 112234444444443    34467899999999988


Q ss_pred             cccccchHHHHHHHHh--hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          377 KNEEREEKTAFAEALQ--VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       377 ~~~~~~~~~~~~~~~~--~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .    |   ...-++.  ...+|.|+.+|... .+-+|..+-|.|.-++.+
T Consensus       422 E----G---cM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  422 E----G---CMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             H----H---HhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence            7    2   3443432  34678888899887 888888888888777754

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.092  Score=53.65  Aligned_cols=198  Identities=13%  Similarity=0.088  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250          192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE  271 (444)
Q Consensus       192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~  271 (444)
                      ...++..|. .+...........-...||.|.+.|....+++|+.+-.+|..+. ...+|.+..    -.+|.|++.+.+
T Consensus       271 K~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~-svidN~dI~----~~ip~Lld~l~d  344 (569)
T KOG1242|consen  271 KMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG-SVIDNPDIQ----KIIPTLLDALAD  344 (569)
T ss_pred             HHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH-HhhccHHHH----HHHHHHHHHhcC
Confidence            445556666 33333333334445789999999999999999999999999995 445566633    468999999987


Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh----ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250          272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV----DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS  347 (444)
Q Consensus       272 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  347 (444)
                      +. -.+ ..+   +..|....     ... .|++-.+..++.+|.    ..+..++..++.+..|++.--++...+   +
T Consensus       345 p~-~~~-~e~---~~~L~~tt-----FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l---a  410 (569)
T KOG1242|consen  345 PS-CYT-PEC---LDSLGATT-----FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL---A  410 (569)
T ss_pred             cc-cch-HHH---HHhhccee-----eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH---h
Confidence            72 122 222   33333322     122 234445666666665    447788899999999999866555555   1


Q ss_pred             CChHHHHHHHhh----cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          348 LIFPVIVKKILR----VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       348 g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      -.++.|+.-+..    ..+.+++.+.++|..+-..        ..+....+.+|-|.+.++......-+..++.
T Consensus       411 pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~--------~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq  476 (569)
T KOG1242|consen  411 PFLPSLLPGLKENLDDAVPEVRAVAARALGALLER--------LGEVSFDDLIPELSETLTSEKSLVDRSGAAQ  476 (569)
T ss_pred             hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH--------HHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence            334444444433    3578889999998766552        1111114555555555555434444444333

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.80  E-value=0.12  Score=47.61  Aligned_cols=197  Identities=16%  Similarity=0.173  Sum_probs=124.0

Q ss_pred             hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250          165 VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI  244 (444)
Q Consensus       165 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L  244 (444)
                      ....+++.|+..|...     +..+-++..|..+|.. .          ...+..+.+-++.+....++++....+|..+
T Consensus        64 ~~~~Av~~l~~vl~de-----sq~pmvRhEAaealga-~----------~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rl  127 (289)
T KOG0567|consen   64 QDEDAVPVLVEVLLDE-----SQEPMVRHEAAEALGA-I----------GDPESLEILTKYIKDPCKEVRETCELAIKRL  127 (289)
T ss_pred             ccchhhHHHHHHhccc-----ccchHHHHHHHHHHHh-h----------cchhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence            3456889999988432     2257788888888883 1          2234455555655555677777777777776


Q ss_pred             HhcchhhHHHhhc----------------ccccHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250          245 VSSDHRKVNVLLD----------------IEGAIEPLFKLIKEPICP-TATKASLVVVYRTITSASATEKPIQKFVDMGL  307 (444)
Q Consensus       245 ~s~~~~~~~~i~~----------------~~g~i~~Lv~ll~~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~  307 (444)
                      -     .+..++.                ..+-+.-|-..|.+...+ --+..|.-.|+|+-..              .+
T Consensus       128 e-----~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--------------ea  188 (289)
T KOG0567|consen  128 E-----WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE--------------EA  188 (289)
T ss_pred             H-----HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH--------------HH
Confidence            2     1111210                011122333223222111 1233333344443222              14


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHH
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKT  385 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~  385 (444)
                      |.+|++=+..++.-.+..++-++++|-           ..-.||.|.+.|...  .+.++-.|+.+|+.++.        
T Consensus       189 I~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------  249 (289)
T KOG0567|consen  189 INALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------  249 (289)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence            666667777677778888888888773           345688899988764  67889999999999998        


Q ss_pred             HHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          386 AFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       386 ~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                             ...++.|.+.+... .+.+++.|...|.++-
T Consensus       250 -------e~~~~vL~e~~~D~-~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  250 -------EDCVEVLKEYLGDE-ERVVRESCEVALDMLE  279 (289)
T ss_pred             -------HHHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence                   35667788888777 8899999998888875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.80  E-value=0.00064  Score=65.92  Aligned_cols=44  Identities=23%  Similarity=0.527  Sum_probs=36.7

Q ss_pred             ccccccccccCcCce----ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMKDPV----TLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv----~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .-+||+|++-|.+-+    ++-|.|+|.-.|+.+|+    ..+||+||.-.+
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~----~~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW----DSSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhcc----cCcChhhhhhcC
Confidence            349999999999876    45899999999999998    347999986554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.037  Score=57.77  Aligned_cols=267  Identities=13%  Similarity=0.110  Sum_probs=137.2

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA  206 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~  206 (444)
                      +..-|....+.+++.++..|+-....+-..   +.+...+.|.++.|-+++.   ++    ++.|...|+++|..+...+
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~---D~----~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLS---DS----NPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhc---CC----CchHHHHHHHHHHHHHHhC
Confidence            333344444445777888887777777543   5677888999999999994   33    6899999999999555544


Q ss_pred             hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250          207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV  285 (444)
Q Consensus       207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL  285 (444)
                      .+........-.+..++..|..-+.   ..-+.+|-.++...+ +.++.    ..++..+...|++. +..++-.+..++
T Consensus       192 ~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~-n~avvlsavKv~  263 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA----EDICERLTPRLQHA-NSAVVLSAVKVI  263 (734)
T ss_pred             CCCCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccC-CcceEeehHHHH
Confidence            4311111112223333333322222   222333333321111 11111    12334444444444 444555555555


Q ss_pred             HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-----------------------------------cchHHHHHHHH
Q 038250          286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-----------------------------------RSLCEKALSVL  330 (444)
Q Consensus       286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----------------------------------~~~~~~a~~~L  330 (444)
                      .++.....    .....+-...-++|+.++...+                                   -.++..=+.++
T Consensus       264 l~~~~~~~----~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil  339 (734)
T KOG1061|consen  264 LQLVKYLK----QVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEIL  339 (734)
T ss_pred             HHHHHHHH----HHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHH
Confidence            55554432    2222222234444444444332                                   12233333333


Q ss_pred             HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250          331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK  410 (444)
Q Consensus       331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~  410 (444)
                      ..|+. +++-.++      +..+...-...+......+++++..++...        .+.  .+.|..|+++++.+-+-.
T Consensus       340 ~~la~-~~nl~qv------l~El~eYatevD~~fvrkaIraig~~aik~--------e~~--~~cv~~lLell~~~~~yv  402 (734)
T KOG1061|consen  340 IELAN-DANLAQV------LAELKEYATEVDVDFVRKAVRAIGRLAIKA--------EQS--NDCVSILLELLETKVDYV  402 (734)
T ss_pred             HHHhh-HhHHHHH------HHHHHHhhhhhCHHHHHHHHHHhhhhhhhh--------hhh--hhhHHHHHHHHhhcccce
Confidence            33332 1111111      112222222235556678889998888731        111  789999999999884445


Q ss_pred             HHHHHHHHHHHHHhhccCCCCC
Q 038250          411 TKEHVSELLKLLNPHRARLECI  432 (444)
Q Consensus       411 ~k~~a~~ll~~l~~~~~~~~~~  432 (444)
                      +++...-+-.+++++.+..+++
T Consensus       403 vqE~~vvi~dilRkyP~~~~~v  424 (734)
T KOG1061|consen  403 VQEAIVVIRDILRKYPNKYESV  424 (734)
T ss_pred             eeehhHHHHhhhhcCCCchhhh
Confidence            5555555666667777665555

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.15  Score=53.26  Aligned_cols=200  Identities=18%  Similarity=0.188  Sum_probs=117.0

Q ss_pred             CchHHHHHHHHhhcccccccch-HHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250          168 GAVSVLAEAFETFSKTCLDENV-SVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS  246 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~-~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s  246 (444)
                      +++|.|+++|....++. +.|. .....|-.+|. +.+.  -.+..|+. -++|.+-.-+++++..-++.|+.+++.+..
T Consensus       319 ~v~P~Ll~~L~kqde~~-d~DdWnp~kAAg~CL~-l~A~--~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDD-DDDDWNPAKAAGVCLM-LFAQ--CVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE  393 (859)
T ss_pred             HhhHHHHHHHHhCCCCc-ccccCcHHHHHHHHHH-HHHH--Hhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence            78899999996532221 1121 22233333333 1110  11112221 334444445567789999999999999964


Q ss_pred             cchhhH-HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250          247 SDHRKV-NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK  325 (444)
Q Consensus       247 ~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~  325 (444)
                      +.+..+ ..+  ..+++|.++.++.++ +.-++..++|+|..++.+-.  ...-....-.+.++.++.=|. +.+.+..+
T Consensus       394 gp~~~~Lt~i--V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~N  467 (859)
T KOG1241|consen  394 GPEPDKLTPI--VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVASN  467 (859)
T ss_pred             CCchhhhhHH--HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence            443333 333  369999999999977 77888999999999998753  111222222344445544443 36788999


Q ss_pred             HHHHHHHhcCChh------hHHHHhcCCCChHHHHHHHhhc-------ChhHHHHHHHHHHHHccccc
Q 038250          326 ALSVLDGLCSSDY------GRGDAYNNSLIFPVIVKKILRV-------SDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       326 a~~~L~~L~~~~~------~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~~~L~~L~~~~~  380 (444)
                      ++|++.+|+..-.      ++... .+ -..+.+++-|...       ....+-.|..+|..+..+++
T Consensus       468 ~CWAf~~Laea~~eA~~s~~qt~~-~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st  533 (859)
T KOG1241|consen  468 VCWAFISLAEAAYEAAVSNGQTDP-AT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST  533 (859)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCc-cc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence            9999999984211      01111 11 2334444444332       22456778888888887754

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.76  E-value=0.19  Score=54.24  Aligned_cols=249  Identities=12%  Similarity=0.143  Sum_probs=154.2

Q ss_pred             hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh----cCC----HHHH
Q 038250          163 CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK----SGD----LSRR  234 (444)
Q Consensus       163 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~  234 (444)
                      .+.+.||+..|+.+|.+..+.  ..+.+.....+.+|. .+..-..||+.+.+.|+++.|++.|.    .+.    .++-
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~--~~~~~ll~~llkLL~-~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDF--SRGRELLQVLLKLLR-YCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccc--cCcHHHHHHHHHHHH-HHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            466789999999999765331  124667777888888 67777899999999999999999885    233    6777


Q ss_pred             HHHHHHHHHHHhcchhhHHHhh------cc-------cccHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          235 RNAVLVLREIVSSDHRKVNVLL------DI-------EGAIEPLFKLIKEP---ICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       235 ~~A~~~L~~L~s~~~~~~~~i~------~~-------~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +....++..|.+...  ...+.      ..       ..-+..|++.+.+.   .++.+....++.|-+|+.++.   +.
T Consensus       189 E~LL~IiE~ll~ea~--~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~---e~  263 (802)
T PF13764_consen  189 EQLLEIIESLLSEAN--SSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE---EK  263 (802)
T ss_pred             HHHHHHHHHHHHHHh--hhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH---HH
Confidence            888888877743222  21111      11       11266666666654   258889999999999999876   23


Q ss_pred             hHHHHhcCcHHHHHHHhhcc-----ccch-HHHHHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcCh--------
Q 038250          299 IQKFVDMGLVSLLLEMLVDA-----QRSL-CEKALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSD--------  362 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~-----~~~~-~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~--------  362 (444)
                      ...+++.  +.+.+++=.-+     +..+ .+..+.+...|-.+.  ..-+..+.+.|++...++.|...-+        
T Consensus       264 m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~  341 (802)
T PF13764_consen  264 MDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSP  341 (802)
T ss_pred             HHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCH
Confidence            3333332  33333322111     1112 233333333343322  2333444889999999998876322        


Q ss_pred             h--------HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          363 L--------ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       363 ~--------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      .        .-..++..|.-||..     ....+.++..++++.+-.|=+..++..+-..|-.+|..++...
T Consensus       342 eWk~~l~~psLp~iL~lL~GLa~g-----h~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  342 EWKEFLSRPSLPYILRLLRGLARG-----HEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHhc-----CHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            1        225678888888884     2233444667777555555554434566667777777777643

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.26  Score=46.70  Aligned_cols=272  Identities=15%  Similarity=0.105  Sum_probs=171.4

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHH--HHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVL--AEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS  215 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~L--v~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~  215 (444)
                      +|.++...|.+.|..++.. +..-..+.+......+  +++-..       .+.-++...+..+..+.+.+++.-.....
T Consensus       140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaak-------cndiaRvRVleLIieifSiSpesaneckk  211 (524)
T KOG4413|consen  140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAK-------CNDIARVRVLELIIEIFSISPESANECKK  211 (524)
T ss_pred             CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhh-------hhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence            3777888889999999865 5556666666544433  222211       13456777777777777888888888888


Q ss_pred             CCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCCC
Q 038250          216 ASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       216 ~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~  293 (444)
                      .|.+..|..=|+. .+.-++.+.......| ...+..++.+ .+.|.|..+..++.... +|-.+-.++.....+-.. .
T Consensus       212 SGLldlLeaElkGteDtLVianciElvteL-aeteHgrefl-aQeglIdlicnIIsGadsdPfekfralmgfgkffgk-e  288 (524)
T KOG4413|consen  212 SGLLDLLEAELKGTEDTLVIANCIELVTEL-AETEHGREFL-AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-E  288 (524)
T ss_pred             hhHHHHHHHHhcCCcceeehhhHHHHHHHH-HHHhhhhhhc-chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-h
Confidence            9999999888876 4666777888888888 4566788888 55799999988887542 343333233322222222 1


Q ss_pred             CCCchhHHHHhcC-------cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh---cC-h
Q 038250          294 ATEKPIQKFVDMG-------LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR---VS-D  362 (444)
Q Consensus       294 ~~~~~~~~i~~~g-------~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~---~~-~  362 (444)
                          +...+++..       +|+..++++...|+..++.|+.+|..|-+..++...+ ...| -|..-.++.+   .+ .
T Consensus       289 ----aimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll-lkTg-ppaaehllarafdqnah  362 (524)
T KOG4413|consen  289 ----AIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL-LKTG-PPAAEHLLARAFDQNAH  362 (524)
T ss_pred             ----HHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH-hccC-ChHHHHHHHHHhccccc
Confidence                333333332       4455556666779999999999999999988888777 4444 3344344433   22 2


Q ss_pred             hHHHHHHHHHHHHccccccc--------hHHHHHHHH-h----h---ChHHHHHHHHhcCCChHHHHHHHHHHHHH-Hhh
Q 038250          363 LATEFAVSILWKLCKNEERE--------EKTAFAEAL-Q----V---GAFQKLLLLLQVGCADKTKEHVSELLKLL-NPH  425 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~--------~~~~~~~~~-~----~---g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l-~~~  425 (444)
                      --++.++.+|.+++....-.        .++..+..+ .    .   .-+..++.+++.. .++++-.+-+.+..+ .+-
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            34678888888887643211        011111111 1    1   2233455667666 888888888755544 444


Q ss_pred             cc
Q 038250          426 RA  427 (444)
Q Consensus       426 ~~  427 (444)
                      |.
T Consensus       442 Wa  443 (524)
T KOG4413|consen  442 WA  443 (524)
T ss_pred             HH
Confidence            53

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.026  Score=57.85  Aligned_cols=207  Identities=14%  Similarity=0.080  Sum_probs=133.0

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC------Chhhhh
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL------AGEGLT  211 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~------~~~~~~  211 (444)
                      +|..++..|++.|-.|... -.--+.     .....++++   +|+    +.+|+..|+.++. ...+      ..++-.
T Consensus       210 ~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l---sD~----~e~VR~aAvqlv~-v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  210 QDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL---SDD----YEDVRKAAVQLVS-VWGNRCPAPLERESEE  275 (823)
T ss_pred             CCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh---cch----HHHHHHHHHHHHH-HHHhcCCCcccchhhh
Confidence            4777888888888777642 211111     234456666   333    5778888877665 2221      111111


Q ss_pred             hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh------H---------------------------------
Q 038250          212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK------V---------------------------------  252 (444)
Q Consensus       212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~------~---------------------------------  252 (444)
                      .=....+...+...++..+..++-.|+.+|+.+-..+++.      |                                 
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a  355 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA  355 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence            1112456777778888888888888888887763222211      1                                 


Q ss_pred             -----------HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccc
Q 038250          253 -----------NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS  321 (444)
Q Consensus       253 -----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~  321 (444)
                                 ..| ...|+-.++|+-|++. -.+++++|...+..|+.+..       .+.. .++..|++++.+....
T Consensus       356 dvpsee~d~~~~si-I~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP-------~FA~-~aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  356 DVPSEEDDEEEESI-IPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSP-------GFAV-RALDFLVDMFNDEIEV  425 (823)
T ss_pred             cCchhhcccccccc-ccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCC-------CcHH-HHHHHHHHHhccHHHH
Confidence                       111 1234556677767665 57899999999999998754       1211 2689999999999999


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250          322 LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK  374 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  374 (444)
                      ++..|+.+|..++.+-..+      ..-++.+.+.|...+..+++..-..|.+
T Consensus       426 VRL~ai~aL~~Is~~l~i~------eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLAIR------EEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHheec------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            9999999999998864333      3446677787877788887766655544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.69  E-value=0.34  Score=49.22  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      .+..++..|+.+|...+.+..   +....    .-+...|-+.+... ++.+|+.|+.+|+.+.-..+
T Consensus       499 EN~ivRsaAv~aLskf~ln~~---d~~~~----~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~da  558 (898)
T COG5240         499 ENNIVRSAAVQALSKFALNIS---DVVSP----QSVENALKRCLNDQ-DDEVRDRASFLLRNMRLSDA  558 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCcc---ccccH----HHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhhhh
Confidence            355677888888876665421   11222    23444555677666 89999999999999985444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.68  E-value=0.072  Score=54.32  Aligned_cols=257  Identities=10%  Similarity=0.032  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +..++..|.+    ..+.++.+|+.....+++--..  --+.+.+.|.|  |.+-|   .+.    ++++.-..+.++..
T Consensus       606 vStiL~~L~~----k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l---ge~----ypEvLgsil~Ai~~  672 (975)
T COG5181         606 VSTILKLLRS----KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL---GED----YPEVLGSILKAICS  672 (975)
T ss_pred             HHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc---Ccc----cHHHHHHHHHHHHH
Confidence            3344444444    4788888898887777653221  12345566644  44444   222    68888888887775


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      +.+...-.+-+=--.|.+|.|..+|++.+..++.+....++.++...++   .|+-+    -+--.|+++|++- +.+.+
T Consensus       673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM----RIcfeLvd~Lks~-nKeiR  747 (975)
T COG5181         673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM----RICFELVDSLKSW-NKEIR  747 (975)
T ss_pred             HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHh-hHHHH
Confidence            5554432222212368999999999999999999999999999766654   23333    1234578888877 78999


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      ++|..++..++..-          .-..++..|+.-|...+...+....-+++..+.       .+.--.++|.|+.--.
T Consensus       748 R~A~~tfG~Is~ai----------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae-------~cgpfsVlP~lm~dY~  810 (975)
T COG5181         748 RNATETFGCISRAI----------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAE-------YCGPFSVLPTLMSDYE  810 (975)
T ss_pred             HhhhhhhhhHHhhc----------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh-------hcCchhhHHHHHhccc
Confidence            99999888876542          122345556655554333332222222222211       1111123444433222


Q ss_pred             hcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHH-HHhcCCChHHHHHHHHHHHHHH
Q 038250          359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLL-LLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      .....+|.-.+++++-+-..       .-++.. ---.+.+|++ .|... ++.-|+-|+.+++.++
T Consensus       811 TPe~nVQnGvLkam~fmFey-------ig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~  869 (975)
T COG5181         811 TPEANVQNGVLKAMCFMFEY-------IGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLV  869 (975)
T ss_pred             CchhHHHHhHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHh
Confidence            33555666555555444332       111111 1233445555 55555 7888888888888776

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.66  E-value=0.0062  Score=47.95  Aligned_cols=65  Identities=8%  Similarity=0.095  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250          192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK--SGDLSRRRNAVLVLREIVSSDHRKVNVLL  256 (444)
Q Consensus       192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~L~s~~~~~~~~i~  256 (444)
                      +...+++|..++..+..++..+.+.|+||.+++.-.  ..+|-+++.|.++|++|+..+++|++.|+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            344567777666778899999999999999999754  34899999999999999999999999883

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00099  Score=63.83  Aligned_cols=60  Identities=28%  Similarity=0.553  Sum_probs=46.6

Q ss_pred             cccccccccCcCc-----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHH
Q 038250           37 FRCPISLDLMKDP-----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRM   96 (444)
Q Consensus        37 ~~Cpic~~~~~~P-----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~   96 (444)
                      -+||||++-+..|     |++.|||-|-..||++|+.......||.|.-.-..+++.+-++++..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            5899999999887     45689999999999999953445789999766556666665555443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.61  E-value=0.18  Score=47.66  Aligned_cols=226  Identities=15%  Similarity=0.105  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhc-ccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYL-GSASSMRCMVWFLKS--GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i-~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      +-.+.-|+++|. ++....+.|..+ ++...-..++.+++.  |..++|-+..-.++-| +.++...+-|-.....|.-|
T Consensus       163 ~lTrlfav~cl~-~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l-Tf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLS-NLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL-TFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHh-hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Confidence            445566778887 777777777654 456667788888876  4688999999999999 66777666664445678889


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---ccchHHHHH---HHHHH----hcC
Q 038250          266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---QRSLCEKAL---SVLDG----LCS  335 (444)
Q Consensus       266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~---~~L~~----L~~  335 (444)
                      +++++......+.+-+++.+.|++.-..  ......+.-.|-+.+-+++|...   +++++...-   ..|.+    |+.
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~p--K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~  318 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSP--KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9999877557888999999999987332  12455555566666667777643   444442222   22211    121


Q ss_pred             Chh------------------------hHHHHh-cCCCChHHHHHHHhhcChh-HHHHHHHHHHHHccccccchHHHHHH
Q 038250          336 SDY------------------------GRGDAY-NNSLIFPVIVKKILRVSDL-ATEFAVSILWKLCKNEEREEKTAFAE  389 (444)
Q Consensus       336 ~~~------------------------~~~~i~-~~~g~i~~Lv~ll~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~  389 (444)
                      .++                        +-..+. -+...+..|.++++...+. .-..|+.=+..+....    ++...-
T Consensus       319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~----PE~~~v  394 (432)
T COG5231         319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS----PEINAV  394 (432)
T ss_pred             HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC----chHHHH
Confidence            111                        111111 1123677888888776544 3467777788888754    445655


Q ss_pred             HHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          390 ALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       390 ~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      ..+-|+=..+++++..+ ++++|-.|...++.+-
T Consensus       395 l~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         395 LSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            66899999999999998 9999999999887764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.60  E-value=0.12  Score=53.99  Aligned_cols=251  Identities=14%  Similarity=0.071  Sum_probs=144.7

Q ss_pred             hcccCChhHHHHHHHHHHHHhccCccc--chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh
Q 038250          134 ACKSEDQAGCRDLVAKIKKWTKESDRN--KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT  211 (444)
Q Consensus       134 ~~~~~~~~~~~~Al~~L~~l~~~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~  211 (444)
                      .+++.++.++.+|+..+..++.--...  -+.+...|.|  |...|.   +    +.+++.-..+.+|..++....-.+.
T Consensus       807 rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylg---e----eypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  807 RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLG---E----EYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcC---c----ccHHHHHHHHHHHHHHHHhcccccc
Confidence            334457788888888888877532211  2356666754  555552   2    2688888777777754443322222


Q ss_pred             hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250          212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT  288 (444)
Q Consensus       212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  288 (444)
                      .==-.|.+|.|..+|++.+..++++....++.++...++   .|+-+ .   +--.|+.+|+.. +.+.+++|..++..+
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-R---IcfeLlelLkah-kK~iRRaa~nTfG~I  952 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-R---ICFELLELLKAH-KKEIRRAAVNTFGYI  952 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-H---HHHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence            111258899999999999999999999999999755553   33333 1   234577888877 688999999988887


Q ss_pred             hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHH
Q 038250          289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFA  368 (444)
Q Consensus       289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a  368 (444)
                      +..-          .-..++..|+.-|...+...+....-+++..+   +...-+    .++|.|+.--......+|.-.
T Consensus       953 akaI----------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa---E~c~pF----tVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen  953 AKAI----------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVA---ETCGPF----TVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred             HHhc----------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhh---hhcCch----hhhHHHHhhccCchhHHHHhH
Confidence            6542          12334555655554333322221222222111   111111    244554443333455667655


Q ss_pred             HHHHHHHccccccchHHHHHHHH--hhChHHHHHH-HHhcCCChHHHHHHHHHHHHHHh
Q 038250          369 VSILWKLCKNEEREEKTAFAEAL--QVGAFQKLLL-LLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       369 ~~~L~~L~~~~~~~~~~~~~~~~--~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +++|.-+-..        +-++.  ---++.+|++ .|-.. +..-|+.|+.+++.++=
T Consensus      1016 Lkalsf~Fey--------igemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1016 LKALSFMFEY--------IGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             HHHHHHHHHH--------HHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhc
Confidence            5555544432        22221  1223344444 55555 77888888888887763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.82  Score=47.82  Aligned_cols=186  Identities=16%  Similarity=0.123  Sum_probs=111.6

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      +.|+++|..+    |+.++..|+.-+.+|++.+|.|--.     .-|.+-.+|.+.+      +--+.-+.+.....+..
T Consensus       184 prL~EkLeDp----Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSs------NNWmLIKiiKLF~aLtp  248 (877)
T KOG1059|consen  184 PRLVEKLEDP----DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSS------NNWVLIKLLKLFAALTP  248 (877)
T ss_pred             HHHHHhccCC----CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccC------CCeehHHHHHHHhhccc
Confidence            4455555554    7888888888888888888876422     2366777774322      34455556665553333


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHH-HHHHHHHHHH--HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLS-RRRNAVLVLR--EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~A~~~L~--~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      ..+.-..     -.+++|..++.+.... +.-.++.++-  +++++.++.-..+   .-.+..|-.++.+. ++-.+--+
T Consensus       249 lEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fieds-DqNLKYlg  319 (877)
T KOG1059|consen  249 LEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDS-DQNLKYLG  319 (877)
T ss_pred             cCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcC-CccHHHHH
Confidence            3333222     3478888888765421 1111111111  3333332333333   12355555666666 78888888


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA  343 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  343 (444)
                      +-+++-+...+.      ..+..  --+.++++|.+.|+.++-.|+.+|..++. .++-.+|
T Consensus       320 Llam~KI~ktHp------~~Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eI  372 (877)
T KOG1059|consen  320 LLAMSKILKTHP------KAVQA--HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEI  372 (877)
T ss_pred             HHHHHHHhhhCH------HHHHH--hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHH
Confidence            888888876643      22222  25678899999999999999999999986 3344444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.63  Score=48.63  Aligned_cols=251  Identities=12%  Similarity=0.102  Sum_probs=155.9

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..|+++    -+-.+.+|+..|..+.-.-|+.   +.  -.+|.|+.-|+.   +    |+.|+..|+.+++.+..
T Consensus       147 ~Dv~tLL~ss----kpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD---p----Dp~V~SAAV~VICELAr  210 (877)
T KOG1059|consen  147 DDVFTLLNSS----KPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED---P----DPSVVSAAVSVICELAR  210 (877)
T ss_pred             HHHHHHHhcC----chHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC---C----CchHHHHHHHHHHHHHh
Confidence            3455555554    5678888998888877554432   11  246888888842   2    79999999999996666


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLV  283 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  283 (444)
                      .++.|--.+     -|.+-.+|... |.=+-.......++|+-..|....      ..|++|..++.+..-....-.+..
T Consensus       211 KnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~AmSLlYECvN  279 (877)
T KOG1059|consen  211 KNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVAMSLLYECVN  279 (877)
T ss_pred             hCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHHHHHHHHHHH
Confidence            677665443     36777777543 333334556777777434444333      458999999986622233333333


Q ss_pred             HHH--HHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhc
Q 038250          284 VVY--RTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       284 aL~--~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      ++.  +++.+..    +....+.. ++..|-.++.+.|+.++--++-+++.+.. |+..-.+.      -..+++.|...
T Consensus       280 TVVa~s~s~g~~----d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~Dk  348 (877)
T KOG1059|consen  280 TVVAVSMSSGMS----DHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDK  348 (877)
T ss_pred             HheeehhccCCC----CcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccC
Confidence            333  4444433    33333333 67778888888899999999999998875 33322222      23556777777


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH-HHhcCCChHHHHHHHHHHHHHHh
Q 038250          361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL-LLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ++.++-.|+..|..+..      .+++.++     +..|+. +...+++.---+....++.+++.
T Consensus       349 D~SIRlrALdLl~gmVs------kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  349 DESIRLRALDLLYGMVS------KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             CchhHHHHHHHHHHHhh------hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            88899999999988887      5666654     445555 44444233333444446666653

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0042  Score=66.64  Aligned_cols=75  Identities=32%  Similarity=0.463  Sum_probs=68.4

Q ss_pred             cCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      +..++|++|.-|+...+|.|||.++ .|++.||.-|.+++  ....+-|.||.++..+++.||..++..|+.|..+..
T Consensus       863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhl--Ls~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHL--LSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHH--hcCCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            4556899999999999999999997 89999999999998  566788999999999999999999999999988764

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0012  Score=44.30  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=38.3

Q ss_pred             cccccccccCcCceecCCcc-hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMKDPVTLSTGI-TYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~~cg~-~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -.|.||-+--.|-|...||| -.|..|-.+.+ ...+..||.||.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~-~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLK-KALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHH-HccCCcCcchhhHHH
Confidence            46999998888888889999 48999998877 347789999998763

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.38  E-value=0.063  Score=45.84  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=91.8

Q ss_pred             hhHHHHhcCcHHHHHHHhhcccc------chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDAQR------SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAV  369 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~  369 (444)
                      ....+++.||+..|++++.++..      .+...++.++..|-.++-.--.. .+...|..++..+...  +..+.+.|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~-l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDT-LSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhh-ccHHHHHHHHHHHccccccchHHHHHH
Confidence            35678999999999999987753      56677888888887776545555 5666778888877653  567889999


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      .+|-++..+++    ..-..+-++=-++.|+..|+.. +..++.+|.++++.+
T Consensus        82 aILEs~Vl~S~----~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL  129 (160)
T PF11841_consen   82 AILESIVLNSP----KLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINAL  129 (160)
T ss_pred             HHHHHHHhCCH----HHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            99999999643    3344444667788999999997 999999999977765

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.37  E-value=0.22  Score=45.25  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhh-hhhcccCCcHH
Q 038250          142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEG-LTYLGSASSMR  220 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~-~~~i~~~g~i~  220 (444)
                      .+-.|+..|+-++.+ ++.|..+.++-.---|-.+|...+.+  ....-++-.+++++..++..++.. -..+...++||
T Consensus        95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            456677777778776 67899999988655566677432111  234667888999998777766643 44566899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcchh------hHHHhhcccccHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHR------KVNVLLDIEGAIEPLFK-LIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~------~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ..++.+..|+...|.-|..++..+...+..      ..+.+....-.+..+|. +.+.+ ++...+++.++..+|+.+..
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999544431      11222111233444443 33444 78999999999999987653

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0012  Score=59.74  Aligned_cols=51  Identities=20%  Similarity=0.292  Sum_probs=40.0

Q ss_pred             CCccccccccccCcCce----------ecCCcchhcHHHHHHHHHhcCC-CCCCCCCcccCCC
Q 038250           34 PNHFRCPISLDLMKDPV----------TLSTGITYDRENIEKWIHEDGN-ITCPVTNRVLTSF   85 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv----------~~~cg~~~c~~ci~~~~~~~~~-~~CP~c~~~~~~~   85 (444)
                      -++-.|-+|.+-+..-+          .++|+|+|.-.||.-|. --|+ .+||-|++.+...
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc-ivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC-IVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe-eecCCCCCchHHHHhhHh
Confidence            34568999998776554          67999999999999998 4454 6899998766533

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.045  Score=56.20  Aligned_cols=185  Identities=14%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-------hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-------RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT  290 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  290 (444)
                      .....+.+|+.+...++..|+.+++......+       +.+...   ..++..+.+.+++. +..++-.|+.+|..+-.
T Consensus       235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~---D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~  310 (823)
T KOG2259|consen  235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK---DAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQ  310 (823)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH---HHHHHHHHHHHhcC-ceeeeehHHHHhchHHH
Confidence            36777888888888899888777666532221       222222   24556666666654 33344444444432211


Q ss_pred             CC---------------------------------------CC--------CCchhHHHHhcCcHHHHHHHhhccccchH
Q 038250          291 SA---------------------------------------SA--------TEKPIQKFVDMGLVSLLLEMLVDAQRSLC  323 (444)
Q Consensus       291 ~~---------------------------------------~~--------~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~  323 (444)
                      -.                                       +-        .++.-..++..|+-.+++.-|.+.--+++
T Consensus       311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR  390 (823)
T KOG2259|consen  311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR  390 (823)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence            10                                       00        01223345677888888888887778899


Q ss_pred             HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250          324 EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL  403 (444)
Q Consensus       324 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll  403 (444)
                      ++|+..+..|+....+-..     .++..||+++...-+.++..|+.+|..|+.+          -.+++.-++.+++.|
T Consensus       391 ~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~----------l~i~eeql~~il~~L  455 (823)
T KOG2259|consen  391 RAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH----------LAIREEQLRQILESL  455 (823)
T ss_pred             HHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH----------heecHHHHHHHHHHH
Confidence            9999999999874332211     3567888877666778899999999999884          223445566666666


Q ss_pred             hcCCChHHHHHHHHHHHHH
Q 038250          404 QVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       404 ~~~~~~~~k~~a~~ll~~l  422 (444)
                      ... +..+|+....+|...
T Consensus       456 ~D~-s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  456 EDR-SVDVREALRELLKNA  473 (823)
T ss_pred             Hhc-CHHHHHHHHHHHHhc
Confidence            666 666666655555443

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0025  Score=61.42  Aligned_cols=50  Identities=14%  Similarity=0.344  Sum_probs=40.4

Q ss_pred             CCccccccccccCcCce-----e---cCCcchhcHHHHHHHHHhcC-----CCCCCCCCcccC
Q 038250           34 PNHFRCPISLDLMKDPV-----T---LSTGITYDRENIEKWIHEDG-----NITCPVTNRVLT   83 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv-----~---~~cg~~~c~~ci~~~~~~~~-----~~~CP~c~~~~~   83 (444)
                      ..+..|.||++...++.     .   .+|.|.||..||..|-....     .+.||.|+....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            44689999999999887     3   47999999999999984333     478999986554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.7  Score=48.82  Aligned_cols=251  Identities=8%  Similarity=0.062  Sum_probs=147.4

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA  206 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~  206 (444)
                      +...|...+++.+.-++--|+.+|..++.. +-.|      +..|-+.++|+..       ++-++.+|+-++.......
T Consensus       108 ltNslknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~-------~~~irKKA~Lca~r~irK~  173 (866)
T KOG1062|consen  108 LTNSLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHR-------DPYIRKKAALCAVRFIRKV  173 (866)
T ss_pred             HHHHHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcC
Confidence            445666666656777788888888888743 1111      2446666777532       5778888877776555555


Q ss_pred             hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-------------C-
Q 038250          207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE-------------P-  272 (444)
Q Consensus       207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-------------~-  272 (444)
                      ++.-+.     .++....+|.+.+..+...++..+..++..+++.-... .  ..++-||..|++             + 
T Consensus       174 P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f-r--~l~~~lV~iLk~l~~~~yspeydv~gi  245 (866)
T KOG1062|consen  174 PDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF-R--DLVPSLVKILKQLTNSGYSPEYDVHGI  245 (866)
T ss_pred             chHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH-H--HHHHHHHHHHHHHhcCCCCCccCccCC
Confidence            554443     35566677777777777777777787877766655555 2  356666666651             1 


Q ss_pred             CChHHHHHHHHHHHHHhcCCCCC-----------------CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          273 ICPTATKASLVVVYRTITSASAT-----------------EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       273 ~~~~~~~~a~~aL~~L~~~~~~~-----------------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      .+|-.+...++.|+-|-.++.+.                 ++|....+=-.+|..++.+.  .+..+++.|+.+|+....
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~  323 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLL  323 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhc
Confidence            24666777777777776665421                 11222211111233333222  356777888888887766


Q ss_pred             ChhhHHHHhcCCCChH------------------HHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHH
Q 038250          336 SDYGRGDAYNNSLIFP------------------VIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQ  397 (444)
Q Consensus       336 ~~~~~~~i~~~~g~i~------------------~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~  397 (444)
                      +.++..+-    -++.                  .+++.|...+..++..|...+..|..      +.+++.     .+.
T Consensus       324 n~d~NirY----vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn------~~Nv~~-----mv~  388 (866)
T KOG1062|consen  324 NRDNNIRY----VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN------ESNVRV-----MVK  388 (866)
T ss_pred             CCccceee----eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc------cccHHH-----HHH
Confidence            55544332    1222                  33445555566666777777766665      233333     345


Q ss_pred             HHHHHHhcCCChHHHHHHHH
Q 038250          398 KLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       398 ~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      .|+++|.+. ++..|...+.
T Consensus       389 eLl~fL~~~-d~~~k~~~as  407 (866)
T KOG1062|consen  389 ELLEFLESS-DEDFKADIAS  407 (866)
T ss_pred             HHHHHHHhc-cHHHHHHHHH
Confidence            677777777 6666666555

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.26  E-value=0.007  Score=40.90  Aligned_cols=42  Identities=33%  Similarity=0.598  Sum_probs=32.7

Q ss_pred             ccccccc--cCcCceecCCc-----chhcHHHHHHHHHhcCCCCCCCCC
Q 038250           38 RCPISLD--LMKDPVTLSTG-----ITYDRENIEKWIHEDGNITCPVTN   79 (444)
Q Consensus        38 ~Cpic~~--~~~~Pv~~~cg-----~~~c~~ci~~~~~~~~~~~CP~c~   79 (444)
                      .|-||.+  .-.+|...+|.     +.+.+.|+.+|+...+..+||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4778886  44567777875     669999999999666678999985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.25  E-value=0.0032  Score=59.09  Aligned_cols=52  Identities=19%  Similarity=0.435  Sum_probs=40.5

Q ss_pred             CCCccccccccccCcC--c-eec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250           33 TPNHFRCPISLDLMKD--P-VTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP   87 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~--P-v~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l   87 (444)
                      -...|.|||+...|..  + |.+ +|||+|+..++.+.-   ....||.|+.++...++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCE
Confidence            4556999999999954  2 333 899999999999852   34569999999987653

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=96.13  E-value=0.0064  Score=44.39  Aligned_cols=44  Identities=23%  Similarity=0.465  Sum_probs=33.3

Q ss_pred             ccccccccCc----Cceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           38 RCPISLDLMK----DPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        38 ~Cpic~~~~~----~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .||-|+.-|.    -|+.- -|.|.|.-.||++|+  .....||.+++...
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL--~Tk~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL--DTKGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHH--hhCCCCCCCCceeE
Confidence            6777776442    24554 699999999999999  44678999988664

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.63  Score=51.21  Aligned_cols=221  Identities=11%  Similarity=0.053  Sum_probs=130.5

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEP  264 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~  264 (444)
                      +..+|.++-++|...+.. +.......+  ......|.+-+++.....+..++.+|..|-...+ +....+   .-.||-
T Consensus       667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i---~k~I~E  742 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI---PKLIPE  742 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH---HHHHHH
Confidence            578999999999954444 333322221  2334455555555566677777777766644333 566666   245666


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHhcCCCC--CCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhH
Q 038250          265 LFKLIKEPICPTATKASLVVVYRTITSASA--TEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGR  340 (444)
Q Consensus       265 Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~--~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~  340 (444)
                      ++=.++.. +...++.|..+|.+|+.....  .+..+    ..-.|...+.++..+  .......+.. |-.+..--...
T Consensus       743 vIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~  816 (1176)
T KOG1248|consen  743 VILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEF  816 (1176)
T ss_pred             HHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHH
Confidence            66556555 889999999999999831100  01112    111555666666544  2222222222 22222211222


Q ss_pred             HHHhcCCCChHHHHHH----HhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250          341 GDAYNNSLIFPVIVKK----ILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS  416 (444)
Q Consensus       341 ~~i~~~~g~i~~Lv~l----l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~  416 (444)
                      ..+ .+.+.++.+++.    |.+.+..+...|++.+..++..    .++....-...-.++.++.+++.. ....|.+..
T Consensus       817 ~~~-ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~----~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr  890 (1176)
T KOG1248|consen  817 KNI-LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK----FPEECLSPHLEELLPSLLALSHDH-KIKVRKKVR  890 (1176)
T ss_pred             hcc-ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc----CCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence            233 444455555544    4456888899999999998884    344555555566888888888777 788888888


Q ss_pred             HHHHHHHh
Q 038250          417 ELLKLLNP  424 (444)
Q Consensus       417 ~ll~~l~~  424 (444)
                      -++..|-+
T Consensus       891 ~LlekLir  898 (1176)
T KOG1248|consen  891 LLLEKLIR  898 (1176)
T ss_pred             HHHHHHHH
Confidence            87776644

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.02  E-value=0.34  Score=44.80  Aligned_cols=188  Identities=18%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-------cCC-CCh---HHHHHHHHHHHHHhcCCCCCCc
Q 038250          229 GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-------KEP-ICP---TATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       229 ~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-------~~~-~~~---~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      -+++.|+.|..-|..--...++..-.+=..-|.+..|++=+       ..+ .+.   .-+.+|+..|-.++++.+    
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe----   82 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE----   82 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT----
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH----
Confidence            36788888877777664444566666645667777776432       222 012   345677777889999987    


Q ss_pred             hhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCChhh-HHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSDYG-RGDAYNNSLIFPVIVKKILRVSDLATEFAVSI  371 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  371 (444)
                      .+..++++...-.|..+|...     -+.++-.++++++.|++.++. -..++.+.+.+|..++.|..+++..+..|.-+
T Consensus        83 tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfI  162 (262)
T PF04078_consen   83 TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFI  162 (262)
T ss_dssp             THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999988888888643     356788999999999984332 22335889999999999999999999999988


Q ss_pred             HHHHccccccchHHHHHHHHh--------hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          372 LWKLCKNEEREEKTAFAEALQ--------VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       372 L~~L~~~~~~~~~~~~~~~~~--------~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..+-..     +....-+++        ..++..++.-|...+++++=+...+...-++.+
T Consensus       163 lqKIL~d-----d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  163 LQKILLD-----DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHS-----HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcc-----hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            8887552     333322221        445566666555555777666666655555444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.98  E-value=0.31  Score=51.38  Aligned_cols=223  Identities=12%  Similarity=0.023  Sum_probs=145.6

Q ss_pred             cccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCC-HHHHHH
Q 038250          158 DRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGD-LSRRRN  236 (444)
Q Consensus       158 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~  236 (444)
                      ..-+...++.|+...|..+....       .......+..+|...++ .+..+.    ...++++...++... ..-.-.
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q-------~e~akl~~~~aL~~~i~-f~~~~~----~~v~~~~~s~~~~d~~~~en~E  561 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQ-------FEEAKLKWYHALAGKID-FPGERS----YEVVKPLDSALHNDEKGLENFE  561 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHh-------chHHHHHHHHHHhhhcC-CCCCch----hhhhhhhcchhhhhHHHHHHHH
Confidence            44566788889999999988422       24455555555541111 111111    345666666665543 222345


Q ss_pred             HHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHh
Q 038250          237 AVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEML  315 (444)
Q Consensus       237 A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL  315 (444)
                      +..++.||++.++..++.| ...-+++.+-.++... ++..+++++..+.||..+..   -....+++ ...++.....+
T Consensus       562 ~L~altnLas~s~s~r~~i-~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~---~~e~si~e~~~~l~~w~~~~  636 (748)
T KOG4151|consen  562 ALEALTNLASISESDRQKI-LKEKALGKIEELMTEE-NPALQRAALESIINLLWSPL---LYERSIVEYKDRLKLWNLNL  636 (748)
T ss_pred             HHHHhhcccCcchhhHHHH-HHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHH---HHHHHhhccccCchHHHHHH
Confidence            8999999988888888887 4455666655555555 78999999999999998875   23445566 56777777777


Q ss_pred             hccccchHHHHHHHHHHhcCChhhHHH-HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhC
Q 038250          316 VDAQRSLCEKALSVLDGLCSSDYGRGD-AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVG  394 (444)
Q Consensus       316 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g  394 (444)
                      ...++...-++++++..+....++... +.........++.++.+.++.+|...+....++..    ...+....+....
T Consensus       637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~  712 (748)
T KOG4151|consen  637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETE  712 (748)
T ss_pred             HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccch
Confidence            776777777888888877765655554 43445677888888888888888877777777554    2344444444555


Q ss_pred             hHHHHHH
Q 038250          395 AFQKLLL  401 (444)
Q Consensus       395 ~l~~Ll~  401 (444)
                      ..+.+..
T Consensus       713 ~~~~l~~  719 (748)
T KOG4151|consen  713 VMELLSG  719 (748)
T ss_pred             HHHHHHH
Confidence            5554444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.094  Score=53.98  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=111.4

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhc---ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLD---IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~---~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  292 (444)
                      ...+|.|..+|.+.+....+-|..+|..++..+.+.-+.=..   -+-.||.+++..+++ ++..+..|+.++-......
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence            456899999999999899999999999997554432221000   124789999999999 8999999999888776654


Q ss_pred             CCCCchhHHHHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250          293 SATEKPIQKFVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI  371 (444)
Q Consensus       293 ~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  371 (444)
                           +...++. -..++.|..+-.+.+++++++.+.+|..|...-..+..= -=.++|+.++...+..++.+.-.|+..
T Consensus       206 -----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEF  279 (885)
T KOG2023|consen  206 -----TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEF  279 (885)
T ss_pred             -----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHH
Confidence                 2444443 346666777777789999999999999887533222211 113556666665556677788888999


Q ss_pred             HHHHccc
Q 038250          372 LWKLCKN  378 (444)
Q Consensus       372 L~~L~~~  378 (444)
                      ...+|..
T Consensus       280 wla~aeq  286 (885)
T KOG2023|consen  280 WLALAEQ  286 (885)
T ss_pred             HHHHhcC
Confidence            8888874

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.93  E-value=0.36  Score=42.54  Aligned_cols=93  Identities=25%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHH
Q 038250          230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVS  309 (444)
Q Consensus       230 ~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~  309 (444)
                      ++.+|.+++.+++.|+...+..   +   ...++.+...|+++ ++.+++.|+.+|..|...+-    .+.   +...+.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~---v---e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~----ik~---k~~l~~   66 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNL---V---EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM----IKV---KGQLFS   66 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHH---H---HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc----eee---hhhhhH
Confidence            4678999999999997555443   2   35589999999999 89999999999999987653    221   122347


Q ss_pred             HHHHHhhccccchHHHHHHHHHHhcCC
Q 038250          310 LLLEMLVDAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       310 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~  336 (444)
                      .++.+|.+.++.++..|...+..+...
T Consensus        67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   67 RILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            888889999999999999999999874

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.90  E-value=0.22  Score=53.36  Aligned_cols=268  Identities=13%  Similarity=0.078  Sum_probs=142.9

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL  205 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~  205 (444)
                      .+++++.++    |.+.+.-|..-|..-...+..+-+.=-+...+..|+++|+.   .    +.+||..|+.+|+-+.+.
T Consensus         9 ~Llekmtss----DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~----ngEVQnlAVKClg~lvsK   77 (1233)
T KOG1824|consen    9 NLLEKMTSS----DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---K----NGEVQNLAVKCLGPLVSK   77 (1233)
T ss_pred             HHHHHccCC----CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---c----CcHHHHHHHHHHHHHHhh
Confidence            677888776    77777777766655443332222222344688889999943   2    689999999999943322


Q ss_pred             ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-h----hHHHhhcccccHHHHHHHhcCCC-ChHHHH
Q 038250          206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-R----KVNVLLDIEGAIEPLFKLIKEPI-CPTATK  279 (444)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~----~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~  279 (444)
                      -.+.+-    ...+..|..-+-++....+.-+.-.|....+.-+ .    +...+ - .-+.|.|.+-+.... ...++-
T Consensus        78 vke~~l----e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV-~-~~~t~~l~~~i~~qe~~sai~~  151 (1233)
T KOG1824|consen   78 VKEDQL----ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATV-C-KRITPKLKQAISKQEDVSAIKC  151 (1233)
T ss_pred             chHHHH----HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHH-H-HHHHHHHHHHhhhcccchhhHH
Confidence            222221    0112333333223434444333333332222222 1    11112 1 123444444443321 223555


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      .++..|..+-+.-.   ..-.. ...+.+..++.-|.+....++++|+.+|+.|+... ++...   .+.+..|++-|..
T Consensus       152 e~lDil~d~lsr~g---~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly---~~li~~Ll~~L~~  223 (1233)
T KOG1824|consen  152 EVLDILADVLSRFG---TLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLY---VELIEHLLKGLSN  223 (1233)
T ss_pred             HHHHHHHHHHHhhc---ccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHH---HHHHHHHHhccCC
Confidence            55555554332211   01111 34566677777777778889999999999998632 22222   1345555554433


Q ss_pred             c-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH---hcCCChHHHHHHHHHHHHHHh
Q 038250          360 V-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL---QVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       360 ~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll---~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      . ++....--+..|..+|+..+.     +..-.-...++.+.+..   +.+ +++.|+.+...+..|-+
T Consensus       224 ~~q~~~~rt~Iq~l~~i~r~ag~-----r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  224 RTQMSATRTYIQCLAAICRQAGH-----RFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLR  286 (1233)
T ss_pred             CCchHHHHHHHHHHHHHHHHhcc-----hhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHH
Confidence            2 334445555666677764321     22222355677777777   555 78999999987777643

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.89  E-value=0.43  Score=48.30  Aligned_cols=157  Identities=14%  Similarity=0.123  Sum_probs=115.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCC
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      ....+..++.+++...|..|...|..+ +.+....+.+ ....++..|.++++++.   +.+.....+.++..+-.+.- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d~~fa~ef-i~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLDPTFAEEF-IRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHH-HhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            356677888899988988899999999 6677666666 34688999999999883   24566666777766655432 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhhc--cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL  372 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  372 (444)
                         .-...+...+|.....+..-  -+..+-..|+..|.++..++....+.+.+.--+..|+..++.++..++..|...+
T Consensus       161 ---vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~  237 (713)
T KOG2999|consen  161 ---VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL  237 (713)
T ss_pred             ---eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence               22233344455555555532  2566788999999999988876666668888999999999998888888888888


Q ss_pred             HHHccccc
Q 038250          373 WKLCKNEE  380 (444)
Q Consensus       373 ~~L~~~~~  380 (444)
                      -.+-...+
T Consensus       238 nal~~~a~  245 (713)
T KOG2999|consen  238 NALFRKAP  245 (713)
T ss_pred             HHHHhhCC
Confidence            88776654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.75  E-value=0.0074  Score=40.15  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             cccccccCcC--ceec--CCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           39 CPISLDLMKD--PVTL--STGITYDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        39 Cpic~~~~~~--Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      ||+|-+.+..  --..  +||+-.|+.|..+-. +.+...||.|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~-~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL-ENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHT-TSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHH-hccCCCCCCCCCCC
Confidence            7888887721  1122  689999999988877 45678999999865

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.73  E-value=0.067  Score=55.65  Aligned_cols=149  Identities=12%  Similarity=0.151  Sum_probs=105.4

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH---HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV---NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~---~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ..+..+++.|++.++.++++|+.++..|+. .-..+   +.+ ...|.|  |..-|... .+++.-..++||..+.....
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m-~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLM-GHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHH-HHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcc
Confidence            345667778888999999999999999852 22222   223 223432  55666666 78998888888888875542


Q ss_pred             CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh----hHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250          294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY----GRGDAYNNSLIFPVIVKKILRVSDLATEFAV  369 (444)
Q Consensus       294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~  369 (444)
                         ..+..==-.|.+|.|.-+|++.++.++++++.++..++....    .|+.+    ...-.|+++|.+.+...+..|.
T Consensus       874 ---m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM----RIcfeLlelLkahkK~iRRaa~  946 (1172)
T KOG0213|consen  874 ---MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM----RICFELLELLKAHKKEIRRAAV  946 (1172)
T ss_pred             ---ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence               111111225789999999999999999999999999997443    34444    2344677878777888888888


Q ss_pred             HHHHHHcc
Q 038250          370 SILWKLCK  377 (444)
Q Consensus       370 ~~L~~L~~  377 (444)
                      .++.-++.
T Consensus       947 nTfG~Iak  954 (1172)
T KOG0213|consen  947 NTFGYIAK  954 (1172)
T ss_pred             hhhhHHHH
Confidence            88877776

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.65  E-value=0.012  Score=39.95  Aligned_cols=45  Identities=24%  Similarity=0.490  Sum_probs=25.8

Q ss_pred             cccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcc
Q 038250           37 FRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRV   81 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~   81 (444)
                      +.||++...+..|+-- .|.|.  |....+.......+...||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            6899999999999986 79986  665555554434566899999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.011  Score=57.07  Aligned_cols=48  Identities=21%  Similarity=0.510  Sum_probs=38.9

Q ss_pred             CCCCccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCC--CCCCCCCc
Q 038250           32 TTPNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGN--ITCPVTNR   80 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c~~   80 (444)
                      .+..-|.|||-.+--.+   |+.+.|||..++..+.+.- ..|.  +.||.|-.
T Consensus       330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS-~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLS-KNGSQSFKCPYCPV  382 (394)
T ss_pred             cccceeecccchhhccCCCCCeeeeccceecHHHHHHHh-hCCCeeeeCCCCCc
Confidence            34445899998887663   8899999999999999977 5666  88999943

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=95.63  E-value=0.025  Score=54.95  Aligned_cols=51  Identities=27%  Similarity=0.453  Sum_probs=43.9

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      +.|.|.+++-++||.- ..||.|+++-|++|+  ..+..||+.+++++..++.+
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI--~e~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYI--AETGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHH--HHcCCCCCCCCcCCHHHeee
Confidence            4799999999999987 589999999999999  56678999999988665443

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.62  E-value=2.2  Score=42.38  Aligned_cols=212  Identities=12%  Similarity=0.102  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH---HHHhhcCCChhhhhhccc-CCcHH
Q 038250          145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS---TLTLLFPLAGEGLTYLGS-ASSMR  220 (444)
Q Consensus       145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~---~L~~~l~~~~~~~~~i~~-~g~i~  220 (444)
                      +|++.|..+....+..-..+.+.||+..+++.|+..          +. .+..   .-...-...++.+..... .....
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E----------v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   71 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE----------VD-FALEENKNEEAGSGIPPEYKESSVDGYSISY   71 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH----------HH-HHHhcccccCCCCCCCCCcccccccccccCH
Confidence            466777777766666677888999999999999421          11 1111   000000111122222221 11100


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHh---c-chhhHHHhhcccccHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCCCC
Q 038250          221 CMVWFLKSGDLSRRRNAVLVLREIVS---S-DHRKVNVLLDIEGAIEPLFKLIKEPI--CPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s---~-~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      .=        ........++|..+..   . .+..|..+ +....+..|-.++++..  .+.+...|+..+.....++. 
T Consensus        72 ~r--------~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~neP-  141 (379)
T PF06025_consen   72 QR--------QQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEP-  141 (379)
T ss_pred             HH--------HHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCC-
Confidence            00        0111122233333322   1 22344444 32345566667777652  26788888888888888876 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhh-cc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh-------h
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLV-DA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD-------L  363 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~-~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-------~  363 (444)
                        ..-..+.++|.++.+++.+. .+   +.++.-..-.+|..||-+..+.+.+ .+.+.++.+++++.+..-       .
T Consensus       142 --T~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~-~~~~~l~~~f~if~s~~~~~~l~~~d  218 (379)
T PF06025_consen  142 --TSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKV-KSSNPLDKLFEIFTSPDYVKALRRRD  218 (379)
T ss_pred             --chhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHH-HhcChHHHHHHHhCCHHHHHHhcccc
Confidence              46667788999999999998 44   5566666778899999999999999 888999999998875311       1


Q ss_pred             HHHHHHHHHHHHccccc
Q 038250          364 ATEFAVSILWKLCKNEE  380 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~  380 (444)
                      ....--..+-.|.+|.|
T Consensus       219 ~a~~lG~~~DEL~RH~p  235 (379)
T PF06025_consen  219 TASNLGNSFDELMRHHP  235 (379)
T ss_pred             hHHHHHHHHHHHHccCH
Confidence            22233345566777655

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.55  E-value=0.8  Score=48.93  Aligned_cols=163  Identities=12%  Similarity=0.148  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL  268 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l  268 (444)
                      ...+..|+.-+...+...++-      ....+.+++...+.+.++|...---|...+..+++. ..+     ++..+.+=
T Consensus        33 ~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL-----avNti~kD  100 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL-----AVNTIQKD  100 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH-----HHHHHHhh
Confidence            333444444333344444441      233566677666788999988888888886666532 222     35677777


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250          269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL  348 (444)
Q Consensus       269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  348 (444)
                      ++++ ++..+..|++++.-|=         ...+.. .+++++.+++.++++.++..|+-++..|=.-+   ...+.+.|
T Consensus       101 l~d~-N~~iR~~AlR~ls~l~---------~~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g  166 (757)
T COG5096         101 LQDP-NEEIRGFALRTLSLLR---------VKELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELG  166 (757)
T ss_pred             ccCC-CHHHHHHHHHHHHhcC---------hHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---Hhhhhccc
Confidence            8888 8999988877776652         223333 37899999999999999999999999886422   23336778


Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          349 IFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      .+..+..++...++.+..+|+.+|..+..
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            88899888888899999999999988875

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.51  E-value=0.8  Score=44.57  Aligned_cols=206  Identities=10%  Similarity=0.089  Sum_probs=143.5

Q ss_pred             hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-----HHHhhcc-cccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250          212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-----VNVLLDI-EGAIEPLFKLIKEPICPTATKASLVVV  285 (444)
Q Consensus       212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-----~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL  285 (444)
                      .+...|.+..|+..|..-+-+.+..++.+..++.......     .+.+... ..++..|+.--+   +++..-.+-..|
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence            3344688999999999999999999999999996543322     3344233 345555555444   456777778889


Q ss_pred             HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc-CChhhHHHHhcC--CCChHHHHHHHhhcCh
Q 038250          286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC-SSDYGRGDAYNN--SLIFPVIVKKILRVSD  362 (444)
Q Consensus       286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~ll~~~~~  362 (444)
                      +..+.++.    ....+.+...+..+.+.+..++-++...|..++..|- .+..--.+.+..  ...+..+.++|.+++-
T Consensus       148 Rec~k~e~----l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY  223 (335)
T PF08569_consen  148 RECIKHES----LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY  223 (335)
T ss_dssp             HHHTTSHH----HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred             HHHHhhHH----HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence            99998876    7888888889999999999888899999999999754 455444444211  1245566677777788


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ..+..++..|..|-....  +-.....-+ +..-+..++.+|++. +..++-.|--+.+.+....+
T Consensus       224 vtkrqslkLL~ellldr~--n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRS--NFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGG--GHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS
T ss_pred             EeehhhHHHHHHHHHchh--HHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCC
Confidence            889999999999886422  123333333 566677778888888 99999999999999987654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.46  E-value=0.56  Score=49.53  Aligned_cols=203  Identities=10%  Similarity=-0.008  Sum_probs=133.4

Q ss_pred             ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHH-HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLR-EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      ...-+...++.|+...|+.+...+..+.+..+..+|. .+ + .+..+     ....++++...+.....-...-.++.+
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~-f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~a  565 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-D-FPGER-----SYEVVKPLDSALHNDEKGLENFEALEA  565 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-C-CCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence            3344567778999999999998888888888887777 33 1 11111     124566776666654222344557888


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC-CCChHHHHHHHhhcChh
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN-SLIFPVIVKKILRVSDL  363 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~  363 (444)
                      +.||++.++   ..+..+...-+++.+-.++.+.++..+..++..+.||.-++.-....+++ ...++.....+......
T Consensus       566 ltnLas~s~---s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  566 LTNLASISE---SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             hhcccCcch---hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            999998876   46777888888888778888889999999999999999988877777666 45666666655544445


Q ss_pred             HHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHH-HHHHHH
Q 038250          364 ATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLN  423 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~  423 (444)
                      ..-.+++++..|+...    +.....+. -......++.++.+. +..++..-.. .++++.
T Consensus       643 ~~lA~a~a~a~I~sv~----~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  643 FELAGAGALAAITSVV----ENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFE  699 (748)
T ss_pred             Hhhhccccccchhhcc----hhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHH
Confidence            5555666666555432    22222111 244556666677666 5555544444 555443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.45  E-value=2  Score=39.26  Aligned_cols=210  Identities=9%  Similarity=0.090  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHh-h---cccccc-cchHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFET-F---SKTCLD-ENVSVLEE  194 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~-~---~~~~~~-~~~~~~~~  194 (444)
                      .+.+..++-.+.+.      ..++.|+..|.+--+..+.-...+-. -|.+..|++-.-. +   +....+ ....=...
T Consensus        25 ~dk~~~~i~~l~~~------p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcn   98 (293)
T KOG3036|consen   25 NDKAYQLILSLVSP------PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCN   98 (293)
T ss_pred             ccchhhHHHHhhCC------chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHH
Confidence            34455666666553      46777888777765544444444433 3655555543211 1   111111 11223457


Q ss_pred             HHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHH
Q 038250          195 ILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG-----DLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKL  268 (444)
Q Consensus       195 a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~l  268 (444)
                      |+..|. .++.+++.|..+.++..--.|-.+|...     ....|-.+..+|+.|...++ +.-..+ ...++||..++.
T Consensus        99 aL~LlQ-cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fL-l~TeIVPlCLri  176 (293)
T KOG3036|consen   99 ALALLQ-CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFL-LTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHH-HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHH-HHhhhHHHHHHH
Confidence            788887 8888999999998887655566666532     46788889999999976555 333444 457999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-c---C----cHHHHH-HHhhccccchHHHHHHHHHHhcCChhh
Q 038250          269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-M---G----LVSLLL-EMLVDAQRSLCEKALSVLDGLCSSDYG  339 (444)
Q Consensus       269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~---g----~v~~Lv-~lL~~~~~~~~~~a~~~L~~L~~~~~~  339 (444)
                      ++.+ +...+..|...+..+-.++.    .-..+-+ .   -    .+..++ ++.+.++..+.++++....+|+..+..
T Consensus       177 me~G-SelSKtvA~fIlqKIlldD~----GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra  251 (293)
T KOG3036|consen  177 MESG-SELSKTVATFILQKILLDDV----GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA  251 (293)
T ss_pred             Hhcc-cHHHHHHHHHHHHHHhhccc----cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence            9999 67788888887777766654    2222211 1   1    222222 333456888899999999999999988


Q ss_pred             HHHH
Q 038250          340 RGDA  343 (444)
Q Consensus       340 ~~~i  343 (444)
                      |..+
T Consensus       252 r~aL  255 (293)
T KOG3036|consen  252 RAAL  255 (293)
T ss_pred             HHHH
Confidence            8877

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.49  Score=49.73  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             ccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          186 DENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       186 ~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      ++++.++..|++.+. .+..  +...    .-...+|...++++++.++..|+....++ .  ....+.. ...|.++.|
T Consensus        97 d~np~iR~lAlrtm~-~l~v--~~i~----ey~~~Pl~~~l~d~~~yvRktaa~~vakl-~--~~~~~~~-~~~gl~~~L  165 (734)
T KOG1061|consen   97 DPNPLIRALALRTMG-CLRV--DKIT----EYLCDPLLKCLKDDDPYVRKTAAVCVAKL-F--DIDPDLV-EDSGLVDAL  165 (734)
T ss_pred             CCCHHHHHHHhhcee-eEee--hHHH----HHHHHHHHHhccCCChhHHHHHHHHHHHh-h--cCChhhc-cccchhHHH
Confidence            347888888888777 3322  2111    23478888999999999999999999888 2  3344555 567999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          266 FKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      -+++.+. ++.+..+|+.+|..+...+.
T Consensus       166 ~~ll~D~-~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  166 KDLLSDS-NPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHhcCC-CchHHHHHHHHHHHHHHhCC
Confidence            9999977 89999999999999987764

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.012  Score=54.32  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=37.6

Q ss_pred             cccccccc-CcCcee----cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           38 RCPISLDL-MKDPVT----LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        38 ~Cpic~~~-~~~Pv~----~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .||+|.-- +.+|-.    -+|||+.|.+|+.+.| ..|...||.|+..+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF-~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIF-SLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHH-hcCCCCCCcccchhhhc
Confidence            48888754 556621    2899999999999999 78999999999887654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.42  E-value=0.14  Score=40.11  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250          259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  334 (444)
                      .-++++++..+.+. +..++..|+.+|+|++...      +..+..  ....+.|.+++.+.++.++..| ..|-+|-
T Consensus        26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~------~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVA------RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            36799999999998 8999999999999999764      444443  4578888898888888876544 6666654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.41  E-value=0.0047  Score=45.30  Aligned_cols=48  Identities=19%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             ccccccccccCc-C---ceec----CCcchhcHHHHHHHHHhc--C-------CCCCCCCCcccC
Q 038250           36 HFRCPISLDLMK-D---PVTL----STGITYDRENIEKWIHED--G-------NITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~-~---Pv~~----~cg~~~c~~ci~~~~~~~--~-------~~~CP~c~~~~~   83 (444)
                      +..|+||...+. +   |...    .|+.+|...|+.+||...  .       .+.||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            467999998765 2   4443    589999999999999531  1       135999998764

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.39  E-value=0.24  Score=43.86  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCccc-chhHhhcCchHHHHHHHHhhccc--ccccchHHHHHHHHH
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRN-KRCIVDNGAVSVLAEAFETFSKT--CLDENVSVLEEILST  198 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~--~~~~~~~~~~~a~~~  198 (444)
                      .....+++.|.+.    .  .....+..|+...+..+.. -+.+++.||+..|+++|......  ...++.+.+..++.+
T Consensus        66 ~~p~~~i~~L~~~----~--~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C  139 (187)
T PF06371_consen   66 SSPEWYIKKLKSR----P--STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC  139 (187)
T ss_dssp             HHHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcc----C--ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence            4455677777664    1  2225666676665554433 34677889999999999754211  112356788999999


Q ss_pred             HHhhcCCChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          199 LTLLFPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       199 L~~~l~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      |..++ ++..... .+...+++..|+..|.+.+..++..++.+|..+|
T Consensus       140 lkal~-n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  140 LKALM-NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT-SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHH-ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            99444 4455444 4556899999999999999999999999998874

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.39  E-value=2.3  Score=46.11  Aligned_cols=249  Identities=13%  Similarity=0.172  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhh-cccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF-SKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      .+..++..|.+...-.........+..|...|..-+.||+.+.+.|+++.|+..|... .........++-+..+.++..
T Consensus       118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~  197 (802)
T PF13764_consen  118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES  197 (802)
T ss_pred             CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence            3556666665532111123334444444444444588999999999999999988532 111000124566666666653


Q ss_pred             hcCCChhhh-----hhcccCC----c---HHHHHHHHhcC----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          202 LFPLAGEGL-----TYLGSAS----S---MRCMVWFLKSG----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       202 ~l~~~~~~~-----~~i~~~g----~---i~~Lv~lL~~~----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      +++......     ......|    .   +..|++.+.+.    ++.+....+++|-+|+-++++..+.+.   .-+.+.
T Consensus       198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv---~~F~p~  274 (802)
T PF13764_consen  198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV---EHFKPY  274 (802)
T ss_pred             HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH---HHHHHh
Confidence            333221111     1111111    3   55555555543    578888999999999877777666662   223443


Q ss_pred             HHHhcC--CCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhccc----------------cchHH
Q 038250          266 FKLIKE--PICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDAQ----------------RSLCE  324 (444)
Q Consensus       266 v~ll~~--~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~~----------------~~~~~  324 (444)
                      +++=+-  ...++. +.-+..+..++.+-.++   ...+..+++.|++...++.|...-                .....
T Consensus       275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp  353 (802)
T PF13764_consen  275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP  353 (802)
T ss_pred             cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence            332111  101111 22355555555443221   246888999999999999986432                22345


Q ss_pred             HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHcc
Q 038250          325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCK  377 (444)
Q Consensus       325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~  377 (444)
                      .++..|.-|+.+......+ ....+|+.+ ..|...  ...+=..|-.+|-.|+.
T Consensus       354 ~iL~lL~GLa~gh~~tQ~~-~~~~~l~~l-H~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  354 YILRLLRGLARGHEPTQLL-IAEQLLPLL-HRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHhcCHHHHHH-HHhhHHHHH-HHhhcCCCccchHHHHHHHHHHHhc
Confidence            6778888888755544444 445566443 445432  22222334344444444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.25  E-value=0.12  Score=52.84  Aligned_cols=148  Identities=12%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      -.+..++.+|++..+.++++|+.+...|+..-.   +.+ .+ ...|.  .|.+-|... .+++.-..+.|+..+.+...
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l-~klg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~  678 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-EL-AKLGN--ILYENLGED-YPEVLGSILKAICSIYSVHR  678 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HH-HHHhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhc
Confidence            346777788899999999999999888842111   111 12 12232  244555555 78998888888888866543


Q ss_pred             CCCchhH-HHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh----hHHHHhcCCCChHHHHHHHhhcChhHHHHH
Q 038250          294 ATEKPIQ-KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY----GRGDAYNNSLIFPVIVKKILRVSDLATEFA  368 (444)
Q Consensus       294 ~~~~~~~-~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a  368 (444)
                          .+. +==-.|.+|.|.-+|++.+..++++.+..+..++....    .|+.+    ...-.|+++|.+.+...+.+|
T Consensus       679 ----~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM----RIcfeLvd~Lks~nKeiRR~A  750 (975)
T COG5181         679 ----FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM----RICFELVDSLKSWNKEIRRNA  750 (975)
T ss_pred             ----ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHhhHHHHHhh
Confidence                111 11235899999999999999999999999999997443    23333    234467788888888888888


Q ss_pred             HHHHHHHcc
Q 038250          369 VSILWKLCK  377 (444)
Q Consensus       369 ~~~L~~L~~  377 (444)
                      ..++.-++.
T Consensus       751 ~~tfG~Is~  759 (975)
T COG5181         751 TETFGCISR  759 (975)
T ss_pred             hhhhhhHHh
Confidence            888877776

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.21  E-value=0.47  Score=43.86  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-hhhhhcccCCcH
Q 038250          141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLTYLGSASSM  219 (444)
Q Consensus       141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~~i~~~g~i  219 (444)
                      ...-.|+.-|+-+|.+ ++.|..+.++...--|--+|...+..  .+-..++-..+++++.++..++ +.-..+.+.+.+
T Consensus        65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~--r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEii  141 (262)
T PF04078_consen   65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKT--RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEII  141 (262)
T ss_dssp             HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S--HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHH
T ss_pred             HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccc--cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchH
Confidence            3556777888888875 77999999999877777888532111  2234567788888886666544 455667789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-------cccHHHHHHH-hcCCCChHHHHHHHHHHHHHhcC
Q 038250          220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-------EGAIEPLFKL-IKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-------~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      |..+..+..|+.-.|.-|..++..+..++. .-+.+...       ..++..+|.- .+++ ++...++..++...|+.+
T Consensus       142 plcLr~me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  142 PLCLRIMEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC
Confidence            999999999999999999999999965444 22222121       2334444433 3355 799999999999999988


Q ss_pred             CCCCCchhHHHH
Q 038250          292 ASATEKPIQKFV  303 (444)
Q Consensus       292 ~~~~~~~~~~i~  303 (444)
                      ..    .+..+.
T Consensus       220 pr----ar~aL~  227 (262)
T PF04078_consen  220 PR----AREALR  227 (262)
T ss_dssp             TT----HHHHHH
T ss_pred             HH----HHHHHH
Confidence            75    555444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.18  E-value=3.2  Score=40.01  Aligned_cols=195  Identities=16%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC--CCCC
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS--ASAT  295 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~  295 (444)
                      +...+..|...+...|+.+...|.++...... -+.+. ...-++..+.+.++.+ ..+-+..|+.++.-++..  ..  
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g--  120 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAG--  120 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCC--
Confidence            44455555666788999999999888644332 22221 1224577788888888 445566666666666544  11  


Q ss_pred             CchhHHHHhcCcHHHHHHHhhcccc--chHHHHHHHHHHhcC---Ch-hhHHHHhcCCCChHHHH--HHHhhc-------
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQR--SLCEKALSVLDGLCS---SD-YGRGDAYNNSLIFPVIV--KKILRV-------  360 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~---~~-~~~~~i~~~~g~i~~Lv--~ll~~~-------  360 (444)
                       .....+.+ ...|.|..++.+++.  .++..++.+|+.++.   .+ +.....+   ..+..+.  ..+..+       
T Consensus       121 -~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~  195 (309)
T PF05004_consen  121 -EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVA  195 (309)
T ss_pred             -ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCccccc
Confidence             14555555 478899999987644  344555656665543   11 1111110   0111110  111111       


Q ss_pred             ---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          361 ---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       361 ---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                         ++.+...|+.+-.-|...-+   ...+. ..-...++.|..+|++. +..+|-.|-..+.++-+...
T Consensus       196 ~~~~~~l~~aAL~aW~lLlt~~~---~~~~~-~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  196 AEDDAALVAAALSAWALLLTTLP---DSKLE-DLLEEALPALSELLDSD-DVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHhcCC---HHHHH-HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence               12344445444334443322   21222 22355689999999988 89999999888888865544

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=95.17  E-value=0.018  Score=52.33  Aligned_cols=45  Identities=33%  Similarity=0.522  Sum_probs=37.3

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRV   81 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~   81 (444)
                      ++||+......+|+.- .|||.|.|..|..++.......||+-+..
T Consensus       177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            7999999999999876 79999999999999933335679995443

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.022  Score=51.31  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=39.8

Q ss_pred             CCccccccccccCcCcee----cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250           34 PNHFRCPISLDLMKDPVT----LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP   87 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~----~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l   87 (444)
                      ...|.|||.+-.|..-+.    .+|||.|....+.+.-    ...|++|+..+...++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~dv  162 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDDV  162 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccCe
Confidence            455999999999987654    3899999988877643    4589999999987753

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.016  Score=57.08  Aligned_cols=51  Identities=16%  Similarity=0.391  Sum_probs=38.5

Q ss_pred             CCCccccccccccCc-----------------CceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           33 TPNHFRCPISLDLMK-----------------DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~-----------------~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ....--|+||.....                 +-+.++|.|.|.+.|+++|. +.-+-.||+||.++..
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WM-d~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWM-DTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHH-hhhcccCCccCCCCCC
Confidence            445568999986543                 13445899999999999999 4445689999998753

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.13  E-value=1.3  Score=42.00  Aligned_cols=242  Identities=10%  Similarity=0.003  Sum_probs=150.2

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhH-hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCI-VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      +.+++.+|...+   +.-.+.-|+..|..+... ++.|..+ .+.-.-..++.+++.+ -+    +.++|...+-++. +
T Consensus       150 fleyLgkl~Q~i---~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~-vg----~~qlQY~SL~~iw-~  219 (432)
T COG5231         150 FLEYLGKLSQLI---DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNY-VG----VKQLQYNSLIIIW-I  219 (432)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhh-hh----hhhhHHHHHHHHH-H
Confidence            345555555554   555667777888888755 4455543 3444556777888643 22    4788888888887 7


Q ss_pred             cCCChhhhhhccc-CCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCC--ChHH
Q 038250          203 FPLAGEGLTYLGS-ASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPI--CPTA  277 (444)
Q Consensus       203 l~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~  277 (444)
                      ++-+++.-+.|-+ .+.|..|+++.+.. ...+....+.++.|+++..+ .....+.. .|-+.+-|++|....  +++.
T Consensus       220 lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel  298 (432)
T COG5231         220 LTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEEL  298 (432)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHH
Confidence            8877776644433 46678888888765 45666778899999975332 33333323 355666677776441  2333


Q ss_pred             HHHHHHHHHHH-------hcCC-----------------CCC---CchhHHHHhc--CcHHHHHHHhhccccc-hHHHHH
Q 038250          278 TKASLVVVYRT-------ITSA-----------------SAT---EKPIQKFVDM--GLVSLLLEMLVDAQRS-LCEKAL  327 (444)
Q Consensus       278 ~~~a~~aL~~L-------~~~~-----------------~~~---~~~~~~i~~~--g~v~~Lv~lL~~~~~~-~~~~a~  327 (444)
                      +...-..=..|       |..+                 ..+   ..|...+.+.  ..+..|.++|+...+. ...-|+
T Consensus       299 ~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc  378 (432)
T COG5231         299 VIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVAC  378 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeH
Confidence            32222111111       1110                 000   1355566543  4788899999876544 233344


Q ss_pred             HHHHHhc-CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          328 SVLDGLC-SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       328 ~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      .=|..+. ..+|++.-+ ...|+=..++++|..++++++-.|+.++..+-.
T Consensus       379 ~Di~~~Vr~~PE~~~vl-~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         379 SDIFQLVRASPEINAVL-SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hhHHHHHHhCchHHHHH-HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            4455444 467777766 788999999999998999999999999877654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.12  E-value=0.016  Score=54.30  Aligned_cols=48  Identities=17%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             cccccccccCcC--c--eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           37 FRCPISLDLMKD--P--VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        37 ~~Cpic~~~~~~--P--v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      -.||+|.+.|.-  -  .-.+||+..|+.|..... +.-++.||.||....+.
T Consensus        15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~ir-q~lngrcpacrr~y~de   66 (480)
T COG5175          15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR-QNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccCcccccccccccCCcccCCcccHHHHHHHHHHH-hhccCCChHhhhhcccc
Confidence            359999998862  1  223699999999987655 45578999999877654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.014  Score=52.28  Aligned_cols=35  Identities=31%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHH
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWI   67 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~   67 (444)
                      +.+.-.|.+|++.++|||+++-||.||+.||.+++
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i   74 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI   74 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence            45556899999999999999999999999999987

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.07  E-value=0.24  Score=44.04  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             hhccccchHHHHHHHHHHhcCChhhHHHHhc--C-------------CCChHHHHHHHhhc------ChhHHHHHHHHHH
Q 038250          315 LVDAQRSLCEKALSVLDGLCSSDYGRGDAYN--N-------------SLIFPVIVKKILRV------SDLATEFAVSILW  373 (444)
Q Consensus       315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~-------------~g~i~~Lv~ll~~~------~~~~~~~a~~~L~  373 (444)
                      +.+.+......++.+|+||+..+++...++.  .             ...+..|++.+..+      ......+.+.+|.
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            3345566788999999999999998886521  1             23677788877662      2234588999999


Q ss_pred             HHccccccchHHHHHHHH--hhCh--HHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250          374 KLCKNEEREEKTAFAEAL--QVGA--FQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL  429 (444)
Q Consensus       374 ~L~~~~~~~~~~~~~~~~--~~g~--l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~  429 (444)
                      |+++.     ++.+.-.+  +.+.  +..|+.+++.. +..-|..++.++++++=..+.+
T Consensus        84 NlS~~-----~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   84 NLSQL-----PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             HhcCC-----HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH
Confidence            99995     56666666  4555  88999999888 8888888888999987544433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.03  E-value=0.21  Score=44.24  Aligned_cols=112  Identities=19%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------ccchHHHHHHHH
Q 038250          260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------QRSLCEKALSVL  330 (444)
Q Consensus       260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------~~~~~~~a~~~L  330 (444)
                      +....+++.+++.... .  ..+.-|...-....  -.....|++.||+..|+++|..-         +......++..|
T Consensus        66 ~~p~~~i~~L~~~~~~-~--~~L~~L~v~Lrt~~--~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl  140 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPST-S--KILKSLRVSLRTNP--ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL  140 (187)
T ss_dssp             HHHHHHHHHHTTT--H-H--HHHHHHHHHHHHS---HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCcc-H--HHHHHHHHHhccCC--chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence            4556677777665221 1  22333332222221  12577899999999999999732         235778899999


Q ss_pred             HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250          331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC  376 (444)
Q Consensus       331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  376 (444)
                      ..|.....|...++.+.+++..|+..|.+.+..++..++.+|..+|
T Consensus       141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  141 KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999888999999999998888999999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=3.5  Score=43.29  Aligned_cols=240  Identities=14%  Similarity=0.115  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh-hhhhcccCCcHH
Q 038250          142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMR  220 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~  220 (444)
                      ++..|+-+|-.|-+.+|   +.+-..+....++.+|...       +..+...+...+..++...++ .+.++.  -++.
T Consensus       164 vkqkaALclL~L~r~sp---Dl~~~~~W~~riv~LL~D~-------~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs  231 (938)
T KOG1077|consen  164 VKQKAALCLLRLFRKSP---DLVNPGEWAQRIVHLLDDQ-------HMGVVTAATSLIEALVKKNPESYKTCLP--LAVS  231 (938)
T ss_pred             HHHHHHHHHHHHHhcCc---cccChhhHHHHHHHHhCcc-------ccceeeehHHHHHHHHHcCCHHHhhhHH--HHHH
Confidence            45555555555555544   3344557888999999422       345555666666655555443 444332  1122


Q ss_pred             HHHHHHhc-------------CCHHHHHHHHHHHHHHHh-cchhhHHHhhcccccHHHHHHHhcCC---CCh---HHHHH
Q 038250          221 CMVWFLKS-------------GDLSRRRNAVLVLREIVS-SDHRKVNVLLDIEGAIEPLFKLIKEP---ICP---TATKA  280 (444)
Q Consensus       221 ~Lv~lL~~-------------~~~~~~~~A~~~L~~L~s-~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~---~~~~~  280 (444)
                      .|..+...             .++=.+..++++|.+.-. .++..+..+   ..++..++...++.   .++   -++.+
T Consensus       232 ~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l---~evl~~iLnk~~~~~~~k~vq~~na~na  308 (938)
T KOG1077|consen  232 RLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL---NEVLERILNKAQEPPKSKKVQHSNAKNA  308 (938)
T ss_pred             HHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH---HHHHHHHHhccccCccccchHhhhhHHH
Confidence            22221111             234466677777777721 122344444   24455555555422   111   12233


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-  359 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-  359 (444)
                      .+--..+|+.+-+   .....+++  ++..|-++|.+.+..++--|+..+..|+.+......+ ...  ...++..|.. 
T Consensus       309 VLFeaI~l~~h~D---~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~dav-K~h--~d~Ii~sLkte  380 (938)
T KOG1077|consen  309 VLFEAISLAIHLD---SEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAV-KKH--QDTIINSLKTE  380 (938)
T ss_pred             HHHHHHHHHHHcC---CcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHH-HHH--HHHHHHHhccc
Confidence            3333345665543   24555555  6889999999999999999999999999987777666 322  6677777773 


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250          360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS  416 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~  416 (444)
                      .+..+++.|+..|..+|..      ++...     +|..|++.|.+. +..+|+.-+
T Consensus       381 rDvSirrravDLLY~mcD~------~Nak~-----IV~elLqYL~tA-d~sireeiv  425 (938)
T KOG1077|consen  381 RDVSIRRRAVDLLYAMCDV------SNAKQ-----IVAELLQYLETA-DYSIREEIV  425 (938)
T ss_pred             cchHHHHHHHHHHHHHhch------hhHHH-----HHHHHHHHHhhc-chHHHHHHH
Confidence            5778899999999999983      33333     344566666665 555555433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.01  E-value=1.3  Score=45.29  Aligned_cols=216  Identities=10%  Similarity=0.000  Sum_probs=129.0

Q ss_pred             cchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------
Q 038250          187 ENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----------------  250 (444)
Q Consensus       187 ~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----------------  250 (444)
                      +|.+++..|..+|..++...-.--.-+.+.-....+.+.+++.++++..+|+..-..++...-+                
T Consensus       233 ~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~  312 (858)
T COG5215         233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH  312 (858)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence            3789999999999877766555444555555566777888999999999988776555422111                


Q ss_pred             --hHHHhhcccccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch
Q 038250          251 --KVNVLLDIEGAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL  322 (444)
Q Consensus       251 --~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~  322 (444)
                        .+..+   .+++|-|+.||...      ++-....+|..+|--.+...      ...|++. ++.-+=+-+++++-.-
T Consensus       313 ~fa~aav---~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~------gd~i~~p-Vl~FvEqni~~~~w~n  382 (858)
T COG5215         313 GFARAAV---ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK------GDKIMRP-VLGFVEQNIRSESWAN  382 (858)
T ss_pred             chHHHHH---HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh------hhHhHHH-HHHHHHHhccCchhhh
Confidence              11112   46899999999752      12234455555555444332      1222322 2222222334456667


Q ss_pred             HHHHHHHHHHhcCChh--hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHH
Q 038250          323 CEKALSVLDGLCSSDY--GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKL  399 (444)
Q Consensus       323 ~~~a~~~L~~L~~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~L  399 (444)
                      ++.|+.+++.+-..+.  .+..+ + ..++|.+..++...+--+++.++|++..|+.+        ..+++ ..|-++..
T Consensus       383 reaavmAfGSvm~gp~~~~lT~~-V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--------va~~i~p~~Hl~~~  452 (858)
T COG5215         383 REAAVMAFGSVMHGPCEDCLTKI-V-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH--------VAMIISPCGHLVLE  452 (858)
T ss_pred             HHHHHHHhhhhhcCccHHHHHhh-H-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH--------HHHhcCccccccHH
Confidence            8999999998765433  23333 2 36788888877655667889999999999984        44444 34444444


Q ss_pred             HHHHhcC--CChHHHHHHHHHHHHH
Q 038250          400 LLLLQVG--CADKTKEHVSELLKLL  422 (444)
Q Consensus       400 l~ll~~~--~~~~~k~~a~~ll~~l  422 (444)
                      +.....|  ..+...-++.|..-.+
T Consensus       453 vsa~liGl~D~p~~~~ncsw~~~nl  477 (858)
T COG5215         453 VSASLIGLMDCPFRSINCSWRKENL  477 (858)
T ss_pred             HHHHHhhhhccchHHhhhHHHHHhH
Confidence            3322222  1355555666633333

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.014  Score=42.23  Aligned_cols=46  Identities=20%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             ccccccccCcC-ceec-CCcchhcHHHHHHHHHhcC-CCCCCCCCcccC
Q 038250           38 RCPISLDLMKD-PVTL-STGITYDRENIEKWIHEDG-NITCPVTNRVLT   83 (444)
Q Consensus        38 ~Cpic~~~~~~-Pv~~-~cg~~~c~~ci~~~~~~~~-~~~CP~c~~~~~   83 (444)
                      .||-|.-.=.| |.+. .|.|.|-..||.+|+..+. ...||.||+...
T Consensus        33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            45555544443 5555 6999999999999994333 368999998653

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.92  E-value=0.2  Score=44.64  Aligned_cols=123  Identities=11%  Similarity=0.020  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHhcchhhHH-Hhhc--------------ccccHHHHHHHhcCC-----CChHHHHHHHHHHHHHhc
Q 038250          231 LSRRRNAVLVLREIVSSDHRKVN-VLLD--------------IEGAIEPLFKLIKEP-----ICPTATKASLVVVYRTIT  290 (444)
Q Consensus       231 ~~~~~~A~~~L~~L~s~~~~~~~-~i~~--------------~~g~i~~Lv~ll~~~-----~~~~~~~~a~~aL~~L~~  290 (444)
                      ......++.+|.||+ ..+..+. .+..              ....+..|+..+..+     ....-....+.++.|++.
T Consensus         9 ~~~adl~~MLLsNlT-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    9 SPLADLACMLLSNLT-RSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             cchHHHHHHHHHHhc-cchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            344566788888884 4444444 2211              123677788877662     124567788999999999


Q ss_pred             CCCCCCchhHHHHhc--Cc--HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCC--CChHHHHHHHh
Q 038250          291 SASATEKPIQKFVDM--GL--VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNS--LIFPVIVKKIL  358 (444)
Q Consensus       291 ~~~~~~~~~~~i~~~--g~--v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--g~i~~Lv~ll~  358 (444)
                      ..+    .|..+.+.  +.  +..|+..+.+.+..-+.-++++|.|+|-..+.+..++.+.  ..+|.|+--|.
T Consensus        88 ~~~----gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPE----GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHH----HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            987    88888864  34  5666666666666667899999999999888888884432  45555544443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=94.89  E-value=0.55  Score=44.29  Aligned_cols=185  Identities=17%  Similarity=0.105  Sum_probs=107.4

Q ss_pred             HHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC--CcHHHHHHHHhcC----CHHHHHHHHHHHHHH
Q 038250          171 SVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA--SSMRCMVWFLKSG----DLSRRRNAVLVLREI  244 (444)
Q Consensus       171 ~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~--g~i~~Lv~lL~~~----~~~~~~~A~~~L~~L  244 (444)
                      ..+..++.+|       ..+-+-.++-+++ ++..++..-..+...  +....+..++...    .+..+..+++++.|+
T Consensus        66 ~~~~~~~~~W-------p~~~~fP~lDLlR-l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl  137 (268)
T PF08324_consen   66 ILLLKILLSW-------PPESRFPALDLLR-LAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL  137 (268)
T ss_dssp             HHHHHHHCCS--------CCC-HHHHHHHH-HHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-------CCccchhHHhHHH-HHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Confidence            4455555445       2334566777777 555566554444332  2355555555443    577788899999999


Q ss_pred             HhcchhhHHHhhcccc-cHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhc--
Q 038250          245 VSSDHRKVNVLLDIEG-AIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVD--  317 (444)
Q Consensus       245 ~s~~~~~~~~i~~~~g-~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~--  317 (444)
                       -.++..+..+....+ .|...+..+....   +..++..++..+.|++..-.   .++ ..-.....+..+++.+..  
T Consensus       138 -F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~---~~~~~~~~~~~ll~~i~~~~~~~~  213 (268)
T PF08324_consen  138 -FSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLH---KNRSDEEWQSELLSSIIEVLSREE  213 (268)
T ss_dssp             -TTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHH---HCTS-CCHHHHHHHHHHHHCHCCH
T ss_pred             -hCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhcccc
Confidence             556666766645444 4444444444432   46778888888889986632   011 111122245666664432  


Q ss_pred             cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--cChhHHHHH
Q 038250          318 AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--VSDLATEFA  368 (444)
Q Consensus       318 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a  368 (444)
                      .++++.-+++.+|++|...+...... ...-.+...+....+  ..+++++.+
T Consensus       214 ~d~Ea~~R~LvAlGtL~~~~~~~~~~-~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  214 SDEEALYRLLVALGTLLSSSDSAKQL-AKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             TSHHHHHHHHHHHHHHHCCSHHHHHH-CCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccChhHHHH-HHHcChHHHHHHHHhcccchHHHHHh
Confidence            48889999999999999877777777 443334444333332  244555443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.87  E-value=0.37  Score=44.72  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHH
Q 038250          232 SRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLL  311 (444)
Q Consensus       232 ~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~L  311 (444)
                      .....|..+|..++=.++..+..++ ....+..|+++|+....+.++.+++.+|..+..+..   .|...+-+.||+..+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~-r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p---~N~r~FE~~~Gl~~v  181 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFH-REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP---ENQRDFEELNGLSTV  181 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHh-hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh---HHHHHHHHhCCHHHH
Confidence            3456688899998878999999994 579999999999665468899999999998887765   699999999999999


Q ss_pred             HHHhhcc--ccchHHHHHHHHHHhcC
Q 038250          312 LEMLVDA--QRSLCEKALSVLDGLCS  335 (444)
Q Consensus       312 v~lL~~~--~~~~~~~a~~~L~~L~~  335 (444)
                      +.++++.  +.+++-+++..|.-...
T Consensus       182 ~~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  182 CSLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHccccccHHHhHHHHHHHHHHHc
Confidence            9999854  66677777777775544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.047  Score=55.58  Aligned_cols=78  Identities=29%  Similarity=0.379  Sum_probs=68.7

Q ss_pred             CCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           27 GEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      .++..++|++|.-|+...+|+|||.++ .+-+..|+-|..++  -...+.|--|.++..++++||..+++.|..|....+
T Consensus       845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahl--lsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHL--LSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHH--hcCCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence            445778999999999999999999995 78899999999988  455688999999999999999999999999987665


Q ss_pred             c
Q 038250          106 S  106 (444)
Q Consensus       106 ~  106 (444)
                      .
T Consensus       923 ~  923 (929)
T COG5113         923 Q  923 (929)
T ss_pred             c
Confidence            4

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.83  E-value=0.29  Score=45.43  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      ......|+.+|...+=.++..|..+.+..++..|+.+|.. ..+.++..+..+|..+.-.++.|...+ +..+|+..++.
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F-E~~~Gl~~v~~  183 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF-EELNGLSTVCS  183 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH-HHhCCHHHHHH
Confidence            3345667888887777899999999999999999999954 578899999999998888888999988 77899999999


Q ss_pred             HhcCCC-ChHHHHHHHHHHHHHhcC
Q 038250          268 LIKEPI-CPTATKASLVVVYRTITS  291 (444)
Q Consensus       268 ll~~~~-~~~~~~~a~~aL~~L~~~  291 (444)
                      ++++.. +.+++-..+..|+-....
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHcc
Confidence            999762 345656666666644443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=3.4  Score=43.93  Aligned_cols=176  Identities=11%  Similarity=0.087  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      ..++..++...+..+.+.++.+...+++....++-.+.       ...++++|+.+|++.        .++|.-.+..+.
T Consensus       282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs~--------~~vqyvvL~nIa  346 (968)
T KOG1060|consen  282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRSN--------REVQYVVLQNIA  346 (968)
T ss_pred             CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhcC--------CcchhhhHHHHH
Confidence            34566777776665555688899999999999985432       224689999999653        556665555555


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHH-hcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFL-KSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      .+....   +..     .-|.+-.+. .+. ...++..=..+|.+|+  ++.|...|      ++-|-..+++. +.++.
T Consensus       347 ~~s~~~---~~l-----F~P~lKsFfv~ssDp~~vk~lKleiLs~La--~esni~~I------LrE~q~YI~s~-d~~fa  409 (968)
T KOG1060|consen  347 TISIKR---PTL-----FEPHLKSFFVRSSDPTQVKILKLEILSNLA--NESNISEI------LRELQTYIKSS-DRSFA  409 (968)
T ss_pred             HHHhcc---hhh-----hhhhhhceEeecCCHHHHHHHHHHHHHHHh--hhccHHHH------HHHHHHHHhcC-chhHH
Confidence            211111   111     123333322 222 3444455566788884  33343333      45566677766 44566


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  336 (444)
                      ..+..+|...+...        .-+..-++.-|+.+|++.+..++..++.+|..|...
T Consensus       410 a~aV~AiGrCA~~~--------~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  410 AAAVKAIGRCASRI--------GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             HHHHHHHHHHHHhh--------CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            66666666665432        224445888999999999999999999999988763

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.021  Score=54.38  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      +...+....|.||.+-.++.+-++|||..|  |+.-.   +....||+|++.+
T Consensus       299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs---~~l~~CPvCR~rI  346 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS---KHLPQCPVCRQRI  346 (355)
T ss_pred             ccccCCCCceEEecCCccceeeecCCcEEE--chHHH---hhCCCCchhHHHH
Confidence            334444568999999999999999999977  66543   3455699998755

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.65  E-value=0.007  Score=62.63  Aligned_cols=47  Identities=23%  Similarity=0.407  Sum_probs=35.4

Q ss_pred             cccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           37 FRCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      -.||+|..-+.|-...   .|+|-||..||..|-  +..-+||.|+..|...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs--R~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS--RCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhh--hhcccCchhhhhhhee
Confidence            4778888777765433   588888888888887  5556899999887643

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.026  Score=54.02  Aligned_cols=48  Identities=19%  Similarity=0.432  Sum_probs=33.7

Q ss_pred             cccccccccCcCce---ec-CCcchhcHHHHHHHHHhcCC--CCCCCCCcccCCC
Q 038250           37 FRCPISLDLMKDPV---TL-STGITYDRENIEKWIHEDGN--ITCPVTNRVLTSF   85 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv---~~-~cg~~~c~~ci~~~~~~~~~--~~CP~c~~~~~~~   85 (444)
                      -.|.||.+.+-.--   .+ .|||+|.-.|+.+|| +...  ..||.|+-.+..+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwf-e~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWF-EGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHH-ccCCccCCCCceeecccce
Confidence            47999966554322   12 599999999999999 4332  5899998444433

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=4.7  Score=42.34  Aligned_cols=216  Identities=11%  Similarity=0.072  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhc
Q 038250          192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIK  270 (444)
Q Consensus       192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~  270 (444)
                      +..|+..|+ +...+++.   +--.+....++++|...+..+...+...+-.|+...+ +++-.+...-+-+..++....
T Consensus       166 qkaALclL~-L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~  241 (938)
T KOG1077|consen  166 QKAALCLLR-LFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG  241 (938)
T ss_pred             HHHHHHHHH-HHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Confidence            456666666 66665542   2335778999999998888888888888888876554 455555222222222222211


Q ss_pred             CC---------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--ccch-----HHHHHHHHHHhc
Q 038250          271 EP---------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QRSL-----CEKALSVLDGLC  334 (444)
Q Consensus       271 ~~---------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~-----~~~a~~~L~~L~  334 (444)
                      .+         ..|=..-..+++|.+.=.-++  ...+.+..+  ++..++....+.  ...+     +...+--.-+|+
T Consensus       242 t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D--~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~  317 (938)
T KOG1077|consen  242 TSLQDYTYYFVPAPWLQVKLLRLLQIYPTPED--PSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA  317 (938)
T ss_pred             cchhhceeecCCChHHHHHHHHHHHhCCCCCC--chHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence            11         124455556666666633332  223444333  344444444421  1122     222222222333


Q ss_pred             CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHH
Q 038250          335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEH  414 (444)
Q Consensus       335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~  414 (444)
                      .+-+.-..++.  .++..|-+++.......+.-|+..+..|+...      ...++++.. ...++..|....+..+|++
T Consensus       318 ~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------~s~davK~h-~d~Ii~sLkterDvSirrr  388 (938)
T KOG1077|consen  318 IHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSE------FSIDAVKKH-QDTIINSLKTERDVSIRRR  388 (938)
T ss_pred             HHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhcc------chHHHHHHH-HHHHHHHhccccchHHHHH
Confidence            33332222212  35667777776666777888888888888753      233444333 6777788886667888888


Q ss_pred             HHHHHHHHHh
Q 038250          415 VSELLKLLNP  424 (444)
Q Consensus       415 a~~ll~~l~~  424 (444)
                      |+.||=.+..
T Consensus       389 avDLLY~mcD  398 (938)
T KOG1077|consen  389 AVDLLYAMCD  398 (938)
T ss_pred             HHHHHHHHhc
Confidence            8887766653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.41  E-value=0.13  Score=41.64  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             hhhhhccc--CCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          208 EGLTYLGS--ASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       208 ~~~~~i~~--~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      +|-..+.+  ...+..|+.+|. +.++.+..-||.=|+.++...|..+..+ ...|+-..+..++.++ +++++..|+.+
T Consensus        32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii-~~lg~K~~vM~Lm~h~-d~eVr~eAL~a  109 (119)
T PF11698_consen   32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNII-EKLGAKERVMELMNHE-DPEVRYEALLA  109 (119)
T ss_dssp             HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHH-HHHSHHHHHHHHTS-S-SHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHH-HhcChHHHHHHHhcCC-CHHHHHHHHHH
Confidence            34445543  346899999994 4477777888999999988889999888 7789999999999998 89999999999


Q ss_pred             HHHHhcC
Q 038250          285 VYRTITS  291 (444)
Q Consensus       285 L~~L~~~  291 (444)
                      +..+-.+
T Consensus       110 vQklm~~  116 (119)
T PF11698_consen  110 VQKLMVN  116 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8876543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.40  E-value=3.9  Score=39.48  Aligned_cols=189  Identities=13%  Similarity=0.084  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc---CchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN---GAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      +...+..+...    ....+..|+..|..+.....  ....+..   -.+..+.+.++   .+.    .+-+..|+.++.
T Consensus        45 L~~~Id~l~eK----~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lk---kg~----~~E~~lA~~~l~  111 (309)
T PF05004_consen   45 LKEAIDLLTEK----SSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLK---KGK----SEEQALAARALA  111 (309)
T ss_pred             HHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhc---cCC----HHHHHHHHHHHH
Confidence            33445555443    46788999999998876533  3333332   23344444443   231    233445555544


Q ss_pred             hhcCCC----hhhhhhcccCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHH---hcchhhHHHhhcccccHHHH--HHHh
Q 038250          201 LLFPLA----GEGLTYLGSASSMRCMVWFLKSGD--LSRRRNAVLVLREIV---SSDHRKVNVLLDIEGAIEPL--FKLI  269 (444)
Q Consensus       201 ~~l~~~----~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~L~---s~~~~~~~~i~~~~g~i~~L--v~ll  269 (444)
                       +++..    ++.. .+. ....|.|...+..++  ...|..++.+|.-++   ..+++.....   -..+..+  ...+
T Consensus       112 -Ll~ltlg~g~~~~-ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~---~~~le~if~~~~~  185 (309)
T PF05004_consen  112 -LLALTLGAGEDSE-EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL---MESLESIFLLSIL  185 (309)
T ss_pred             -HHhhhcCCCccHH-HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH---HHHHHHHHHHHhc
Confidence             33322    2222 222 356788888887664  455555554555442   2222222211   0223322  1222


Q ss_pred             cCC---------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250          270 KEP---------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       270 ~~~---------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  334 (444)
                      +.+         .++.+..+|+.+-.-|.+.-+  +....... ...++.|+.+|.+.+..++..|-.+|+.|-
T Consensus       186 ~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~--~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  186 KSDGNAPVVAAEDDAALVAAALSAWALLLTTLP--DSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CcCCCcccccCCCccHHHHHHHHHHHHHHhcCC--HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            221         124577777776666665543  10122222 347999999999999999988877777664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.27  E-value=3.3  Score=41.11  Aligned_cols=111  Identities=13%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHH-hhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFE-TFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS  218 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~  218 (444)
                      +..-..|+..+..+..+.|..-..+.++|.++.+++.+. ..-.    .+.++....-.++. .++.+....+.+.+.+.
T Consensus       123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~----~s~e~l~~lP~~l~-AicLN~~Gl~~~~~~~~  197 (379)
T PF06025_consen  123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL----PSSEVLTSLPNVLS-AICLNNRGLEKVKSSNP  197 (379)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC----CcHHHHHHHHHHHh-HHhcCHHHHHHHHhcCh
Confidence            457788899999999999988889999999999999885 2211    24667766666777 67778999999999999


Q ss_pred             HHHHHHHHhcCC-HH-HHH-HHH----HHHHHHHhcchhhHHHh
Q 038250          219 MRCMVWFLKSGD-LS-RRR-NAV----LVLREIVSSDHRKVNVL  255 (444)
Q Consensus       219 i~~Lv~lL~~~~-~~-~~~-~A~----~~L~~L~s~~~~~~~~i  255 (444)
                      ++.+++++.+.. .. .+. ..+    ..+-.|..+.+..|..+
T Consensus       198 l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i  241 (379)
T PF06025_consen  198 LDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI  241 (379)
T ss_pred             HHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence            999999887642 11 111 122    23444555566666655

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.23  E-value=0.024  Score=54.32  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             ccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        38 ~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .|-||-+-=+|=.+-+|||-.|-.|+..|-.+.+..+||.||..+...
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            799999988887666999999999999998444467899999777643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.20  E-value=0.052  Score=44.12  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=41.3

Q ss_pred             CccccccccccCcCceec----CCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCC
Q 038250           35 NHFRCPISLDLMKDPVTL----STGITYDRENIEKWIHE-DGNITCPVTNRVLTSF   85 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~----~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~   85 (444)
                      .-+.|.||++...|..-+    .||.+.|..|--..|+- .-...||+|+..+...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            457899999999988776    59999999999997742 3457899999877543

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.13  E-value=0.02  Score=60.70  Aligned_cols=47  Identities=26%  Similarity=0.440  Sum_probs=39.3

Q ss_pred             cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      +.|++|.+ ...++.+.|||.||..|+...+.......||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            79999999 888999999999999999998843344579999866543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.031  Score=53.30  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=39.7

Q ss_pred             ccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           36 HFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      .-.|-||+.--+|=++++|-|. .|..|.+...  -....||.||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence            4689999999999999999996 8999988754  445579999998753

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.05  E-value=0.27  Score=38.52  Aligned_cols=68  Identities=21%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH--hhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          348 LIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL--QVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       348 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      -.+++++..+...+.+++..|+.+|.+++...       ..+++  =..++..|.+++... ++.+|..|.-+-++++
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-------~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA-------RGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhc
Confidence            45788888887788999999999999999852       22222  367778888888766 8888888877777764

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.00  E-value=0.12  Score=41.86  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250          261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  334 (444)
                      ++..|+++|..+.++.....|+.=|..++.+.+   ..+..+-+.|+=..++++|.+++++++..|+.++..|-
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p---~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP---NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G---GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHCh---hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            678899999665578888889999999998876   34555556899999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.86  E-value=5.8  Score=39.86  Aligned_cols=150  Identities=18%  Similarity=0.208  Sum_probs=103.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcCCC----Ch--HHHHHHHHHHHHHhcCC
Q 038250          222 MVWFLKSGDLSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKEPI----CP--TATKASLVVVYRTITSA  292 (444)
Q Consensus       222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~~~----~~--~~~~~a~~aL~~L~~~~  292 (444)
                      +..++...+++-|-.|......+...++   .+|..+-+ .=+.+.+-++|.+..    .|  -.+..+...|...|+..
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            5566666678888888888888865544   45655633 456788888887541    22  35667777788888876


Q ss_pred             CCCCchhHHHHhcCcHHHHHHHhhcc-ccc------hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhH
Q 038250          293 SATEKPIQKFVDMGLVSLLLEMLVDA-QRS------LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLA  364 (444)
Q Consensus       293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~------~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~  364 (444)
                      +  =.....|++  .||.|++++..+ +++      +.+.+-..|..++..+.+...+ ...|+++.+-++-... ....
T Consensus        95 E--lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~L-ia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   95 E--LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTL-IASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             h--hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHH-HhcCchHHHHHHHhCCCCchh
Confidence            5  223455665  699999999743 444      7899999999999999999998 7889999998744322 2223


Q ss_pred             HHHHHHHHHHHcc
Q 038250          365 TEFAVSILWKLCK  377 (444)
Q Consensus       365 ~~~a~~~L~~L~~  377 (444)
                      .+.|+.++.-+..
T Consensus       170 ~alal~Vlll~~~  182 (698)
T KOG2611|consen  170 MALALKVLLLLVS  182 (698)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555544443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.80  E-value=0.11  Score=31.21  Aligned_cols=30  Identities=17%  Similarity=0.321  Sum_probs=26.0

Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250          261 AIEPLFKLIKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      ++|.++++++++ +++++..|+.+|..++.+
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence            479999999998 899999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.75  E-value=0.33  Score=35.75  Aligned_cols=67  Identities=18%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250          277 ATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAYNNSL  348 (444)
Q Consensus       277 ~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  348 (444)
                      -++.|+|++.++++.+.    ....+-+.++|+.++++... +.-.++--|..+|..++...++.+.+ .+.|
T Consensus         3 ~lKaaLWaighIgss~~----G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L-~~~g   70 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPL----GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL-DELG   70 (73)
T ss_pred             HHHHHHHHHHhHhcChH----HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH-HHcC
Confidence            36789999999999875    56666678999999999974 46789999999999999988888776 4433

>PRK14707 hypothetical protein; Provisional

Probab=93.61  E-value=16  Score=43.50  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      +...+..++..|+.=   -+...+..|+..|..-..++++-++.+--.| |..+++-|..|-      +..+...++..|
T Consensus       371 ~~q~~a~~lNalsKW---p~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWP------d~~~C~~aa~~l  440 (2710)
T PRK14707        371 EPQGVSSVLNALSKW---PDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWP------DLPICGQAVSAL  440 (2710)
T ss_pred             chhHHHHHHhhhhcC---CCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCC------cchhHHHHHHHH
Confidence            344566666666654   2677899999999887777777777776666 577778887662      456778888888


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKS--GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA  277 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~  277 (444)
                      ..-+..+.+-+..+---+ |...+.-|+.  +++.+.+.|-.....| ..+.+.++.+ .-.++.-.|-.+-+-+..+..
T Consensus       441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l-~~~~~l~~a~-~~q~~~~~L~aLSK~Pd~~~c  517 (2710)
T PRK14707        441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARL-AHERRLRKAL-KPQEVVIALHSLSKWPDTPIC  517 (2710)
T ss_pred             HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHh-cccHHHHhhc-CHHHHHHHHHHhhcCCCcHHH
Confidence            877777777766554223 4445555544  3566666666666677 6778888888 555666666665555544666


Q ss_pred             HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250          278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK  356 (444)
Q Consensus       278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l  356 (444)
                      .+.+.+.-..+.....    .... ...--+..++.-|+ .++....+.++..|..+..+......- .++-.|..+++.
T Consensus       518 ~~A~~~lA~rl~~~~~----l~~~-~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNa  591 (2710)
T PRK14707        518 AEAASALAERVVDELQ----LRKA-FDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNA  591 (2710)
T ss_pred             HHHHHHHHHHhccchh----hhhh-hhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHh
Confidence            6767776666765443    2333 23223444555554 445556666666666654433333333 456677777777


Q ss_pred             Hhh
Q 038250          357 ILR  359 (444)
Q Consensus       357 l~~  359 (444)
                      |.+
T Consensus       592 LSK  594 (2710)
T PRK14707        592 LSK  594 (2710)
T ss_pred             hcc
Confidence            765

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.33  E-value=0.043  Score=58.23  Aligned_cols=48  Identities=19%  Similarity=0.469  Sum_probs=37.7

Q ss_pred             ccccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .-.|+||=.++.     -|-..  .|.|-|.-.|+.+|++..+..+||.||..+.
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            347999988876     23322  4889999999999997788899999997653

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=0.05  Score=51.40  Aligned_cols=48  Identities=13%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .|+-.||||----...|..+|+|.-|+.||.+++  -..+.|=.|+..+.
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl--mN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL--MNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHH--hcCCeeeEecceee
Confidence            4667999998887888888999999999999998  45566777765443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.30  E-value=0.5  Score=40.70  Aligned_cols=148  Identities=18%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch
Q 038250          170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH  249 (444)
Q Consensus       170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~  249 (444)
                      +..++..|... .    ...+++-.|+-++..++   +..+.... .-.-+.+-.++..++.+....+..+|..|--..+
T Consensus         5 l~~lL~~L~~~-~----~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~   75 (157)
T PF11701_consen    5 LDTLLTSLDML-R----QPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPP   75 (157)
T ss_dssp             CCHHHHHHHCT-T----TSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred             HHHHHHHhccc-C----CCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence            45566666421 0    13567777777777553   33333221 1112333334444455567778888888855667


Q ss_pred             hhHHHhhcccccHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccc-hHHH
Q 038250          250 RKVNVLLDIEGAIEPLFKLIK--EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRS-LCEK  325 (444)
Q Consensus       250 ~~~~~i~~~~g~i~~Lv~ll~--~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~-~~~~  325 (444)
                      +....+-...|+++.++.++.  .. +......++.+|..-|.+.     .+..++...+++.|-+++.. .+.. ++..
T Consensus        76 dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~-----~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~  149 (157)
T PF11701_consen   76 DVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDK-----SCRTFISKNYVSWLKELYKNSKDDSEIRVL  149 (157)
T ss_dssp             HHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSH-----HHHHCCHHHCHHHHHHHTTTCC-HH-CHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHHHHccccchHHHHHH
Confidence            766666577899999999998  44 6788888888888877765     57777777789999999964 4444 7777


Q ss_pred             HHHHHHH
Q 038250          326 ALSVLDG  332 (444)
Q Consensus       326 a~~~L~~  332 (444)
                      |+-.|..
T Consensus       150 A~v~L~K  156 (157)
T PF11701_consen  150 AAVGLCK  156 (157)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7766653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=12  Score=41.29  Aligned_cols=221  Identities=12%  Similarity=0.055  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.+++.|.+.++..|..++..|++.+..++...|  +. +++ .+|...++++. +.+     +...-..|+-+|. 
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-Lad-~vi~svid~~~-p~e-----~~~aWHgacLaLA-  405 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LAD-QVIGSVIDLFN-PAE-----DDSAWHGACLALA-  405 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HHH-HHHHHHHHhcC-cCC-----chhHHHHHHHHHH-
Confidence            4466777788777777788999999999999998877  22 222 24455555552 111     2334445555555 


Q ss_pred             hcCCChhhhhhccc----CCcHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhcch--hhHHHhhcccccHHHHHH
Q 038250          202 LFPLAGEGLTYLGS----ASSMRCMVWFLKS--------GDLSRRRNAVLVLREIVSSDH--RKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       202 ~l~~~~~~~~~i~~----~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~L~s~~~--~~~~~i~~~~g~i~~Lv~  267 (444)
                      .++.     .-+.-    ..++|.++.-|.-        ....+|..|+-+++.++....  +.+..+   ......|+.
T Consensus       406 ELA~-----rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l---~~L~s~LL~  477 (1133)
T KOG1943|consen  406 ELAL-----RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL---QSLASALLI  477 (1133)
T ss_pred             HHHh-----cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH---HHHHHHHHH
Confidence            2221     11111    2445556555532        235688889999998853322  122222   123344432


Q ss_pred             -HhcCCCChHHHHHHHHHHHHHhcCCCCC----------------------CchhHHHHh-cCcHHHHHHHhh-----cc
Q 038250          268 -LIKEPICPTATKASLVVVYRTITSASAT----------------------EKPIQKFVD-MGLVSLLLEMLV-----DA  318 (444)
Q Consensus       268 -ll~~~~~~~~~~~a~~aL~~L~~~~~~~----------------------~~~~~~i~~-~g~v~~Lv~lL~-----~~  318 (444)
                       .+-+. +.-.+++|.+|+........|.                      ...+..+.+ .|...++++-|-     +-
T Consensus       478 ~AlFDr-evncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW  556 (1133)
T KOG1943|consen  478 VALFDR-EVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW  556 (1133)
T ss_pred             HHhcCc-hhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc
Confidence             34444 5778999999998765443321                      012233333 466667776654     34


Q ss_pred             ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          319 QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       319 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      +..+++.++.+|..|+..   ..+. ...+.++++++...+.+...+.
T Consensus       557 d~~irelaa~aL~~Ls~~---~pk~-~a~~~L~~lld~~ls~~~~~r~  600 (1133)
T KOG1943|consen  557 DVKIRELAAYALHKLSLT---EPKY-LADYVLPPLLDSTLSKDASMRH  600 (1133)
T ss_pred             cHHHHHHHHHHHHHHHHh---hHHh-hcccchhhhhhhhcCCChHHhh
Confidence            899999999999998752   2333 3457788888877666554443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.18  E-value=0.68  Score=50.96  Aligned_cols=143  Identities=17%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcc
Q 038250          170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSD  248 (444)
Q Consensus       170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~  248 (444)
                      .|.++...+.++.   ..++++|..|.-+|...+..+.+...     ..+|.|...|. +.++.+|.+++.+++.|+-..
T Consensus       921 ~piv~e~c~n~~~---~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  921 APIVVEGCRNPGL---FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHhcCCCc---CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            3444455533222   23799999999999988877766543     45899999997 678999999999999997666


Q ss_pred             hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHH
Q 038250          249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALS  328 (444)
Q Consensus       249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~  328 (444)
                      +...+..      -+.|...|.+. ++.+++.|..+|.+|-..+-        |---|-++-...+|.++++.+..-|=.
T Consensus       993 pnlie~~------T~~Ly~rL~D~-~~~vRkta~lvlshLILndm--------iKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen  993 PNLIEPW------TEHLYRRLRDE-SPSVRKTALLVLSHLILNDM--------IKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred             ccccchh------hHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh--------hHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence            6554444      36788888888 89999999999999987652        223688999999999999999888875


Q ss_pred             HHHHhcC
Q 038250          329 VLDGLCS  335 (444)
Q Consensus       329 ~L~~L~~  335 (444)
                      ....|+.
T Consensus      1058 FF~Els~ 1064 (1251)
T KOG0414|consen 1058 FFKELSS 1064 (1251)
T ss_pred             HHHHhhh
Confidence            5555544

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.17  E-value=2.1  Score=41.72  Aligned_cols=186  Identities=10%  Similarity=0.122  Sum_probs=127.5

Q ss_pred             ChhHHHHHHHHHHHHhccCcccch-----hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKR-----CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYL  213 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~-----~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i  213 (444)
                      +-+.+..+......+.+.....+.     .+... .-..|..++.-+.      ++++.-.+-..|+ .+..++.--..+
T Consensus        89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~------~~dial~~g~mlR-ec~k~e~l~~~i  160 (335)
T PF08569_consen   89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYE------NPDIALNCGDMLR-ECIKHESLAKII  160 (335)
T ss_dssp             -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGG------STTTHHHHHHHHH-HHTTSHHHHHHH
T ss_pred             CCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhc------CccccchHHHHHH-HHHhhHHHHHHH
Confidence            777788888888887776655543     22222 1233444443221      4667777778888 666777666666


Q ss_pred             ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250          214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      .....+..+......++=++...|..++..|...+... .+.+.. -..++.....+|.++ +.-.++.++..|..|-.+
T Consensus       161 L~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ellld  239 (335)
T PF08569_consen  161 LYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLLD  239 (335)
T ss_dssp             HTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHHS
T ss_pred             hCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHHc
Confidence            67788888999999999999999999999976666643 333311 123666777888888 888999999999999988


Q ss_pred             CCCCCchhHH----HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          292 ASATEKPIQK----FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       292 ~~~~~~~~~~----i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                      ..    |-..    +.+..-+..++.+|++.+..++-.|..+....+..+
T Consensus       240 r~----n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  240 RS----NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             GG----GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             hh----HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            76    5443    334567899999999999999999999988766544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.10  E-value=0.048  Score=37.21  Aligned_cols=47  Identities=11%  Similarity=0.060  Sum_probs=36.6

Q ss_pred             ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250           36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE   86 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~   86 (444)
                      +..|-.|...-...+.++|||..|+.|..-    ..-..||.|+.++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~----~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG----ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccCh----hhccCCCCCCCcccCCC
Confidence            456778888888899999999999999553    23346999999886543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=92.99  E-value=1.4  Score=45.59  Aligned_cols=124  Identities=14%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250          228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL  307 (444)
Q Consensus       228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~  307 (444)
                      .++...+..|+..|...-...++..+      .+|..+++|.++. +..++..|...|-.+|.++.   ++...     +
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~---~~v~k-----v   97 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP---EHVSK-----V   97 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-----T-HHH-----H
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH---HHHhH-----H
Confidence            46789999999999998777777554      4578999999988 89999999999999999853   35555     4


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh---hcChhHHHHHHHHHHH
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL---RVSDLATEFAVSILWK  374 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~~  374 (444)
                      ++.|+++|...++.....+-.+|..|-. .+.+.       .+..|..-+.   ++++.+++.++..|..
T Consensus        98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~-~d~k~-------tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   98 ADVLVQLLQTDDPVELDAVKNSLMSLLK-QDPKG-------TLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHH-H-HHH-------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHh-cCcHH-------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            6689999987765444444444444433 11222       2233444443   4566778888877743

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=0.095  Score=50.30  Aligned_cols=63  Identities=19%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             cccccccccCcC------ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC--C---CCCCccHHHHHHHHHH
Q 038250           37 FRCPISLDLMKD------PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT--S---FEPIPNHTIRRMIQDW  100 (444)
Q Consensus        37 ~~Cpic~~~~~~------Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~--~---~~l~~n~~l~~~i~~~  100 (444)
                      +.|-||.+-|..      |-.+.|||++|..|+...+ ..+...||.||.+..  .   ..+..|..+...++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~-~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL-GNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHh-cCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            578888888763      7777899999999999988 556678999998842  2   2467777777777665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.97  E-value=0.24  Score=29.70  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      +|.+++++++.++++|..|+.+|..++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            789999999999999999999999995

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.92  E-value=5  Score=44.71  Aligned_cols=270  Identities=13%  Similarity=0.103  Sum_probs=150.0

Q ss_pred             HHHHHHhhccc-CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250          127 INCNITTACKS-EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL  205 (444)
Q Consensus       127 ll~~L~~~~~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~  205 (444)
                      +++.+.+.++. ...+.+.+|+..|+.++..-..   ...---++|-++.++.   ++    .++||..|+.+|..+++.
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~---Ds----~a~Vra~Al~Tlt~~L~~  492 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLM---DS----EADVRATALETLTELLAL  492 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhc---Cc----hHHHHHHHHHHHHHHHhh
Confidence            34444443321 2456788999999998864321   1222247899999994   33    588999999988866654


Q ss_pred             Ch----hhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc------------------chhh-----------
Q 038250          206 AG----EGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSS------------------DHRK-----------  251 (444)
Q Consensus       206 ~~----~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~------------------~~~~-----------  251 (444)
                      =.    .+-..+ -.=.+|.|-.++.+. ...++..-|..|..||..                  ++++           
T Consensus       493 Vr~~~~~daniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~  571 (1431)
T KOG1240|consen  493 VRDIPPSDANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE  571 (1431)
T ss_pred             ccCCCcccchhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence            22    222222 234577787777663 334444434444444210                  0000           


Q ss_pred             HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHH
Q 038250          252 VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLD  331 (444)
Q Consensus       252 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  331 (444)
                      ...+ . .++=...+.+|.++ .+-+++.-+..|.-||..-.     +.. .+-=.++.|+..|.+.|..++-.-...|.
T Consensus       572 ~~~L-~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-----k~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  572 LQAL-H-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-----KEK-SNDVILSHLITFLNDKDWRLRGAFFDSIV  642 (1431)
T ss_pred             HHHH-H-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-----hcc-cccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence            1111 0 01112222334444 45566666666666664421     111 11125677777787777777766666666


Q ss_pred             HhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHH
Q 038250          332 GLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKT  411 (444)
Q Consensus       332 ~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~  411 (444)
                      .++..-.-|  - ++++.+|.|..-|....+-+...|++.|..|+..      ...+...--..+.....+|... +.=+
T Consensus       643 gvsi~VG~r--s-~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------~ll~K~~v~~i~~~v~PlL~hP-N~WI  712 (1431)
T KOG1240|consen  643 GVSIFVGWR--S-VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------GLLRKPAVKDILQDVLPLLCHP-NLWI  712 (1431)
T ss_pred             ceEEEEeee--e-HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------cccchHHHHHHHHhhhhheeCc-hHHH
Confidence            555321111  1 2456778887777777788888999999888874      1233322233445555566665 7778


Q ss_pred             HHHHHHHHHHHHhhc
Q 038250          412 KEHVSELLKLLNPHR  426 (444)
Q Consensus       412 k~~a~~ll~~l~~~~  426 (444)
                      |..+..++-...+.+
T Consensus       713 R~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  713 RRAVLGIIAAIARQL  727 (1431)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            888887666665544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.91  E-value=1.5  Score=37.72  Aligned_cols=144  Identities=11%  Similarity=0.104  Sum_probs=93.9

Q ss_pred             HHHHHHhcC-CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhH
Q 038250          263 EPLFKLIKE-PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGR  340 (444)
Q Consensus       263 ~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~  340 (444)
                      ..++.-|.. ...+.++..++-++..+-  +.    .+..+.+ -.-+.+-.++..++.+-...++.+|..|-- .++--
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~----~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DA----AREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HH----HHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH--HH----hHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            344444443 324567777777777763  21    3444333 233344444455555567778888887754 56666


Q ss_pred             HHHhcCCCChHHHHHHHh--hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH-HHHHHHH
Q 038250          341 GDAYNNSLIFPVIVKKIL--RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK-TKEHVSE  417 (444)
Q Consensus       341 ~~i~~~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~-~k~~a~~  417 (444)
                      ..++...|..+.++.++.  +.+...+..++.+|..=|.      .+..+..+...+++-|-+++..+.++. +|-.|+-
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence            777788999999999888  5677888888888877666      556666666777899999996664566 6766665


Q ss_pred             HH
Q 038250          418 LL  419 (444)
Q Consensus       418 ll  419 (444)
                      .|
T Consensus       153 ~L  154 (157)
T PF11701_consen  153 GL  154 (157)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.89  E-value=6.1  Score=34.66  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH-HHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI-EPLF  266 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i-~~Lv  266 (444)
                      |+.++..++.+++.++...+..-     ...++.+...|+++++.+|..|+.+|.+|... +    .+ ...|-+ ..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d----~i-k~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D----MI-KVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C----ce-eehhhhhHHHH
Confidence            36678888888885444443222     34588999999999999999999999999532 2    22 223444 7788


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHhcC
Q 038250          267 KLIKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       267 ~ll~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      .++.++ +++++..|...+..+...
T Consensus        70 ~~l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHHHh
Confidence            888777 899999999999999876

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.55  E-value=8.8  Score=38.72  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=83.1

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-------------hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-------------KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-------------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      .+..|+.+|.+  +++...|+..+.-|.+..++             +|+.+ - .-.+|.|++-.+.. +.+.+.+-+.+
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~-F-~~~~p~L~~~~~~~-~~~~k~~yL~A  346 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF-F-TQVLPKLLEGFKEA-DDEIKSNYLTA  346 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH-H-HHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence            36677777755  67788999999999655342             35555 2 46788998888877 45588888999


Q ss_pred             HHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          285 VYRTITSASATEKPIQKFVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                      |.++..+-+    ....+-+ ...+|.|++-|..++..++..++.+|..+....
T Consensus       347 Ls~ll~~vP----~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  347 LSHLLKNVP----KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHhhCC----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            999998764    2222223 458899999998888899999999999988644

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=92.38  E-value=2.8  Score=45.40  Aligned_cols=136  Identities=21%  Similarity=0.191  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh
Q 038250          190 SVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI  269 (444)
Q Consensus       190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll  269 (444)
                      .++..++.++...++....--.- .+.+.+..++.-|.+....++..|+.+|++|++..  ++...   .++|..|++=|
T Consensus       148 ai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~--~~~ly---~~li~~Ll~~L  221 (1233)
T KOG1824|consen  148 AIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC--NRDLY---VELIEHLLKGL  221 (1233)
T ss_pred             hhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc--CHHHH---HHHHHHHHhcc
Confidence            35666666666333222111111 23566677777777788899999999999996543  33333   36778888888


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh---hccccchHHHHHHHHHHhcC
Q 038250          270 KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML---VDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       270 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~~~~~a~~~L~~L~~  335 (444)
                      .....+...+.-..+|..++....    .+.----...+|.+.+..   ...+.+++|.++.+|..+..
T Consensus       222 ~~~~q~~~~rt~Iq~l~~i~r~ag----~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  222 SNRTQMSATRTYIQCLAAICRQAG----HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhc----chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            777667788888888888887643    222212235788888888   56688899999999987764

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.28  E-value=0.082  Score=53.90  Aligned_cols=59  Identities=29%  Similarity=0.352  Sum_probs=39.4

Q ss_pred             CCccccccccccCc----CceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc-----CCCCCCccHHHHHHH
Q 038250           34 PNHFRCPISLDLMK----DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL-----TSFEPIPNHTIRRMI   97 (444)
Q Consensus        34 ~~~~~Cpic~~~~~----~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~-----~~~~l~~n~~l~~~i   97 (444)
                      .+.+.|+||...|.    .||.+-||||.|+.|.+...    +.+|| |...-     +......|+++-+.+
T Consensus         9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly----n~scp-~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen    9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY----NASCP-TKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh----hccCC-CCccccchhcChhhcchhHHHHHhh
Confidence            34579999977664    79999999999999999755    33577 32211     122344556655554

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=92.18  E-value=0.14  Score=45.83  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=44.9

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCC--CCcccCCCCCCccHHHHHH
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPV--TNRVLTSFEPIPNHTIRRM   96 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~--c~~~~~~~~l~~n~~l~~~   96 (444)
                      .+|||+.+...-|+.- .|+|.|.+.-|.++++-.-...||.  |.+....+.+..++.+...
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R  252 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKR  252 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHH
Confidence            6999999999999875 7999999999999992223467887  7666655555555554443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.04  E-value=15  Score=37.10  Aligned_cols=129  Identities=14%  Similarity=0.147  Sum_probs=87.7

Q ss_pred             ChhHHHHHHHHHHHHhccCc---ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh--hhc
Q 038250          139 DQAGCRDLVAKIKKWTKESD---RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL--TYL  213 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~--~~i  213 (444)
                      +.+++..|+--..++++.++   .+|+.+.++=|.+.+=++|.+.+.+....+.-.+.-++++|. ..+..++--  ..+
T Consensus        24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa-cFC~~pElAsh~~~  102 (698)
T KOG2611|consen   24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA-CFCRVPELASHEEM  102 (698)
T ss_pred             ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH-HHhCChhhccCHHH
Confidence            44688999999999998765   568889999888999999975422111223334455666666 444444421  122


Q ss_pred             ccCCcHHHHHHHHhcC-CHH------HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250          214 GSASSMRCMVWFLKSG-DLS------RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP  272 (444)
Q Consensus       214 ~~~g~i~~Lv~lL~~~-~~~------~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~  272 (444)
                      +  +.||.|..++..+ +++      ..+.+-..|..+++.....+..|  ..|+++.+.++-.-+
T Consensus       103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li--a~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen  103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI--ASGGLRVIAQMYELP  164 (698)
T ss_pred             H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH--hcCchHHHHHHHhCC
Confidence            2  6799999999765 332      66788899999965544555555  469999999887654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.99  E-value=17  Score=37.58  Aligned_cols=156  Identities=10%  Similarity=0.039  Sum_probs=97.1

Q ss_pred             cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh-hhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL-TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      ++++|-|+++|....++....+=.+-..|.++|. +.   .+++ ..|++. ++..+-+-+++++..-++.|+.+++.+.
T Consensus       320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq-lf---aq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm  394 (858)
T COG5215         320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ-LF---AQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHHhcCCCccccccchhhhHHHHHH-HH---HHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence            4689999999975221110112223444555554 21   2222 233322 3333334456778889999999999996


Q ss_pred             hcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---ccccc
Q 038250          246 SSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---DAQRS  321 (444)
Q Consensus       246 s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~  321 (444)
                      .+.. .....+ . +.++|.+..++.++ ..-++..++|+++.++.+-      ...+--.|-++..+....   .+.+.
T Consensus       395 ~gp~~~~lT~~-V-~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~v------a~~i~p~~Hl~~~vsa~liGl~D~p~  465 (858)
T COG5215         395 HGPCEDCLTKI-V-PQALPGIENEMSDS-CLWVKSTTAWCFGAIADHV------AMIISPCGHLVLEVSASLIGLMDCPF  465 (858)
T ss_pred             cCccHHHHHhh-H-HhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHH------HHhcCccccccHHHHHHHhhhhccch
Confidence            4432 344455 3 68999999999877 6789999999999998652      233333555555554443   23667


Q ss_pred             hHHHHHHHHHHhcCC
Q 038250          322 LCEKALSVLDGLCSS  336 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~  336 (444)
                      +..++.|...+|+.+
T Consensus       466 ~~~ncsw~~~nlv~h  480 (858)
T COG5215         466 RSINCSWRKENLVDH  480 (858)
T ss_pred             HHhhhHHHHHhHHHh
Confidence            778888888888764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.96  E-value=0.12  Score=39.83  Aligned_cols=27  Identities=19%  Similarity=0.550  Sum_probs=23.2

Q ss_pred             CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250           53 STGITYDRENIEKWIHEDGNITCPVTNRV   81 (444)
Q Consensus        53 ~cg~~~c~~ci~~~~~~~~~~~CP~c~~~   81 (444)
                      .|.|.|...||.+|+  +....||.|.+.
T Consensus        80 ~CNHaFH~hCisrWl--ktr~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWL--KTRNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHH--hhcCcCCCcCcc
Confidence            699999999999999  556689999754

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.83  E-value=0.067  Score=55.70  Aligned_cols=66  Identities=15%  Similarity=0.330  Sum_probs=47.3

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCCCCCccHHHHHHHHH
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVTNRVLTSFEPIPNHTIRRMIQD   99 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~   99 (444)
                      ..++.||||...+.+|+.+.|-|.||+.|+...|.. .+...||+|+.........-...-.+++++
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe   85 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE   85 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence            446799999999999999999999999999986522 335789999866554433323333444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.67  E-value=0.085  Score=50.61  Aligned_cols=45  Identities=11%  Similarity=0.330  Sum_probs=36.6

Q ss_pred             ccccccccccCcC-c---eecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250           36 HFRCPISLDLMKD-P---VTLSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus        36 ~~~Cpic~~~~~~-P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      .+.|..|++.+-- |   --++|.|.|.-.|.+.++-.++..+||.|++
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4799999998652 2   2359999999999999995567789999984

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.54  E-value=11  Score=40.11  Aligned_cols=265  Identities=14%  Similarity=0.107  Sum_probs=134.3

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL  205 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~  205 (444)
                      .+..++.+-+++.+.-+..+|+.++..+...++  |...-.-+.   |--++++.       ...++-.|+++|......
T Consensus       245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~pavs~---Lq~flssp-------~~~lRfaAvRtLnkvAm~  312 (865)
T KOG1078|consen  245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAPAVSV---LQLFLSSP-------KVALRFAAVRTLNKVAMK  312 (865)
T ss_pred             hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcchHHHH---HHHHhcCc-------HHHHHHHHHHHHHHHHHh
Confidence            455666665555577788999999998876543  222223344   44456433       466788888888744433


Q ss_pred             Chh-----hh---hhccc---CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhh------------ccccc
Q 038250          206 AGE-----GL---TYLGS---ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLL------------DIEGA  261 (444)
Q Consensus       206 ~~~-----~~---~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~------------~~~g~  261 (444)
                      ++.     |+   ..|.+   .-+-..+..+|+.|+......-..-+.+..+. +++.+..+.            ...+.
T Consensus       313 ~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~  392 (865)
T KOG1078|consen  313 HPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM  392 (865)
T ss_pred             CCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence            331     11   12221   12334555566666544443333333333211 222222220            11234


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHH
Q 038250          262 IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG  341 (444)
Q Consensus       262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  341 (444)
                      +..|..+|++....+.+++...++..+.....   ..+..     ++..|...+.+.  +...-+..+|..|-...  -.
T Consensus       393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~p---dsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg--P~  460 (865)
T KOG1078|consen  393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENP---DSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG--PK  460 (865)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHhCc---chhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC--CC
Confidence            45555566554445666666666666555332   12222     445555555433  22344555555543210  00


Q ss_pred             HHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250          342 DAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL  421 (444)
Q Consensus       342 ~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~  421 (444)
                      .. .-..-|..+.+.+.=.+..++..|+.+|..+....+    ..     ..-+...|.+.+... ++.+|++|...|+.
T Consensus       461 a~-~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~  529 (865)
T KOG1078|consen  461 AP-NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKN  529 (865)
T ss_pred             CC-CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----Cc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence            01 111223333333322466677888888887774211    11     123444455556555 89999999999998


Q ss_pred             HHhh
Q 038250          422 LNPH  425 (444)
Q Consensus       422 l~~~  425 (444)
                      +...
T Consensus       530 l~~~  533 (865)
T KOG1078|consen  530 LEEK  533 (865)
T ss_pred             hhhh
Confidence            8843

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.51  E-value=0.15  Score=33.28  Aligned_cols=40  Identities=15%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             cccccccCcCceecC---CcchhcHHHHHHHHHhcCCCCCCCC
Q 038250           39 CPISLDLMKDPVTLS---TGITYDRENIEKWIHEDGNITCPVT   78 (444)
Q Consensus        39 Cpic~~~~~~Pv~~~---cg~~~c~~ci~~~~~~~~~~~CP~c   78 (444)
                      |-+|.++...-+.-+   |+-.+...|+..||.......||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            667888877776654   8888999999999944444479987

; PDB: 3NW0_A 2CT0_A.

>PRK14707 hypothetical protein; Provisional

Probab=91.48  E-value=35  Score=40.90  Aligned_cols=268  Identities=12%  Similarity=0.049  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      ..+.-++...+.-.   +...++.|+..|..+...++..+..+ ..-+|..+++-+..|.+.     + -.+.|+..|..
T Consensus       163 ~~~~lllNafSKw~---~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~-----~-~c~~aa~~la~  232 (2710)
T PRK14707        163 QNISLALNAFSKWS---DNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDT-----P-DCGNAVSALAE  232 (2710)
T ss_pred             ccHHHHHHHhhcCC---CCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCC-----h-hHHHHHHHHHH
Confidence            34556666666543   55678888888887776666666666 444577888888777332     3 34455566664


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhc-CC-HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKS-GD-LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      .++.++.-+. -.+...+-..+..|+. .+ +.+...+..+-..+ ..+...++.+ ...++-..|-.+-+-+ +..+-.
T Consensus       233 ~l~~~~~l~~-~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl-~~~~~l~~al-~~q~vanalNalSKwp-d~~vc~  308 (2710)
T PRK14707        233 RLADESRLRN-ELKPQELGNALNALSKWADTPVCAAAASALAERL-VDDPGLRKAL-DPINVTQALNALSKWA-DLPVCA  308 (2710)
T ss_pred             HHcCcHHHHH-hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhhHHHHHhc-CHHHHHHHHhhhhcCC-CchHHH
Confidence            5565544444 4445566666666654 34 44444444444455 5677788877 4334333444443444 344444


Q ss_pred             HHHHHH-HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccc-hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250          280 ASLVVV-YRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRS-LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK  356 (444)
Q Consensus       280 ~a~~aL-~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l  356 (444)
                      .|+..| ..|..+.+    .+ .-.+.-.+..++.-|+.- +.. ..+.|..+-..|+.+++-+..+  +.-++..+++-
T Consensus       309 ~Aa~~la~rl~~d~~----l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l--~~q~~a~~lNa  381 (2710)
T PRK14707        309 EAAIALAERLADDPE----LC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL--EPQGVSSVLNA  381 (2710)
T ss_pred             HHHHHHHHHHhccHh----hh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc--chhHHHHHHhh
Confidence            444444 46665433    33 445555677777777743 444 4455555555777777666665  34566667676


Q ss_pred             Hhhc-ChhHHHHHHHHHHH-HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250          357 ILRV-SDLATEFAVSILWK-LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS  416 (444)
Q Consensus       357 l~~~-~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~  416 (444)
                      +.+- +......|+..|.. +..      +......+..-.|.-++..|..=+...+...|+
T Consensus       382 lsKWp~~~~c~~aa~~LA~~l~~------d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa  437 (2710)
T PRK14707        382 LSKWPDTPVCAAAASALAEHVVD------DLELRKGLDPQGVSNALNALAKWPDLPICGQAV  437 (2710)
T ss_pred             hhcCCCchHHHHHHHHHHHHhcc------ChhhhhhcchhhHHHHHHHhhcCCcchhHHHHH
Confidence            6653 33444444444443 433      334445555555566666555543434433333

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.44  E-value=2.8  Score=42.72  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc----chHHHHHHHHHHhcCChhh
Q 038250          264 PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCSSDYG  339 (444)
Q Consensus       264 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~  339 (444)
                      .+.+++.++ +...+..|+..|..++.+..    ....+++..++..|.+++.+++.    .+...++.++..|-.+.--
T Consensus        87 ~i~e~l~~~-~~~~~~~a~k~l~sls~d~~----fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   87 RIMEILTEG-NNISKMEALKELDSLSLDPT----FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHhhccccHH----HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            345566677 66677778899999988876    88999999999999999997744    4555566666655443321


Q ss_pred             HHHHhcCCCChHHHHHHHhh--cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          340 RGDAYNNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       340 ~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      --.. +...+|..++.++.-  -...+-..|+..|-++..+    +....+.+.++--+..|+..++.. +..+.-.|.+
T Consensus       162 sW~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~----s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aia  235 (713)
T KOG2999|consen  162 SWES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG----SDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIA  235 (713)
T ss_pred             eeee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC----ChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHH
Confidence            1111 222334444444321  2344568899999998884    344455555788889999999988 7777777888


Q ss_pred             HHHHH
Q 038250          418 LLKLL  422 (444)
Q Consensus       418 ll~~l  422 (444)
                      +++.+
T Consensus       236 l~nal  240 (713)
T KOG2999|consen  236 LLNAL  240 (713)
T ss_pred             HHHHH
Confidence            77665

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=91.11  E-value=1  Score=33.18  Aligned_cols=67  Identities=13%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250          234 RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG  306 (444)
Q Consensus       234 ~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g  306 (444)
                      ...|.+++.+++ ..+.....+ ...++++.++++.++.....++-.|..+|.-++...+    -...+.+.|
T Consensus         4 lKaaLWaighIg-ss~~G~~lL-~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~----G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIG-SSPLGIQLL-DESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE----GAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHh-cChHHHHHH-hhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH----HHHHHHHcC
Confidence            467999999995 566667777 5679999999999977567899999999999988765    555554444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.03  E-value=0.94  Score=41.32  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhhcCCChhhhhhcccCCcH---HH----HHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250          190 SVLEEILSTLTLLFPLAGEGLTYLGSASSM---RC----MVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA  261 (444)
Q Consensus       190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i---~~----Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~  261 (444)
                      .-|+.|+.+|. -++..+.|...|...+-.   +.    |+++|.. ++.-.||.|+.+|.+|+..+......++.+.+.
T Consensus       139 SPqrlaLEaLc-KLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALC-KLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHH-HhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            46899999999 788888898887755543   33    3334433 478899999999999988888888888888999


Q ss_pred             HHHHHHHhcCC
Q 038250          262 IEPLFKLIKEP  272 (444)
Q Consensus       262 i~~Lv~ll~~~  272 (444)
                      |..|+..+++.
T Consensus       218 i~~Li~FiE~a  228 (257)
T PF12031_consen  218 ISHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.02  E-value=11  Score=37.13  Aligned_cols=240  Identities=15%  Similarity=0.163  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +++..+++.|.+.   .....+..++..|..-+.+ +.-|..+...|.+..+++.+...  +    +..+..-++.++..
T Consensus        21 Dev~ylld~l~~~---~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~--~----~d~~~~l~~a~i~~   90 (361)
T PF07814_consen   21 DEVEYLLDGLESS---SSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDA--P----DDDILALATAAILY   90 (361)
T ss_pred             HHHHHHHhhcccC---CCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccc--c----chHHHHHHHHHHHH
Confidence            5677778877733   2556788888888888865 67899999999999999999321  1    12244444444444


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHH-HHHHHHHhcchhhHHHhhcccccHHHHHHHhcC--------
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAV-LVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE--------  271 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~-~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~--------  271 (444)
                      .++.+..+-..+-+.+.+..++.+|..... ......- .-=.++ +   ...+      +.+...-.++..        
T Consensus        91 ~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l-s---k~~~------~~~~~~~~~~~~~~~~~~~~  160 (361)
T PF07814_consen   91 VLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL-S---KVQQ------KSRSLCKELLSSGSSWKSPK  160 (361)
T ss_pred             HHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhh-h---HHHH------HHHHHHHHHHhccccccccC
Confidence            666666665565567778888888872100 0000000 000001 0   0011      111111111100        


Q ss_pred             CCChHHHHHHHHHHHHHhcC-----------CCCCCchhHHHHhcCcHHHHHHHhhc----c------------ccchHH
Q 038250          272 PICPTATKASLVVVYRTITS-----------ASATEKPIQKFVDMGLVSLLLEMLVD----A------------QRSLCE  324 (444)
Q Consensus       272 ~~~~~~~~~a~~aL~~L~~~-----------~~~~~~~~~~i~~~g~v~~Lv~lL~~----~------------~~~~~~  324 (444)
                      ......+-.|+.+|-.++..           ..+-+-.+..+.+.|+++.+++++.+    .            +-...+
T Consensus       161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~  240 (361)
T PF07814_consen  161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE  240 (361)
T ss_pred             CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence            11223344455555555310           00001246677788999999999862    1            112457


Q ss_pred             HHHHHHHHhcCCh-hhHHHHh-cCCCChHHHHHHH-hhcC---hhHHHHHHHHHHHHcccccc
Q 038250          325 KALSVLDGLCSSD-YGRGDAY-NNSLIFPVIVKKI-LRVS---DLATEFAVSILWKLCKNEER  381 (444)
Q Consensus       325 ~a~~~L~~L~~~~-~~~~~i~-~~~g~i~~Lv~ll-~~~~---~~~~~~a~~~L~~L~~~~~~  381 (444)
                      .++.+|.+-+... +++...+ ...+.++.+...+ ....   ......++++|.|++.++|.
T Consensus       241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~  303 (361)
T PF07814_consen  241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS  303 (361)
T ss_pred             HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence            7888888877533 3444442 2233333333333 2222   23357899999999997654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.74  E-value=3.5  Score=35.76  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=74.2

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      ..+..+..+|++.+++.+..++..+..++..++  .+.+.. ..--+..|+.+|++...+.+++.++.+|..|...-...
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345667788889899999999999988853321  334412 22367888999998866788999999998886554311


Q ss_pred             CchhHHHHhc---CcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          296 EKPIQKFVDM---GLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       296 ~~~~~~i~~~---g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      .+...++...   +.++.+++++.+  ....+.++.+|..|-.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            2234444332   345555555543  4566777777776653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.68  E-value=9.3  Score=38.55  Aligned_cols=186  Identities=18%  Similarity=0.170  Sum_probs=116.5

Q ss_pred             cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-cCC---CChHHHHHHHHHHHHHhcCC
Q 038250          218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-KEP---ICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~---~~~~~~~~a~~aL~~L~~~~  292 (444)
                      .+..++.+..+. ++..+..++..|..|.-.-++ -..+   ...+..+...+ ...   ..+...+...|....|....
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            566677765544 577777888888888422111 1122   23444444444 111   13455666666666666543


Q ss_pred             CCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhh-------------HHHHhcCCCChHHHHHHHh
Q 038250          293 SATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYG-------------RGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~Lv~ll~  358 (444)
                      .   ..     ....+..|+++|.+  +.+...++..+..|..+ ++.             ++++.  .-.+|.|++...
T Consensus       266 ~---~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~  333 (415)
T PF12460_consen  266 H---PL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFK  333 (415)
T ss_pred             C---ch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHh
Confidence            2   01     12256678888875  66778899999988886 331             22221  236777777777


Q ss_pred             hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +.+...+...+.+|..+-.+.|.    .+..---...+|.|++-|... +..++..+...|..+-.
T Consensus       334 ~~~~~~k~~yL~ALs~ll~~vP~----~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  334 EADDEIKSNYLTALSHLLKNVPK----SVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILE  394 (415)
T ss_pred             hcChhhHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            66666888999999999997663    232222366889999999877 77888888887766654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=90.61  E-value=0.34  Score=48.28  Aligned_cols=188  Identities=13%  Similarity=-0.002  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhc-ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----ch---hhHHHhhccc
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYL-GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS----DH---RKVNVLLDIE  259 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~----~~---~~~~~i~~~~  259 (444)
                      +.-+...|++++. ..-.++..+.-+ ....+...+...|.+..-..|+.++|+++|++..    -+   ...+.+ . .
T Consensus       404 ~~lv~~aA~Ra~~-VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-s-g  480 (728)
T KOG4535|consen  404 NRLVKAAASRALG-VYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-S-G  480 (728)
T ss_pred             HHHHHHHHHhhce-eEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-H-H
Confidence            4446667777776 555566555432 2345566666777666778899999999999421    11   122222 1 1


Q ss_pred             ccHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCC
Q 038250          260 GAIEPLFKLIKE--PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       260 g~i~~Lv~ll~~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~  336 (444)
                      -.|..+++.-..  ..+..++.+|.++|.|+...-+.-.+.-......|.+..++.... .+...++-+++-+++||.++
T Consensus       481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            234444444322  234678999999999997542100001112233444444444433 45778999999999999987


Q ss_pred             hhhHHHH-hcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHccc
Q 038250          337 DYGRGDA-YNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       337 ~~~~~~i-~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~  378 (444)
                      +.-.-+- -....+.+.|..++.. .+-.++-.|+++|..-...
T Consensus       561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            6542221 1223456677776665 3778888898888776653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.58  E-value=25  Score=37.60  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250          142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC  221 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~  221 (444)
                      .+.--++-++..+..++.-     ++-.|..+..+|.+.       ++.+.-+|...|. .++.++..-..     +...
T Consensus       222 LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~st-------ssaV~fEaa~tlv-~lS~~p~alk~-----Aa~~  283 (948)
T KOG1058|consen  222 LQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSST-------SSAVIFEAAGTLV-TLSNDPTALKA-----AAST  283 (948)
T ss_pred             HHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcC-------CchhhhhhcceEE-EccCCHHHHHH-----HHHH
Confidence            3444445555555544432     233566677777432       3556666666676 56666543322     1334


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250          222 MVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ  300 (444)
Q Consensus       222 Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  300 (444)
                      +++++... +..++--...-|..+.   ..+...+   .|.+--.+.+|..+ +.++++.++.....|+.+.     |..
T Consensus       284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il---~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssr-----Nve  351 (948)
T KOG1058|consen  284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL---QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSR-----NVE  351 (948)
T ss_pred             HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH---HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhc-----cHH
Confidence            44444322 2333333344444442   2333334   36666777888888 7889999998888888776     455


Q ss_pred             HHHhcCcHHHHHH-Hhhcc------ccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250          301 KFVDMGLVSLLLE-MLVDA------QRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL  372 (444)
Q Consensus       301 ~i~~~g~v~~Lv~-lL~~~------~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  372 (444)
                      .++.     .|-+ +....      +..-+..-+.+|...+. .++.-      +.+|+.|++.+...++   +.|..+|
T Consensus       352 div~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a------atvV~~ll~fisD~N~---~aas~vl  417 (948)
T KOG1058|consen  352 DIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA------ATVVSLLLDFISDSNE---AAASDVL  417 (948)
T ss_pred             HHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH------HHHHHHHHHHhccCCH---HHHHHHH
Confidence            5443     1111 11111      22345666677776654 23322      3457788887754443   3344444


Q ss_pred             HHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          373 WKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       373 ~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      .-+..      .-..-..+++..+..|++-+..-.+.++-+.|.|++.-..
T Consensus       418 ~FvrE------~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  418 MFVRE------AIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HHHHH------HHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            33322      1111123356677777775544336677788888765443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=90.45  E-value=24  Score=36.54  Aligned_cols=143  Identities=8%  Similarity=0.025  Sum_probs=71.2

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL  205 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~  205 (444)
                      .+.++|.+-+++.-.-+..++++.+..++.++-  -..+.+ -.|..|-.+|++.       ....+-.|+++|. -++.
T Consensus       264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~-------rv~~rFsA~Riln-~lam  332 (898)
T COG5240         264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKST-------RVVLRFSAMRILN-QLAM  332 (898)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcc-------hHHHHHHHHHHHH-HHHh
Confidence            344555554433335577888888888776541  111111 1344555555432       4567888888888 4444


Q ss_pred             ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250          206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV  285 (444)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL  285 (444)
                      -...+..+.+    +.+-+++.+.+-.+...|..+|..-  +.+++...+   -..|+..++=++++    .+..+..+|
T Consensus       333 ~~P~kv~vcN----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL---v~~I~sfvhD~SD~----FKiI~ida~  399 (898)
T COG5240         333 KYPQKVSVCN----KEVESLISDENRTISTYAITTLLKT--GTEETIDRL---VNLIPSFVHDMSDG----FKIIAIDAL  399 (898)
T ss_pred             hCCceeeecC----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH---HHHHHHHHHhhccC----ceEEeHHHH
Confidence            3332222221    1222333445555555566555544  344444444   13455555555443    444455555


Q ss_pred             HHHhcCC
Q 038250          286 YRTITSA  292 (444)
Q Consensus       286 ~~L~~~~  292 (444)
                      +.||..-
T Consensus       400 rsLsl~F  406 (898)
T COG5240         400 RSLSLLF  406 (898)
T ss_pred             HHHHhhC
Confidence            5555443

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.42  E-value=0.2  Score=46.80  Aligned_cols=47  Identities=26%  Similarity=0.514  Sum_probs=36.5

Q ss_pred             CCCCccccccccccCc---CceecCCcchhcHHHHHHHHHhcCC--CCCCCCC
Q 038250           32 TTPNHFRCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGN--ITCPVTN   79 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c~   79 (444)
                      .+..-|+||+-.+.-.   .|+.+.|||..-+..+.+.- ..|.  +.||.|-
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS-~nG~~~FKCPYCP  383 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLS-QNGVLSFKCPYCP  383 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHh-hcCcEEeeCCCCC
Confidence            3444599999887755   48899999999999988755 4554  7899994

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.24  E-value=15  Score=41.08  Aligned_cols=220  Identities=12%  Similarity=0.117  Sum_probs=114.7

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHH-HhhcccccccchHHHHHHHHHHHhhcCCCh-hhhhhcccC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAF-ETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLTYLGSA  216 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~~i~~~  216 (444)
                      +...|.++-..|..++.. +.... +++.- +..+-+.| +++...    ....+..++.+|..++...+ +....+  .
T Consensus       667 ~~~vQkK~yrlL~~l~~~-~s~~~-~~~q~-i~~I~n~L~ds~qs~----~~~~~~~rl~~L~~L~~~~~~e~~~~i--~  737 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSS-PSGEG-LVEQR-IDDIFNSLLDSFQSS----SSPAQASRLKCLKRLLKLLSAEHCDLI--P  737 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcC-Cchhh-HHHHH-HHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccHHHHHHH--H
Confidence            667889999999998866 22222 22111 22233333 222111    34566667777765555444 333332  2


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc--cccHHHHHHHhcCC--CC-hHHHHHHHHHHHHHhcC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI--EGAIEPLFKLIKEP--IC-PTATKASLVVVYRTITS  291 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~--~g~i~~Lv~ll~~~--~~-~~~~~~a~~aL~~L~~~  291 (444)
                      -.|+-++=.++..+...+++|-..|..|+..  ......|.+  ...|...+.++..+  .+ ...+...+-++..+...
T Consensus       738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  738 KLIPEVILSLKEVNVKARRNAFALLVFIGAI--QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHHHHHhcccccHHHHhhHHHHHHHHHHH--HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            3344444444667899999999999999520  000000000  11455555555543  12 22222224455555443


Q ss_pred             CCCCCchhHHHHhcCcHHH----HHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          292 ASATEKPIQKFVDMGLVSL----LLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       292 ~~~~~~~~~~i~~~g~v~~----Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                             -..+.+.+.++.    +...|.++++++++.|++.+..++. .++..-.- -....+|.+..+....+..++.
T Consensus       816 -------~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~  887 (1176)
T KOG1248|consen  816 -------FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRK  887 (1176)
T ss_pred             -------HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHH
Confidence                   223334344444    4445557799999999999999886 33333222 1123456666655554555555


Q ss_pred             HHHHHHHHHcc
Q 038250          367 FAVSILWKLCK  377 (444)
Q Consensus       367 ~a~~~L~~L~~  377 (444)
                      ..-..|-.|..
T Consensus       888 Kvr~LlekLir  898 (1176)
T KOG1248|consen  888 KVRLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.22  E-value=1.9  Score=44.67  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL  268 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l  268 (444)
                      .....-|...+.......++...     .+|..+++|....+..+|..|...|-.+|..++++...|      ...|++|
T Consensus        36 ~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~Ql  104 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQL  104 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHH
Confidence            44555566666544444554433     457777888888889999999999999976555555444      5679999


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---ccccchHHHHHHHHH
Q 038250          269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---DAQRSLCEKALSVLD  331 (444)
Q Consensus       269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~  331 (444)
                      |.++ ++.....+-.+|..|-..+.     +      |.+..|...+.   .+++.+++.++..|.
T Consensus       105 L~td-d~~E~~~v~~sL~~ll~~d~-----k------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  105 LQTD-DPVELDAVKNSLMSLLKQDP-----K------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             TT----HHHHHHHHHHHHHHHHH-H-----H------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             Hhcc-cHHHHHHHHHHHHHHHhcCc-----H------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            9987 66655556666665554432     1      23444444444   456667777777664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=90.20  E-value=17  Score=34.89  Aligned_cols=172  Identities=12%  Similarity=0.062  Sum_probs=106.2

Q ss_pred             CcHHHHH-HHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          217 SSMRCMV-WFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       217 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      +.+..|+ ..+++.++.+|+.|...|+-.+-.+.+...      ..++.+.+.++.+ +..++..|+.+|..+.....  
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~------~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g--   96 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK------EHLPLFLQALQKD-DEEVKITALKALFDLLLTHG--   96 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcC--
Confidence            4555555 567788999999999999988655543222      3367788888766 78999999999998865543  


Q ss_pred             CchhHH-------HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc----ChhH
Q 038250          296 EKPIQK-------FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV----SDLA  364 (444)
Q Consensus       296 ~~~~~~-------i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~  364 (444)
                      ......       ......+..+.+.|.+.+++++..|+..++.|--.+....    ....+..|+-+-.+.    +...
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~L  172 (298)
T PF12719_consen   97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRL  172 (298)
T ss_pred             chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHH
Confidence            001111       1223567778888887788888888888887764332211    022334444333332    2333


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      ++.-...+-..|..     ....++.+..+.++.+..++...
T Consensus       173 rQ~L~~Ffp~y~~s-----~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  173 RQCLSVFFPVYASS-----SPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHhCc
Confidence            33333334444543     23345666778888888777765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.11  E-value=0.18  Score=53.38  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=33.8

Q ss_pred             cccccccccCcCcee-cCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250           37 FRCPISLDLMKDPVT-LSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      -+|..|.-.+.-|++ ..|||.|.++|++     .+...||.|.-
T Consensus       841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence            599999999999976 4999999999987     45678999965

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.65  E-value=1.2  Score=40.64  Aligned_cols=123  Identities=14%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcC-------C-------CChHHHHHHHHHHHHHhcCCC
Q 038250          231 LSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKE-------P-------ICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       231 ~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~-------~-------~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ..+|++|..+|.|++ +.-   .+-+.| . .-++..|++..-.       +       ....-++-|+.+|..|+..+.
T Consensus        80 ~~lREnalV~laNis-gqLdLs~~~e~I-~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~  156 (257)
T PF12031_consen   80 EQLRENALVTLANIS-GQLDLSDYPESI-A-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN  156 (257)
T ss_pred             HHHhhcceEeeeeee-eeeecccCchHH-H-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc
Confidence            467888888888883 332   222333 1 1223333333211       0       123568999999999999987


Q ss_pred             CCCchhHHHHhcC-------cHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHH-HHhcCCCChHHHHHHHhhc
Q 038250          294 ATEKPIQKFVDMG-------LVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRG-DAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       294 ~~~~~~~~i~~~g-------~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~ll~~~  360 (444)
                          |...+...+       .+..|+++|.. .++..+|-|+.+|.+|+..++.-. .+..+.+.|..|+..+...
T Consensus       157 ----NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a  228 (257)
T PF12031_consen  157 ----NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA  228 (257)
T ss_pred             ----CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence                766666544       44555666653 477789999999999998776555 4558889999999988654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.60  E-value=5.5  Score=44.29  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=117.3

Q ss_pred             cHHHHHHHHh----cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          218 SMRCMVWFLK----SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       218 ~i~~Lv~lL~----~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ..|.++...+    .++++++..|..+|+.+.-.+.+.++      .-+|.|+.++....+|.++.++..++.-++..-.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce------s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE------SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3455666653    24799999999999999766555443      3479999999966589999999999999887654


Q ss_pred             CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHH
Q 038250          294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILW  373 (444)
Q Consensus       294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~  373 (444)
                          |   +++. --+.|..-|.+.++.+++.|+.+|..|-..+     ++.--|-++.+...+..++..+...|-..+-
T Consensus       994 ----n---lie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  994 ----N---LIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             ----c---ccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                2   2221 3456777888899999999999999997633     2244688999999998888899988888888


Q ss_pred             HHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          374 KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       374 ~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      .|+..+     ..+.     +.+|.++.-|.++
T Consensus      1061 Els~k~-----n~iy-----nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKG-----NTIY-----NLLPDILSRLSNG 1083 (1251)
T ss_pred             Hhhhcc-----cchh-----hhchHHHHhhccC
Confidence            888742     1122     4556666655555

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.47  E-value=0.081  Score=58.31  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=43.5

Q ss_pred             CCCcCCCCCCccccccccccCc-CceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           26 GGEMELTTPNHFRCPISLDLMK-DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        26 ~~~~~~~~~~~~~Cpic~~~~~-~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      +.-.....-..+.|+||+++++ .-.+..|||.||..|+..|+  .....||.|....
T Consensus      1143 ~~~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l--~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1143 DVRYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWL--YASSRCPICKSIK 1198 (1394)
T ss_pred             hHHHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHH--HHhccCcchhhhh
Confidence            3334445566689999999999 55667899999999999999  5667899997443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=89.45  E-value=16  Score=35.07  Aligned_cols=161  Identities=15%  Similarity=0.078  Sum_probs=102.0

Q ss_pred             ccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-hhhh---
Q 038250          136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLT---  211 (444)
Q Consensus       136 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~---  211 (444)
                      ++.+...+..|+..|...+--+.+.    .+. .++.+...++.   +    +..++..|+.++..++..+. +.-.   
T Consensus        37 ~~~~~~vR~~al~cLGl~~Lld~~~----a~~-~l~l~~~~~~~---~----~~~v~~~al~~l~Dll~~~g~~~~~~~~  104 (298)
T PF12719_consen   37 QSSDPAVRELALKCLGLCCLLDKEL----AKE-HLPLFLQALQK---D----DEEVKITALKALFDLLLTHGIDIFDSES  104 (298)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhChHH----HHH-HHHHHHHHHHh---C----CHHHHHHHHHHHHHHHHHcCchhccchh
Confidence            4458899999999999988665422    111 35666666632   2    47889999998885554433 1111   


Q ss_pred             ----hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-cccHHHHHHHhcCCC---ChHHHHHHHH
Q 038250          212 ----YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-EGAIEPLFKLIKEPI---CPTATKASLV  283 (444)
Q Consensus       212 ----~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-~g~i~~Lv~ll~~~~---~~~~~~~a~~  283 (444)
                          .......+..+...|.+.+++++..|+..+..|.- ..    .+ .. ..++..|+-+.-++.   +...++.-..
T Consensus       105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL-~~----~i-~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL-SG----RI-SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cC----CC-CcHHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                12234567888888988999999999999999842 22    22 22 345666666655442   3455555555


Q ss_pred             HHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc
Q 038250          284 VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA  318 (444)
Q Consensus       284 aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~  318 (444)
                      .+-..+..+.    ..+..+..+.++.+-.+....
T Consensus       179 Ffp~y~~s~~----~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  179 FFPVYASSSP----ENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHcCCH----HHHHHHHHHHHHHHHHHHhCc
Confidence            5556666654    345556666788877777643

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.38  E-value=17  Score=38.70  Aligned_cols=109  Identities=17%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             cCcHHHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccc
Q 038250          305 MGLVSLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEERE  382 (444)
Q Consensus       305 ~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~  382 (444)
                      .++|..|+.. +++.+.+++..|+-+|.-++.         .+...+|..|++|... ++-++..|+-+|..-|..++. 
T Consensus       553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-  622 (929)
T KOG2062|consen  553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-  622 (929)
T ss_pred             hhhHHHhhcccccccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-
Confidence            3567777777 567788999999999998776         4445567777877664 888999999999888885432 


Q ss_pred             hHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCc
Q 038250          383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDS  434 (444)
Q Consensus       383 ~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~~~  434 (444)
                       .+.          -.|++-|-+++..-+|+.|.-.+.++--......|..+
T Consensus       623 -~eA----------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv  663 (929)
T KOG2062|consen  623 -KEA----------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV  663 (929)
T ss_pred             -HHH----------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH
Confidence             111          12333333454667777777777777655555555543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.21  E-value=6.3  Score=44.00  Aligned_cols=144  Identities=13%  Similarity=0.031  Sum_probs=92.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHH
Q 038250          222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQK  301 (444)
Q Consensus       222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  301 (444)
                      ++.+|....+.+|..-...|.-|+...  .|+.  ...=+++.|+..|++. +...+.+-...|..++..-      -.+
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~k--sND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~V------G~r  651 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFF--GKEK--SNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFV------GWR  651 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHh--hhcc--cccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEE------eee
Confidence            334554455667766666666664321  1111  1223678899999887 6766665555555555442      223


Q ss_pred             HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          302 FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       302 i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      -++.+.+|.|.+-|.++++.+...|+..|.-|+..+--++..+.  ..+....-+|-..+.=++..++.++..++..
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            37888999999999999999999999999999986655554422  1222222333335666788888888887764

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=88.83  E-value=1.3  Score=39.89  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC-----hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHH
Q 038250          323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS-----DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQ  397 (444)
Q Consensus       323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~  397 (444)
                      +-.|+.+|.-++++++.+.-+ +++..--.+...|...+     +..+-.++++++.|.++   ++...........++|
T Consensus       117 vcnaL~lLQclaShPetk~~F-l~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkN---dsq~vi~fLltTeivP  192 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVF-LDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKN---DSQYVIKFLLTTEIVP  192 (315)
T ss_pred             HHHHHHHHHHHhcCcchheee-eecccceeeHhhhhccccCCccceeeehHHHHHHHHHhC---CCHHHHHHHHhhhHHH
Confidence            467888899999999999888 77764444444443321     23556899999999997   5677777778999999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          398 KLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       398 ~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .+++++..+ ++--|--|..+++.+-.
T Consensus       193 LcLrIme~g-SElSktvaifI~qkil~  218 (315)
T COG5209         193 LCLRIMELG-SELSKTVAIFIFQKILG  218 (315)
T ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHHhc
Confidence            999999999 88888888888877643

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=88.72  E-value=0.18  Score=45.21  Aligned_cols=48  Identities=17%  Similarity=0.414  Sum_probs=36.8

Q ss_pred             Ccccccccccc-CcCc-ee--c--CCcchhcHHHHHHHHHhcCCCCCC--CCCcccC
Q 038250           35 NHFRCPISLDL-MKDP-VT--L--STGITYDRENIEKWIHEDGNITCP--VTNRVLT   83 (444)
Q Consensus        35 ~~~~Cpic~~~-~~~P-v~--~--~cg~~~c~~ci~~~~~~~~~~~CP--~c~~~~~   83 (444)
                      ++-.||+|..- +-+| +.  +  .|-|..|-+|+.+.| +.|.-.||  .|++.+.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF-s~GpAqCP~~gC~kILR   64 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF-SRGPAQCPYKGCGKILR   64 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHHH
Confidence            34689999853 4455 21  1  499999999999999 78999999  6876654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=88.26  E-value=0.26  Score=49.06  Aligned_cols=183  Identities=11%  Similarity=0.006  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc---CcHHHH
Q 038250          235 RNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM---GLVSLL  311 (444)
Q Consensus       235 ~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~---g~v~~L  311 (444)
                      ..|.+++.-+ -.++..+.-++....+...+...+.+. ..-.+..++|++.|++..-..+-.+.....+.   -.+..+
T Consensus       409 ~aA~Ra~~Vy-VLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~  486 (728)
T KOG4535|consen  409 AAASRALGVY-VLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM  486 (728)
T ss_pred             HHHHhhceeE-EeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            3344444443 344544544434445556666666654 45678889999998863311000122222221   123333


Q ss_pred             HHHhh---ccccchHHHHHHHHHHhcCChhhHHHH---hcCCCChHHHHHHH-hhcChhHHHHHHHHHHHHccccccchH
Q 038250          312 LEMLV---DAQRSLCEKALSVLDGLCSSDYGRGDA---YNNSLIFPVIVKKI-LRVSDLATEFAVSILWKLCKNEEREEK  384 (444)
Q Consensus       312 v~lL~---~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~  384 (444)
                      +..-.   .....++.++..+|.++...-+.-...   ....|.+..++... ......++=+|+.++.||.++     +
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-----~  561 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN-----P  561 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC-----c
Confidence            33322   125678899999999987633211111   00112222222211 123567888999999999986     2


Q ss_pred             HH-HHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          385 TA-FAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       385 ~~-~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .. .+.+- ..-+++.|..|+.+..+-++|-.|+..|.....
T Consensus       562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            23 33333 466788999999888788999999987765543

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.08  E-value=0.68  Score=45.10  Aligned_cols=46  Identities=15%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             CCccccccccccCcC---ceecCCcchhcHHHHHHHHHh---cCC---CCCCCCC
Q 038250           34 PNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHE---DGN---ITCPVTN   79 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~---~~~---~~CP~c~   79 (444)
                      ...|-|.||.+...-   =+.++|+|.||+.|...|+..   .|.   ..||.++
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            344899999887653   345599999999999999852   222   3577653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.92  E-value=42  Score=35.97  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      ..|..+..+|.+.++.++-.|+.+|..| +.++..-..-      ...+++++.+..+-.++-..+--|..+...     
T Consensus       243 ~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~~-----  310 (948)
T KOG1058|consen  243 RYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKAL-----  310 (948)
T ss_pred             HHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhhh-----
Confidence            3456666666666666666666666666 4444322222      122333332221122232233333333311     


Q ss_pred             chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-------ChhHHHHHH
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-------SDLATEFAV  369 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~  369 (444)
                       +...+  .|.+--++.+|...+-+++.+++.+...|+.+. +-.++      +..|-+-+...       +..-++.-+
T Consensus       311 -~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvedi------v~~Lkke~~kT~~~e~d~~~~yRqlLi  380 (948)
T KOG1058|consen  311 -HEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDI------VQFLKKEVMKTHNEESDDNGKYRQLLI  380 (948)
T ss_pred             -hHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHH------HHHHHHHHHhccccccccchHHHHHHH
Confidence             12222  234555667777888889999998888887632 22222      11222222221       112245666


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .++...+..-|+    .     .+.+|+.|++++.+. +   .+.|...|..+++
T Consensus       381 ktih~cav~Fp~----~-----aatvV~~ll~fisD~-N---~~aas~vl~FvrE  422 (948)
T KOG1058|consen  381 KTIHACAVKFPE----V-----AATVVSLLLDFISDS-N---EAAASDVLMFVRE  422 (948)
T ss_pred             HHHHHHhhcChH----H-----HHHHHHHHHHHhccC-C---HHHHHHHHHHHHH
Confidence            777776664332    2     356788899988766 3   2344445555554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.38  E-value=44  Score=36.52  Aligned_cols=156  Identities=12%  Similarity=0.031  Sum_probs=101.4

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK--SGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~L~  245 (444)
                      +++..|.++...+       ..++...-+.+|...++.+++-. ...++-..|.++.+..  ++++.+-..+-.++..| 
T Consensus       530 ~ild~L~qlas~~-------s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el-  600 (1005)
T KOG2274|consen  530 MILDGLLQLASKS-------SDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL-  600 (1005)
T ss_pred             HHHHHHHHHcccc-------cHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH-
Confidence            4555666666322       36677777777875566665433 3344666777777653  45787777788888888 


Q ss_pred             hcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccc
Q 038250          246 SSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRS  321 (444)
Q Consensus       246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~  321 (444)
                      ....++...+ . .-.||.||..|..+.   .......|+..|..+.++.+  +..-..++. -+.|++.++.- +++..
T Consensus       601 ~q~~~~~g~m-~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp--~pL~~~l~~-~~FpaVak~tlHsdD~~  675 (1005)
T KOG2274|consen  601 LQIAANYGPM-Q-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP--SPLPNLLIC-YAFPAVAKITLHSDDHE  675 (1005)
T ss_pred             HHHHHhhcch-H-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC--CCccHHHHH-HHhHHhHhheeecCChH
Confidence            3444444445 2 468999999998762   14566777777777777765  223333333 37888888874 45666


Q ss_pred             hHHHHHHHHHHhcCCh
Q 038250          322 LCEKALSVLDGLCSSD  337 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~  337 (444)
                      .-.++-.+|+.+....
T Consensus       676 tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  676 TLQNATECLRALISVT  691 (1005)
T ss_pred             HHHhHHHHHHHHHhcC
Confidence            7777888888776643

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.18  E-value=19  Score=39.15  Aligned_cols=183  Identities=12%  Similarity=0.097  Sum_probs=122.3

Q ss_pred             cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250          228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL  307 (444)
Q Consensus       228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~  307 (444)
                      +..+...-.|.+++...++....+...+   .-++...+..+..+..+.++-.|++++..-+..+      .-.=...+.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~---~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~------vl~~~~p~i  531 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL---QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK------VLLSLQPMI  531 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH---HHHHHHHHHhhccCCCCchhHHHHHHHHhccCce------eccccchHH
Confidence            3467776788888888855544555555   2456667777766544566666666666555322      222234688


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHH
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKT  385 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~  385 (444)
                      ++.|+++....+.++-...+.+|...+.-+...... .++...|.++.++.+.  ++.+...+--.+-.|+..      +
T Consensus       532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~------~  604 (1005)
T KOG2274|consen  532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI------A  604 (1005)
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH------H
Confidence            999999998888888888999999999877666666 6778889998888663  455555555555555551      1


Q ss_pred             HHHHHHhhChHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhc
Q 038250          386 AFAEALQVGAFQKLLLLLQVGC---ADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       386 ~~~~~~~~g~l~~Ll~ll~~~~---~~~~k~~a~~ll~~l~~~~  426 (444)
                      ....=...-.+|.|+.+|+...   .......|..+|..+-+..
T Consensus       605 ~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t  648 (1005)
T KOG2274|consen  605 ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT  648 (1005)
T ss_pred             HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence            2222224678899999998872   1566777777888665544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.14  E-value=0.97  Score=42.88  Aligned_cols=75  Identities=11%  Similarity=0.092  Sum_probs=47.6

Q ss_pred             CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHH-HHHHHHHHHHhcccCCC
Q 038250           35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT-IRRMIQDWCVENRSYGI  109 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~-l~~~i~~~~~~~~~~~~  109 (444)
                      +.-.|.||.+-..---.++|+|..|--|--+...--..+.||.|+..-....++.... =-.-...|+.++...++
T Consensus        60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI~D~~~~k~~~EK~GI  135 (493)
T COG5236          60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADITDRRQWKGREEKVGI  135 (493)
T ss_pred             ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcchhHhhhcccccceee
Confidence            3468999999888777889999999999887542234578999986543211111100 01123467776665555

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=86.93  E-value=0.34  Score=33.36  Aligned_cols=39  Identities=18%  Similarity=0.422  Sum_probs=25.9

Q ss_pred             CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250           35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      +.|.||.|.+.+..       ..+...+.+....+.....||+|..
T Consensus         1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence            36899999984332       3456666666552334578999965

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.86  E-value=41  Score=35.45  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcc---cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLG---SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL  265 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L  265 (444)
                      .+++--|+-+|+..+..+..+-..+-   ....+..++..+. .++..+..+++.|.|+ -.++..++.+...   ...+
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~-f~~~~g~~~~~s~---~~~i  632 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANL-FSNPAGRELFMSR---LESI  632 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHh-ccCHHHHHHHHHH---HHHH
Confidence            56677788888843333332222111   1234555555554 5678888999999999 5567777777332   2333


Q ss_pred             HHHh---cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCCh
Q 038250          266 FKLI---KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       266 v~ll---~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~  337 (444)
                      ...+   +...+..++.+.+....|++..-      .+.-.+.|..+.|..++...     +-+..-+.+.+|.+|+..+
T Consensus       633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l------~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~  706 (745)
T KOG0301|consen  633 LDPVIEASSLSNKNLQIALATLALNYSVLL------IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD  706 (745)
T ss_pred             hhhhhhhhcccchhHHHHHHHHHHHHHHHH------HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence            3222   22222334443333334544321      11112256667766666532     2234456778888998888


Q ss_pred             hhHHHHhcCCCChHHHHHHHhh
Q 038250          338 YGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       338 ~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      ....++ ...-.+..+++.+.+
T Consensus       707 ~~~~~~-A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  707 ASVIQL-AKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHH-HHhcCHHHHHHHHHH
Confidence            788877 455567788777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.74  E-value=3.5  Score=44.41  Aligned_cols=172  Identities=17%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             HHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH--HHHHHH
Q 038250          149 KIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR--CMVWFL  226 (444)
Q Consensus       149 ~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~--~Lv~lL  226 (444)
                      .|.....+++.+.+.+.+.||+..+...++.+ +     +.+++..+++.+. ++..-.+++........+.  .+-.++
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~-----~~~~~~~il~~l~-n~~~~~~~~~~~~~~~~~~~~~f~~~~  566 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-D-----NEELHRKILGLLG-NLAEVLELRELLMIFEFIDFSVFKVLL  566 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-c-----chhHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            67788888899999999999999999999876 2     4678999999998 5655554444333222222  333344


Q ss_pred             hcCC-HHHHHHHHHHHHHHHhcchh---------h----HHHhh---------cccccHHH-HHHHhcCCCChHHHHHHH
Q 038250          227 KSGD-LSRRRNAVLVLREIVSSDHR---------K----VNVLL---------DIEGAIEP-LFKLIKEPICPTATKASL  282 (444)
Q Consensus       227 ~~~~-~~~~~~A~~~L~~L~s~~~~---------~----~~~i~---------~~~g~i~~-Lv~ll~~~~~~~~~~~a~  282 (444)
                      ..-+ .+.-..|+.+|..+.+..++         .    .+.+.         ....-+.+ +..++..+..+..+..|+
T Consensus       567 ~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal  646 (699)
T KOG3665|consen  567 NKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWAL  646 (699)
T ss_pred             hhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHH
Confidence            3333 36777788888888654221         0    00000         11123334 555666555678899999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHH
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVL  330 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L  330 (444)
                      +++.++.....   ++++.+.+.|+++.+.+.-... ...+++.+...+
T Consensus       647 ~ti~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  647 WTIKNVLEQNK---EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HHHHHHHHcCh---hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            99999998875   5888888899988887776422 333444444333

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=86.45  E-value=0.23  Score=39.61  Aligned_cols=36  Identities=11%  Similarity=0.211  Sum_probs=28.9

Q ss_pred             cCCCCCCccccccccccCcCceec--CCcchhcHHHHH
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTL--STGITYDRENIE   64 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~   64 (444)
                      ....+.+.-.|++|.+.+.+.+..  +|||.|...|+.
T Consensus        71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            345567777899999999977544  999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.40  E-value=52  Score=35.48  Aligned_cols=206  Identities=15%  Similarity=0.152  Sum_probs=125.7

Q ss_pred             HHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh
Q 038250          171 SVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR  250 (444)
Q Consensus       171 ~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~  250 (444)
                      .-|..+|++.+      |. ....|+.-+..+++...+.      ....|.+|+-.-+.+.+++...-.-|..-|...++
T Consensus        38 ~dL~~lLdSnk------d~-~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd  104 (968)
T KOG1060|consen   38 DDLKQLLDSNK------DS-LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD  104 (968)
T ss_pred             HHHHHHHhccc------cH-HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence            45778886542      23 3344444333255544442      34578888888889999998877777777443333


Q ss_pred             hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHH
Q 038250          251 KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVL  330 (444)
Q Consensus       251 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  330 (444)
                       -..+     -|..+-+-|+++ ++.++..|+++|..+          |..++..=++-++-++..+.++.++..|+.+|
T Consensus       105 -LALL-----SIntfQk~L~Dp-N~LiRasALRvlSsI----------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AI  167 (968)
T KOG1060|consen  105 -LALL-----SINTFQKALKDP-NQLIRASALRVLSSI----------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI  167 (968)
T ss_pred             -ceee-----eHHHHHhhhcCC-cHHHHHHHHHHHHhc----------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence             2223     256677778888 787877776666554          33333333344455566677899999999988


Q ss_pred             HHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCCh
Q 038250          331 DGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCAD  409 (444)
Q Consensus       331 ~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~  409 (444)
                      -.|=. .++.+.++      +..+-.+|...++.+...|+.+.-.+|-.        +.+.+ .+-...|..+|-.- ++
T Consensus       168 pKLYsLd~e~k~qL------~e~I~~LLaD~splVvgsAv~AF~evCPe--------rldLI-HknyrklC~ll~dv-de  231 (968)
T KOG1060|consen  168 PKLYSLDPEQKDQL------EEVIKKLLADRSPLVVGSAVMAFEEVCPE--------RLDLI-HKNYRKLCRLLPDV-DE  231 (968)
T ss_pred             HHHhcCChhhHHHH------HHHHHHHhcCCCCcchhHHHHHHHHhchh--------HHHHh-hHHHHHHHhhccch-hh
Confidence            88754 45555554      23343444455888889999998888862        22221 45667888877554 33


Q ss_pred             HHHHHHHHHHHHHHhh
Q 038250          410 KTKEHVSELLKLLNPH  425 (444)
Q Consensus       410 ~~k~~a~~ll~~l~~~  425 (444)
                      =.+-.   ++++|-++
T Consensus       232 WgQvv---lI~mL~RY  244 (968)
T KOG1060|consen  232 WGQVV---LINMLTRY  244 (968)
T ss_pred             hhHHH---HHHHHHHH
Confidence            33333   44444443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.35  E-value=36  Score=37.46  Aligned_cols=145  Identities=13%  Similarity=0.071  Sum_probs=86.4

Q ss_pred             CchHHHHHHHHhhccccc-ccchHHHHHHHHHHHhhc---CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038250          168 GAVSVLAEAFETFSKTCL-DENVSVLEEILSTLTLLF---PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLRE  243 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~-~~~~~~~~~a~~~L~~~l---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~  243 (444)
                      |.++.+++.|.++...+. ..++...+.|+.++..++   ......+..+ +.=.++.+...+++.---.|..||+++..
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            577888888876533321 235566667777666322   2222222221 22235556666677777889999999999


Q ss_pred             HHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccc
Q 038250          244 IVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQ  319 (444)
Q Consensus       244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~  319 (444)
                      +++.+=.....+   ..++......|.++.+..++-.|+-||..+-++.+   .+...+..  .+.++.|+.+....+
T Consensus       489 ~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~---~~~e~~~~hvp~~mq~lL~L~ne~E  560 (1010)
T KOG1991|consen  489 FSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQE---QADEKVSAHVPPIMQELLKLSNEVE  560 (1010)
T ss_pred             HHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch---hhhhhHhhhhhHHHHHHHHHHHhcc
Confidence            954433333333   35667777777744467888889999999888765   23233332  234455555555443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=85.99  E-value=14  Score=40.27  Aligned_cols=209  Identities=14%  Similarity=0.070  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcc-----cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-------------h
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLG-----SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-------------R  250 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~-----~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-------------~  250 (444)
                      .+.++.|+..|.|.      .|..+.     ....-..|+.+|+.  +++-..|+.++.-+.++++             -
T Consensus       788 ~dls~~al~~l~Wv------~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riL  859 (1030)
T KOG1967|consen  788 LDLSEIALTVLAWV------TKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRIL  859 (1030)
T ss_pred             cchhhHHHHHHHHH------HHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHH
Confidence            45566666666642      222221     11223455555544  2333345555555533332             3


Q ss_pred             hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHH
Q 038250          251 KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALS  328 (444)
Q Consensus       251 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~  328 (444)
                      +|+.+ - ..++|.|++..... ....+..-+.+|.++-.+-+     +..+..  ....|.|++.|+-.|..++-.++.
T Consensus       860 ykQRf-F-~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP-----~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~  931 (1030)
T KOG1967|consen  860 YKQRF-F-CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVP-----KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLR  931 (1030)
T ss_pred             HHHHH-H-HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCC-----HHhhccchhhHHHHHHHhcCCCccchhhhHhh
Confidence            45555 2 47899999998843 34567777888888887654     344433  467888999999889999888888


Q ss_pred             HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC---hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc
Q 038250          329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS---DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV  405 (444)
Q Consensus       329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~  405 (444)
                      +|.-+..-.+.-..- .-.-.+|.+..+=.+.+   ..+++.|+..|..|....|.    ..-.-.+..++..|...|..
T Consensus       932 ~i~~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~----~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen  932 TIPMLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT----KSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred             hhhHHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC----cccccccHHHHHHhhhccCc
Confidence            888766422221111 01234566655322222   46789999999999996654    12222256778888888876


Q ss_pred             CCChHHHHHHHHHH
Q 038250          406 GCADKTKEHVSELL  419 (444)
Q Consensus       406 ~~~~~~k~~a~~ll  419 (444)
                      . -..+|+.|+..-
T Consensus      1007 k-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 1007 K-KRLVRKEAVDTR 1019 (1030)
T ss_pred             H-HHHHHHHHHHHh
Confidence            6 667788776643

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=85.89  E-value=7.4  Score=42.21  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      ...+|.|++.........|.+=..+|.++.+..|. ...+-.....+|.|++.|.-+ +..++-.++.+|.-+..-..  
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~--  941 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESE--  941 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhcc--
Confidence            56789999988866777888888889888665553 222223345778888888877 78888888888886654432  


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccc---cchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQ---RSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI  371 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~---~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  371 (444)
                       .....-++ -.||.++.+=++.+   ..+++.|+..|..|.. .+..+-.- ....++..|.+.|......+++.|+.+
T Consensus       942 -tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~-fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  942 -TLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS-FRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             -ccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc-ccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence             12222222 36777777766654   4678999999999998 44443333 344566777776655555567777654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=85.79  E-value=8.6  Score=42.40  Aligned_cols=195  Identities=13%  Similarity=0.077  Sum_probs=123.1

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      +++..|.+.|++.+..++..||+-++.+++..+  .+..   ..+|...+.++.-..++..-..|+-+|..|+...-   
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La---d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl---  412 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA---DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL---  412 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH---HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC---
Confidence            567777777778889999999999999977666  3322   35677777766655346777788999999987753   


Q ss_pred             chhHHHHhcCcHHHHHHHhhc--------cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH-----hhcChh
Q 038250          297 KPIQKFVDMGLVSLLLEMLVD--------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI-----LRVSDL  363 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll-----~~~~~~  363 (444)
                       ......+ .++|.+++-|.-        ....+++.|+-+++.++...+-. .+   .+.+..|...|     ....-.
T Consensus       413 -Llps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l---~p~l~~L~s~LL~~AlFDrevn  486 (1133)
T KOG1943|consen  413 -LLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DL---KPVLQSLASALLIVALFDREVN  486 (1133)
T ss_pred             -cchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-hh---hHHHHHHHHHHHHHHhcCchhh
Confidence             3332222 378888877752        25679999999999998743322 11   11222222222     223445


Q ss_pred             HHHHHHHHHHHHccccccc----------------hHH----HH--HHHHhhChHHHHHH-HHhcC---CChHHHHHHHH
Q 038250          364 ATEFAVSILWKLCKNEERE----------------EKT----AF--AEALQVGAFQKLLL-LLQVG---CADKTKEHVSE  417 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~----------------~~~----~~--~~~~~~g~l~~Ll~-ll~~~---~~~~~k~~a~~  417 (444)
                      .+..|.+||.......++.                +..    ..  .-+.-.|...++++ ++...   =+..+|+-|+.
T Consensus       487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~  566 (1133)
T KOG1943|consen  487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY  566 (1133)
T ss_pred             HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence            6777777777765542221                000    01  11223677777777 44442   25889999999


Q ss_pred             HHHHHHhh
Q 038250          418 LLKLLNPH  425 (444)
Q Consensus       418 ll~~l~~~  425 (444)
                      .|..++..
T Consensus       567 aL~~Ls~~  574 (1133)
T KOG1943|consen  567 ALHKLSLT  574 (1133)
T ss_pred             HHHHHHHh
Confidence            77777654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.77  E-value=37  Score=36.09  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      +..|+...+.+|. .+......+..-+-.+....+..-|....+.+|.+|+.+|..+ .+++. -+    ...+...++.
T Consensus        98 dk~VRfrvlqila-~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl-Q~d~~-de----e~~v~n~l~~  170 (892)
T KOG2025|consen   98 DKKVRFRVLQILA-LLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL-QGDPK-DE----ECPVVNLLKD  170 (892)
T ss_pred             chhHHHHHHHHHH-HHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH-hcCCC-CC----cccHHHHHHH
Confidence            6889999999998 4443211122222234455666666667789999999999999 44332 11    1244567888


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          268 LIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      +++.+.++++++.|   |.|++.++.
T Consensus       171 liqnDpS~EVRRaa---LsnI~vdns  193 (892)
T KOG2025|consen  171 LIQNDPSDEVRRAA---LSNISVDNS  193 (892)
T ss_pred             HHhcCCcHHHHHHH---HHhhccCcc
Confidence            88877678888855   567776664

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=85.55  E-value=43  Score=33.79  Aligned_cols=186  Identities=15%  Similarity=0.111  Sum_probs=103.4

Q ss_pred             HHHHHHHHhc--C--CHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          219 MRCMVWFLKS--G--DLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       219 i~~Lv~lL~~--~--~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ++.+.++|..  +  ..+-++.|..-|..+.... -...+.- - ..++..+++.|.+..+...++-|++.|..++.+..
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~  362 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-F-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP  362 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-H-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence            4444445532  2  3455666666555553322 2223322 1 24567888999885578899999999999998763


Q ss_pred             CCCchhHHHHh--cCcHHHHHHHhhccccchH-HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHH
Q 038250          294 ATEKPIQKFVD--MGLVSLLLEMLVDAQRSLC-EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVS  370 (444)
Q Consensus       294 ~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~  370 (444)
                            .++.+  .=+|..+++.-.+.+..+. ..+=.++..|+.+..-+.        |..+..++.+.++..--.++.
T Consensus       363 ------~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iK  428 (516)
T KOG2956|consen  363 ------ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIK  428 (516)
T ss_pred             ------HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHH
Confidence                  33333  2355555555555554443 333344445554333222        223444555544444444555


Q ss_pred             HHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH-HHHHHHhh
Q 038250          371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLNPH  425 (444)
Q Consensus       371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~~~  425 (444)
                      .+-.++..-.   .+..... =..+.|.+++.-.+. +..+|+.|+. |+.++.+-
T Consensus       429 m~Tkl~e~l~---~EeL~~l-l~diaP~~iqay~S~-SS~VRKtaVfCLVamv~~v  479 (516)
T KOG2956|consen  429 MLTKLFERLS---AEELLNL-LPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVNRV  479 (516)
T ss_pred             HHHHHHhhcC---HHHHHHh-hhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHHHH
Confidence            5555555321   1222221 256778888888887 6777777776 66666654

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.42  E-value=0.19  Score=46.40  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             ccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           36 HFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      +..|-||.+.-+|-|.++|||. -|..|-.+      ...||+||+-+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHH
Confidence            6799999999999999999993 56666332      23799998643

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.26  E-value=40  Score=37.16  Aligned_cols=115  Identities=11%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             CCcHHHHHHHHh------cC--CHHHHHHHHHHHHHHHhc---chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          216 ASSMRCMVWFLK------SG--DLSRRRNAVLVLREIVSS---DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       216 ~g~i~~Lv~lL~------~~--~~~~~~~A~~~L~~L~s~---~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      .|.++.+++.|.      ..  ++..++-|..++++|++.   ...++..+ . .=.++.+.-.++++ .--.+..|+|.
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E-~flv~hVfP~f~s~-~g~Lrarac~v  485 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-E-YFLVNHVFPEFQSP-YGYLRARACWV  485 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-H-HHHHHHhhHhhcCc-hhHHHHHHHHH
Confidence            477888888887      22  456667788888888532   22344444 2 22334444445555 45688999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChh
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDY  338 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~  338 (444)
                      +...+.-+=     +..-.-..++......|. +.+-.++-.|+-+|.-+-.+.+
T Consensus       486 l~~~~~~df-----~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  486 LSQFSSIDF-----KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE  535 (1010)
T ss_pred             HHHHHhccC-----CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence            999985432     222222346777888887 6677888888888887766444

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.10  E-value=7  Score=32.98  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250          349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRAR  428 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~  428 (444)
                      ++..|.+-|..+++.++-.|+.+|-.+..+.+   .....++...+.+..|+.++.....+.+|+++..++..-+..-.+
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG---THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            45566677777889999999999999888643   456666778999999999998766789999999988887765543


Q ss_pred             C
Q 038250          429 L  429 (444)
Q Consensus       429 ~  429 (444)
                      .
T Consensus       119 ~  119 (142)
T cd03569         119 K  119 (142)
T ss_pred             C
Confidence            3

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.98  E-value=50  Score=35.11  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=85.7

Q ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhh----------HHHhhcccccHHHHHHHhcC---CCChHHHHHH
Q 038250          219 MRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRK----------VNVLLDIEGAIEPLFKLIKE---PICPTATKAS  281 (444)
Q Consensus       219 i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~----------~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~~a  281 (444)
                      +..+..++++    .+..++..|..+++.|....-..          ...+  ....++.|...+..   ..+...+..+
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI--IEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS----GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh--HHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            5555555543    35678888888888874221111          1122  24577777777762   2256778889


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      +.+|.|+....              .++.|..++...   +..++-.|+.+|..++....  ..+      .+.|..++.
T Consensus       511 LkaLgN~g~~~--------------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--~~v------~~~l~~I~~  568 (618)
T PF01347_consen  511 LKALGNLGHPE--------------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--EKV------REILLPIFM  568 (618)
T ss_dssp             HHHHHHHT-GG--------------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--HHH------HHHHHHHHH
T ss_pred             HHHhhccCCch--------------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--HHH------HHHHHHHhc
Confidence            99999996432              577777777655   56678888888887754221  122      345666666


Q ss_pred             hc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHH
Q 038250          359 RV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKE  413 (444)
Q Consensus       359 ~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~  413 (444)
                      +.  +..++-.|..+|..   ..|+           ...+..+...+..+.+..+..
T Consensus       569 n~~e~~EvRiaA~~~lm~---~~P~-----------~~~l~~i~~~l~~E~~~QV~s  611 (618)
T PF01347_consen  569 NTTEDPEVRIAAYLILMR---CNPS-----------PSVLQRIAQSLWNEPSNQVAS  611 (618)
T ss_dssp             -TTS-HHHHHHHHHHHHH---T--------------HHHHHHHHHHHTT-S-HHHHH
T ss_pred             CCCCChhHHHHHHHHHHh---cCCC-----------HHHHHHHHHHHhhCchHHHHH
Confidence            54  33445445443333   3232           344566667776664444443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.24  E-value=0.51  Score=42.79  Aligned_cols=50  Identities=10%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             cccccccccC-cCce-ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           37 FRCPISLDLM-KDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        37 ~~Cpic~~~~-~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      ..|.-|...- .+|. ++.|+|.||..|...-.    ...||.|++.+....+..|
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceeeeeecccc
Confidence            3566555443 3443 45899999999965422    2389999998765555444

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=83.97  E-value=23  Score=38.81  Aligned_cols=177  Identities=15%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhh-cccccccchHHHHHHHHHHHhhcCCChhh-hhhccc
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF-SKTCLDENVSVLEEILSTLTLLFPLAGEG-LTYLGS  215 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~~~~~a~~~L~~~l~~~~~~-~~~i~~  215 (444)
                      .+...+.+|+..+.....+..    ...+.|....+.-++... .    |.+..+...|+.+|..+....... +...  
T Consensus       265 ~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~k----DaN~~v~~~aa~~l~~ia~~lr~~~~~~~--  334 (815)
T KOG1820|consen  265 KKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLK----DANINVVMLAAQILELIAKKLRPLFRKYA--  334 (815)
T ss_pred             cchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhcc----CcchhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence            478899999999999886533    222233333333333211 2    225666666766666333322221 2111  


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      .+..+.|..-+......+++.+..++-.+. .      .. .....++.+...++++ +|..+......+........  
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~-n------s~-~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~--  403 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAIL-N------ST-PLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLG--  403 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHH-h------cc-cHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcC--
Confidence            356788888777777777777777766663 2      11 1234567788888888 78887775555554433322  


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      +.....-.-.+.++.++....+.+.+++..|..++..+-.
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            1123333334577888888888899999999888887654

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=83.94  E-value=11  Score=35.38  Aligned_cols=167  Identities=12%  Similarity=0.035  Sum_probs=95.5

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhhcC--chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc-C
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVDNG--AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS-A  216 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~-~  216 (444)
                      .+.+.=++.-+|-++.+.+ .-..+...+  ....+..++....++   ..+..+--+++++. |+-.++..+..+.. .
T Consensus        77 ~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~-NlF~~~~~~~~~~~~~  151 (268)
T PF08324_consen   77 PESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLA-NLFSHPPGRQLLLSHF  151 (268)
T ss_dssp             CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHH-HHTTSCCCHHHHHCTH
T ss_pred             CccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHH-HhhCCCccHHHHHhcc
Confidence            3445566666666665433 333343332  245555555432211   24667778999999 77777777776654 3


Q ss_pred             C-cHHHHHHHHhcC----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhc
Q 038250          217 S-SMRCMVWFLKSG----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTIT  290 (444)
Q Consensus       217 g-~i~~Lv~lL~~~----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~  290 (444)
                      + .+-..+..+...    +..++..++.++.|++...-..+..--.....+..+++.+ ....++++.-.++.||.+|..
T Consensus       152 ~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~  231 (268)
T PF08324_consen  152 DSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS  231 (268)
T ss_dssp             HTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence            3 344444433333    6788899999999995332222210000113466666633 333478999999999999997


Q ss_pred             CCCCCCchhHHHHh-cCcHHHHHHHh
Q 038250          291 SASATEKPIQKFVD-MGLVSLLLEML  315 (444)
Q Consensus       291 ~~~~~~~~~~~i~~-~g~v~~Lv~lL  315 (444)
                      .+.    ......+ .|+-..+-..-
T Consensus       232 ~~~----~~~~~~~~l~~~~~~~~~~  253 (268)
T PF08324_consen  232 SSD----SAKQLAKSLDVKSVLSKKA  253 (268)
T ss_dssp             CSH----HHHHHCCCCTHHHHHHHHH
T ss_pred             cCh----hHHHHHHHcChHHHHHHHH
Confidence            664    5555555 34444444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=83.89  E-value=1.4  Score=32.39  Aligned_cols=46  Identities=20%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -.|.||.+-.-     +|...  .|+.-.|+.|.+==. ..++..||.|+..+.
T Consensus        10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-keg~q~CpqCkt~yk   62 (80)
T PF14569_consen   10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-KEGNQVCPQCKTRYK   62 (80)
T ss_dssp             -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-HTS-SB-TTT--B--
T ss_pred             cccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-hcCcccccccCCCcc
Confidence            48999988654     45444  689999999987544 578899999986654

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=83.87  E-value=8.3  Score=32.59  Aligned_cols=78  Identities=18%  Similarity=0.089  Sum_probs=61.8

Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250          349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRAR  428 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~  428 (444)
                      ++..|.+-|.+.++.++-.|+.+|-.+..+.+   .....++.....+..|+.++.......++++...+++..+....+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            34566666777789999999999999998754   456667778999999999998855889999999988877765543


Q ss_pred             C
Q 038250          429 L  429 (444)
Q Consensus       429 ~  429 (444)
                      .
T Consensus       115 ~  115 (144)
T cd03568         115 D  115 (144)
T ss_pred             C
Confidence            3

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PHA03096 p28-like protein; Provisional

Probab=83.79  E-value=0.74  Score=43.53  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cccccccccCcCc--------eecCCcchhcHHHHHHHHHhcC-CCCCCCCC
Q 038250           37 FRCPISLDLMKDP--------VTLSTGITYDRENIEKWIHEDG-NITCPVTN   79 (444)
Q Consensus        37 ~~Cpic~~~~~~P--------v~~~cg~~~c~~ci~~~~~~~~-~~~CP~c~   79 (444)
                      -.|.||++....-        +...|.|.||..|+..|..+.. ..+||.|+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            4799999875531        2337999999999999985432 24566554

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.72  E-value=15  Score=34.94  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +...+..|.+.+++.+..+.-.|..|+..+++..... - .-+|..+++-+++. ...+-+.|+.++..|.+.-.     
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~-L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln-----  161 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPM-L-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLN-----  161 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHH-H-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH-----
Confidence            5556677888889999999999998866665544433 1 46788888888887 57789999999999987643     


Q ss_pred             hHHHHhcCcHHHHHHHhh-c---cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHH
Q 038250          299 IQKFVDMGLVSLLLEMLV-D---AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVS  370 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~-~---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~  370 (444)
                       ..+.+  ..+.++..|. .   .+.-+++.|-.+|..+..+-.-..       +++.|+..++..+++++..++.
T Consensus       162 -~~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~  227 (334)
T KOG2933|consen  162 -NSIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAAL  227 (334)
T ss_pred             -HHHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhc
Confidence             22222  4555554443 2   244578999999998887433222       3445555566677777766553

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=83.71  E-value=1  Score=42.95  Aligned_cols=65  Identities=14%  Similarity=0.253  Sum_probs=47.1

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ...+-+-||+|.+.+..|+.= .-||.-|..|-.+     -...||.|+.++..   ....++...++......
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~---~R~~amEkV~e~~~vpC  109 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN---IRCRAMEKVAEAVLVPC  109 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCcccccccc---HHHHHHHHHHHhceecc
Confidence            345558999999999999753 4589999999654     23469999988862   25677777776654443

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.65  E-value=25  Score=39.08  Aligned_cols=257  Identities=13%  Similarity=0.084  Sum_probs=139.7

Q ss_pred             HHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH
Q 038250          147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL  226 (444)
Q Consensus       147 l~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL  226 (444)
                      -..|-.+.+.+.+|...+.++.|+..++.++-+         .+-+...++++.-++..++..    ++..-+-.+|..|
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin---------dehRSslLrivscLitvdpkq----vhhqelmalVdtL  729 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN---------DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTL  729 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec---------hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHH
Confidence            456777889999999999999998888887721         122333333333222333321    1224466788888


Q ss_pred             hcCC------------HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC---------CCCh----HHHHHH
Q 038250          227 KSGD------------LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE---------PICP----TATKAS  281 (444)
Q Consensus       227 ~~~~------------~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~---------~~~~----~~~~~a  281 (444)
                      +++-            ......-..+++.+...+-..+..++. .|+...|..+|-.         ..+.    +..+..
T Consensus       730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkil  808 (2799)
T KOG1788|consen  730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL  808 (2799)
T ss_pred             HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence            7742            123444556677774445566777755 5777777666531         1121    122222


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc--------------------------cccchHHHHHHHHHHhcC
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--------------------------AQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~--------------------------~~~~~~~~a~~~L~~L~~  335 (444)
                      .+ +..++...+  ..|+..+-..=--+....+|+.                          +.-.--..|+..+..+-.
T Consensus       809 Fr-lfTlavcen--asNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeled  885 (2799)
T KOG1788|consen  809 FR-LFTLAVCEN--ASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELED  885 (2799)
T ss_pred             HH-HHHHHHhhc--chhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccc
Confidence            22 223333221  1244433221111222222221                          111111122222222211


Q ss_pred             -----------ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh
Q 038250          336 -----------SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ  404 (444)
Q Consensus       336 -----------~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~  404 (444)
                                 ....++.+ ..+|++..++..+.-..+..+-.-+..|..+++-+|.    .....-..|.++.|+++..
T Consensus       886 nifavntPsGqfnpdk~~i-ynagavRvlirslLlnypK~qlefl~lleSlaRaspf----naelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  886 NIFAVNTPSGQFNPDKQKI-YNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPF----NAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             ceeeeccCCCCcCchHhhh-cccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC----chhhhhcccHHHHHHHHhh
Confidence                       01245566 7889999999998888888888888999999985543    3333335799988888543


Q ss_pred             ---cCCChHHHHHHHHHHHHHHhhc
Q 038250          405 ---VGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       405 ---~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                         +| +.-.--.|-+++.++.-++
T Consensus       961 pflsg-sspfLshalkIvemLgayr  984 (2799)
T KOG1788|consen  961 PFLSG-SSPFLSHALKIVEMLGAYR  984 (2799)
T ss_pred             hhhcC-CchHhhccHHHHHHHhhcc
Confidence               34 3344456666777776544

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.64  E-value=1.2  Score=44.37  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             cccccccc-ccCcCce---ecCCcchhcHHHHHHHHHhc----CCCCCCC--CCcccCCC---CCCccHHHHHHHHHHHH
Q 038250           36 HFRCPISL-DLMKDPV---TLSTGITYDRENIEKWIHED----GNITCPV--TNRVLTSF---EPIPNHTIRRMIQDWCV  102 (444)
Q Consensus        36 ~~~Cpic~-~~~~~Pv---~~~cg~~~c~~ci~~~~~~~----~~~~CP~--c~~~~~~~---~l~~n~~l~~~i~~~~~  102 (444)
                      ...|.||. +.+...-   +..|+|-||..|+.+++..+    ....||.  |...+...   .+.++ .++.+.+....
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~  224 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK  224 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence            46899999 3333212   34699999999999998422    2357877  55555433   23333 44455444444


Q ss_pred             hc
Q 038250          103 EN  104 (444)
Q Consensus       103 ~~  104 (444)
                      +.
T Consensus       225 e~  226 (384)
T KOG1812|consen  225 EE  226 (384)
T ss_pred             HH
Confidence            33

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.50  E-value=36  Score=35.88  Aligned_cols=173  Identities=10%  Similarity=-0.044  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHh---hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIV---DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA  216 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~---~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~  216 (444)
                      .+.+.=|+..||.+.++...+-..+-   ....+..++..+.    .    ++..+..++++|. |+-.++-.+..+...
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~----~----~~an~ll~vR~L~-N~f~~~~g~~~~~s~  628 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN----A----DPANQLLVVRCLA-NLFSNPAGRELFMSR  628 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc----c----chhHHHHHHHHHH-HhccCHHHHHHHHHH
Confidence            44566778888887776554433222   1224444444442    1    4667888999999 777777777766532


Q ss_pred             --CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc----CCCChHHHHHHHHHHHHHhc
Q 038250          217 --SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK----EPICPTATKASLVVVYRTIT  290 (444)
Q Consensus       217 --g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~~a~~aL~~L~~  290 (444)
                        -.+..++..=...+..++...+....|++-.--.....    .|+.+-|...+.    .-.+.++.-.++.||.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence              22222222222234566666555566663111111111    244444444433    22234566778889999999


Q ss_pred             CCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHH
Q 038250          291 SASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSV  329 (444)
Q Consensus       291 ~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~  329 (444)
                      .+.    ...++...=-|..+++-+++- +....+..+..
T Consensus       705 ~~~----~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~  740 (745)
T KOG0301|consen  705 VDA----SVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD  740 (745)
T ss_pred             ccH----HHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence            886    778887766788888888643 44444444433

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=82.70  E-value=0.85  Score=42.66  Aligned_cols=42  Identities=31%  Similarity=0.629  Sum_probs=34.1

Q ss_pred             cccccccccCc----CceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250           37 FRCPISLDLMK----DPVTLSTGITYDRENIEKWIHEDGNITCPVTNR   80 (444)
Q Consensus        37 ~~Cpic~~~~~----~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~   80 (444)
                      +.||||.+.+.    +|..++|||+.-..|++... -.+ ++||.|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~-~~~-y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMI-CEG-YTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHh-ccC-CCCCcccc
Confidence            56999998865    46667999998889998877 344 99999976

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.18  E-value=21  Score=37.80  Aligned_cols=112  Identities=14%  Similarity=0.082  Sum_probs=69.1

Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC-----CCChHHHHHHHhhcChhHHHHHHHHHHHHccccccc
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN-----SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE  382 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-----~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~  382 (444)
                      ...++++|.+.+-.++-..+.+++|++.+-....+++.+     +..+..+++-+...++-.+..|+.++..++..+.- 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-  379 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-  379 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence            456777887776667766677777776532222223110     12344444545556888999999999998875321 


Q ss_pred             hHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH-HHHhhc
Q 038250          383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK-LLNPHR  426 (444)
Q Consensus       383 ~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~-~l~~~~  426 (444)
                      ....+     ..++...+.-++.. +..+|++|..++. ++-+|.
T Consensus       380 ~~~~r-----~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         380 TVGRR-----HEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             ccchH-----HHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            12222     34555666677778 8899999998654 444443

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=82.10  E-value=1.1  Score=30.68  Aligned_cols=29  Identities=28%  Similarity=0.598  Sum_probs=24.2

Q ss_pred             cccccccccC--cCceec--CCcchhcHHHHHH
Q 038250           37 FRCPISLDLM--KDPVTL--STGITYDRENIEK   65 (444)
Q Consensus        37 ~~Cpic~~~~--~~Pv~~--~cg~~~c~~ci~~   65 (444)
                      -.|++|.+.|  .+.++.  .||-.|.|.|..+
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            4899999999  677776  5999999999543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=82.00  E-value=1.9  Score=36.49  Aligned_cols=47  Identities=26%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             ccccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      +..|=||.+--. +-.-+|..     ...+.|+++|+...+...|+.|+.++.
T Consensus         8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            457889988754 33345543     347999999996667789999998775

>PHA02862 5L protein; Provisional

Probab=81.62  E-value=1.5  Score=36.48  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             ccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           38 RCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        38 ~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      .|=||.+.-.+.+ -+|..     -..+.|+++|+...++..||.|+.++.-
T Consensus         4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            6788888765553 35432     3578999999966677899999988753

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=81.54  E-value=12  Score=31.22  Aligned_cols=76  Identities=14%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhccC
Q 038250          350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK-TKEHVSELLKLLNPHRAR  428 (444)
Q Consensus       350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~-~k~~a~~ll~~l~~~~~~  428 (444)
                      +..|-+-|.+.++.++-.|+.+|-.+..+.+   .....++...+++..|..++....+.. +++++..++..-...-.+
T Consensus        39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg---~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       39 VRLLKKRLNNKNPHVALLALTLLDACVKNCG---SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            4556666777899999999999999988743   456667778999999999888875544 899988877777665543

Unpublished observations. Domain of unknown function.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=81.49  E-value=42  Score=30.55  Aligned_cols=194  Identities=13%  Similarity=0.109  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHh-h---cccccccc-hHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250          143 CRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFET-F---SKTCLDEN-VSVLEEILSTLTLLFPLAGEGLTYLGSA  216 (444)
Q Consensus       143 ~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~-~---~~~~~~~~-~~~~~~a~~~L~~~l~~~~~~~~~i~~~  216 (444)
                      +++|+.+|.+--+..+.-.-.+-.. |+.-.|++-.-+ +   +.+..++. ..=...|+.+|. .+..+++.|..+.++
T Consensus        62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQ-claShPetk~~Fl~A  140 (315)
T COG5209          62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQ-CLASHPETKKVFLDA  140 (315)
T ss_pred             HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHH-HHhcCcchheeeeec
Confidence            3448888877666666554444444 444444432211 1   11111111 223457778787 888899999988887


Q ss_pred             CcHHHHHHHHh---cC--CHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250          217 SSMRCMVWFLK---SG--DLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT  290 (444)
Q Consensus       217 g~i~~Lv~lL~---~~--~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  290 (444)
                      ..--.|-.+|.   ++  ....+..+..+|+.|...++. .-..+ ....++|.++++++.+ ++-.+.-|+..+..+-.
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fL-ltTeivPLcLrIme~g-SElSktvaifI~qkil~  218 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFL-LTTEIVPLCLRIMELG-SELSKTVAIFIFQKILG  218 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHH-HhhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhc
Confidence            75444444443   22  366788899999999765543 33444 5578999999999988 45555555555554444


Q ss_pred             CCCCCCchhHHHH----hcCcH----HHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250          291 SASATEKPIQKFV----DMGLV----SLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDA  343 (444)
Q Consensus       291 ~~~~~~~~~~~i~----~~g~v----~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i  343 (444)
                      ++.    .-+.+.    +=-+|    ..++.- .+.+...+.+.++..-..|+..++.|+.+
T Consensus       219 dDv----GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         219 DDV----GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             cch----hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            432    222221    11222    223322 23456778888888888888888877765

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=80.94  E-value=21  Score=37.98  Aligned_cols=99  Identities=11%  Similarity=0.103  Sum_probs=69.3

Q ss_pred             cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCCh
Q 038250          259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~  337 (444)
                      .++|..|++.--++.+.+++++|.-+|..++..+.            ..++..|++|++. ++.++-.++.+|..-|...
T Consensus       553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt  620 (929)
T KOG2062|consen  553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGT  620 (929)
T ss_pred             hhhHHHhhcccccccchHHHHHHHHHheeeEecCh------------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence            45677788774344478899999999998877664            2467778888754 8889999999999888766


Q ss_pred             hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250          338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC  376 (444)
Q Consensus       338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  376 (444)
                      -.+..+    ..+++|++   ....-+++.|+-++..+.
T Consensus       621 G~~eAi----~lLepl~~---D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  621 GLKEAI----NLLEPLTS---DPVDFVRQGALIALAMIM  652 (929)
T ss_pred             CcHHHH----HHHhhhhc---ChHHHHHHHHHHHHHHHH
Confidence            666666    23333332   334557777777776643

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=80.91  E-value=10  Score=31.80  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=59.2

Q ss_pred             hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH---HHHHHHHHHHHHHhhc
Q 038250          350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK---TKEHVSELLKLLNPHR  426 (444)
Q Consensus       350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~---~k~~a~~ll~~l~~~~  426 (444)
                      +..|.+-|...++.++..|+.+|-.+..+.+   .....++.....+..|..++.......   +|+++..++.......
T Consensus        44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   44 ARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4566677777899999999999999998743   456666668889999999888765555   8999988888777655


Q ss_pred             c
Q 038250          427 A  427 (444)
Q Consensus       427 ~  427 (444)
                      .
T Consensus       121 ~  121 (140)
T PF00790_consen  121 K  121 (140)
T ss_dssp             T
T ss_pred             C
Confidence            3

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=80.78  E-value=7.2  Score=30.17  Aligned_cols=67  Identities=21%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      ...+..+.++ .+.++..++..|+.|.....     ...+-..+++..++..|.+.++-+--+|+..|..|+.
T Consensus         6 ~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~   72 (92)
T PF10363_consen    6 QEALSDLNDP-LPPVRAHGLVLLRKLIESKS-----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD   72 (92)
T ss_pred             HHHHHHccCC-CcchHHHHHHHHHHHHHcCC-----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            3445566777 68899999999999998752     2223335678888888999999999999999999986

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=80.76  E-value=65  Score=35.10  Aligned_cols=250  Identities=16%  Similarity=0.069  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH
Q 038250          142 GCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR  220 (444)
Q Consensus       142 ~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~  220 (444)
                      ....+......++.. +...+..+...-.+|.+-.+..+.       +..++...+..........+  +..- -.-.+|
T Consensus       371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-------~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp  440 (759)
T KOG0211|consen  371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-------ALHVRSALASVITGLSPILP--KERT-ISELLP  440 (759)
T ss_pred             hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------cchHHHHHhccccccCccCC--cCcC-ccccCh
Confidence            333344444455433 223345566666667766666321       34455444443331111111  1111 134467


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250          221 CMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI  299 (444)
Q Consensus       221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  299 (444)
                      .++..++...++++.+-.+.+..+-...+ .....+  ....+|.++.+-... ...++.+..+.+..++...      -
T Consensus       441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~--s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~------~  511 (759)
T KOG0211|consen  441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV--SNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQL------G  511 (759)
T ss_pred             hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh--hhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhh------h
Confidence            77777777888998888876655522222 223333  356788888887776 6778888888888887654      2


Q ss_pred             HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHH---HHHHHHHHHHc
Q 038250          300 QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLAT---EFAVSILWKLC  376 (444)
Q Consensus       300 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~a~~~L~~L~  376 (444)
                      ..+.+....+.+..-|.+..-.++++|+..|..++.--. ...-  ..-.++.++.....++-..+   -.++..|..+.
T Consensus       512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~  588 (759)
T KOG0211|consen  512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL  588 (759)
T ss_pred             hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence            344443344444444445556788888888888775221 1111  11234555554433222222   33333333333


Q ss_pred             cccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          377 KNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       377 ~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .          .++...-.++.+..+.... .+.+|-+++..|..+.+
T Consensus       589 g----------~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  589 G----------QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILK  625 (759)
T ss_pred             c----------cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence            3          2223345666666666555 77777777776666554

>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]

Probab=80.55  E-value=0.92  Score=40.08  Aligned_cols=43  Identities=21%  Similarity=0.412  Sum_probs=36.0

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRV   81 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~   81 (444)
                      ..|.+|..+...-+.. +||-.|.+.|++.|+  +....||.|+--
T Consensus       182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~--q~~~~cphc~d~  225 (235)
T KOG4718|consen  182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYL--QRRDICPHCGDL  225 (235)
T ss_pred             HHHhHhHHHhheeeccCcccchhhhHHHHHHh--cccCcCCchhcc
Confidence            4899999999988776 688889999999999  336789999643

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.48  E-value=73  Score=35.72  Aligned_cols=234  Identities=16%  Similarity=0.172  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHhhccc----CChhH----HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc---c-cc
Q 038250          121 SVEVFEINCNITTACKS----EDQAG----CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL---D-EN  188 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~----~~~~~----~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~---~-~~  188 (444)
                      -+.+-.++..|.+..-.    +.-+.    ...-+.++++...-+-..+..+.++||...|...|-.+.. .+   + .|
T Consensus       719 hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqg-ftelhdesD  797 (2799)
T KOG1788|consen  719 HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQG-FTELHDESD  797 (2799)
T ss_pred             HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhcc-chhcCCchh
Confidence            35566777777763211    11112    2233455666665566678899999999999888854321 10   0 12


Q ss_pred             hHHHH----HHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250          189 VSVLE----EILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGD---LSRRRNAVLVLREIVSSDHRKVNVLLDIEGA  261 (444)
Q Consensus       189 ~~~~~----~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~  261 (444)
                      .-+.-    ...+.....++.++.|+..+...-.-..+..+|+...   .+...+....|..+                 
T Consensus       798 lcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllEl-----------------  860 (2799)
T KOG1788|consen  798 LCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLEL-----------------  860 (2799)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHH-----------------
Confidence            21211    2222222233456667765543333444445543221   11111111111111                 


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhc---------CCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHH
Q 038250          262 IEPLFKLIKEPICPTATKASLVVVYRTIT---------SASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDG  332 (444)
Q Consensus       262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~---------~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  332 (444)
                         -.+.+-.+ ....-..|+..+..+-.         +..  ...+..|..+|++..|+..+-...+.++-.-+.+|..
T Consensus       861 ---alevlvpp-fLtSEsaAcaeVfelednifavntPsGqf--npdk~~iynagavRvlirslLlnypK~qlefl~lleS  934 (2799)
T KOG1788|consen  861 ---ALEVLVPP-FLTSESAACAEVFELEDNIFAVNTPSGQF--NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLES  934 (2799)
T ss_pred             ---HHHhhCCc-hhhhhHHHHHHHhhcccceeeeccCCCCc--CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHH
Confidence               11112112 11122223333333311         111  1247788999999999999999999999999999999


Q ss_pred             hcCChhhHHHHhcCCCChHHHHHHHh---hcChhHHHHHHHHHHHHccc
Q 038250          333 LCSSDYGRGDAYNNSLIFPVIVKKIL---RVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       333 L~~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~~L~~~  378 (444)
                      ++..+..........|+++.|++++.   +++...-.++.+++..|+..
T Consensus       935 laRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay  983 (2799)
T KOG1788|consen  935 LARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY  983 (2799)
T ss_pred             HhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence            99866555555478899999999875   34555666777777777654

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.38  E-value=1.9  Score=31.04  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHH
Q 038250           54 TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI   93 (444)
Q Consensus        54 cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l   93 (444)
                      =.+|||..|.+..+    ...||-|+-.+..+...|-..|
T Consensus        27 fEcTFCadCae~~l----~g~CPnCGGelv~RP~RPaa~L   62 (84)
T COG3813          27 FECTFCADCAENRL----HGLCPNCGGELVARPIRPAAKL   62 (84)
T ss_pred             EeeehhHhHHHHhh----cCcCCCCCchhhcCcCChHHHH
Confidence            35799999998766    4579999988887777775433

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=80.29  E-value=70  Score=32.37  Aligned_cols=187  Identities=11%  Similarity=0.051  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      ..+..++..++.+   +..+.+..|+..|..+..++...-+.=.-.-.+-.+++.|+.   .   ++......|+++|..
T Consensus       286 ~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d---~---~~~~~k~laLrvL~~  356 (516)
T KOG2956|consen  286 ALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD---S---EDEIIKKLALRVLRE  356 (516)
T ss_pred             HHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc---c---hhhHHHHHHHHHHHH
Confidence            3445555555554   355678889998988877764332221112234455666632   1   257788999999997


Q ss_pred             hcCCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHH-HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          202 LFPLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVL-VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       202 ~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~-~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      +|...+.   .+.+  .-+|..+++.-...++++...|.. ++.-+++.++..+-..     +.|.++.    . +.+.-
T Consensus       357 ml~~Q~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-----i~~~Ilt----~-D~~~~  423 (516)
T KOG2956|consen  357 MLTNQPA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-----ISPLILT----A-DEPRA  423 (516)
T ss_pred             HHHhchH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-----HhhHHhc----C-cchHH
Confidence            6655442   1211  123444444444445555544444 4555555555433222     1233222    3 33333


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      -.++..+..|+..-.     +..+..  ....|.+++--.+.+..+++.|+-.|-.+..
T Consensus       424 ~~~iKm~Tkl~e~l~-----~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  424 VAVIKMLTKLFERLS-----AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHHHHHHHhhcC-----HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            344555556655432     222222  3577888888877788888888888777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	444
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		1e-14
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-06
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		5e-06
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		9e-06
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-05
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P +FRCPISL+LMKDPV +STG TY+R +I+KW+ + G+ TCP +   L      PN+ +
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 94  RRMIQDWCVENRSYGIE 110
           + +I  WC  N   GIE
Sbjct: 65  KSLIALWCESN---GIE 78

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P++    IS +LM++P    +GITYDR++IE+ +   G+   PVT   LT  + IPN  +
Sbjct: 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-PVTRSPLTQEQLIPNLAM 264
Query: 94  RRMIQDWCVEN 104
           + +I  +  EN
Sbjct: 265 KEVIDAFISEN 275

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 27  GEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86
           G  +   P++    IS +LM +P    +GITYDR++IE+ +   G+   PVT   LT  +
Sbjct: 4   GSKKREIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFD-PVTRSPLTQDQ 62
Query: 87  PIPNHTIRRMIQDWCVEN 104
            IPN  ++ +I  +  EN
Sbjct: 63  LIPNLAMKEVIDAFIQEN 80

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P++    IS +LM++P    +GITYDR++IE+ +   G+   PVT   LT  + IPN  +
Sbjct: 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD-PVTRSPLTQDQLIPNLAM 162
Query: 94  RRMIQDWCVEN 104
           + +I  +  EN
Sbjct: 163 KEVIDAFIQEN 173

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P++    IS +LM++P    +GITYDR++IE+ +   G+   PVT   LT  + IPN  +
Sbjct: 3   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-PVTRSPLTQEQLIPNLAM 61
Query: 94  RRMIQDWCVEN 104
           + +I  +  EN
Sbjct: 62  KEVIDAFISEN 72

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 157 SDRNKR--CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG 214
           SD N++   ++D GA+  L +   +        N  +L+E L  L+ +     E +  + 
Sbjct: 41  SDGNEQIQAVIDAGALPALVQLLSS-------PNEQILQEALWALSNIASGGNEQIQAVI 93
Query: 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPIC 274
            A ++  +V  L S +    + A+  L  I S  + ++  ++D  GA+  L +L+  P  
Sbjct: 94  DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNE 152
Query: 275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334
               +A    ++     AS   + IQ  +D G +  L+++L      + ++AL  L  + 
Sbjct: 153 QILQEA----LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208
Query: 335 S 335
           S
Sbjct: 209 S 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	3e-37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	2e-33
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	9e-32
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-30
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	6e-28
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-22
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	2e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-10
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	3e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-11
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	5e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	5e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  129 bits (328), Expect = 3e-37
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P +FRCPISL+LMKDPV +STG TY+R +I+KW+ + G+ TCP +   L      PN+ +
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 94  RRMIQDWCVENRSYGIE 110
           + +I  WC  N   GIE
Sbjct: 65  KSLIALWCESN---GIE 78

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  122 bits (308), Expect = 2e-33
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             +   P++    IS +LM++P    +GITYDR++IE+ +   G+   PVT   LT  + 
Sbjct: 98  RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQL 156

Query: 88  IPNHTIRRMIQDWCVEN 104
           IPN  ++ +I  +  EN
Sbjct: 157 IPNLAMKEVIDAFIQEN 173

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  115 bits (290), Expect = 9e-32
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 27  GEMELT-TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85
            E++ +  P+ FR P+   LM DPV L +G   DR  I + +      T P   ++LT  
Sbjct: 4   AEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP--TDPFNRQMLTES 61

Query: 86  EPIPNHTIRRMIQDWCVENRS 106
              P   ++  IQ W  E +S
Sbjct: 62  MLEPVPELKEQIQAWMREKQS 82

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  112 bits (283), Expect = 1e-30
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P+ FR P+   LM DPV L +G   DR  I + +    + T P   + LT     P   +
Sbjct: 27  PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL--LNSPTDPFNRQTLTESMLEPVPEL 84

Query: 94  RRMIQDWCVENRS 106
           +  IQ W  E ++
Sbjct: 85  KEQIQAWMREKQN 97

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  105 bits (264), Expect = 6e-28
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 34  PNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT 92
            + F  PI   LM DPV L +  +T DR  I + +  D   T P     LT  +  PN  
Sbjct: 20  CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ--TDPFNRSPLTMDQIRPNTE 77

Query: 93  IRRMIQDWCVENRS 106
           ++  IQ W  E + 
Sbjct: 78  LKEKIQRWLAERKQ 91

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 98.7 bits (245), Expect = 3e-22
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 15  RAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNI 73
           +A +++   E         P+ F  P+   +MKDPV L ++ +  DR  I+  +    + 
Sbjct: 870 KAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL--LSDS 927

Query: 74  TCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRS 106
           T P     L   +  PN  +R+ I  +  + + 
Sbjct: 928 TDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 36  HFRCPISLDLMKDPVTLST-GITYDRENIEKWI----HEDGNITCPVT---NRVLTSFEP 87
            F CPI+ + MK PV     G TY+ + I + I           CP     +  +   + 
Sbjct: 7   GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66

Query: 88  IPNHTIRRMIQDWCVENR 105
           I +  +RR I++   +  
Sbjct: 67  IQDEALRRAIENHNKKRH 84

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 81.5 bits (201), Expect = 2e-17
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87
             +   P++    IS +LM++P    +GITYDR++IE+ +   G+   PVT   LT  + 
Sbjct: 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FNPVTRSPLTQEQL 258

Query: 88  IPNHTIRRMIQDWCVEN 104
           IPN  ++ +I  +  EN
Sbjct: 259 IPNLAMKEVIDAFISEN 275

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 20/268 (7%)

Query: 156 ESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS 215
                   I  +G +  L +   +          SVL   ++TL  L          +  
Sbjct: 89  HHREGLLAIFKSGGIPALVKMLGS-------PVDSVLFYAITTLHNLLLHQEGAKMAVRL 141

Query: 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP 275
           A  ++ MV  L   ++         L+ +   +     ++L   G  + L  +++     
Sbjct: 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYE 200

Query: 276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335
                +     R +   S         V+ G +  L   L D  + L +  L  L  L  
Sbjct: 201 KLLWTTS----RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

Query: 336 SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGA 395
           +   +        +   +V+ +          A  IL  L  N   + K    +    G 
Sbjct: 257 AATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQV---GG 309

Query: 396 FQKLLLLLQVGCA-DKTKEHVSELLKLL 422
            + L+  +      +   E     L+ L
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHL 337

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 28/201 (13%), Positives = 69/201 (34%), Gaps = 9/201 (4%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           +   L   D      A +++ ++   +  +  ++      +  + + ++        + +
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCT 80

Query: 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341
                 T+ + S   + +      G +  L++ML     S+   A++ L  L     G  
Sbjct: 81  A----GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 342 DAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401
            A   +     +V  + + +          L  L    + E K     +   G  Q L+ 
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILAS---GGPQALVN 192

Query: 402 LLQVGCADKTKEHVSELLKLL 422
           +++    +K     S +LK+L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVL 213

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 52/302 (17%), Positives = 96/302 (31%), Gaps = 24/302 (7%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
              +          ++     +  +K  I+ +G    L     T++   L    S + ++
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVL 255
           LS  +            +  A  M+ +   L        +N +  LR + S    K    
Sbjct: 213 LSVCS-------SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-SDAATKQ--- 261

Query: 256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315
             +EG +  L +L+        T A+ ++    +T  +   K       +G +  L+  +
Sbjct: 262 EGMEGLLGTLVQLLGSDDINVVTCAAGIL--SNLTCNNYKNK--MMVCQVGGIEALVRTV 317

Query: 316 VDA--QRSLCEKALSVLDGLCSSDYGRGDAYN---NSLIFPVIVKKILRVSDLATEFAVS 370
           + A  +  + E A+  L  L S       A N        PV+VK +   S      A  
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377

Query: 371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLE 430
            L +              E    GA  +L+ LL     D  +       +       R+E
Sbjct: 378 GLIRNLALCP-ANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433

Query: 431 CI 432
            I
Sbjct: 434 EI 435

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 33/243 (13%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 154 TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEE---ILSTLTLLFPLAGEGL 210
           T  + +NK  +   G +  L             +   + E     L  LT     A    
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAG-----DREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 211 TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270
             +     +  +V  L          A + L   ++        L + +GAI  L +L+ 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLV 407

Query: 271 EPICPTATKASLVVVYRTITSASATEKPIQK-----------------FVDMGLVSLLLE 313
                T  + S+    +        E+ ++                     +  + L ++
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467

Query: 314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLAT-EFAVSIL 372
           +L     ++   A  VL  L        +A         +  ++L   +     +A ++L
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLT-ELLHSRNEGVATYAAAVL 525

Query: 373 WKL 375
           +++
Sbjct: 526 FRM 528

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 35 NHFRCPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT 92
          +H  C IS  + + PV +  +   +++  +E+++ + G    P+TN  L+  E +    
Sbjct: 2  SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 16/245 (6%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL-DENVSVLEE 194
            S+D         K  +   + +   + ++D GA+  L +         L   N  +L+E
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ--------LLSSPNEQILQE 73

Query: 195 ILSTLTLLFPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVN 253
            L  L+ +    G      +  A ++  +V  L S +    + A+  L  I S  + ++ 
Sbjct: 74  ALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 254 VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLE 313
            ++D  GA+  L +L+  P      +A   +    I S     + IQ  +D G +  L++
Sbjct: 133 AVID-AGALPALVQLLSSPNEQILQEALWAL--SNIASGG--NEQIQAVIDAGALPALVQ 187

Query: 314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILW 373
           +L      + ++AL  L  + S    +  A   +     + +     ++   + A   L 
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247

Query: 374 KLCKN 378
           KL  +
Sbjct: 248 KLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 223 VWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282
           V  L S +    + A+  L  I S  + ++  ++D  GA+  L +L+  P      + +L
Sbjct: 60  VQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEAL 117

Query: 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGD 342
             +   I  AS   + IQ  +D G +  L+++L      + ++AL  L  + S    +  
Sbjct: 118 WAL-SNI--ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174

Query: 343 AYNNSLIFPVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401
           A  ++   P +V ++L   +    + A+  L  +      E+K A  EA   GA +KL  
Sbjct: 175 AVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEA---GALEKLEQ 229

Query: 402 LLQVG 406
           L    
Sbjct: 230 LQSHE 234

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 14/210 (6%)

Query: 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271
           +    S +  M   L S D+  + +A     +I+S  + ++  ++D  GA+  L +L+  
Sbjct: 7   HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSS 65

Query: 272 PICPTATKASLVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVL 330
           P      +A        +++ AS   + IQ  +D G +  L+++L      + ++AL  L
Sbjct: 66  PNEQILQEAL-----WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFAE 389
             + S    +  A  ++   P +V ++L   +    + A+  L  +      E+  A  +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGN-EQIQAVID 178

Query: 390 ALQVGAFQKLLLLLQVGCADKTKEHVSELL 419
           A   GA   L+ LL     ++  +     L
Sbjct: 179 A---GALPALVQLLSSP-NEQILQEALWAL 204

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 68.5 bits (167), Expect = 2e-12
 Identities = 28/201 (13%), Positives = 68/201 (33%), Gaps = 9/201 (4%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           +   L   D      A +++ ++   +  +  ++      +  + + ++        + +
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCT 213

Query: 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341
                 T+ + S   + +      G +  L+ ML     S+   A++ L  L     G  
Sbjct: 214 S----GTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 342 DAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401
            A   +     +V  + + +          L  L    + E K     +   G  Q L+ 
Sbjct: 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILAS---GGPQALVN 325

Query: 402 LLQVGCADKTKEHVSELLKLL 422
           +++    +K     S +LK+L
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVL 346

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 49/327 (14%), Positives = 91/327 (27%), Gaps = 56/327 (17%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
             EDQ         + + +K+       +     VS +    +         +V      
Sbjct: 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN------TNDVETARCT 213

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI-VSSDHRKVNV 254
             TL  L     EGL  +  +  +  +V  L S   S   +A+  L  + +  +  K+ V
Sbjct: 214 SGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272

Query: 255 LLDIEGAIEPLFKLIKEP---ICPTATKA----------------------SLV------ 283
              + G ++ +  L+ +         T                        +LV      
Sbjct: 273 R--LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 330

Query: 284 -------VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336
                     R +   S         V+ G +  L   L D  + L +  L  L  L  +
Sbjct: 331 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390

Query: 337 DYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAF 396
              +        +   +V+ +          A  IL  L  N   + K    +    G  
Sbjct: 391 ATKQEGMEG---LLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQV---GGI 443

Query: 397 QKLLLLLQVGCAD-KTKEHVSELLKLL 422
           + L+  +          E     L+ L
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHL 470

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.9 bits (155), Expect = 5e-11
 Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 40/302 (13%)

Query: 157 SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA 216
              NK  IV+ G +  L            D +  +++  L TL  L   +       G  
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLT-------DPSQRLVQNCLWTLRNL---SDAATKQEGME 398

Query: 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPT 276
             +  +V  L S D++    A  +L  +  ++++   ++    G IE L + +       
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDRE 457

Query: 277 ATKASLVVVYRTITSASATEKPIQKFV-DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335
                 +   R +TS     +  Q  V     + +++++L         KA   L    +
Sbjct: 458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 517

Query: 336 SDYGRGDAYNNSLIFPVIVK-------KILRVSDLAT---------------EFAVSILW 373
                          P +V+          R + +                 E     L 
Sbjct: 518 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577

Query: 374 KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID 433
            L ++     +               + LL     +  +   + +L  L   +   E I+
Sbjct: 578 ILARDI--HNRIVIRGL---NTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIE 631

Query: 434 SM 435
           + 
Sbjct: 632 AE 633

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
              +          ++     +  +K  I+ +G    L     T++   L    S + ++
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVL 255
           LS  +   P   E       A  M+ +   L        +N +  LR +  +  ++    
Sbjct: 346 LSVCSSNKPAIVE-------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--- 395

Query: 256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315
             +EG +  L +L+        T A+ ++    +T  +   K       +G +  L+  +
Sbjct: 396 -GMEGLLGTLVQLLGSDDINVVTCAAGIL--SNLTCNNYKNK--MMVCQVGGIEALVRTV 450

Query: 316 VDA--QRSLCEKALSVLDGLCSSDYGRGDAYN---NSLIFPVIVKKILRVSDLATEFAVS 370
           + A  +  + E A+  L  L S       A N        PV+VK +   S      A  
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCAD 409
            L +              E    GA  +L+ LL     D
Sbjct: 511 GLIRNLALCP-ANHAPLREQ---GAIPRLVQLLVRAHQD 545

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 13/195 (6%)

Query: 230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTI 289
           ++ R      +L+  V +     +       AI  L KL+ +       KA+++V    +
Sbjct: 120 NVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMV--HQL 177

Query: 290 TSASATEKPIQKFVDMGLVSLLLEMLVDAQ-RSLCEKALSVLDGLCSSDYGRGDAYNNSL 348
           +   A+   I       +VS ++  + +             L  L     G    + +  
Sbjct: 178 SKKEASRHAIM--RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG 235

Query: 349 IFPVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGC 407
           I P +V  +L     +    A++ L  L  ++E   K A   A   G  QK++ LL    
Sbjct: 236 I-PALV-NMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLA---GGLQKMVALLNKTN 289

Query: 408 ADKTKEHVSELLKLL 422
             K     ++ L++L
Sbjct: 290 -VKFLAITTDCLQIL 303

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 37  FRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVT--NRVLTSFEPIPNHTI 93
             CPI+    + P+        +DR+ I+ ++       CP    ++V++  + + +  +
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 94  RRMIQDWCVENRS 106
               +   ++   
Sbjct: 242 ELRCKIAKMKESQ 254

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 67.3 bits (164), Expect = 4e-12
 Identities = 28/201 (13%), Positives = 69/201 (34%), Gaps = 9/201 (4%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           +   L   D      A +++ ++   +  +  ++      +  + + ++        + +
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCT 77

Query: 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341
                 T+ + S   + +      G +  L++ML     S+   A++ L  L     G  
Sbjct: 78  A----GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 342 DAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401
            A   +     +V  + + +          L  L    + E K     +   G  Q L+ 
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILAS---GGPQALVN 189

Query: 402 LLQVGCADKTKEHVSELLKLL 422
           +++    +K     S +LK+L
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVL 210

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 26/303 (8%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
              +          ++     +  +K  I+ +G    L     T++   L    S + ++
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 209

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVL 255
           LS  +            +  A  M+ +   L        +N +  LR + S    K    
Sbjct: 210 LSVCS-------SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-SDAATKQ--- 258

Query: 256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315
             +EG +  L +L+        T A+ ++    +T  +   K       +G +  L+  +
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGIL--SNLTCNNYKNK--MMVCQVGGIEALVRTV 314

Query: 316 VDA--QRSLCEKALSVLDGLCSSDYGRGDAYN---NSLIFPVIVKKILRVSDLATEFAV- 369
           + A  +  + E A+  L  L S       A N        PV+VK +   S      A  
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374

Query: 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL 429
            ++  L             E    GA  +L+ LL     D  +       +       R+
Sbjct: 375 GLIRNLALCPAN--HAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429

Query: 430 ECI 432
           E I
Sbjct: 430 EEI 432

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 40/303 (13%)

Query: 157 SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA 216
              NK  IV+ G +  L            D +  +++  L TL  L   +       G  
Sbjct: 213 CSSNKPAIVEAGGMQALGLHLT-------DPSQRLVQNCLWTLRNL---SDAATKQEGME 262

Query: 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPT 276
             +  +V  L S D++    A  +L  +  ++++   ++    G IE L + +       
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDRE 321

Query: 277 ATKASLVVVYRTITSASATEKPIQKFV-DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335
                 +   R +TS     +  Q  V     + +++++L         KA   L    +
Sbjct: 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 381

Query: 336 SDYGRGDAYNNSLIFPVIVK-------KILRVSDLAT---------------EFAVSILW 373
                          P +V+          R + +                 E     L 
Sbjct: 382 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441

Query: 374 KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID 433
            L ++     +               + LL     +  +   + +L  L   +   E I+
Sbjct: 442 ILARDV--HNRIVIRGL---NTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIE 495

Query: 434 SMD 436
           +  
Sbjct: 496 AEG 498

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 59.6 bits (144), Expect = 9e-10
 Identities = 47/326 (14%), Positives = 85/326 (26%), Gaps = 54/326 (16%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
             EDQ         + + +K+       +     VS +    +         +V      
Sbjct: 24  NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN------TNDVETARCT 77

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVL 255
             TL  L     EGL  +  +  +  +V  L S   S    A+  L  ++         +
Sbjct: 78  AGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136

Query: 256 LDIEGAIEPLFKLIKEP---ICPTATKA----------------------SLV------- 283
               G ++ +  L+ +         T                        +LV       
Sbjct: 137 RL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195

Query: 284 ------VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337
                    R +   S         V+ G +  L   L D  + L +  L  L  L    
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD-- 253

Query: 338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQ 397
                      +   +V+ +          A  IL  L  N   + K    +    G  +
Sbjct: 254 -AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQV---GGIE 308

Query: 398 KLLLLLQVGCA-DKTKEHVSELLKLL 422
            L+  +      +   E     L+ L
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHL 334

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 36/265 (13%), Positives = 83/265 (31%), Gaps = 29/265 (10%)

Query: 154 TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEE---ILSTLTLLFPLAGEGL 210
           T  + +NK  +   G +  L             +   + E     L  LT     A    
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAG-----DREDITEPAICALRHLTSRHQEAEMAQ 345

Query: 211 TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270
             +     +  +V  L          A + L   ++        L + +GAI  L +L+ 
Sbjct: 346 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLV 404

Query: 271 EPICPTATKASLVVVYRTITSASATEKPIQK-----------------FVDMGLVSLLLE 313
                T  + S+    +        E+ ++                     +  + L ++
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464

Query: 314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLAT-EFAVSIL 372
           +L     ++   A  VL  L        +A         +  ++L   +     +A ++L
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLT-ELLHSRNEGVATYAAAVL 522

Query: 373 WKLCKNEEREEKTAFAEALQVGAFQ 397
           +++ +++ ++ K   +  L    F+
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLFR 547

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 46/263 (17%), Positives = 94/263 (35%), Gaps = 22/263 (8%)

Query: 154 TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTY- 212
              +    + +VD  AV +  +   T        +V V E+ +  L     +AG+   Y 
Sbjct: 159 ASGTSAQTKVVVDADAVPLFIQLLYT-------GSVEVKEQAIWALGN---VAGDSTDYR 208

Query: 213 --LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270
             +   ++M  ++    S   S  R A   L  +      + +  + +  A+  L KLI 
Sbjct: 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV-VSQALPTLAKLIY 267

Query: 271 EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVL 330
                T   A   + Y     +   ++ IQ  +D+ +   L+E+L      +   AL  +
Sbjct: 268 SMDTETLVDACWAISY----LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323

Query: 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEA 390
             + + +  +     N+ + P +   +    +   + A   +  +      E+  A  +A
Sbjct: 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-EQIQAVIDA 382

Query: 391 LQVGAFQKLLLLLQVGCADKTKE 413
                   L+ LL+V      KE
Sbjct: 383 ---NLIPPLVKLLEVAEYKTKKE 402

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 9/184 (4%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           M   L S D+  + +A +  R+I+S +HR    ++   G +  L + ++E         +
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151

Query: 282 LVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR 340
                  +T+ AS T    +  VD   V L +++L      + E+A+  L  +       
Sbjct: 152 A----WALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207

Query: 341 GDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL 400
            D          I+             A   L  LC+ ++ +   +        A   L 
Sbjct: 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS----QALPTLA 263

Query: 401 LLLQ 404
            L+ 
Sbjct: 264 KLIY 267

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 25/281 (8%)

Query: 157 SDRNKRCIVDNGAVSVLAE----AFETFSKTCLDENVSVLEEILSTLT-LLFPLAGEGLT 211
            + ++  + + G +  +AE      E +  T    ++++       LT L F       T
Sbjct: 62  DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121

Query: 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271
                  MR +V  LKS     ++    VLR +           L   G+++ L +   E
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181

Query: 272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS----LCEKAL 327
               +  K+ L  +   + SA  TE         G ++ L+  L    ++    + E   
Sbjct: 182 VKKESTLKSVLSAL-WNL-SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 328 SVLDGLCSSDYGRGDAYNNSLI-----FPVIVKKILRVSDLAT-EFAVSILWKLCKNEER 381
            +L  +  S     +  +  ++        ++ + L+   L     A   LW L      
Sbjct: 240 GILRNV--SSLIATNEDHRQILRENNCLQTLL-QHLKSHSLTIVSNACGTLWNLSARNP- 295

Query: 382 EEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422
           +++ A  +    GA   L  L+            +  L+ L
Sbjct: 296 KDQEALWDM---GAVSMLKNLIHSK-HKMIAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 29/205 (14%)

Query: 226 LKSGDLSRRRNAVLVLREI-VSSDHRKVNVLLDI--EGAIEPLFKLIKEPICPTATKASL 282
           + +    +   AV VL ++    +HR       +   G ++ + +L++            
Sbjct: 41  MPAPVEHQICPAVCVLMKLSFDEEHRHA-----MNELGGLQAIAELLQVDCEMYGLTNDH 95

Query: 283 VVVY------RTITSASATEKPIQKFV--DMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334
             +         +T+ +  +   +  +    G +  L+  L      L +   SVL  L 
Sbjct: 96  YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155

Query: 335 SSDYGRGDAYNNSLIF-----PVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFA 388
                R D  +   +        +++  L V   +T +  +S LW L      E K    
Sbjct: 156 W----RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHCTENKADIC 210

Query: 389 EALQVGAFQKLLLLLQVGCADKTKE 413
                GA   L+  L       T  
Sbjct: 211 AVD--GALAFLVGTLTYRSQTNTLA 233

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 33 TPNHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPN 90
           P+   C I  D+M D V +   G +Y  E I   + E    TCP  ++   S    I N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 91 HTIRRMIQ 98
            +R+ + 
Sbjct: 70 KFLRQAVN 77

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 50/280 (17%), Positives = 97/280 (34%), Gaps = 23/280 (8%)

Query: 157 SDRNKRCIVDNGAVSVLAE----AFETFSKTCLDENVSVLEEILSTLTLL-FPLAGEGLT 211
            + ++  + + G +  +AE      E +  T    ++++       LT L F       T
Sbjct: 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 237

Query: 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271
                  MR +V  LKS     ++    VLR +           L   G+++ L +   E
Sbjct: 238 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297

Query: 272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS----LCEKAL 327
               +  K+ L  +   + SA  TE         G ++ L+  L    ++    + E   
Sbjct: 298 VKKESTLKSVLSAL-WNL-SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 328 SVLDGLCS----SDYGRGDAYNNSLIFPVIVKKILRVSDLAT-EFAVSILWKLCKNEERE 382
            +L  + S    ++  R     N+ +  ++  + L+   L     A   LW L      +
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLL--QHLKSHSLTIVSNACGTLWNLSARNP-K 412

Query: 383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422
           ++ A  +    GA   L  L+            +  L+ L
Sbjct: 413 DQEALWDM---GAVSMLKNLIHSK-HKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 34/237 (14%), Positives = 74/237 (31%), Gaps = 13/237 (5%)

Query: 154 TKESDRNKRCIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILSTL-TLLFPLAGEGLT 211
           T     NK  +    G +  L    ++       E+  + + I S L  L +        
Sbjct: 228 TFGDVANKATLCSMKGCMRALVAQLKS-------ESEDLQQVIASVLRNLSWRADVNSKK 280

Query: 212 YLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270
            L    S++ ++         S  ++ +  L  + +        +  ++GA+  L   + 
Sbjct: 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340

Query: 271 EPICPTATKASLVVVY--RTITSASATEKP-IQKFVDMGLVSLLLEMLVDAQRSLCEKAL 327
                             R ++S  AT +   Q   +   +  LL+ L     ++   A 
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 328 SVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEK 384
             L  L + +    +A  +     ++   I     +    + + L  L  N   + K
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 26/199 (13%), Positives = 73/199 (36%), Gaps = 11/199 (5%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
              D     D    +   +   +   + ++D G    L E            +  V+   
Sbjct: 202 FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-------HNDYKVVSPA 254

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVL 255
           L  +  +          + + S+++ ++  L S   S ++ A   +  I + +  ++  +
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314

Query: 256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315
           +D       L  +++     T  +A+  +      ++  + + I+  V++G +  L ++L
Sbjct: 315 ID-ANIFPALISILQTAEFRTRKEAAWAITN---ATSGGSAEQIKYLVELGCIKPLCDLL 370

Query: 316 VDAQRSLCEKALSVLDGLC 334
                 + + AL+ L+ + 
Sbjct: 371 TVMDSKIVQVALNGLENIL 389

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 32/246 (13%), Positives = 82/246 (33%), Gaps = 13/246 (5%)

Query: 156 ESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS 215
           +S   +  ++D   +  L + F           +++    +  L+ L         +   
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSK------QNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190

Query: 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP 275
           +  +  + W L   D     +A   L  +    + K+  ++D  G    L +L+      
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYK 249

Query: 276 TATKASLVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334
             + A      R + +  +  +   Q  ++   +  LL +L   + S+ ++A   +  + 
Sbjct: 250 VVSPAL-----RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304

Query: 335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVG 394
           + +  +     ++ IFP ++  +        + A   +         E+     E   + 
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364

Query: 395 AFQKLL 400
               LL
Sbjct: 365 PLCDLL 370

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280
           M+  + S    ++ +A    R+++S +    ++ ++   G +    + +K     T    
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 281 SLVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYG 339
           S       +T+ AS      +  +  G V + +E+L      + E+A+  L  +      
Sbjct: 85  SA----WVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 340 RGDAYNNSLIFPVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398
             D   +  I P +++   + + L     AV  L  LC+ +    + A            
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS----PCLNV 196

Query: 399 LLLLLQVGCAD 409
           L  LL V   D
Sbjct: 197 LSWLLFVSDTD 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 14/203 (6%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           MV  L S D    ++A+  L +I S  + ++  ++D  GA+  L +L+  P      +A 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEAL 75

Query: 282 LVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR 340
                  +++ AS   + IQ  +D G +  L+++L      + ++AL  L  + S    +
Sbjct: 76  -----WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 341 GDAYNNSLIFPVIVKKILRVSDLAT-EFAVSILWKLCKNEEREEKTAFAEALQVGAFQKL 399
             A  ++   P +V ++L   +    + A+  L  +      E+K A  EA   GA +KL
Sbjct: 131 IQAVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEA---GALEKL 185

Query: 400 LLLLQVGCADKTKEHVSELLKLL 422
             L      +K ++   E L+ L
Sbjct: 186 EQLQSHEN-EKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 20/186 (10%)

Query: 154 TKESDRNKRCIVDNGAVSVLAEAFETFSKTCL-DENVSVLEEILSTLTLLFPLAG-EGLT 211
               +   + ++D GA+  L +         L   N  +L+E L  L+ +   +G     
Sbjct: 40  ASGGNEQIQAVIDAGALPALVQ--------LLSSPNEQILQEALWALSNI--ASGGNEQI 89

Query: 212 -YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270
             +  A ++  +V  L S +    + A+  L  I S  + ++  ++D  GA+  L +L+ 
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLS 148

Query: 271 EPICPTATKASLVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSV 329
            P      +  L      +++ AS   +  Q   + G +  L ++       + ++A   
Sbjct: 149 SP-----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203

Query: 330 LDGLCS 335
           L+ L S
Sbjct: 204 LEKLQS 209

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 37/269 (13%), Positives = 94/269 (34%), Gaps = 13/269 (4%)

Query: 155 KESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG 214
            +    +  ++ +GA+  L         + L      L  +  TL+ L            
Sbjct: 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPIC 274
               +  +V  L   D     ++   +  +    + ++ +++  +G +  L KL+     
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATEL 288

Query: 275 PTATKASLVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL 333
           P  T A      R I +  + T++  QK +D G +++   +L + + ++ ++A   +  +
Sbjct: 289 PIVTPAL-----RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 343

Query: 334 CSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV 393
            +    +     N  + P +V  + +      + A   +         E+          
Sbjct: 344 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC--- 400

Query: 394 GAFQKLLLLLQVGCADKTKEHVSELLKLL 422
           G  + L+ LL      K  + + + +  +
Sbjct: 401 GIIEPLMNLLSAKD-TKIIQVILDAISNI 428

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 35/270 (12%), Positives = 87/270 (32%), Gaps = 20/270 (7%)

Query: 135 CKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL-DENVSVLE 193
               D     D    I   T   +     +V  G V  L +         L    + ++ 
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK--------LLGATELPIVT 292

Query: 194 EILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVN 253
             L  +  +     E    +  A ++      L +   + ++ A   +  I +    ++ 
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352

Query: 254 VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLE 313
            +++  G +  L  ++ +    T  +A+  +      ++  T + I   V  G++  L+ 
Sbjct: 353 QVVN-HGLVPFLVGVLSKADFKTQKEAAWAITN---YTSGGTVEQIVYLVHCGIIEPLMN 408

Query: 314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF------PVIVKKILRVSDLATEF 367
           +L      + +  L  +  +  +    G+    S++         I       ++   + 
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 468

Query: 368 AVSILWKLCKNEEREEKTAFAEALQVGAFQ 397
           +++++ K    EE EE            F 
Sbjct: 469 SLNLIEKYFSVEE-EEDQNVVPETTSEGFA 497

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 20/192 (10%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           +V  + S +L  +  A    R+++S + +     +   G I      + +  C      S
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 282 LVVVYRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYG 339
                  +T+ AS T +  +  VD G +   + +L      + E+A+  L  +       
Sbjct: 122 A----WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177

Query: 340 RGDAYNNSLIFPVIVKKILRVSDL------ATEFAVSILWKLCKNEEREEKTAFAEALQV 393
           R     +  I P++   +L V DL              L  LC+N     K        V
Sbjct: 178 RDLVIKHGAIDPLL--ALLAVPDLSTLACGYLRNLTWTLSNLCRN-----KNPAPPLDAV 230

Query: 394 -GAFQKLLLLLQ 404
                 L+ LL 
Sbjct: 231 EQILPTLVRLLH 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 7e-08
 Identities = 69/433 (15%), Positives = 130/433 (30%), Gaps = 118/433 (27%)

Query: 66  WI-----HEDGNITCPVTN---RVLTSFEPIPNH--TIRRMIQDWCVENRSYGIERIPTP 115
           W+     +    +   +     ++  ++    +H   I+  I     E R     + P  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYE 244

Query: 116 R---I--PVSS---VEVFEINCNI--TTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV 165
               +   V +      F ++C I  TT          R    ++  +   +      + 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTT----------RF--KQVTDFLSAATTTHISLD 292

Query: 166 DNGAVSVLAEAFETFSKTCLDENVSVL-EEILSTLTLLFPLAGEGLTYLGSASSMRCMVW 224
            +       E      K  LD     L  E+L+T      +  E +             W
Sbjct: 293 HHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESI------RDGLAT-W 344

Query: 225 -FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-----KEPICPTAT 278
              K  +  +       L  I+ S    +NVL   E     +F  +        I PT  
Sbjct: 345 DNWKHVNCDK-------LTTIIESS---LNVLEPAE--YRKMFDRLSVFPPSAHI-PTIL 391

Query: 279 KASLVVVYRTITSASATEKPIQKFVDMGLV------------SLLLEML--VDAQRSLCE 324
              L +++  +   S     + K     LV            S+ LE+   ++ + +L  
Sbjct: 392 ---LSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 325 KAL---SVLDGLCSSDYG--RGDAYNNSLIFPVIV---KKILRVSDLATEFAVSIL---W 373
             +   ++     S D      D Y     +  I    K I    +  T F +  L   +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQY----FYSHIGHHLKNIEH-PERMTLFRMVFLDFRF 502

Query: 374 ---KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLE 430
              K+     R + TA+  +  +     L  L Q+      K ++ +     +P   RL 
Sbjct: 503 LEQKI-----RHDSTAWNASGSI-----LNTLQQL---KFYKPYICD----NDPKYERLV 545

Query: 431 CIDSMDFKDLKRP 443
               +DF  L + 
Sbjct: 546 N-AILDF--LPKI 555

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 33 TPNHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH 91
           P+   C I  D+M D V +   G +Y  E I   + E    TCP  ++   S + +   
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71

Query: 92 T 92
          +
Sbjct: 72 S 72

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 8/200 (4%)

Query: 226 LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV 285
           L++G    R  A  ++     +       +L   GA+  L +L+    C T    +L   
Sbjct: 91  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLLRLLDRDACDTVRVKAL--- 146

Query: 286 YRTITS-ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY 344
              I+      E  + +F+ +   S+L+  +    + L  K+  +L  L           
Sbjct: 147 -FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205

Query: 345 NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAF--QKLLLL 402
            +  +   +V  +        E  +  L  L  +  +  +      L +      +  LL
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265

Query: 403 LQVGCADKTKEHVSELLKLL 422
            Q     +  E   +LL+  
Sbjct: 266 QQHEEYQEELEFCEKLLQTC 285

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 50/354 (14%), Positives = 98/354 (27%), Gaps = 60/354 (16%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
                A   +  A ++     +D+ K  +     + VL    +            V    
Sbjct: 58  GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-------PKKEVHLGA 110

Query: 196 LSTLTLL-FPLAGEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVN 253
              L  + F    +    + +   +  +V  L+   D+         L  + S D  K+ 
Sbjct: 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170

Query: 254 VLLDIEGAIEPLFKLIKEPICPTA---------TKASLVVVYRTIT------SASATEKP 298
           +   ++ A+  L   +  P                     V           S+  +E  
Sbjct: 171 I---VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEAR 227

Query: 299 IQKFVDMGLVSLLLEML------VDAQRSLCEKALSVLDGLC------------------ 334
            +     GLV  L+ ++       D+   L E  + +L  L                   
Sbjct: 228 RKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287

Query: 335 --SSDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKNEEREEKTA 386
             +++ G   A    L+F   V +I         +    E +   +  LC       +  
Sbjct: 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347

Query: 387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDL 440
            +   Q  A   +  LL     ++  +  S  L+ L       E I      +L
Sbjct: 348 RSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELIGKHAIPNL 400

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 34 PNHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT 92
           +  RC I  +     + +      Y    I K++       CP     +T  +   N  
Sbjct: 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT--QCPTCCVTVTEPDLKNNRI 77

Query: 93 IRRMIQ 98
          +  +++
Sbjct: 78 LDELVK 83

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 18  KKQPGVESGGEMELTTP-----NHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDG 71
           ++ P       +E+        +   CPI LD++K+ +T       +  + I   +   G
Sbjct: 31  QRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITAL-RSG 89

Query: 72  NITCPVTNRVLTSFEPI-PNHTIRRMIQ 98
           N  CP   + L S   + P+     +I 
Sbjct: 90  NKECPTCRKKLVSKRSLRPDPNFDALIS 117

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           + + CPI L  +++ V    G  + +  I K I +     CPV N +L   +  P++  
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFPDNFA 74

Query: 94 RRMIQD 99
          +R I  
Sbjct: 75 KREILS 80

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 6   KRLRGGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEK 65
           K L   +  +   +    E    M     N  +C I  +   + VTL+   ++    I +
Sbjct: 34  KELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINE 93

Query: 66  WIHEDGNITCPVTNRVLTS--FEPIPNHTIRRMIQDWCVENRS 106
           W+     I CP+  + + S  +  + ++ I +M+ +   E + 
Sbjct: 94  WMKR--KIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKE 134

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 37  FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPV-------TNRVLTSFEPIP 89
            +C I ++++ +PVTL    T  +   +    E  ++ CP          R  T    + 
Sbjct: 16  CQCGICMEILVEPVTLPCNHTLCKPCFQST-VEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 90  NHTIRRMIQDWC---VENRSYGIER 111
           N  +  +IQ       + R+ G E 
Sbjct: 75  NVELWTIIQKHYPRECKLRASGQES 99

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 25 SGGEMELTTPN-HFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVL 82
          SG    L+    +  C I    + D  T++    T+ +  I +  +   +  CP  N V+
Sbjct: 3  SGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVV 60

Query: 83 TSFEPIPN 90
             +P+  
Sbjct: 61 HQTQPLSG 68

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 23/213 (10%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEI 195
            S+D+         I+    + +  K+ +   G +  L +   +        N +V +  
Sbjct: 12  SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-------PNQNVQQAA 64

Query: 196 LSTLTLLFPLAGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNV 254
              L  L   +          + +R  V  L ++G+   ++    +L  + S+D  K  +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 255 LLDIEGAIEPLFKLIKEP-------ICPTATKASLVVVYRTITSA----SATEKPIQKFV 303
              I  A+  L   +  P           + +     V+   T      S+ +   Q   
Sbjct: 125 ---IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 304 DM-GLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335
           +  GL+  L+  + +   +      SV + +C 
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 37 FRCPISLDLMKDPVTLSTGITYDRENIEK-WIHEDGNITCPVTNRVLTSFEPIPNHTIRR 95
            CPI L+L+K+PV+      + +  + K    + G   CP+    +T      +    +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81

Query: 96 MIQ 98
          +++
Sbjct: 82 LVE 84

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 8/146 (5%)

Query: 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDEN-VSVLEE 194
           K +++   R +   ++    E + NK  + +   V  L +  +        +    +L  
Sbjct: 62  KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121

Query: 195 ILSTLTLLFPLAGEGLTYL-------GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247
           + S   L   +  E L  L        S              D     N    LR + S+
Sbjct: 122 LSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181

Query: 248 DHRKVNVLLDIEGAIEPLFKLIKEPI 273
                  +   +G I+ L   ++  I
Sbjct: 182 GADGRKAMRRCDGLIDSLVHYVRGTI 207

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 22 GVESGGEMELTTPNHFR----CPISLDLMKDPVTLSTGITYDRENIEKW----IHEDGNI 73
          G      M  +     +    CPI L+L+K+PV+     ++ R  I        + DG  
Sbjct: 1  GSSGSSGMASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKG 60

Query: 74 TCPVTNRVLTSFEPIPNHTIRRMIQ 98
           CPV           PN  +  +++
Sbjct: 61 NCPVCRVPYPFGNLKPNLHVANIVE 85

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
            + + CPI L  +++ V    G  + +  I K I + G+  CPV N +L   +  P++  
Sbjct: 16  ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH-KCPVDNEILLENQLFPDNFA 74

Query: 94  RRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINC 129
           +R I    V+  + G        + +  +E  + +C
Sbjct: 75  KREILSLMVKCPNEGCLHK----MELRHLEDHQAHC 106

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 35 NHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           H  C +      D  T+     ++ +  I +++  + +  CP+ +  +    P+ N   
Sbjct: 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKTRPLLNIRS 71

Query: 94 RRMIQD 99
           + +QD
Sbjct: 72 DKTLQD 77

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 35  NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPNHTI 93
             F+C    +L+  P+T        ++ +++        +CP     L        N  +
Sbjct: 51  ETFQCICCQELVFRPITTVCQHNVCKDCLDRSF-RAQVFSCPACRYDLGRSYAMQVNQPL 109

Query: 94  RRMIQ 98
           + ++ 
Sbjct: 110 QTVLN 114

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 37 FRCPISLDLMKDPVTLSTGITY-----DRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH 91
            CPI L+L+ +P++L  G +         N E      G  +CPV     +      N 
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72

Query: 92 TIRRMIQ 98
           +  +++
Sbjct: 73 HLANIVE 79

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 35  NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPNHTI 93
             F C    +L+  PVT        ++ +++   +    +CP     L      IPN  +
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSF-KAQVFSCPACRHDLGQNYIMIPNEIL 135

Query: 94  RRMIQ 98
           + ++ 
Sbjct: 136 QTLLD 140

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 4/70 (5%)

Query: 22 GVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRV 81
          G          +     C I L     PV+L     +    ++          C +  + 
Sbjct: 1  GSSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK--RCALCRQE 58

Query: 82 LT--SFEPIP 89
          +     +  P
Sbjct: 59 IPEDFLDSGP 68

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 8/71 (11%), Positives = 15/71 (21%), Gaps = 1/71 (1%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
              + C    ++++ P     G  Y    +   +       C          E I     
Sbjct: 29  EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQ-NCAACVHEGIYEEGISILES 87

Query: 94  RRMIQDWCVEN 104
                D     
Sbjct: 88  SSAFPDNAARR 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.98
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.85
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.78
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.77
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.77
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.69
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.65
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.61
3grl_A	651	General vesicular transport factor P115; vesicle t	99.56
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.52
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.48
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.48
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.48
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.44
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.44
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.41
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.4
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.4
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.39
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.39
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.39
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.39
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.36
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.36
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.36
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.34
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.34
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.33
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.32
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.31
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.31
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.31
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.28
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.28
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.27
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.27
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.27
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.25
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.25
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.22
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.22
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.21
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.19
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.15
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.13
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.1
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.07
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.04
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.02
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.01
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.99
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.98
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.98
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.98
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.98
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.95
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.94
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.94
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.94
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.93
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.91
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.85
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.84
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.82
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.82
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.75
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.7
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.68
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.67
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.66
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.65
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.63
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.57
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.53
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.53
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.51
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.47
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.47
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.45
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.41
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.39
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.36
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.36
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.33
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.29
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.29
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.26
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.22
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.16
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.14
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.11
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.1
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.02
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.98
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.97
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.94
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.89
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.87
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.83
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.8
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.59
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.58
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.55
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.41
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.34
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.29
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.29
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.81
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.8
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.17
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.17
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.0
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.97
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.96
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.88
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.88
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.83
3nw0_A	238	Non-structural maintenance of chromosomes element	95.63
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.35
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.34
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.31
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.9
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.62
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.57
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.4
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.94
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.65
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.58
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.19
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.18
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.03
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.89
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.27
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.92
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.46
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.99
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	90.82
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.63
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.48
2x19_B	963	Importin-13; nuclear transport, protein transport;	89.7
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	89.58
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.13
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	88.06
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	87.95
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	87.09
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	84.87
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	83.61
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	82.03
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.86
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	81.77
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	81.69
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	81.44
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	81.05

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.2e-33  Score=275.79  Aligned_cols=275  Identities=16%  Similarity=0.144  Sum_probs=232.4

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--c--ccccchHHHHHHHHHHHhhcCCChhhhhhcc-
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--T--CLDENVSVLEEILSTLTLLFPLAGEGLTYLG-  214 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~--~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-  214 (444)
                      .+.+..|+++|.+++.+ +++|..|++.|++++|+.+|.+..+  +  ....++.+++.|+++|..++..++++|..+. 
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34566899999999976 7899999999999999999953210  0  0012478999999999944445566888875 


Q ss_pred             cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCC
Q 038250          215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTITSA  292 (444)
Q Consensus       215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~~  292 (444)
                      ..|+||.|+.+|++++.++++.|+++|+||+.. ++++|..| ...|+||+||++| +++ ++++++.|+++|+||+.+.
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i-~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHH-HHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccC
Confidence            456699999999999999999999999999653 56889999 4579999999985 455 7899999999999999854


Q ss_pred             CCCCchhHHHH-hcCcHHHHHHHhhcccc----chHHHHHHHHHHhcC----ChhhHHHHhcCCCChHHHHHHHhhcChh
Q 038250          293 SATEKPIQKFV-DMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCS----SDYGRGDAYNNSLIFPVIVKKILRVSDL  363 (444)
Q Consensus       293 ~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~ll~~~~~~  363 (444)
                      +   +++..++ ..|+|+.|+++|.+++.    .+++.|+++|++|+.    .++++..+ .+.|+++.|+++|.+++..
T Consensus       203 ~---~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~  278 (354)
T 3nmw_A          203 T---ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLT  278 (354)
T ss_dssp             H---HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HTTTHHHHHHHHTTCSCHH
T ss_pred             h---hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH-HHcCCHHHHHHHHcCCChH
Confidence            2   3888888 79999999999987654    489999999999995    77777777 8999999999999999999


Q ss_pred             HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      +++.|+++|++|+.    ++++.+..+++.|++++|+++|+++ ++++++.|+++|..+....
T Consensus       279 v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          279 IVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            99999999999997    3477888888999999999999998 9999999999888887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=273.27  Aligned_cols=271  Identities=16%  Similarity=0.149  Sum_probs=228.3

Q ss_pred             HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--c--ccccchHHHHHHHHHHHhhcCCChhhhhhcc-cCCcH
Q 038250          145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--T--CLDENVSVLEEILSTLTLLFPLAGEGLTYLG-SASSM  219 (444)
Q Consensus       145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~--~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~g~i  219 (444)
                      +|+++|.+++.+ +++|..|++.|++++|+.+|.+..+  +  ....++.+++.|+++|.+++..+++++..+. ..|+|
T Consensus       167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI  245 (458)
T 3nmz_A          167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM  245 (458)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence            899999999765 8899999999999999999953100  0  0012477999999999955555566887775 45679


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          220 RCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      |.|+.+|++++.++++.|+++|+||+.. +++++..| ...|+||+||++|....++.+++.|+++|+||+.+.+   ++
T Consensus       246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I-~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~---~n  321 (458)
T 3nmz_A          246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT---EN  321 (458)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHH-HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH---HH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHH-HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH---HH
Confidence            9999999999999999999999999543 56899999 4579999999986543378999999999999999432   38


Q ss_pred             hHHHH-hcCcHHHHHHHhhcccc----chHHHHHHHHHHhcC----ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250          299 IQKFV-DMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCS----SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV  369 (444)
Q Consensus       299 ~~~i~-~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~  369 (444)
                      +..++ ..|+++.|+++|..++.    .+++.|+++|++|+.    .++++..+ .+.|+++.|+.+|.+++..+++.|+
T Consensus       322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i-~~~G~i~~Lv~LL~~~~~~v~~~A~  400 (458)
T 3nmz_A          322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLTIVSNAC  400 (458)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHcccHHHHHHHHcCCChHHHHHHH
Confidence            88888 79999999999987654    389999999999994    67777666 8899999999999989999999999


Q ss_pred             HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ++|++|+.    ++++.+..+++.|++++|+.+|+++ ++++++.|+++|..+..+.
T Consensus       401 ~aL~nLa~----~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          401 GTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHS----SCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            99999997    3477888888999999999999998 9999999999888887553

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.4e-31  Score=269.89  Aligned_cols=288  Identities=14%  Similarity=0.087  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|.+.    +.+.+..|+.+|++++..++.++..+++.|+||.|+++|++   +    ++.+++.|+++|..+
T Consensus         3 ~l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s---~----~~~~~~~A~~aL~nL   71 (457)
T 1xm9_A            3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS---P----NQNVQQAAAGALRNL   71 (457)
T ss_dssp             CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS---S----CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC---C----CHHHHHHHHHHHHHH
Confidence            467889988876    78899999999999998888788899999999999999953   2    588999999999944


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc--------CC-
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK--------EP-  272 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~--------~~-  272 (444)
                      ...++++|..|++.|+||.|+++|+ ++++++++.|+++|+||+. +++++..| .. |+||+|+++|.        ++ 
T Consensus        72 a~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-~~~~~~~i-~~-g~i~~Lv~ll~~~~s~~~~~~~  148 (457)
T 1xm9_A           72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEEL-IA-DALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-SSSTHHHH-HH-HHHHHHHHHTTHHHHTCC----
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-CHHhHHHH-Hh-ccHHHHHHHHhccccccccCcc
Confidence            4445999999999999999999999 8899999999999999965 47899988 45 99999999993        22 


Q ss_pred             ------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhc------cccchHHHHHHHHHHhcCChhh
Q 038250          273 ------ICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDYG  339 (444)
Q Consensus       273 ------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~~  339 (444)
                            .++.+.+.|+|+|+||+.+++    ++..+++. |++++|+.+|.+      .+..++++|+++|.+|+...+.
T Consensus       149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~  224 (457)
T 1xm9_A          149 NMSREVVDPEVFFNATGCLRNLSSADA----GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA  224 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHH----HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH
T ss_pred             chhcccccHHHHHHHHHHHHHHccCHH----HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhc
Confidence                  245677799999999998854    99999998 999999999985      3567899999999999742110


Q ss_pred             --------------------------------------------------HHHHhcCCCChHHHHHHHhhc-ChhHHHHH
Q 038250          340 --------------------------------------------------RGDAYNNSLIFPVIVKKILRV-SDLATEFA  368 (444)
Q Consensus       340 --------------------------------------------------~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a  368 (444)
                                                                        ..+.+.+.|+++.|+.+|..+ ++.+++.|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a  304 (457)
T 1xm9_A          225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC  304 (457)
T ss_dssp             HSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             cCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHH
Confidence                                                              111236678899999999875 68899999


Q ss_pred             HHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250          369 VSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL  429 (444)
Q Consensus       369 ~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~  429 (444)
                      +++|++|+...........+.++ ++|+++.|+++|+++ ++++++.|+++|+.++.+.++.
T Consensus       305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~~~  365 (457)
T 1xm9_A          305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred             HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHHHH
Confidence            99999999854321112224455 689999999999999 9999999999999998765543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.98  E-value=5.1e-31  Score=270.53  Aligned_cols=293  Identities=14%  Similarity=0.117  Sum_probs=240.1

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      ....++.+|..|.+.    +.+.+..|+++|++++..++.+|..+++.|+||+||++|++.       +.++++.|+++|
T Consensus        46 ~~~~i~~LV~~L~s~----~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL  114 (584)
T 3l6x_A           46 RQPELPEVIAMLGFR----LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGAL  114 (584)
T ss_dssp             CCCCHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHH
Confidence            345689999999875    888999999999999998899999999999999999999642       589999999999


Q ss_pred             HhhcCC--ChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc------
Q 038250          200 TLLFPL--AGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK------  270 (444)
Q Consensus       200 ~~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~------  270 (444)
                      . +++.  ++++|..|+++|+|+.||.+|++ ++.+++++|+++|++| +.+++++..|+  .|+||+|++++.      
T Consensus       115 ~-nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL-S~~~~~k~~I~--~~alp~Lv~LL~~p~sg~  190 (584)
T 3l6x_A          115 K-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV--DHALHALTDEVIIPHSGW  190 (584)
T ss_dssp             H-HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH-TTSGGGHHHHH--HHTHHHHHHHTHHHHHCC
T ss_pred             H-HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhhHHHH--hccHHHHHHHHhcccccc
Confidence            9 6665  48999999999999999999998 5789999999999999 56889999994  378999999872      


Q ss_pred             -----------CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhc------cccchHHHHHHHHHH
Q 038250          271 -----------EPICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVD------AQRSLCEKALSVLDG  332 (444)
Q Consensus       271 -----------~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~  332 (444)
                                 +..++.++++|+++|+||+.+++   .++..+++. |++++|+.+|.+      .+...+++|+++|+|
T Consensus       191 ~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N  267 (584)
T 3l6x_A          191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS---EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN  267 (584)
T ss_dssp             C----------CCCCHHHHHHHHHHHHHHTSSCH---HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence                       11257899999999999999875   358888885 667899999975      366789999999999


Q ss_pred             hcCChhhHH-------------------------HHhcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHH
Q 038250          333 LCSSDYGRG-------------------------DAYNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTA  386 (444)
Q Consensus       333 L~~~~~~~~-------------------------~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~  386 (444)
                      |+...+...                         ..+.+.++|+.|+.+|.. .++.+++.|+++|++||...+.. ...
T Consensus       268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~~  346 (584)
T 3l6x_A          268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GRY  346 (584)
T ss_dssp             HHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HHH
T ss_pred             hhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cHH
Confidence            997632110                         111334556788998875 47889999999999998753221 122


Q ss_pred             HHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCC
Q 038250          387 FAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECI  432 (444)
Q Consensus       387 ~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~  432 (444)
                      .+.++ +.|+++.|+.||.++ ++.+++.|+++|+.++.+.++..-|
T Consensus       347 ~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I  392 (584)
T 3l6x_A          347 IRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI  392 (584)
T ss_dssp             HHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH
Confidence            33344 789999999999999 9999999999999999887655443

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=2.7e-30  Score=265.89  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHh-ccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWT-KESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      ..++++|+.|.+.    |.+.+..|+.++|++. ++.....+.++++|+||.||++|++.  +    ++.+|..|+++|.
T Consensus        57 ~~i~~~v~~l~s~----d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~--~----~~~lq~~Aa~aL~  126 (510)
T 3ul1_B           57 WSVEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----CSPIQFESAWALT  126 (510)
T ss_dssp             CCHHHHHHHHTSS----CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT--T----CHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC--C----CHHHHHHHHHHHH
Confidence            3588899988876    8999999999999865 44444578999999999999999532  2    5889999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC--------
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP--------  272 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~--------  272 (444)
                      ++.+.+++++..+++.|+||.|+.+|++++.++++.|+++|+||+..+++++..+ ...|++++|+.+|...        
T Consensus       127 nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v-~~~G~i~~Ll~lL~~~~~~~~~~~  205 (510)
T 3ul1_B          127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACG  205 (510)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHHHHhccchhhhHH
Confidence            6667888999999999999999999999999999999999999977778888887 5578888888877532        


Q ss_pred             --------------------------------------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHH
Q 038250          273 --------------------------------------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEM  314 (444)
Q Consensus       273 --------------------------------------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~l  314 (444)
                                                            .+++++..|+++|.+|+.+..   .....+++.|+++.|+++
T Consensus       206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~l  282 (510)
T 3ul1_B          206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLVKL  282 (510)
T ss_dssp             HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH---HHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh---hhHHHHHhcccchhhhhh
Confidence                                                  134555666666666665543   345667889999999999


Q ss_pred             hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhC
Q 038250          315 LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVG  394 (444)
Q Consensus       315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g  394 (444)
                      |.+++..++..++.+|++|+..++.....+.+.|+++.|+.+|.+.++.+++.|+++|.+|+..    +......+++.|
T Consensus       283 L~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~----~~~~~~~v~~~g  358 (510)
T 3ul1_B          283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVNHG  358 (510)
T ss_dssp             HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTT
T ss_pred             hcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC----cHHHHHHHHhcC
Confidence            9999999999999999999987776666668999999999999888999999999999999984    466777788999


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          395 AFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +++.|+.+++++ +..+|+.|+++|..+...
T Consensus       359 ~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          359 LVPFLVGVLSKA-DFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence            999999999999 899999999988877653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=261.08  Aligned_cols=295  Identities=15%  Similarity=0.081  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHHhhcc--------cCChhHHHHHHHHHHHHhccCcccchhHhhcCch----------HHHHHHHHhhccc
Q 038250          122 VEVFEINCNITTACK--------SEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAV----------SVLAEAFETFSKT  183 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~--------~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i----------~~Lv~lL~~~~~~  183 (444)
                      +-++.++..|.....        +++++.+.+|+++|.+++...++.....++.|++          +.+++++.+...+
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            346778888876421        1457899999999999999988888888888888          6666666542101


Q ss_pred             cc-ccchHHHH-------HHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHH
Q 038250          184 CL-DENVSVLE-------EILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-----------GDLSRRRNAVLVLREI  244 (444)
Q Consensus       184 ~~-~~~~~~~~-------~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L  244 (444)
                      .. +.++ +.+       .|+++|. +++.++++|..|.+.|++++|+.+|..           .++.+++.|+++|.||
T Consensus       150 ~~~~~~~-~~~~~~~~~~qAv~aL~-nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL  227 (458)
T 3nmz_A          150 MDQDKNP-MPAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL  227 (458)
T ss_dssp             SCCCSCC---CCCTTTTHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCC-ccchhhHHHHHHHHHHH-HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence            00 0011 433       8999999 889999999999999999999999953           2477899999999999


Q ss_pred             HhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh-hccccchH
Q 038250          245 VSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML-VDAQRSLC  323 (444)
Q Consensus       245 ~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~  323 (444)
                      +..++.++..+....|+||+||++|+++ ++++++.|+++|+||+.+.+  +.++..+++.|+|++|+++| .+++..++
T Consensus       228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~--~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          228 TFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCC--HHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             hCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC--HHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            8777778887744457799999999988 89999999999999998522  24899999999999999986 55688899


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcCh----hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          324 EKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSD----LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       324 ~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      +.|+.+|++|+. +++++..++...|+++.|+++|.+.++    .+++.|+++|++|+.+-. ++++.++.+++.|++++
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a-~~~~~~~~i~~~G~i~~  383 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA-TNEDHRQILRENNCLQT  383 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHcccHHH
Confidence            999999999998 778888885589999999999987654    489999999999995200 12667788889999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      |+.+|+++ +..+++.|+++|..++
T Consensus       384 Lv~LL~~~-~~~v~~~A~~aL~nLa  407 (458)
T 3nmz_A          384 LLQHLKSH-SLTIVSNACGTLWNLS  407 (458)
T ss_dssp             HHHHSSCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-ChHHHHHHHHHHHHHH
Confidence            99999998 8899999999888887

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=2.8e-29  Score=265.85  Aligned_cols=282  Identities=12%  Similarity=0.040  Sum_probs=239.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc-----------------------------cc---hhHhhcCc
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR-----------------------------NK---RCIVDNGA  169 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------------------~~---~~i~~~G~  169 (444)
                      +.++.|+..|++.    +...+..|++.|.+++...+.                             ++   +.++++|+
T Consensus       421 g~Ip~LV~LL~s~----d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa  496 (810)
T 3now_A          421 ASIHALMDLARGG----NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI  496 (810)
T ss_dssp             HHHHHHHHHHHTT----CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred             chHHHHHHHhCCC----ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence            3466777777654    788999999999999985431                             12   67889999


Q ss_pred             hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch
Q 038250          170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH  249 (444)
Q Consensus       170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~  249 (444)
                      +|.|+.+|++.       ++.+++.|+++|. +++.++++|..+++.|++|+|+.+|++++...++.|+++|.+|+...+
T Consensus       497 Vp~LV~LL~s~-------s~~vqe~Aa~aL~-NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          497 TTALCALAKTE-------SHNSQELIARVLN-AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHHHHHTCC-------CHHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            99999999532       5899999999999 778888999999999999999999999999999999999999964332


Q ss_pred             hhHHHhh--cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHH
Q 038250          250 RKVNVLL--DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKAL  327 (444)
Q Consensus       250 ~~~~~i~--~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~  327 (444)
                      . ...+.  ...|+||+|+.+|.++.+...+..|+++|.||+.+.+   +++..++++|+++.|+.+|.++++.+++.|+
T Consensus       569 p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d---~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~  644 (810)
T 3now_A          569 P-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE---SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA  644 (810)
T ss_dssp             H-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred             h-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence            2 22221  1247999999999866344556789999999999864   4899999999999999999999999999999


Q ss_pred             HHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-hChHHHHHHHHhcC
Q 038250          328 SVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-VGAFQKLLLLLQVG  406 (444)
Q Consensus       328 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~g~l~~Ll~ll~~~  406 (444)
                      ++|+||+.+++.+..++...|+++.|+.++.+.+..+++.|+++|++|+..    ++...+.+++ .|++++|+.+++++
T Consensus       645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~  720 (810)
T 3now_A          645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV----SVKCCEKILAIASWLDILHTLIANP  720 (810)
T ss_dssp             HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred             HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCHHHHHHHHCCC
Confidence            999999999999988853479999999999888899999999999999983    4667788887 99999999999998


Q ss_pred             CChHHHHHHHHHHHHHHh
Q 038250          407 CADKTKEHVSELLKLLNP  424 (444)
Q Consensus       407 ~~~~~k~~a~~ll~~l~~  424 (444)
                       +.++++.|++++..+..
T Consensus       721 -d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          721 -SPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             -SHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHHHh
Confidence             99999999997777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=4.7e-29  Score=257.86  Aligned_cols=284  Identities=14%  Similarity=0.135  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHh-ccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWT-KESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      .++.++..+.+.    |.+.+..|+..++++. .+.....+.+++.|+||.||++|...  +    ++.++..|+++|..
T Consensus        77 ~l~~lv~~l~s~----d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~--~----~~~~q~~Aa~aL~n  146 (529)
T 3tpo_A           77 SVEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----CSPIQFESAWALTN  146 (529)
T ss_dssp             CHHHHHHHHTSS----CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT--T----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC--C----CHHHHHHHHHHHHH
Confidence            467788877765    8999999999999865 44445578899999999999999531  2    58899999999996


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---------
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---------  272 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---------  272 (444)
                      +.+.+++++..+++.|+||.|+.+|.+++.++++.|+++|+||+..+++++..+ ...|++++|+.+|..+         
T Consensus       147 ia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i-~~~g~i~~Ll~lL~~~~~~~~~~~~  225 (529)
T 3tpo_A          147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACGY  225 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHH-HHcCCcHHHHHHHhccchhHhHHHH
Confidence            667778888899999999999999999999999999999999977778888888 5578888888777532         


Q ss_pred             -------------------------------------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh
Q 038250          273 -------------------------------------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML  315 (444)
Q Consensus       273 -------------------------------------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL  315 (444)
                                                           .+++++..|+|+|.+|+.+..   .....+++.|+++.|+++|
T Consensus       226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~---~~~~~v~~~g~i~~Lv~lL  302 (529)
T 3tpo_A          226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLVKLL  302 (529)
T ss_dssp             HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH---HHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh---hhHHHHHhccchHHHHHHh
Confidence                                                 134555566666666665543   3556678899999999999


Q ss_pred             hccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhCh
Q 038250          316 VDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGA  395 (444)
Q Consensus       316 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~  395 (444)
                      .+.+..++..++.+|++|+.+++.....+.+.|+++.|+.+|.+.++.+++.|+++|++|+.+    +......+++.|+
T Consensus       303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~----~~~~~~~v~~~g~  378 (529)
T 3tpo_A          303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVNHGL  378 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTH
T ss_pred             cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHhcCc
Confidence            999999999999999999987766666658999999999999988999999999999999984    4667777889999


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          396 FQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       396 l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      ++.|+.+|.++ +..+++.|+++|..+...
T Consensus       379 i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          379 VPFLVGVLSKA-DFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999999 899999999988777643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2e-29  Score=255.71  Aligned_cols=287  Identities=11%  Similarity=0.056  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.++..|.+.    +.+.+..|+++|++++..++++|..|++.|+||.|+++|..  .+    +.++++.|+++|. 
T Consensus        44 g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~--~~----~~~~~~~a~~aL~-  112 (457)
T 1xm9_A           44 GGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR--TG----NAEIQKQLTGLLW-  112 (457)
T ss_dssp             THHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT--CC----CHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh--CC----CHHHHHHHHHHHH-
Confidence            5577888888764    88899999999999999888999999999999999999951  22    5889999999999 


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHh--------cC--------CHHHHHHHHHHHHHHHhcchhhHHHhhccc-ccHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLK--------SG--------DLSRRRNAVLVLREIVSSDHRKVNVLLDIE-GAIEP  264 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~-g~i~~  264 (444)
                      +++.++++|..+++ |++|.|+.+|.        ++        +.++..+|+++|+||+. +++++..| ... |++++
T Consensus       113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~-~~~~~~~i-~~~~g~i~~  189 (457)
T 1xm9_A          113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-ADAGRQTM-RNYSGLIDS  189 (457)
T ss_dssp             HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT-SHHHHHHH-TTSTTHHHH
T ss_pred             HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc-CHHHHHHH-HHcCCCHHH
Confidence            77777889998998 99999999993        33        34556699999999964 58899988 545 99999


Q ss_pred             HHHHhcCC------------------------------------------------------------------------
Q 038250          265 LFKLIKEP------------------------------------------------------------------------  272 (444)
Q Consensus       265 Lv~ll~~~------------------------------------------------------------------------  272 (444)
                      |+.+|+++                                                                        
T Consensus       190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
T 1xm9_A          190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE  269 (457)
T ss_dssp             HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred             HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence            99888630                                                                        


Q ss_pred             --------------------------CChHHHHHHHHHHHHHhcCCCCCC-ch-hHHHHhcCcHHHHHHHhhccccchHH
Q 038250          273 --------------------------ICPTATKASLVVVYRTITSASATE-KP-IQKFVDMGLVSLLLEMLVDAQRSLCE  324 (444)
Q Consensus       273 --------------------------~~~~~~~~a~~aL~~L~~~~~~~~-~~-~~~i~~~g~v~~Lv~lL~~~~~~~~~  324 (444)
                                                .++..++.|+|+|.||+.++.... .. +..+.++|++|.|+++|.+++..++.
T Consensus       270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~  349 (457)
T 1xm9_A          270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR  349 (457)
T ss_dssp             CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHH
T ss_pred             ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHH
Confidence                                      124566778999999998764000 11 22334689999999999999999999


Q ss_pred             HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh------hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD------LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      .|+++|.+|+.+++.+..+ . .|+++.|+++|...+.      .+...++++|.++...    +.+....+.+.|++++
T Consensus       350 ~A~~aL~nls~~~~~~~~i-~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~----~~~~~~~i~~~g~l~~  423 (457)
T 1xm9_A          350 SGASLLSNMSRHPLLHRVM-G-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS----QPQLAKQYFSSSMLNN  423 (457)
T ss_dssp             HHHHHHHHHHTSGGGHHHH-H-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT----CTHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHH-H-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHcCCHHH
Confidence            9999999999988777665 3 4899999999987532      4677899999999874    4567777779999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLNPHRAR  428 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~  428 (444)
                      |+.++.++.++++++.|.++|..+-.+.+.
T Consensus       424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l  453 (457)
T 1xm9_A          424 IINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence            999999886789999999998877655543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.8e-29  Score=259.12  Aligned_cols=287  Identities=13%  Similarity=0.096  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      +.|+.|+..|.+.    +.+.+..|+++|++++.. ++++|..|+++|+||.|+.+|.+.  .    +.++++.|+.+|.
T Consensus        90 G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~--~----~~~~~e~aa~aL~  159 (584)
T 3l6x_A           90 KGIPVLVGLLDHP----KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA--R----DMDLTEVITGTLW  159 (584)
T ss_dssp             THHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC--C----SHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC--C----CHHHHHHHHHHHH
Confidence            4577888888765    889999999999999985 688999999999999999999642  1    4789999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLK------------------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI  262 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i  262 (444)
                       +++.++++|..|++ ++|+.|+++|.                  ..+.+++++|+++|+||++.+++++..|....|++
T Consensus       160 -nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli  237 (584)
T 3l6x_A          160 -NLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV  237 (584)
T ss_dssp             -HHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred             -HHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence             88889999999985 67999999872                  12478999999999999766677788885556777


Q ss_pred             HHHHHHhcC------C----------------------------------------------------------------
Q 038250          263 EPLFKLIKE------P----------------------------------------------------------------  272 (444)
Q Consensus       263 ~~Lv~ll~~------~----------------------------------------------------------------  272 (444)
                      ++||++|++      .                                                                
T Consensus       238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL  317 (584)
T 3l6x_A          238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL  317 (584)
T ss_dssp             HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence            788887752      1                                                                


Q ss_pred             ---CChHHHHHHHHHHHHHhcCCCCC-CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250          273 ---ICPTATKASLVVVYRTITSASAT-EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL  348 (444)
Q Consensus       273 ---~~~~~~~~a~~aL~~L~~~~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  348 (444)
                         .++.++++|++||.||+.+.... ..++..+.+.|+++.|+++|.+++..+++.|+++|.||+.+..++..|  ..|
T Consensus       318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g  395 (584)
T 3l6x_A          318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKH  395 (584)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhC
Confidence               12344455555555555443100 012334456799999999999999999999999999999988887655  469


Q ss_pred             ChHHHHHHHhhc--------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHHH
Q 038250          349 IFPVIVKKILRV--------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSELL  419 (444)
Q Consensus       349 ~i~~Lv~ll~~~--------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll  419 (444)
                      +||.||.+|.++        +..+...|+++|.||+.    ++.+..+.++++|+|+.|+.+++++ .++.+++.|+.+|
T Consensus       396 ~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a----~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL  471 (584)
T 3l6x_A          396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA----ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL  471 (584)
T ss_dssp             HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence            999999999765        35677899999999987    4577888888999999999999985 4789999999999


Q ss_pred             HHHHhhc
Q 038250          420 KLLNPHR  426 (444)
Q Consensus       420 ~~l~~~~  426 (444)
                      ..+..+.
T Consensus       472 ~nl~~~~  478 (584)
T 3l6x_A          472 QTIWGYK  478 (584)
T ss_dssp             HHHHTSH
T ss_pred             HHHHcCH
Confidence            9887654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.9e-29  Score=246.20  Aligned_cols=247  Identities=12%  Similarity=0.074  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHhhc-------ccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHH
Q 038250          122 VEVFEINCNITTAC-------KSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLE  193 (444)
Q Consensus       122 ~~i~~ll~~L~~~~-------~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~  193 (444)
                      +.++.|+..|.+..       ...+...+++|+++|.+++..++.+|..+.. .|+||.|+.+|++   +    +.++++
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~----~~~v~~  145 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---E----SEDLQQ  145 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC---S----CHHHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC---C----CHHHHH
Confidence            45777888875321       1124568999999999999888878888865 5669999999953   2    588999


Q ss_pred             HHHHHHHhhcCC--ChhhhhhcccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc
Q 038250          194 EILSTLTLLFPL--AGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK  270 (444)
Q Consensus       194 ~a~~~L~~~l~~--~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~  270 (444)
                      .|+++|. +++.  ++++|..|++.|+||.|+.+| ++++.++++.|+.+|++|+..+++++..|+...|+||+|+++|+
T Consensus       146 ~A~~aL~-nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~  224 (354)
T 3nmw_A          146 VIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT  224 (354)
T ss_dssp             HHHHHHH-HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred             HHHHHHH-HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc
Confidence            9999999 6665  468999999999999999975 56789999999999999965577888888546899999999998


Q ss_pred             CCCCh---HHHHHHHHHHHHHhc---CCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHH
Q 038250          271 EPICP---TATKASLVVVYRTIT---SASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDA  343 (444)
Q Consensus       271 ~~~~~---~~~~~a~~aL~~L~~---~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i  343 (444)
                      ++.+.   ++++.|+++|+||+.   ..+   +++..++++|+++.|+++|.+++..+++.|+++|++|+. +++.+..+
T Consensus       225 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  301 (354)
T 3nmw_A          225 YRSQTNTLAIIESGGGILRNVSSLIATNE---DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL  301 (354)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            76322   589999999999996   232   489999999999999999999999999999999999995 56666666


Q ss_pred             hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250          344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  380 (444)
                       .+.|+||.|++++.++++.+++.|+++|.+|+.+.+
T Consensus       302 -~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          302 -WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             -HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             -HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence             899999999999998899999999999999999755

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.96  E-value=1.2e-28  Score=253.45  Aligned_cols=286  Identities=10%  Similarity=0.128  Sum_probs=238.4

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      .+.|+.|+..|..+   ++++.+.+|+++|.+++..+++++..+++.|+||.|+.+|.+.       +.++++.|+++|.
T Consensus        99 ~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-------~~~v~e~A~~aL~  168 (510)
T 3ul1_B           99 AGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALG  168 (510)
T ss_dssp             TTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence            35678888888765   3678899999999999999999999999999999999999532       6889999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHH-----------------------------------------------hcCCHHH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFL-----------------------------------------------KSGDLSR  233 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL-----------------------------------------------~~~~~~~  233 (444)
                      .+...++++|..+.+.|+++.|+.+|                                               .+++.++
T Consensus       169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  248 (510)
T 3ul1_B          169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  248 (510)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence            44444566666666666655555554                                               4455667


Q ss_pred             HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHH
Q 038250          234 RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLE  313 (444)
Q Consensus       234 ~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~  313 (444)
                      +..|+++|.+|+...++....+ ...|+++.|+.+|.++ ++.++..++++|.||+.+++   .++..+++.|+++.|+.
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~  323 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPS  323 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-
T ss_pred             HHHHHHHHHHHhhchhhhHHHH-HhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCH---HHHHHHhhccchHHHHH
Confidence            7888899999965556666666 5679999999999998 79999999999999998765   57788899999999999


Q ss_pred             HhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhh
Q 038250          314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV  393 (444)
Q Consensus       314 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  393 (444)
                      +|.+++..+++.|+++|.+|+.+...+...+.+.|+++.|+.++.+++..+++.|+++|.+++..   ++.+.+..+++.
T Consensus       324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~---~~~~~~~~L~~~  400 (510)
T 3ul1_B          324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVEQIVYLVHC  400 (510)
T ss_dssp             CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHC
Confidence            99999999999999999999987766666668899999999999999999999999999999986   346777788899


Q ss_pred             ChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          394 GAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       394 g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      |++++|+.+|.+. ++++...+...|..+-+.
T Consensus       401 g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          401 GIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             TCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            9999999999998 889999998866655443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=1.4e-28  Score=260.59  Aligned_cols=285  Identities=14%  Similarity=0.084  Sum_probs=232.6

Q ss_pred             CCCChHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHHhccCcccchhHh-hcCchHHHHHHHHhhcccccccchHHHH
Q 038250          117 IPVSSVEVFEINCNITTACKSE--DQAGCRDLVAKIKKWTKESDRNKRCIV-DNGAVSVLAEAFETFSKTCLDENVSVLE  193 (444)
Q Consensus       117 ~~~~~~~i~~ll~~L~~~~~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~  193 (444)
                      ++...+.++.+++.+...+.++  |.+.+..|++.|..++.. +..|..++ +.|++|.|+.+|++.       +..++.
T Consensus       368 ~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~-------d~~i~~  439 (810)
T 3now_A          368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGG-------NQSCLY  439 (810)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTT-------CGGGHH
T ss_pred             cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCC-------ChHHHH
Confidence            4445556666666555544444  778999999999999976 45666666 589999999999642       578999


Q ss_pred             HHHHHHHhhcCC-Ch-----------------------------hhh---hhcccCCcHHHHHHHHhcCCHHHHHHHHHH
Q 038250          194 EILSTLTLLFPL-AG-----------------------------EGL---TYLGSASSMRCMVWFLKSGDLSRRRNAVLV  240 (444)
Q Consensus       194 ~a~~~L~~~l~~-~~-----------------------------~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~  240 (444)
                      .|+++|. |++. .+                             .++   +.++++|++|.|+.+|+++++.+|++|+++
T Consensus       440 ~al~~L~-NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~a  518 (810)
T 3now_A          440 GVVTTFV-NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARV  518 (810)
T ss_dssp             HHHHHHH-HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHH
Confidence            9999999 5554 32                             122   567889999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHH---HhcCcHHHHHHHhhc
Q 038250          241 LREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKF---VDMGLVSLLLEMLVD  317 (444)
Q Consensus       241 L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i---~~~g~v~~Lv~lL~~  317 (444)
                      |.||+ .+++++..| ...|++|+|+.+|+++ ++..++.|+++|.+|+.+.+    ....+   ...|+|++|+++|.+
T Consensus       519 L~NLA-~d~~~r~~V-v~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~  591 (810)
T 3now_A          519 LNAVC-GLKELRGKV-VQEGGVKALLRMALEG-TEKGKRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQ  591 (810)
T ss_dssp             HHHHH-TSHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTST
T ss_pred             HHHHc-CCHHHHHHH-HHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCC
Confidence            99995 678899999 5679999999999998 78999999999999998764    32222   124799999999985


Q ss_pred             ccc-chHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-hC
Q 038250          318 AQR-SLCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-VG  394 (444)
Q Consensus       318 ~~~-~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~g  394 (444)
                      +.. ..+..|+++|.||+..+ +.+..+ +++|+++.|+.+|.+.++.+++.|+++|+||+.+     ++.+..++. .|
T Consensus       592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~I-i~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-----~~~~~~~v~~~g  665 (810)
T 3now_A          592 DCTALENFESLMALTNLASMNESVRQRI-IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNND  665 (810)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-----HHHHHHHHSSSS
T ss_pred             CCcHHHHHHHHHHHHHHhcCCHHHHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-----hHHHHHHHhccC
Confidence            533 44578999999999975 455566 8889999999999998999999999999999984     445666664 79


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          395 AFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +++.|+.++.+. +..+++.|+++|.++..
T Consensus       666 ~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          666 RVKFLALLCEDE-DEETATACAGALAIITS  694 (810)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence            999999999998 89999999999999886

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=6e-28  Score=249.57  Aligned_cols=288  Identities=11%  Similarity=0.132  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.|+..|.+.    +.+.+..|+++|.+++.+++.+|..+++.|++++|+.+|......  .....+++.++++|. 
T Consensus       162 Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~--~~~~~~~~~a~~~L~-  234 (529)
T 3tpo_A          162 GAIPAFISLLASP----HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS--TLACGYLRNLTWTLS-  234 (529)
T ss_dssp             THHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG--GSCHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHcCC----CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh--HhHHHHHHHHHHHHH-
Confidence            4566777766665    889999999999999999999999999999999999999532111  113457888999998 


Q ss_pred             hcCCChh-hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          202 LFPLAGE-GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       202 ~l~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      +++.+.. ........|++|.|+.+|.+++++++..|+++|.+|+...++....+ ...|+++.|+.+|.++ ++.++..
T Consensus       235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~v~~~  312 (529)
T 3tpo_A          235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTP  312 (529)
T ss_dssp             HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHH
T ss_pred             HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHH-HhccchHHHHHHhcCC-ChhHHHH
Confidence            5544443 33344457899999999999999999999999999976667777777 5679999999999988 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      ++++|.||+.+++   .++..+++.|+++.|+.+|.+++..+++.|+++|++|+.+...+...+.+.|++|.|+.++.++
T Consensus       313 a~~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~  389 (529)
T 3tpo_A          313 ALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA  389 (529)
T ss_dssp             HHHHHHHHTTSCH---HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred             HHHHHHHHHccch---HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence            9999999998765   5788889999999999999999999999999999999987777666668999999999999999


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..++..|+++|.+++.+   ++.+....+++.|++++|+.+|.+. ++++...+...|..+-+.
T Consensus       390 ~~~v~~~A~~aL~nl~~~---~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          390 DFKTQKAAAWAITNYTSG---GTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            999999999999999975   3467777888999999999999998 889999988866665443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=3.1e-27  Score=244.10  Aligned_cols=285  Identities=13%  Similarity=0.069  Sum_probs=247.1

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      ...++.++..|.+.    +++.+..|+..|+.++.... .++..+++.|++|.|+.+|.+.  .    ++.++..|+++|
T Consensus        73 ~~~l~~lv~~L~s~----~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~--~----~~~v~~~A~~~L  142 (528)
T 4b8j_A           73 LESLPAMIGGVYSD----DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE--D----FPQLQFEAAWAL  142 (528)
T ss_dssp             --CHHHHHHHHTSS----CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT--T----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC--C----CHHHHHHHHHHH
Confidence            34578888888665    88999999999999976554 6788899999999999999532  1    388999999999


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      ..+...+++++..+++.|+++.|+.+|.++++.+++.|+++|++|+...+.++..+ ...|++++|+.+|....++.++.
T Consensus       143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i-~~~g~l~~Ll~lL~~~~~~~v~~  221 (528)
T 4b8j_A          143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV-LANGALLPLLAQLNEHTKLSMLR  221 (528)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH-HHTTCHHHHHHTCCTTCCHHHHH
T ss_pred             HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH-HHCCcHHHHHHHHhcCCCHHHHH
Confidence            96666668899999999999999999999999999999999999977778888888 55799999999995544799999


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      .++++|.+|+.+..    ........|+++.|+.+|.+++..++..|+++|.+|+...+.+...+.+.|+++.|+.+|.+
T Consensus       222 ~a~~~L~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~  297 (528)
T 4b8j_A          222 NATWTLSNFCRGKP----QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH  297 (528)
T ss_dssp             HHHHHHHHHHCSSS----CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCC----CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence            99999999999865    45556678999999999999999999999999999998877776665889999999999998


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .++.++..|+++|++|+..    +......+++.|+++.|+.+|.++.++.+++.|+++|..+..
T Consensus       298 ~~~~v~~~a~~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          298 PSPSVLIPALRTVGNIVTG----DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             SCHHHHHHHHHHHHHHTTS----CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHcC----CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            8999999999999999984    466777788999999999999977678999999998888874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=5.1e-27  Score=217.92  Aligned_cols=243  Identities=17%  Similarity=0.203  Sum_probs=216.1

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      |+++.|+++|.+   +    +++++..|+.+|..+...+++++..+.+.|+++.|+.+|++++.+++..|+++|.+|+..
T Consensus         2 ~~i~~L~~~L~~---~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~   74 (252)
T 4hxt_A            2 NDVEKLVKLLTS---T----DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG   74 (252)
T ss_dssp             CHHHHHHHHTTC---S----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHcC---C----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            689999999953   2    588999999999966666667999999999999999999999999999999999999666


Q ss_pred             chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHH
Q 038250          248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKAL  327 (444)
Q Consensus       248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~  327 (444)
                      +++++..+ ...|+++.|+.+|+++ ++.++..|+++|.+|+...+   .++..+++.|+++.|+++|.++++.++..++
T Consensus        75 ~~~~~~~~-~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~  149 (252)
T 4hxt_A           75 PDEAIKAI-VDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA  149 (252)
T ss_dssp             CHHHHHHH-HHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             ChHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            58899988 5579999999999988 79999999999999996543   4889999999999999999999999999999


Q ss_pred             HHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCC
Q 038250          328 SVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGC  407 (444)
Q Consensus       328 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~  407 (444)
                      ++|.+|+...+.....+.+.|+++.|++++.+.++.++..|+++|.+|+..    ++.....+++.|+++.|+++++++ 
T Consensus       150 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll~~~-  224 (252)
T 4hxt_A          150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEVLQKLLTST-  224 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHHHHHHHTTHHHHHHHGGGCS-
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHCCC-
Confidence            999999986666544448899999999999988999999999999999984    466777788999999999999988 


Q ss_pred             ChHHHHHHHHHHHHHHhhcc
Q 038250          408 ADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       408 ~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ++.+++.|.++|..+.....
T Consensus       225 ~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          225 DSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHTCB
T ss_pred             cHHHHHHHHHHHHHHHcCCC
Confidence            89999999999999987664

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.5e-27  Score=219.73  Aligned_cols=239  Identities=16%  Similarity=0.221  Sum_probs=212.5

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      ...+.++.+|.+.       +++++..|+.+|..+++.+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+..
T Consensus        12 ~~~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   84 (252)
T 4db8_A           12 SELPQMTQQLNSD-------DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG   84 (252)
T ss_dssp             CSHHHHHHHHHSS-------CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            4578999999642       588999999999757777778888999999999999999999999999999999999766


Q ss_pred             chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhccccchHHHH
Q 038250          248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVDAQRSLCEKA  326 (444)
Q Consensus       248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~a  326 (444)
                      +++++..+ ...|+++.|+.+|+++ ++.+++.|+++|.+|+.+.+    ++ ..+++.|+++.|+++|.+++..+++.|
T Consensus        85 ~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  158 (252)
T 4db8_A           85 GNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEA  158 (252)
T ss_dssp             CHHHHHHH-HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             CHHHHHHH-HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCc----hHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence            88899888 5579999999999998 89999999999999999876    66 888999999999999999999999999


Q ss_pred             HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      +++|.+|+..++.....+.+.|+++.|++++.+.++.+++.|+++|.+|+..    +++....+++.|+++.|+.+++++
T Consensus       159 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~L~~ll~~~  234 (252)
T 4db8_A          159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAGALEKLEQLQSHE  234 (252)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHCCcHHHHHHHhCCC
Confidence            9999999986655555548899999999999888999999999999999973    466777788999999999999998


Q ss_pred             CChHHHHHHHHHHHHHHh
Q 038250          407 CADKTKEHVSELLKLLNP  424 (444)
Q Consensus       407 ~~~~~k~~a~~ll~~l~~  424 (444)
                       ++.+++.|+++|..+..
T Consensus       235 -~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          235 -NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             -SSHHHHTHHHHHHTTC-
T ss_pred             -CHHHHHHHHHHHHHHhc
Confidence             88999999998887754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=9.4e-27  Score=216.13  Aligned_cols=243  Identities=19%  Similarity=0.210  Sum_probs=215.0

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|.+.    +.+.+..|++.|..++..++.++..+++.|+++.|+++|.+   +    +.+++..|+.+|..+
T Consensus         3 ~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~----~~~v~~~a~~~L~~l   71 (252)
T 4hxt_A            3 DVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS---T----DSEVQKEAARALANI   71 (252)
T ss_dssp             HHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC---C----CHHHHHHHHHHHHHH
Confidence            467788888775    78899999999999999888899999999999999999953   2    588999999999944


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ...+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+..+++++..+ ...|+++.|+++++++ ++.++..++
T Consensus        72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~l~~~-~~~~~~~a~  149 (252)
T 4hxt_A           72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI-VDAGGVEVLVKLLTST-DSEVQKEAA  149 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHH
Confidence            44448999999999999999999999999999999999999965788888888 4579999999999988 799999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      ++|.+|+.+.+   .++..+++.|+++.|+++|.++++.++..|+++|.+|+.........+.+.|+++.|++++.+.++
T Consensus       150 ~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  226 (252)
T 4hxt_A          150 RALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS  226 (252)
T ss_dssp             HHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHcCCH---HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence            99999998764   366888999999999999999999999999999999998555555444889999999999998899


Q ss_pred             hHHHHHHHHHHHHcccccc
Q 038250          363 LATEFAVSILWKLCKNEER  381 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~  381 (444)
                      .+++.|+++|.+|+...+.
T Consensus       227 ~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHHHHHHcCCCc
Confidence            9999999999999986553

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.1e-27  Score=220.07  Aligned_cols=239  Identities=18%  Similarity=0.228  Sum_probs=208.1

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      ...+.+++.|.+.    |.+.+..|++.|+.+...++.++..+++.|+++.|+++|.+.       ++.++..|+.+|..
T Consensus        12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~   80 (252)
T 4db8_A           12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSN   80 (252)
T ss_dssp             CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence            3467788888886    888999999999877666778899999999999999999532       58899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH-HHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV-NVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      +...+++++..+.+.|+++.|+.+|+++++++++.|+++|.+|+ .+++.+ ..+ ...|+++.|+++|+++ ++.++..
T Consensus        81 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~-~~~~~i~~L~~lL~~~-~~~v~~~  157 (252)
T 4db8_A           81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQE  157 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHHH-HHTTHHHHHHHGGGCS-CHHHHHH
T ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh-cCCchHHHHH-HHCCCHHHHHHHHhCC-CHHHHHH
Confidence            54457899999999999999999999999999999999999995 555555 666 5579999999999988 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      |+++|.+|+.+.+   .++..+++.|+++.|+++|.++++.+++.|+++|.+|+..++.....+.+.|+++.|++++.+.
T Consensus       158 a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  234 (252)
T 4db8_A          158 ALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE  234 (252)
T ss_dssp             HHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HHHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC
Confidence            9999999998764   4777889999999999999999999999999999999965544444448899999999999988


Q ss_pred             ChhHHHHHHHHHHHHcc
Q 038250          361 SDLATEFAVSILWKLCK  377 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~  377 (444)
                      ++.+++.|+++|.+|+.
T Consensus       235 ~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          235 NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSHHHHTHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999999986

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.95  E-value=3.3e-26  Score=236.38  Aligned_cols=283  Identities=14%  Similarity=0.134  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.++..|.+.   +++..+..|+++|.+++..++.++..+++.|+++.|+.+|.+   +    +..+++.|+++|..
T Consensus       117 g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~----~~~v~~~a~~aL~~  186 (528)
T 4b8j_A          117 GVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS---S----SDDVREQAVWALGN  186 (528)
T ss_dssp             TCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC---C----CHHHHHHHHHHHHH
Confidence            4467788888765   138899999999999999888999999999999999999953   2    58899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      ++..++.++..+.+.|+++.|+.+| .+.+..++..|+++|.+|+...+.....+  ..|+++.|+.+|.++ ++.++..
T Consensus       187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~-~~~v~~~  263 (528)
T 4b8j_A          187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ--TRPALPALARLIHSN-DEEVLTD  263 (528)
T ss_dssp             HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH--HTTHHHHHHHHTTCC-CHHHHHH
T ss_pred             HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHCCC-CHHHHHH
Confidence            5555677888999999999999999 56689999999999999965544333333  369999999999988 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      |+++|.+|+.+..   .....+++.|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+.
T Consensus       264 a~~aL~~l~~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~  340 (528)
T 4b8j_A          264 ACWALSYLSDGTN---DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN  340 (528)
T ss_dssp             HHHHHHHHTSSCH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCH---HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence            9999999998764   2456778999999999999999999999999999999986655555558899999999999988


Q ss_pred             -ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          361 -SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       361 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                       ++.++..|+++|.+|+..    +......+++.|+++.|+.+|.++ ++.+++.|+++|..+...
T Consensus       341 ~~~~v~~~A~~~L~nl~~~----~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          341 LKKSIKKEACWTISNITAG----NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHCC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence             899999999999999983    466777788999999999999998 899999999988888765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=1.8e-25  Score=231.00  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      .++.++..|.+.    +++.+..|+..|+.+... ...++..+++.|++|.|+.+|.+.  .    ++.++..|+++|..
T Consensus        88 ~i~~lv~~L~s~----~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~--~----~~~v~~~A~~~L~~  157 (530)
T 1wa5_B           88 ELPQMTQQLNSD----DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN--Q----PEMLQLEAAWALTN  157 (530)
T ss_dssp             CHHHHHHHHSCS----SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT--S----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC--C----CHHHHHHHHHHHHH
Confidence            467777777664    888999999999999754 345677889999999999999531  1    58899999999996


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      +...+++++..+++.|+++.|+.+|+++++++++.|+++|.+|+..+++++..+ ...|++++|+.++.+. ++.++..|
T Consensus       158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~-~~~v~~~a  235 (530)
T 1wa5_B          158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV-LQCNAMEPILGLFNSN-KPSLIRTA  235 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHGGGSC-CHHHHHHH
T ss_pred             HhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHH-HHcCcHHHHHHHhccC-CHHHHHHH
Confidence            666667888888899999999999999999999999999999976667888888 4579999999999986 79999999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS  361 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~  361 (444)
                      +++|.+|+.+..   .........|+++.|+.+|.+++..++..|+++|.+|+.........+.+.|+++.|+.+|.+.+
T Consensus       236 ~~~L~~L~~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~  312 (530)
T 1wa5_B          236 TWTLSNLCRGKK---PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES  312 (530)
T ss_dssp             HHHHHHHHCCSS---SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHhCCCC---CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC
Confidence            999999998862   15556677899999999999989999999999999999765443333378899999999998888


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ..++..|+++|.+|+..    ++.....+++.|+++.|+.+|+++ +..+++.|.++|..+..
T Consensus       313 ~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          313 TLVQTPALRAVGNIVTG----NDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHcC----CHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            99999999999999984    455666777899999999999988 89999999998888874

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=1.8e-25  Score=231.09  Aligned_cols=283  Identities=14%  Similarity=0.118  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|.+.   .+...+..|+++|.+++..++.++..+++.|+++.|+.+|.+.       +..+++.|+++|..+
T Consensus       131 ~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l  200 (530)
T 1wa5_B          131 VVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNV  200 (530)
T ss_dssp             CHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence            456666666553   2678999999999999998888899999999999999999643       588999999999955


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      +..+++++..+.+.|+++.|+.+|.+.+..++..|+++|.+|+.......... ...|+++.|+.+|.++ ++.++..|+
T Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~-d~~v~~~a~  278 (530)
T 1wa5_B          201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS-VVSQALPTLAKLIYSM-DTETLVDAC  278 (530)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH-HHGGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred             hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHhHHHHHHHHHcCC-CHHHHHHHH
Confidence            55567888888889999999999999999999999999999965542333333 2369999999999988 799999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      ++|.+|+.+..   .....+++.|+++.|+.+|.+.+..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+.+.
T Consensus       279 ~~L~~L~~~~~---~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  355 (530)
T 1wa5_B          279 WAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE  355 (530)
T ss_dssp             HHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred             HHHHHHhCCCH---HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH
Confidence            99999998754   367788899999999999999899999999999999998655555544788999999999988888


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .+++.|+++|.+|+..    +.+....+++.|+++.|+.+|..+ ++.+++.|+++|..+...
T Consensus       356 ~vr~~A~~aL~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          356 NIKKEACWTISNITAG----NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHHHHHHHHHHTTS----CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence            9999999999999984    356677777899999999999988 899999999988888654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=5e-25  Score=222.19  Aligned_cols=283  Identities=13%  Similarity=0.114  Sum_probs=242.1

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.++..|.+.   .+...+..|++.|..++..++.+...+++.|+++.|+.+|.+   +    ++.+++.|+.+|..
T Consensus        64 ~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~----~~~vr~~a~~~L~~  133 (450)
T 2jdq_A           64 GVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---E----FEDVQEQAVWALGN  133 (450)
T ss_dssp             THHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---C----CHHHHHHHHHHHHH
Confidence            4566777777654   267899999999999998877788888999999999999953   2    68999999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      +...+++++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... +..+..+ . .|++|.|+.++.++ ++.++.
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~-~~~v~~  210 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVS-DTDVLA  210 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCC-CHHHHH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccC-CHHHHH
Confidence            555566788888899999999999996 68999999999999996544 4444444 3 69999999999988 799999


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      .++++|.+|+.+..   .++..+++.|+++.|+++|.+.+..+++.|+++|.+|+...+...+.+.+.|+++.|+.++.+
T Consensus       211 ~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  287 (450)
T 2jdq_A          211 DACWALSYLSDGPN---DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS  287 (450)
T ss_dssp             HHHHHHHHHTSSSH---HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCc---HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence            99999999998753   367788899999999999998899999999999999998776666555888999999999988


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .+..+++.|+++|.+|+..    +.+....+++.|+++.|+.+|.++ ++.+|+.|+++|..+...
T Consensus       288 ~~~~vr~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          288 PKESIKKEACWTISNITAG----NRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             SSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            8889999999999999983    456677777899999999999988 899999999988888653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=2e-24  Score=217.70  Aligned_cols=283  Identities=13%  Similarity=0.108  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|.+    +++..+..|++.|.+++..++.++..+.+.|+++.|+.+|.+  +.    +..++..|+++|..+
T Consensus       108 ~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~----~~~v~~~a~~~L~~l  177 (450)
T 2jdq_A          108 AVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QN----RLTMTRNAVWALSNL  177 (450)
T ss_dssp             HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CC----CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CC----CHHHHHHHHHHHHHH
Confidence            45556666655    488999999999999999888899999999999999999952  12    588999999999944


Q ss_pred             cCCC-hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          203 FPLA-GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       203 l~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      +... +..+..+. .++++.|+.+|++++.+++..|+++|.+|+...++.+..+ ...|+++.|+.+|.++ ++.++..|
T Consensus       178 ~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~-~~~v~~~a  254 (450)
T 2jdq_A          178 CRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMHN-DYKVVSPA  254 (450)
T ss_dssp             HCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTCS-CHHHHHHH
T ss_pred             hCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCCC-chhHHHHH
Confidence            4443 33333333 8999999999999999999999999999976566777777 4579999999999987 79999999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhhHHHHhcCCCChHHHHHHHhhc
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYGRGDAYNNSLIFPVIVKKILRV  360 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~ll~~~  360 (444)
                      +++|.+|+.+.+   .....+++.|+++.|+++|.+++..+++.|+++|.+|+.. ++....+ .+.|+++.|+.++.+.
T Consensus       255 ~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~~l~~~  330 (450)
T 2jdq_A          255 LRAVGNIVTGDD---IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV-IDANIFPALISILQTA  330 (450)
T ss_dssp             HHHHHHHTTSCH---HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHhhCCh---HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHhcC
Confidence            999999998865   3556678899999999999998999999999999999974 4444555 7789999999999988


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ++.++..|+++|.+++..   ++++....+++.|+++.|+.++..+ ++.+++.|...|..+....
T Consensus       331 ~~~v~~~a~~~L~~l~~~---~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          331 EFRTRKEAAWAITNATSG---GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG  392 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence            999999999999999974   1355667777899999999999988 8999999999777776543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=1.5e-24  Score=223.44  Aligned_cols=287  Identities=15%  Similarity=0.099  Sum_probs=236.2

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      .+.++.+++.|.++   .+.+.+..|+..|++++.. +.++..+++.|++|.|+++|++   +    ++.++..|+.+|.
T Consensus        58 ~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~---~----~~~v~~~a~~~L~  126 (529)
T 1jdh_A           58 PQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS---P----VDSVLFYAITTLH  126 (529)
T ss_dssp             HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC---C----CHHHHHHHHHHHH
Confidence            35677888888764   2788999999999999876 4599999999999999999953   2    5889999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      .++..+++.+..+.+.|+++.|+.+|++++.+++..++.+|.+|+..+++++..+ ...|+++.|+++|+++.....+..
T Consensus       127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i-~~~~~i~~L~~ll~~~~~~~~~~~  205 (529)
T 1jdh_A          127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWT  205 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHHHHHHHHHhCChHHHHHH
Confidence            5444456778888899999999999999999999999999999987778899988 456999999999998755677778


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRS  321 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~  321 (444)
                      ++.+|.+|+.+.+    ++..+++.|+++.|++++.                                       +.++.
T Consensus       206 a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~  281 (529)
T 1jdh_A          206 TSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN  281 (529)
T ss_dssp             HHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHH
Confidence            8999999998776    8888888887777665554                                       34566


Q ss_pred             hHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          322 LCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      +++.|+++|.+|+..+ +.+..+ .+.|+++.|++++...  ++.+++.|+++|++|+...+. ++..+..+++.|+++.
T Consensus       282 v~~~a~~~L~~L~~~~~~~~~~~-~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~i~~~~~i~~  359 (529)
T 1jdh_A          282 VVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPV  359 (529)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHH-HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHH-HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHcCChhH
Confidence            7778888888888754 455555 7889999999999864  368899999999999986542 2445667779999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      |+.+|+++.++.+++.|.+++..+...
T Consensus       360 L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          360 VVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhcC
Confidence            999999884568999999988888754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.4e-24  Score=227.82  Aligned_cols=288  Identities=15%  Similarity=0.098  Sum_probs=237.4

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      .+.++.+++.|.+.   .+.+.+..|+..|+.++... .++..+.+.|+++.|+.+|.+   +    ++.++..|+.+|.
T Consensus        55 ~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---~----~~~v~~~A~~aL~  123 (644)
T 2z6h_A           55 PQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGS---P----VDSVLFYAITTLH  123 (644)
T ss_dssp             HHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTC---S----SHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhC---C----CHHHHHHHHHHHH
Confidence            35677888888764   37889999999999999774 599999999999999999953   2    5889999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      .++..+++.+..+.+.|+++.|+.+|++++..++..++.+|.+|+..+++++..+ ...|+++.|+++|++......+..
T Consensus       124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~~~  202 (644)
T 2z6h_A          124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWT  202 (644)
T ss_dssp             HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH-HHcCChHHHHHHHHcCChHHHHHH
Confidence            5555556778888899999999999999999888889999999976788899988 457999999999998855778899


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccc
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRS  321 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~  321 (444)
                      ++.+|++|+.+..    ++..+++.|+++.|++++.                                       +.+..
T Consensus       203 a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~  278 (644)
T 2z6h_A          203 TSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN  278 (644)
T ss_dssp             HHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHH
Confidence            9999999998776    8999999998887776554                                       34566


Q ss_pred             hHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhcC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          322 LCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRVS--DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      +++.|+++|.+|+..+ +.+..+ .+.|+++.|+.++...+  +.+++.|+++|.+|+...+. ++.....+++.|+++.
T Consensus       279 v~~~a~~aL~~L~~~~~~~~~~v-~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~-~~~~q~~v~~~~~l~~  356 (644)
T 2z6h_A          279 VVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPV  356 (644)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHH-HHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHccChHH
Confidence            7777888888887754 445555 78899999999998743  68999999999999975442 2334455678999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      |+.+|++..++.+++.|+++|..+..+.
T Consensus       357 L~~lL~~~~~~~v~~~a~~~L~nLa~~~  384 (644)
T 2z6h_A          357 VVKLLHPPSHWPLIKATVGLIRNLALCP  384 (644)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HHHHhCccCchHHHHHHHHHHHHHccCH
Confidence            9999998845789999999998887543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=2.2e-25  Score=203.45  Aligned_cols=199  Identities=14%  Similarity=0.102  Sum_probs=168.2

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD  248 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~  248 (444)
                      .+|.||++|.+.  +   .+.+++..|++.|..++..++++|..|.+.|+||.||++|++++.++|+.|+++|+||+..+
T Consensus         9 ~i~~lV~lL~s~--~---~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            9 TLERAVSMLEAD--H---MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CHHHHHHTCCSS--C---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCC--C---chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            589999999532  1   12388889999998445568899999999999999999999999999999999999997667


Q ss_pred             hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---c--------
Q 038250          249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---D--------  317 (444)
Q Consensus       249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~--------  317 (444)
                      ++++..| ...|+||+||++|++..+.++++.|+++|+||+..++    ++..+++ +++++|++++.   .        
T Consensus        84 ~~nk~~I-~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~----~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~  157 (233)
T 3tt9_A           84 NDNKLEV-AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK----LKNLMIT-EALLTLTENIIIPFSGWPEGDYP  157 (233)
T ss_dssp             HHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG----GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCC
T ss_pred             HHHHHHH-HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh----hHHHHHh-ccHHHHHHHHhccccCCcccccc
Confidence            8999999 5579999999999853378999999999999999876    8998887 47999998763   1        


Q ss_pred             -----cccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhc------ChhHHHHHHHHHHHHccc
Q 038250          318 -----AQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKN  378 (444)
Q Consensus       318 -----~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~  378 (444)
                           .+..++++|..+|+||+. ++++|..+....|+|+.||.+++.+      +...+|+|+.+|.||+..
T Consensus       158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                 145789999999999997 5688888844457899999999863      557889999999999974

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=8.7e-24  Score=217.65  Aligned_cols=283  Identities=14%  Similarity=0.096  Sum_probs=233.3

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILST  198 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~  198 (444)
                      +.+.++.++..|.+.    ++..+..|+..|.+++.+++ ++..+.+ .|+++.|+++|.+.  .    +.+++..|+.+
T Consensus        15 ~~~~i~~Lv~lL~~~----~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~--~----~~~~~~~a~~~   83 (529)
T 1jdh_A           15 ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT--N----DVETARCTAGT   83 (529)
T ss_dssp             --CHHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC--C----CHHHHHHHHHH
T ss_pred             hHhhHHHHHHHhCCC----CHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC--C----CHHHHHHHHHH
Confidence            345678888877754    88999999999999997654 6666665 59999999999632  1    57899999999


Q ss_pred             HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      |. .++.+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+++.+..+ ...|++|.|+++|+++ ++.++
T Consensus        84 L~-~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~ll~~~-~~~~~  160 (529)
T 1jdh_A           84 LH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFL  160 (529)
T ss_dssp             HH-HHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH-HHHTHHHHHHHGGGCC-CHHHH
T ss_pred             HH-HHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH-HHcCCHHHHHHHHhcC-CHHHH
Confidence            99 788888899999999999999999999999999999999999977667778888 5579999999999988 78999


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI  357 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll  357 (444)
                      ..++.+|.+++..++   +++..+++.|+++.|+++|.+++ ...++.++.+|.+|+.+++++..+ .+.|+++.|++++
T Consensus       161 ~~~~~~L~~la~~~~---~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~~~~L~~ll  236 (529)
T 1jdh_A          161 AITTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHL  236 (529)
T ss_dssp             HHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH-HHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH-HHCCCHHHHHHHH
Confidence            999999999998653   58999999999999999998764 456778899999999988888877 6667776666554


Q ss_pred             h---------------------------------------hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          358 L---------------------------------------RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       358 ~---------------------------------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      .                                       +.++.+++.|+++|++|+..    +.+.+..+.+.|+++.
T Consensus       237 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~  312 (529)
T 1jdh_A          237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----NYKNKMMVCQVGGIEA  312 (529)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT----CHHHHHHHHHTTHHHH
T ss_pred             hCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHcCChHH
Confidence            3                                       34556677778888888773    3556777779999999


Q ss_pred             HHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 038250          399 LLLLLQVGC-ADKTKEHVSELLKLLNP  424 (444)
Q Consensus       399 Ll~ll~~~~-~~~~k~~a~~ll~~l~~  424 (444)
                      |+++|.... .+.+++.|..+|..+..
T Consensus       313 L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          313 LVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            999998742 37899999998888864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=7.2e-25  Score=200.01  Aligned_cols=197  Identities=12%  Similarity=0.095  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHhhcccCCh--hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          123 EVFEINCNITTACKSEDQ--AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      .++.++..|.+.    |.  +.+..|+..|+.++..++.+|..+++.|+||+||++|++.       +.++|+.|+++|.
T Consensus         9 ~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-------~~~vq~~Aa~aL~   77 (233)
T 3tt9_A            9 TLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-------NEDVQRAVCGALR   77 (233)
T ss_dssp             CHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-------CHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence            477788888775    65  7888999999999999899999999999999999999642       5889999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---CC----
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK---EP----  272 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~---~~----  272 (444)
                      .+...+++||..|+++|+||.|+++|++ ++.+++++|+.+|++| +..+++|..| .. ++||+|++++.   ++    
T Consensus        78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~~~k~~i-~~-~~i~~Lv~ll~~p~sG~~~~  154 (233)
T 3tt9_A           78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSNDKLKNLM-IT-EALLTLTENIIIPFSGWPEG  154 (233)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSGGGHHHH-HH-HHHHHHCCCCCHHHHCCCGG
T ss_pred             HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcChhhHHHH-Hh-ccHHHHHHHHhccccCCccc
Confidence            4444478999999999999999999984 6899999999999999 6778899998 43 67999998763   11    


Q ss_pred             --------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhcc------ccchHHHHHHHHHHhcCC
Q 038250          273 --------ICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVDA------QRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       273 --------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~  336 (444)
                              .++.++++|+++|+||+..++   ++|+.|.+. |+|+.|+.+++.+      +...+|+|+.+|+||+..
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~---~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAGA---DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSCH---HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                    256899999999999998663   489999985 7789999999853      567899999999999974

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=6.6e-24  Score=191.99  Aligned_cols=200  Identities=20%  Similarity=0.261  Sum_probs=177.4

Q ss_pred             cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      ..|..+.|+.+|++++++++..|+++|.+|+..+++.+..+ ...|+++.|+.+|+++ ++.++..|+++|.+|+.+++ 
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-   86 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-   86 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc-
Confidence            36889999999999999999999999999976788888888 5579999999999998 89999999999999997654 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK  374 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  374 (444)
                        .++..+++.|+++.|+++|.+++..+++.|+++|.+|+.+.+.....+.+.|+++.|++++.+.+..+++.|+++|.+
T Consensus        87 --~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  164 (210)
T 4db6_A           87 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN  164 (210)
T ss_dssp             --HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence              488999999999999999999999999999999999997655554444889999999999998899999999999999


Q ss_pred             HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          375 LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       375 L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      |+..    +++....+++.|+++.|+.++.++ ++.+++.|.++|..++.
T Consensus       165 l~~~----~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          165 IASG----GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTS----CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             HHcC----CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            9984    355677778999999999999988 99999999999988864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=222.24  Aligned_cols=283  Identities=14%  Similarity=0.099  Sum_probs=234.6

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILST  198 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~  198 (444)
                      +.+.++.|+..|.+.    +...+..|+..|.+++.+.+ ++..+... |+++.|+++|.+.  .    +.+++..|+.+
T Consensus        12 ~~g~i~~Lv~lL~~~----~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~--~----~~~~~~~A~~~   80 (644)
T 2z6h_A           12 ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT--N----DVETARCTAGT   80 (644)
T ss_dssp             CTTTHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC--C----CHHHHHHHHHH
T ss_pred             hhchHHHHHHHHcCC----CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC--C----CHHHHHHHHHH
Confidence            345688888888754    88999999999999998754 67777654 9999999999531  1    58899999999


Q ss_pred             HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      |. +++.+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+..+..+ ...|+++.|+.+|+++ ++..+
T Consensus        81 L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~~~  157 (644)
T 2z6h_A           81 LH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFL  157 (644)
T ss_dssp             HH-HHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH-HHTTHHHHHHHGGGCC-CHHHH
T ss_pred             HH-HHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHH-HHCCChHHHHHHHCcC-CHHHH
Confidence            99 788888899999999999999999999999999999999999977766777777 4579999999999998 78888


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI  357 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll  357 (444)
                      ..++.+|.+|+...+   +++..+++.|+++.|+++|.+.+ ..+++.++.+|.+|+.+++++..+ .+.|+++.|++++
T Consensus       158 ~~a~~~L~~La~~~~---~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l-~~~g~l~~L~~ll  233 (644)
T 2z6h_A          158 AITTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHL  233 (644)
T ss_dssp             HHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHH-HHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCc---HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHH-HHCCCHHHHHHHH
Confidence            889999999997543   48999999999999999998664 567899999999999999888888 6778877776655


Q ss_pred             hh---------------------------------------cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          358 LR---------------------------------------VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       358 ~~---------------------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      ..                                       .+..+++.|+++|.+|+..    +.+.+..+++.|+++.
T Consensus       234 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~----~~~~~~~v~~~g~v~~  309 (644)
T 2z6h_A          234 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----NYKNKMMVCQVGGIEA  309 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCCHHH
Confidence            44                                       3455566666667776663    2456667778999999


Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHHHh
Q 038250          399 LLLLLQVGCA-DKTKEHVSELLKLLNP  424 (444)
Q Consensus       399 Ll~ll~~~~~-~~~k~~a~~ll~~l~~  424 (444)
                      |+.+|....+ +.+++.|.++|..+..
T Consensus       310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          310 LVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            9999987533 7999999998888863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=1.1e-23  Score=190.55  Aligned_cols=199  Identities=16%  Similarity=0.228  Sum_probs=175.9

Q ss_pred             hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250          166 DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV  245 (444)
Q Consensus       166 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~  245 (444)
                      ..|+.+.|+.+|.+   +    +.+++..|+.+|..+...+++++..+.+.|+++.|+.+|+++++++++.|+++|.+|+
T Consensus        10 ~~~~~~~l~~LL~s---~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   82 (210)
T 4db6_A           10 HGSELPQMVQQLNS---P----DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA   82 (210)
T ss_dssp             ---CHHHHHHHTTC---S----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHhcC---C----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            45788999999953   2    6899999999999555578889999999999999999999999999999999999997


Q ss_pred             hcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250          246 SSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK  325 (444)
Q Consensus       246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~  325 (444)
                      ..+++++..+ ...|+++.|+.+|+++ ++.+++.|+++|.||+.+.+   .++..+++.|+++.|+++|.+++..+++.
T Consensus        83 ~~~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  157 (210)
T 4db6_A           83 SGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQE  157 (210)
T ss_dssp             TSCHHHHHHH-HHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             cCCcHHHHHH-HHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence            6788888888 5579999999999998 89999999999999998764   46778899999999999999999999999


Q ss_pred             HHHHHHHhcCC-hhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          326 ALSVLDGLCSS-DYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       326 a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      |+++|.+|+.. ++.+..+ .+.|+++.|++++.+.++.+++.|+++|.+|+.
T Consensus       158 a~~aL~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          158 ALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99999999997 5555555 889999999999998899999999999999986

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=1.3e-22  Score=218.52  Aligned_cols=287  Identities=15%  Similarity=0.103  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++.|+..|.+.   .+.+.+..|+.+|++++.. +.++..+.+.|+|+.|+.+|++.       ++.++..|+.+|..
T Consensus       192 ~~i~~Lv~~L~~~---~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~n  260 (780)
T 2z6g_A          192 QMVSAIVRTMQNT---NDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHN  260 (780)
T ss_dssp             HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence            4456666666554   3788999999999999876 56789999999999999999532       58899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      ++..+++.+..+.+.|+++.|+.+|++++..++..++.+|.+|+..+++++..+ ...|+++.|+.+|+++........+
T Consensus       261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i-~~~~~i~~Lv~lL~~~~~~~~~~~a  339 (780)
T 2z6g_A          261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTT  339 (780)
T ss_dssp             HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcCCHHHHHHHHhcCCHHHHHHHH
Confidence            555556778888899999999999999999999999999999976778899988 4569999999999988555667788


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccch
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRSL  322 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~~  322 (444)
                      +.+|.+|+....    ++..+++.|+++.|+.+|.                                       +.+..+
T Consensus       340 ~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v  415 (780)
T 2z6g_A          340 SRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV  415 (780)
T ss_dssp             HHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHH
Confidence            999999998766    8888888887777666553                                       445667


Q ss_pred             HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-C-hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHH
Q 038250          323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-S-DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL  400 (444)
Q Consensus       323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll  400 (444)
                      ++.|+++|.+|+..+......+.+.|+++.|+++|... + +.+++.|+++|.+|+...+. +......++..|+++.|+
T Consensus       416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~-~~~~~~~v~~~~~l~~L~  494 (780)
T 2z6g_A          416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD-AEMAQNAVRLHYGLPVVV  494 (780)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT-HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHcCCHHHHH
Confidence            78888888888876544344448899999999999874 3 38999999999999975432 122344566899999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          401 LLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       401 ~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .+|.+...+.+++.|+++|..+...
T Consensus       495 ~lL~~~~~~~v~~~A~~aL~nLa~~  519 (780)
T 2z6g_A          495 KLLHPPSHWPLIKATVGLIRNLALC  519 (780)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred             HHhcCCChHHHHHHHHHHHHHHhcC
Confidence            9999884569999999999888754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.90  E-value=3.9e-22  Score=214.83  Aligned_cols=275  Identities=15%  Similarity=0.164  Sum_probs=227.1

Q ss_pred             HHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhh
Q 038250          130 NITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEG  209 (444)
Q Consensus       130 ~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~  209 (444)
                      .|...+.+++...+..|++.|.+++.....   .....|+++.|+++|.+   .    +..+++.|+.+|..+...++++
T Consensus       364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~---~----d~~vr~~A~~aL~~L~~~~~~~  433 (780)
T 2z6g_A          364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS---D----DINVVTCAAGILSNLTCNNYKN  433 (780)
T ss_dssp             HHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC---S----CHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHhCCHHH
Confidence            333333345778899999999999976532   22345789999999953   2    6889999999999555556788


Q ss_pred             hhhcccCCcHHHHHHHHhc-CC-HHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          210 LTYLGSASSMRCMVWFLKS-GD-LSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       210 ~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      +..+.+.|+++.|+.+|.. ++ ..+++.|+++|++|+..+++   .+..+ ...|+++.|+.+|.++..+.+++.|+++
T Consensus       434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v-~~~~~l~~L~~lL~~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGL  512 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence            9999999999999999976 33 48999999999999654443   34566 4579999999999988445899999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc----------------------cchHHHHHHHHHHhcCChhhHHH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ----------------------RSLCEKALSVLDGLCSSDYGRGD  342 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~----------------------~~~~~~a~~~L~~L~~~~~~~~~  342 (444)
                      |.||+.+..    ++..+.+.|+++.|+++|.+++                      +++++.++.+|.+|+.+.+++..
T Consensus       513 L~nLa~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~  588 (780)
T 2z6g_A          513 IRNLALCPA----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV  588 (780)
T ss_dssp             HHHHHSSHH----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHhcCHH----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHH
Confidence            999998876    8888999999999999997543                      34678899999999998888877


Q ss_pred             HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          343 AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       343 i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      + .+.|+|+.|++++.+.++.++..|+.+|.+|+..     .+....+.+.|+++.|+.++.+. ++.+++.|+++|..+
T Consensus       589 l-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-----~~~~~~i~~~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l  661 (780)
T 2z6g_A          589 I-RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRM  661 (780)
T ss_dssp             H-HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred             H-HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            7 7889999999999988999999999999999863     55666677999999999999988 999999999988888


Q ss_pred             Hhhc
Q 038250          423 NPHR  426 (444)
Q Consensus       423 ~~~~  426 (444)
                      ....
T Consensus       662 ~~~~  665 (780)
T 2z6g_A          662 SEDK  665 (780)
T ss_dssp             HTTS
T ss_pred             HcCC
Confidence            7644

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=3.1e-22  Score=190.19  Aligned_cols=224  Identities=16%  Similarity=0.141  Sum_probs=179.1

Q ss_pred             hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      .+-+..|+..|. .+..+.++...+.+.|+++.|+. +|+++++.+++.|+++|++++..++..+..+ ...|++|+|+.
T Consensus        54 ~e~k~~Al~~L~-~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~v-v~~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHHHHHH
Confidence            456788899998 66667788888899999999999 9999999999999999999988888888888 55799999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh-hhHHHHhcC
Q 038250          268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD-YGRGDAYNN  346 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~  346 (444)
                      +|+++.++.+++.|+|+|.||+.+..   .....++++|+++.|+.+|.+++..++..|+++|.+|+..+ +.+..+ ++
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v-v~  207 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQE---AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL-CS  207 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH-HH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH-HH
Confidence            99964368999999999999998764   35678899999999999999999999999999999998754 445555 89


Q ss_pred             CCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhh-ChHHH----HHHHHhcCC-ChHHHHHHHHHHH
Q 038250          347 SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV-GAFQK----LLLLLQVGC-ADKTKEHVSELLK  420 (444)
Q Consensus       347 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~-g~l~~----Ll~ll~~~~-~~~~k~~a~~ll~  420 (444)
                      .|+++.|+.+|.+.+..+++.|+.+|.+|+..    ........... ..+..    -++-++... .....++|..++.
T Consensus       208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~----~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~  283 (296)
T 1xqr_A          208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD----FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  283 (296)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT----CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC----ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999984    23333332221 11222    233444331 3566666666555


Q ss_pred             HH
Q 038250          421 LL  422 (444)
Q Consensus       421 ~l  422 (444)
                      .+
T Consensus       284 ~~  285 (296)
T 1xqr_A          284 TC  285 (296)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-21  Score=203.98  Aligned_cols=251  Identities=13%  Similarity=0.119  Sum_probs=202.3

Q ss_pred             cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHH---HHHH
Q 038250          160 NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLS---RRRN  236 (444)
Q Consensus       160 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~  236 (444)
                      ++..+.++|+||.|+.++++.       ++.+++.|+++|. +++.++++|..+++.|+++.|+.+|.+++..   .++.
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~-nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~  520 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIY-NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL  520 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHH-HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence            567888999999999999642       5889999999999 8889999999999999999999999988644   8999


Q ss_pred             HHHHHHHHHhcchhhHHHhhc--ccccHHHHHHHhcC-CCCh------------HHHHHHHHHHHHHhcCCCCC-CchhH
Q 038250          237 AVLVLREIVSSDHRKVNVLLD--IEGAIEPLFKLIKE-PICP------------TATKASLVVVYRTITSASAT-EKPIQ  300 (444)
Q Consensus       237 A~~~L~~L~s~~~~~~~~i~~--~~g~i~~Lv~ll~~-~~~~------------~~~~~a~~aL~~L~~~~~~~-~~~~~  300 (444)
                      |+.+|.+|+ ...+....++.  ..|+|++|+.+|.. +...            -.+..|+.||.||+..++|+ ++.+.
T Consensus       521 AA~ALArLl-is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~  599 (778)
T 3opb_A          521 GCRALTRML-IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK  599 (778)
T ss_dssp             HHHHHHHHH-HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHH-hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence            999999996 33333334421  24999999999983 2111            23778999999999987410 12478


Q ss_pred             HHHhc-CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH-HHHhcCCC------ChHHHHHHHhhcChhHHHHHHHHH
Q 038250          301 KFVDM-GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR-GDAYNNSL------IFPVIVKKILRVSDLATEFAVSIL  372 (444)
Q Consensus       301 ~i~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g------~i~~Lv~ll~~~~~~~~~~a~~~L  372 (444)
                      .++++ |+++.|..+|.+++..++..|+.+|.||+.++++. ..+ .+.+      .++.||.++...+...++.|+++|
T Consensus       600 ~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~-~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL  678 (778)
T 3opb_A          600 HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF-FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF  678 (778)
T ss_dssp             HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT-SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH-HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            88985 99999999999989999999999999999988875 355 3222      378999999888999999999999


Q ss_pred             HHHccccccchHHHHHHHHhh-ChHHHHHHHHhc--CCChHHHHHHHHHHHHHHhh
Q 038250          373 WKLCKNEEREEKTAFAEALQV-GAFQKLLLLLQV--GCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       373 ~~L~~~~~~~~~~~~~~~~~~-g~l~~Ll~ll~~--~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .+++..    ++...+.+++. +++..++.+++.  + ++.++.+++.++..+..+
T Consensus       679 AnLts~----~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          679 ANIATT----IPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHH----CHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCC----ChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHh
Confidence            999762    35666777754 899999999999  6 899999999988888853

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=2e-21  Score=184.69  Aligned_cols=185  Identities=11%  Similarity=0.104  Sum_probs=165.2

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHH-HHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAE-AFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      +.+.+..|+..|..++.. .++...+++.|++|+|+. +|.+   +    ++.+++.|+++|..+...++.++..+++.|
T Consensus        53 ~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s---~----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g  124 (296)
T 1xqr_A           53 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA---G----AAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  124 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC---S----SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence            456888999999999975 458888999999999999 9953   2    689999999999966667788999999999


Q ss_pred             cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      +++.|+.+|+++ +..+++.|+++|.+|+.+++...+.+ ...|+++.|+.+|+++ ++.+++.|+|+|.+|+.++.   
T Consensus       125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~-~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~---  199 (296)
T 1xqr_A          125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF-LRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHP---  199 (296)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCG---
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCh---
Confidence            999999999975 78999999999999987777777777 4479999999999998 89999999999999998754   


Q ss_pred             chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  336 (444)
                      +.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+..
T Consensus       200 ~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          200 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            5889999999999999999999999999999999999986

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.1e-20  Score=193.42  Aligned_cols=281  Identities=13%  Similarity=0.130  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      .+..+.+.+...+.+.+.+.+..|++.|..++.+ +..|+.+++. |+++.|+++++..  .    +..+...++.+|. 
T Consensus       331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~--~----d~s~~Ygal~IL~-  402 (778)
T 3opb_A          331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ--K----MTHCLYGLLVIMA-  402 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT--C----CTTHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC--C----CchHHHHHHHHHH-
Confidence            3555666666555545666799999999999875 5678888764 7799999999531  1    4668889999999 


Q ss_pred             hcCCChh---------------------------------------hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 038250          202 LFPLAGE---------------------------------------GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLR  242 (444)
Q Consensus       202 ~l~~~~~---------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~  242 (444)
                      |++.+.+                                       ++..+.++|+||.|+.+++++++.+|+.|+++|.
T Consensus       403 NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~  482 (778)
T 3opb_A          403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIY  482 (778)
T ss_dssp             HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6654211                                       5667889999999999999999999999999999


Q ss_pred             HHHhcchhhHHHhhcccccHHHHHHHhcCCCCh--HHHHHHHHHHHHHhcCCCCCCchhHHHH--h-cCcHHHHHHHhhc
Q 038250          243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP--TATKASLVVVYRTITSASATEKPIQKFV--D-MGLVSLLLEMLVD  317 (444)
Q Consensus       243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~~~~~i~--~-~g~v~~Lv~lL~~  317 (444)
                      +| +.++++|..+ ...|++++|+.+|.++...  ..+..|+.+|.+|+...+    ....+-  . .|+|++|+++|..
T Consensus       483 nL-S~d~~~R~~l-vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n----p~~~f~~~~~~~aI~pLv~LL~~  556 (778)
T 3opb_A          483 NI-TRSKNFIPQL-AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN----PGLIFKKYSALNAIPFLFELLPR  556 (778)
T ss_dssp             HH-HTSGGGHHHH-HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC----HHHHSSSSCSTTHHHHHHHTSCC
T ss_pred             HH-cCCHHHHHHH-HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC----HHHHcCCCccccchHHHHHHcCC
Confidence            99 6789999999 5579999999999987322  279999999999997764    333221  1 3999999999983


Q ss_pred             -cccc-------------hHHHHHHHHHHhcCCh-----hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          318 -AQRS-------------LCEKALSVLDGLCSSD-----YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       318 -~~~~-------------~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                       .+..             .+..|+.+|.|||..+     +.+..++.+.|+++.|+.+|.+.+..+++.|++++.||+.+
T Consensus       557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~  636 (778)
T 3opb_A          557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH  636 (778)
T ss_dssp             SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred             CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence             2211             2679999999999876     34666733359999999999988999999999999999985


Q ss_pred             cccchHHHH-HHHH------hhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          379 EEREEKTAF-AEAL------QVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       379 ~~~~~~~~~-~~~~------~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      .     +.+ +...      ..+.++.|+.+++++ +..+|+.|+++|.++.
T Consensus       637 ~-----e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLt  682 (778)
T 3opb_A          637 P-----LTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIA  682 (778)
T ss_dssp             G-----GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             c-----HHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence            2     222 1222      133588999999998 9999999999999984

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.78  E-value=1.2e-19  Score=138.82  Aligned_cols=77  Identities=30%  Similarity=0.428  Sum_probs=69.9

Q ss_pred             CCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           27 GEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ......++++|.||||+++|+|||+++|||+||+.||++|+.  +..+||.|+.++...++.||..++++|+.|..+++
T Consensus         5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            344567899999999999999999999999999999999993  46799999999998899999999999999998775

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.77  E-value=4.4e-19  Score=139.69  Aligned_cols=76  Identities=30%  Similarity=0.418  Sum_probs=70.3

Q ss_pred             CcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        28 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      .+...+|++|.||||+++|+|||+++|||+||+.||.+||  .+..+||.|+.++...++.||..++++|+.|..+++
T Consensus        21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l--~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL--LNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHT--TSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHH--HcCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            4456789999999999999999999999999999999999  457899999999999999999999999999998875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.77  E-value=5.6e-19  Score=138.57  Aligned_cols=78  Identities=31%  Similarity=0.429  Sum_probs=70.8

Q ss_pred             CCcCCCCCCccccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           27 GEMELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ......+|++|.||||+++|+|||+++|| |+||+.||++||  ....+||.|++++...++.||..++++|+.|+.+++
T Consensus        13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l--~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   90 (98)
T 1wgm_A           13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL--LSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT--TTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHH--HhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence            34456789999999999999999999999 999999999999  346799999999999999999999999999998875


Q ss_pred             c
Q 038250          106 S  106 (444)
Q Consensus       106 ~  106 (444)
                      .
T Consensus        91 ~   91 (98)
T 1wgm_A           91 Q   91 (98)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.72  E-value=3.4e-18  Score=129.07  Aligned_cols=74  Identities=46%  Similarity=0.895  Sum_probs=68.5

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ..++++|.||||+++|.+||+++|||+||+.||.+|+ ..+...||.|+..+...++.+|..++++|+.|..+++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~-~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~   76 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH-HHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence            4578899999999999999999999999999999999 5567899999999998899999999999999998775

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=1.5e-15  Score=154.51  Aligned_cols=289  Identities=12%  Similarity=0.129  Sum_probs=217.1

Q ss_pred             CCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHH
Q 038250          117 IPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEIL  196 (444)
Q Consensus       117 ~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~  196 (444)
                      ++...+.|+.|...|+++.   -.+.++.|+..|+.++++   ++..+. .++++.|+..|+..  .   +|.++...++
T Consensus        16 ~qs~~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d--~---~D~e~v~~~L   83 (651)
T 3grl_A           16 QHTEAETIQKLCDRVASST---LLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTD--R---SDSEIIGYAL   83 (651)
T ss_dssp             --CHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSC--T---TCHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcc--c---ccHHHHHHHH
Confidence            3334678999999998875   678999999999999864   454444 55689999999643  2   3788999999


Q ss_pred             HHHHhhcCCChh-----------------hhhh-cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhc
Q 038250          197 STLTLLFPLAGE-----------------GLTY-LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLD  257 (444)
Q Consensus       197 ~~L~~~l~~~~~-----------------~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~  257 (444)
                      .+|..+++.+++                 +... +.+.+.|+.|+.+|++.+-.+|..++..|..|+...++ +.+.|..
T Consensus        84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~  163 (651)
T 3grl_A           84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV  163 (651)
T ss_dssp             HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence            999745554432                 1112 24678899999999999999999999999999877776 8888866


Q ss_pred             ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH-hcCcHHHHHHHhhcc----ccchHHHHHHHHHH
Q 038250          258 IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV-DMGLVSLLLEMLVDA----QRSLCEKALSVLDG  332 (444)
Q Consensus       258 ~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~-~~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~  332 (444)
                      ..++|+.||.+|.+. ...++..++..|.+|+.++.    +.++++ -+|+++.|+.++...    ...+++.|+.+|.+
T Consensus       164 ~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~----~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n  238 (651)
T 3grl_A          164 SPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNG----AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN  238 (651)
T ss_dssp             STTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCH----HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCH----HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence            779999999999988 68899999999999999987    555555 479999999999853    33688999999999


Q ss_pred             hcCChhhHHHHhcCCCChHHHHHHHhhcCh------hHHHH---HHHHHHHHcccccc--chHHHHHHHHhhChHHHHHH
Q 038250          333 LCSSDYGRGDAYNNSLIFPVIVKKILRVSD------LATEF---AVSILWKLCKNEER--EEKTAFAEALQVGAFQKLLL  401 (444)
Q Consensus       333 L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------~~~~~---a~~~L~~L~~~~~~--~~~~~~~~~~~~g~l~~Ll~  401 (444)
                      |...+...+.++.+.|+++.|..++....+      ....+   +..++..|+..+..  ++..+...+.+.|++..|++
T Consensus       239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~  318 (651)
T 3grl_A          239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT  318 (651)
T ss_dssp             HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence            998665444444999999999998864321      12233   55666666654221  13455666679999999999


Q ss_pred             HHhcCC-ChHHHHHHHHHHHHH
Q 038250          402 LLQVGC-ADKTKEHVSELLKLL  422 (444)
Q Consensus       402 ll~~~~-~~~~k~~a~~ll~~l  422 (444)
                      ++.+.. ...++..|...+..+
T Consensus       319 ll~~~~~p~~i~~~Al~tla~~  340 (651)
T 3grl_A          319 ILMATGVPADILTETINTVSEV  340 (651)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HHccCCCCHHHHHHHHHHHHHH
Confidence            887653 456776666655443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.69  E-value=1.7e-17  Score=143.42  Aligned_cols=75  Identities=33%  Similarity=0.520  Sum_probs=68.3

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ...+|++|.||||+++|.|||+++|||+||+.||.+|+. .+..+||.|+.++...++.||..++++|+.|+..++
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~-~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHH-hCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence            567899999999999999999999999999999999994 433479999999998899999999999999998875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=124.62  Aligned_cols=75  Identities=25%  Similarity=0.505  Sum_probs=64.8

Q ss_pred             CCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhc----CCCCCCC--CCcc-cCCCCCCccHHHHHHHHHHHHh
Q 038250           32 TTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHED----GNITCPV--TNRV-LTSFEPIPNHTIRRMIQDWCVE  103 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~----~~~~CP~--c~~~-~~~~~l~~n~~l~~~i~~~~~~  103 (444)
                      ..+++|.||||+++|.|||+++ |||+||+.||.+||...    +..+||.  |+.. +...++.||..|+++|+.|..+
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3467899999999999999995 99999999999999532    2578999  7666 7788999999999999999987


Q ss_pred             ccc
Q 038250          104 NRS  106 (444)
Q Consensus       104 ~~~  106 (444)
                      +..
T Consensus        83 ~~r   85 (94)
T 2yu4_A           83 RHR   85 (94)
T ss_dssp             CCS
T ss_pred             hcc
Confidence            753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-16  Score=122.67  Aligned_cols=77  Identities=25%  Similarity=0.398  Sum_probs=68.2

Q ss_pred             cCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCccc-CCCCCCccHHHHHHHHHHHHhcc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVL-TSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~-~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ....+++++.||||.++|.+|++++ |||+||+.||.+|+...+...||.|+..+ ....+.+|..++++++.|...++
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            3456788999999999999999999 99999999999999555668999999997 56689999999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.61  E-value=2.7e-16  Score=148.79  Aligned_cols=76  Identities=33%  Similarity=0.521  Sum_probs=68.7

Q ss_pred             cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ....+|++|.||||.++|.|||+++||||||+.||.+|+ ..+..+||.|+.+++..++.||..++++|+.|+..++
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~-~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL-QRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH-HHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHH-HHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence            345678899999999999999999999999999999999 4555569999999998899999999999999998774

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.56  E-value=3.7e-13  Score=136.99  Aligned_cols=284  Identities=11%  Similarity=0.078  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc-----------------cchhH-hhcCchHHHHHHHHhhccc
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR-----------------NKRCI-VDNGAVSVLAEAFETFSKT  183 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------~~~~i-~~~G~i~~Lv~lL~~~~~~  183 (444)
                      ..++.++..|...-  .|.+....++..|..+...++.                 +.+.+ .+.+.|+.|+.+|++.   
T Consensus        60 ~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~---  134 (651)
T 3grl_A           60 QAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF---  134 (651)
T ss_dssp             HTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC---
T ss_pred             hhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc---
Confidence            34667777776652  5788888899999776543322                 11222 3568899999999532   


Q ss_pred             ccccchHHHHHHHHHHHhhcCCChh-hhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250          184 CLDENVSVLEEILSTLTLLFPLAGE-GLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA  261 (444)
Q Consensus       184 ~~~~~~~~~~~a~~~L~~~l~~~~~-~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~  261 (444)
                          +..++..++..|..++...++ +++.|. ..++|+.|+.+|++....+|..|+.+|.+|+..+.+..+.+ ...|+
T Consensus       135 ----df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklV-AFEna  209 (651)
T 3grl_A          135 ----DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIV-AFENA  209 (651)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTH
T ss_pred             ----cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhcc
Confidence                688999999999977776666 777777 56999999999999999999999999999988888888888 55799


Q ss_pred             HHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccc------hHHH---HHHH
Q 038250          262 IEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS------LCEK---ALSV  329 (444)
Q Consensus       262 i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------~~~~---a~~~  329 (444)
                      ++.|+.+++...   .-.++..++.+|.||..++.   .|+..+.+.|+++.|..+|..+++.      ...+   ++.+
T Consensus       210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~---sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~i  286 (651)
T 3grl_A          210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN---SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL  286 (651)
T ss_dssp             HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH---HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Confidence            999999998652   13688999999999999875   6999999999999999999754321      2233   7777


Q ss_pred             HHHhcCCh-------hhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhh-------
Q 038250          330 LDGLCSSD-------YGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQV-------  393 (444)
Q Consensus       330 L~~L~~~~-------~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~-------  393 (444)
                      +..|+..+       .++..+ .+.|+++.|++++...  ...++..|+.++..+.+.    +........+.       
T Consensus       287 IrlLv~~~~~~~~t~~nQ~~~-~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg----N~~~Q~~fa~~~vp~~~~  361 (651)
T 3grl_A          287 VRVLVSPNNPPGATSSCQKAM-FQCGLLQQLCTILMATGVPADILTETINTVSEVIRG----CQVNQDYFASVNAPSNPP  361 (651)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHH-HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHCEESSSSC
T ss_pred             HHHHhCCCCCCCCCHHHHHHH-HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC----CHHHHHHHhhccCCCCCC
Confidence            77777642       245556 8899999999998865  667889999999999984    34444443332       


Q ss_pred             --ChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          394 --GAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       394 --g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                        -++..|+.++.+.....+|-.|...++.+-
T Consensus       362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence              233334444555545677766666666553

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.52  E-value=6.8e-15  Score=121.24  Aligned_cols=71  Identities=13%  Similarity=0.279  Sum_probs=62.9

Q ss_pred             CCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC-CCCCccHHHHHHHHHHHHh
Q 038250           32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS-FEPIPNHTIRRMIQDWCVE  103 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~-~~l~~n~~l~~~i~~~~~~  103 (444)
                      .+++++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+.. ..+.+|..+.++++.|...
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSF-RAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHH-HTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHH-hHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            346679999999999999999999999999999999 4566799999999987 6899999999999887643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.48  E-value=8.5e-15  Score=115.64  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      .+++++.||||.+.|.+|+++ +|||+||+.||.+|+  .....||.|+..+...++.+|..++++++.|.....
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL--SYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH--TTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHH--HCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            456679999999999999998 899999999999999  456799999999988889999999999999987764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.7e-14  Score=130.38  Aligned_cols=72  Identities=14%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             CCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCC--CCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           33 TPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPV--TNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~--c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ....|+||||+++|++||+. .|||+||+.||.+||...+.+.||+  |++.+...++.||..|+++++.|..+.
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~  252 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE  252 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence            35669999999999999985 9999999999999994335578999  999999899999999999999997754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.48  E-value=2e-14  Score=122.05  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=62.3

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC-CCCccHHHHHHHHHHHH
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPNHTIRRMIQDWCV  102 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~-~l~~n~~l~~~i~~~~~  102 (444)
                      +++++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+... .+.+|..++++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSF-KAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHH-HTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHH-HhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            45668999999999999999999999999999999 55667899999999877 89999999999998764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=102.95  Aligned_cols=64  Identities=25%  Similarity=0.343  Sum_probs=52.0

Q ss_pred             CCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCC-CCCcc
Q 038250           27 GEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPN   90 (444)
Q Consensus        27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~-~l~~n   90 (444)
                      ......+++++.||||+++|.+|++++ |||+||+.||.+|+...+...||.|++.+... .+.+|
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            344566788999999999999999998 99999999999999545557999999875433 34443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.44  E-value=2.9e-14  Score=112.62  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             CCCCCCccccccccccCcCcee-cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           30 ELTTPNHFRCPISLDLMKDPVT-LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ...+.+++.||||+++|.+|++ ++|||+||+.||.+|+ ......||.|+..+...++.++..+..+++.+...+
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWL-TEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-HHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHH-HHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            3456778999999999999999 8999999999999999 444478999999998888888888888887776554

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.41  E-value=1.1e-13  Score=111.11  Aligned_cols=69  Identities=12%  Similarity=0.272  Sum_probs=60.3

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC----CCCccHHHHHHHHHHHH
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSF----EPIPNHTIRRMIQDWCV  102 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~----~l~~n~~l~~~i~~~~~  102 (444)
                      .+++++.||||.+.|.+|+++ +|||+||+.||.+|+  .....||.|+..+...    .+.+|..+.++++.|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH--TSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH--HhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            457789999999999999998 999999999999999  4458999999998765    67889999999887653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.7e-13  Score=98.35  Aligned_cols=57  Identities=9%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP   87 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l   87 (444)
                      ...+++.+.||||.+.+.+|++++|||+||+.||.+|+ ..+...||.|+..+...++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALL-SSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHH-TTSSCCCTTTCCCCCTTTC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHH-HhCcCCCCCCCcCCChhhc
Confidence            34567789999999999999999999999999999999 4566789999998876543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.40  E-value=1e-14  Score=110.08  Aligned_cols=66  Identities=24%  Similarity=0.415  Sum_probs=54.9

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-----CCCCCCCCCcccCCCCCCccHHHHH
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-----GNITCPVTNRVLTSFEPIPNHTIRR   95 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-----~~~~CP~c~~~~~~~~l~~n~~l~~   95 (444)
                      ...+++++.||||.+.|.+|++++|||+||+.||.+|+...     +...||.|+..+...++.+|..+++
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            44567889999999999999999999999999999999321     2678999999998777777765543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.6e-13  Score=102.00  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=52.4

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHH
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRR   95 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~   95 (444)
                      .....+.+.||||.+.|.+|++++|||+||+.||.+|+  +....||.|+..+. ..+.+|..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~-~~~~~~~~l~~   71 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF--RATPRCYICDQPTG-GIFNPAKELMA   71 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH--HHCSBCSSSCCBCC-SCCEECHHHHH
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH--HCCCcCCCcCcccc-ccCCcHHHHHH
Confidence            34556678999999999999999999999999999999  34678999999986 56777754433

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.39  E-value=1.8e-13  Score=111.64  Aligned_cols=75  Identities=25%  Similarity=0.465  Sum_probs=65.4

Q ss_pred             cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ....+++++.||||.+.|.+|++++|||+||+.||.+|+ ..+...||.|+..+...++.++..+.+.+..+....
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C   85 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSI-RDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC   85 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred             hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHH-hhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeEC
Confidence            445778889999999999999999999999999999999 444558999999998888889999999988766554

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=5.5e-14  Score=107.62  Aligned_cols=66  Identities=24%  Similarity=0.380  Sum_probs=56.0

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc----CCCCCCCCCcccCCCCCCccHHHHH
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED----GNITCPVTNRVLTSFEPIPNHTIRR   95 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~----~~~~CP~c~~~~~~~~l~~n~~l~~   95 (444)
                      ...+++++.||||.+.+.+|++++|||+||+.|+.+|+...    +...||.|+..+...++.+|..+++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            44577889999999999999999999999999999999442    3679999999998888887765544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.3e-13  Score=99.73  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             cCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      ....+++++.||||++.|.+|+++ +|||+||+.||.+|+  +....||.|+..+...++.++
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF--YYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH--HHCSSCTTTCCCCCSSCSCCC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH--HcCCcCCCcCcccCccccccc
Confidence            345678889999999999999997 999999999999999  336789999999987766544

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.36  E-value=1.3e-13  Score=112.02  Aligned_cols=70  Identities=21%  Similarity=0.444  Sum_probs=59.9

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC-------CCCCccHHHHHHHHHHH
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS-------FEPIPNHTIRRMIQDWC  101 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~-------~~l~~n~~l~~~i~~~~  101 (444)
                      ....+++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+..       ..+..|..+..+++.|.
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            3456679999999999999999999999999999999 5557899999998863       46777888888887765

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8.6e-14  Score=106.50  Aligned_cols=66  Identities=21%  Similarity=0.466  Sum_probs=56.0

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh----cCCCCCCCCCcccCCCCCCccHHHHH
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE----DGNITCPVTNRVLTSFEPIPNHTIRR   95 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~----~~~~~CP~c~~~~~~~~l~~n~~l~~   95 (444)
                      ...+++.+.||||.+.+.+|++++|||+||+.|+.+|+..    .+...||.|+..+...++.+|..+++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            4456778999999999999999999999999999999943    24689999999998888877765543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.36  E-value=1.1e-13  Score=112.74  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=63.1

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      .+.+++.||||.++|.+|+++ +|||+||+.||.+|+ .   ..||.|+..+...++.+|..+.++++.+.....
T Consensus        18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-G---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-T---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-c---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence            456779999999999999999 999999999999999 2   789999999988889999999999998877653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.34  E-value=7.1e-11  Score=106.13  Aligned_cols=189  Identities=17%  Similarity=0.139  Sum_probs=153.4

Q ss_pred             cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250          167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS  246 (444)
Q Consensus       167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s  246 (444)
                      .+.++.|+.+|.   ++    +..++..|+..|.. +          ...++++.|+.+|.++++.++..|+.+|..+ .
T Consensus        18 ~~~~~~L~~~L~---~~----~~~vR~~A~~~L~~-~----------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQ---DD----SYYVRRAAAYALGK-I----------GDERAVEPLIKALKDEDAWVRRAAADALGQI-G   78 (211)
T ss_dssp             GGGHHHHHHHTT---CS----SHHHHHHHHHHHHH-H----------CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHH-C
T ss_pred             HhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-h----------CCccHHHHHHHHHcCCCHHHHHHHHHHHHhh-C
Confidence            457899999994   22    68999999999983 2          2247899999999999999999999999988 2


Q ss_pred             cchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250          247 SDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA  326 (444)
Q Consensus       247 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a  326 (444)
                      .           .+.++.|+.+|.++ ++.++..|+++|..+..              .++++.|+++|.+++..++..|
T Consensus        79 ~-----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a  132 (211)
T 3ltm_A           79 D-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD--------------ERAVEPLIKALKDEDWFVRIAA  132 (211)
T ss_dssp             C-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHhCCCHHHHHHH
Confidence            1           35689999999888 89999999999988842              1478999999999999999999


Q ss_pred             HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      +.+|..+..           ...++.|+.++.+.++.++..|+.+|..+..               ..+++.|..+++..
T Consensus       133 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~  186 (211)
T 3ltm_A          133 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG  186 (211)
T ss_dssp             HHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred             HHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence            999998843           3578889998877788999999999998865               35678889999887


Q ss_pred             CChHHHHHHHHHHHHHHhhcc
Q 038250          407 CADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       407 ~~~~~k~~a~~ll~~l~~~~~  427 (444)
                       ++.+|..|...|..+.....
T Consensus       187 -~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          187 -TGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             -CHHHHHHHHHHHHC------
T ss_pred             -CHHHHHHHHHHHHhcCCCCC
Confidence             89999999998888875544

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.34  E-value=2e-13  Score=96.69  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=47.7

Q ss_pred             ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccH
Q 038250           36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH   91 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~   91 (444)
                      .|.||||+++|.|||++ +|||+||+.||++|+..  +.+||.+++++...++.|+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChhhcEECc
Confidence            48999999999999999 99999999999999943  34699999999988888764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.33  E-value=4.2e-13  Score=116.26  Aligned_cols=71  Identities=21%  Similarity=0.379  Sum_probs=61.0

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC-CCCCCccHHHHHHHHHHHHh
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT-SFEPIPNHTIRRMIQDWCVE  103 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~-~~~l~~n~~l~~~i~~~~~~  103 (444)
                      .+.+.+.||||.+.|.+|+++ +|||+||+.||.+|+ ..+...||.|+..+. ...+.+|..+.++|..+...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITAL-RSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-HTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHH-HhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            456678999999999999998 999999999999999 556789999999985 45689999999999888654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.32  E-value=1.9e-10  Score=108.16  Aligned_cols=223  Identities=12%  Similarity=-0.033  Sum_probs=149.7

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ++.++..|.+.    +...+..|+..|..+..           .++++.|+.+|.+   .    ++.++..|+.+|. .+
T Consensus        25 i~~L~~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d---~----~~~vR~~A~~aL~-~l   81 (280)
T 1oyz_A           25 DDELFRLLDDH----NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSD---K----NYIRRDIGAFILG-QI   81 (280)
T ss_dssp             HHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTC---S----SHHHHHHHHHHHH-HS
T ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcC---C----CHHHHHHHHHHHH-Hh
Confidence            56677777654    78889999999998852           2468889999942   2    5889999999998 44


Q ss_pred             CCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          204 PLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ...+...     ...++.|.. ++++.++.++..|+++|.++...++..      ...+++.|+.+++++ ++.++..|+
T Consensus        82 ~~~~~~~-----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~------~~~~~~~L~~~l~d~-~~~vR~~a~  149 (280)
T 1oyz_A           82 KICKKCE-----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY------SPKIVEQSQITAFDK-STNVRRATA  149 (280)
T ss_dssp             CCCTTTH-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG------HHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             ccccccc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc------cHHHHHHHHHHhhCC-CHHHHHHHH
Confidence            4322211     012344442 356678999999999999994333211      134578888888887 788888888


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      .+|.++..              .++++.|+.+|.+.+..++..|+.+|..+...         ...+++.|+.++.+.+.
T Consensus       150 ~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~  206 (280)
T 1oyz_A          150 FAISVIND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNE  206 (280)
T ss_dssp             HHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCH
T ss_pred             HHHHhcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCH
Confidence            88876532              13788888888888888888888888887431         12345677777766677


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      .++..|+.+|..+..               ..+++.|+.++... +  ++..|+..|..+
T Consensus       207 ~vR~~A~~aL~~~~~---------------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          207 EVRIEAIIGLSYRKD---------------KRVLSVLCDELKKN-T--VYDDIIEAAGEL  248 (280)
T ss_dssp             HHHHHHHHHHHHTTC---------------GGGHHHHHHHHTSS-S--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC---------------HhhHHHHHHHhcCc-c--HHHHHHHHHHhc
Confidence            788888888877653               24555556655543 2  444444444443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.31  E-value=7.1e-13  Score=111.16  Aligned_cols=63  Identities=21%  Similarity=0.441  Sum_probs=50.7

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW  100 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~  100 (444)
                      ++++.||||.+.|.+||+++|||+||..||.+|+  .....||.|+.++....  .+..+...++.+
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~--~~~~~~~~i~~~  113 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSKT--YSLVLDNCINKM  113 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT--TTCSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHH--HcCCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence            4568999999999999999999999999999999  55678999999886432  344455555443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=96.15  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=49.3

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVTNRVLTSFEP   87 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~~l   87 (444)
                      ...+++++.||||.+.+.+|++++|||+||+.|+.+|+.. .+...||.|+..+...++
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            4567788999999999999999999999999999999931 245789999998876543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.31  E-value=6.2e-13  Score=107.42  Aligned_cols=70  Identities=19%  Similarity=0.416  Sum_probs=57.5

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-CCCCCCCCCcccCCCCCCccHHHHHHHHHHHH
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-GNITCPVTNRVLTSFEPIPNHTIRRMIQDWCV  102 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~  102 (444)
                      +.+.+.||||.+.+.+|++++|||+||+.||.+|+... +...||.|+..+...++.+|..+.++++.+..
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999322 33689999999988888887666666665554

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=91.65  Aligned_cols=49  Identities=27%  Similarity=0.527  Sum_probs=42.8

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-CCCCCCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-GNITCPVT   78 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c   78 (444)
                      ...+++++.||||.+.+.+|++++|||+||+.||.+|+... +...||.|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45677889999999999999999999999999999999422 45789987

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.28  E-value=4.4e-10  Score=100.10  Aligned_cols=189  Identities=20%  Similarity=0.129  Sum_probs=154.2

Q ss_pred             CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250          118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS  197 (444)
Q Consensus       118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~  197 (444)
                      +..++....+++.|.+.    +...+..|+..|..+..           .++++.|+.+|.   ++    ++.++..|+.
T Consensus        10 ~~~~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~   67 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAAD   67 (201)
T ss_dssp             CCCHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----SHHHHHHHHH
T ss_pred             ccCCcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc---CC----CHHHHHHHHH
Confidence            34567778889988876    88999999999998753           247899999994   22    6889999999


Q ss_pred             HHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250          198 TLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA  277 (444)
Q Consensus       198 ~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~  277 (444)
                      +|.. +          ...++++.|+.+|.+.++.++..|+++|..+ ..           ..+++.|+.+|+++ ++.+
T Consensus        68 ~L~~-~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~-~~~v  123 (201)
T 3ltj_A           68 ALGQ-I----------GDERAVEPLIKALKDEDGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDE-DWFV  123 (201)
T ss_dssp             HHHH-H----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCS-SHHH
T ss_pred             HHHh-h----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHcCC-CHHH
Confidence            9983 2          2246799999999999999999999999988 22           24678899999888 8999


Q ss_pred             HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250          278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI  357 (444)
Q Consensus       278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll  357 (444)
                      +..|+++|..+..              .++++.|+.+|.+.++.++..|+.+|..+..           ..+++.|..++
T Consensus       124 r~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l  178 (201)
T 3ltj_A          124 RIAAAFALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLA  178 (201)
T ss_dssp             HHHHHHHHHHHTC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHH
Confidence            9999999998842              2478999999999999999999999999842           23577888888


Q ss_pred             hhcChhHHHHHHHHHHHHcc
Q 038250          358 LRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       358 ~~~~~~~~~~a~~~L~~L~~  377 (444)
                      .+.++.++..|..+|..+..
T Consensus       179 ~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          179 ETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHCCHHHHHHHHHHHHHCC-
T ss_pred             hCCCHHHHHHHHHHHHHHHh
Confidence            88899999999999988754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.27  E-value=2.7e-10  Score=101.52  Aligned_cols=185  Identities=17%  Similarity=0.130  Sum_probs=152.6

Q ss_pred             cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250          167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS  246 (444)
Q Consensus       167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s  246 (444)
                      .+..+.++++|++   +    ++.++..|+.+|.. +.          ..++++.|+.+|.++++.++..|+.+|..+ .
T Consensus        13 ~~~~~~~i~~L~~---~----~~~vr~~A~~~L~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~-~   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQD---D----SYYVRRAAAYALGK-IG----------DERAVEPLIKALKDEDAWVRRAAADALGQI-G   73 (201)
T ss_dssp             HHHHHHHHHHTTC---S----CHHHHHHHHHHHHH-HC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-C
T ss_pred             CcchHHHHHHhcC---C----CHHHHHHHHHHHHh-cC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh-C
Confidence            4567889999943   3    68999999999983 22          246799999999999999999999999988 2


Q ss_pred             cchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250          247 SDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA  326 (444)
Q Consensus       247 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a  326 (444)
                      .           .++++.|+.+|.++ ++.++..|+++|..+...              .+++.|+.+|.+.++.++..|
T Consensus        74 ~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~--------------~~~~~L~~~l~d~~~~vr~~a  127 (201)
T 3ltj_A           74 D-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGDE--------------RAVEPLIKALKDEDWFVRIAA  127 (201)
T ss_dssp             C-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG--------------GGHHHHHHHTTCSSHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcH--------------HHHHHHHHHHcCCCHHHHHHH
Confidence            1           25688999999987 899999999999987421              378999999999999999999


Q ss_pred             HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250          327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG  406 (444)
Q Consensus       327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~  406 (444)
                      +.+|..+..           ...++.|+.++.+.+..++..|+.+|..+..               ..+++.|..+++..
T Consensus       128 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~~~~~~L~~~l~d~  181 (201)
T 3ltj_A          128 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG  181 (201)
T ss_dssp             HHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred             HHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence            999998743           4678889998887888999999999998854               24678888889887


Q ss_pred             CChHHHHHHHHHHHHHH
Q 038250          407 CADKTKEHVSELLKLLN  423 (444)
Q Consensus       407 ~~~~~k~~a~~ll~~l~  423 (444)
                       ++.+|..|...|..+.
T Consensus       182 -~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          182 -TGFARKVAVNYLETHK  197 (201)
T ss_dssp             -CHHHHHHHHHHHHHCC
T ss_pred             -CHHHHHHHHHHHHHHH
Confidence             8999999998887654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.27  E-value=2.3e-12  Score=93.13  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             Cccccccccc-cCcCc----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           35 NHFRCPISLD-LMKDP----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        35 ~~~~Cpic~~-~~~~P----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      +++.||||.+ .+.+|    ++++|||+||+.||.+|+ .++...||.|+..+...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHH-HTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHH-HcCCCcCCCCCCccccccceee
Confidence            4689999999 99999    467999999999999998 4667889999999987776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.27  E-value=2.6e-10  Score=102.41  Aligned_cols=189  Identities=19%  Similarity=0.112  Sum_probs=152.2

Q ss_pred             ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      +++.++.++..|.+.    +...+..|+..|..+..           .++++.|+.+|.   ++    +..++..|+.+|
T Consensus        17 ~~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~aL   74 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAADAL   74 (211)
T ss_dssp             CGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----CHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc---CC----CHHHHHHHHHHH
Confidence            356788888888765    88899999999988753           247899999994   22    688999999999


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      .. +.          ..++++.|+.+|.+.++.++..|+.+|..+ ..           .+.++.|+.+++++ ++.++.
T Consensus        75 ~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~-~~~vr~  130 (211)
T 3ltm_A           75 GQ-IG----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDE-DWFVRI  130 (211)
T ss_dssp             HH-HC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCS-SHHHHH
T ss_pred             Hh-hC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHhCC-CHHHHH
Confidence            83 32          356799999999999999999999999988 22           25688999999888 899999


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      .|+.+|.++..              ..+++.|+.+|.+.++.++..|+.+|..+..           ..+++.|..++..
T Consensus       131 ~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d  185 (211)
T 3ltm_A          131 AAAFALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET  185 (211)
T ss_dssp             HHHHHHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC
Confidence            99999999832              1378999999998899999999999999853           3456788888888


Q ss_pred             cChhHHHHHHHHHHHHcccc
Q 038250          360 VSDLATEFAVSILWKLCKNE  379 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~  379 (444)
                      .++.++..|..+|..+....
T Consensus       186 ~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          186 GTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             CCHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHhcCCCC
Confidence            89999999999999988753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.25  E-value=2.7e-12  Score=111.74  Aligned_cols=75  Identities=25%  Similarity=0.465  Sum_probs=64.4

Q ss_pred             cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      ....+++.|.||||.++|.+||+++|||+||+.||.+|+ ..+...||.|+..+...++.++..+.+.+..+....
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C   85 (170)
T 3hcs_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSI-RDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC   85 (170)
T ss_dssp             ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred             hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHH-HhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCC
Confidence            345678899999999999999999999999999999999 444568999999998888889998888887654443

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.25  E-value=1.7e-12  Score=105.48  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=57.6

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCC-ccHHHHHHHHHHHH
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI-PNHTIRRMIQDWCV  102 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~-~n~~l~~~i~~~~~  102 (444)
                      ..+++++.||||.+.|.+|++++|||+||+.||.+|+ ..+...||.|+..+...++. ++..+.+++..+..
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v   89 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCL-KVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV   89 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred             HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHH-hHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence            3456779999999999999999999999999999999 44567899999999876643 45666666655444

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.25  E-value=6.4e-13  Score=111.40  Aligned_cols=73  Identities=14%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC---------CCCCCccHHHHHHHHHHH
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT---------SFEPIPNHTIRRMIQDWC  101 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~---------~~~l~~n~~l~~~i~~~~  101 (444)
                      ..+++.|.||||.++|.+||+++|||+||+.||.+|+ ..+...||.|+.++.         ...+.++..+++.+..+.
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~  104 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASIL-SSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP  104 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHG-GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHH-hcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence            4678889999999999999999999999999999999 556678999998643         224568888888886654


Q ss_pred             Hhc
Q 038250          102 VEN  104 (444)
Q Consensus       102 ~~~  104 (444)
                      ...
T Consensus       105 v~C  107 (141)
T 3knv_A          105 AVC  107 (141)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=5.7e-12  Score=92.74  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=45.2

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ....+.+.|+||++.+.+|++++|||+||+.||.+|+  .....||.|+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS--WLGKRCALCRQEIPE   61 (71)
T ss_dssp             CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT--TCSSBCSSSCCBCCH
T ss_pred             ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH--HCCCcCcCcCchhCH
Confidence            3345678999999999999999999999999999999  445789999988764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.22  E-value=1e-09  Score=103.11  Aligned_cols=223  Identities=10%  Similarity=-0.006  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHh--hcccccccchHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFET--FSKTCLDENVSVLEEILST  198 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~~~~~~~~a~~~  198 (444)
                      +..++.++..|.+.    +...+..|+..|..+.....          .++.++.+|.+  .++.    ++.++..|+.+
T Consensus        53 ~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~----------~~~~l~~~L~~~~~~d~----~~~vr~~a~~a  114 (280)
T 1oyz_A           53 QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKK----------CEDNVFNILNNMALNDK----SACVRATAIES  114 (280)
T ss_dssp             HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTT----------THHHHHHHHHHHHHHCS----CHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccc----------cchHHHHHHHHHHhcCC----CHHHHHHHHHH
Confidence            34566677766654    78889999999988753221          23444444421  1222    68899999999


Q ss_pred             HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      |..+...++.     ....+++.|+.+|.+.++.++..|+.+|.++. .           .++++.|+.+++++ ++.++
T Consensus       115 L~~l~~~~~~-----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~-~~~vr  176 (280)
T 1oyz_A          115 TAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-D-----------KATIPLLINLLKDP-NGDVR  176 (280)
T ss_dssp             HHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCS-SHHHH
T ss_pred             HHHHhccCCc-----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-C-----------HHHHHHHHHHHcCC-CHHHH
Confidence            9832211111     12356899999999999999999999999872 2           25789999999988 79999


Q ss_pred             HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250          279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      ..|+++|..+....            ..+++.|+.+|.+.+..++..|+.+|..+.           +..+++.|++.+.
T Consensus       177 ~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~  233 (280)
T 1oyz_A          177 NWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELK  233 (280)
T ss_dssp             HHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHT
T ss_pred             HHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhc
Confidence            99999999885322            146789999999999999999999999875           3467889999886


Q ss_pred             hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250          359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELL  419 (444)
Q Consensus       359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll  419 (444)
                      +.  .++..|+.+|..+..               ..+++.|..+++...++.....+...+
T Consensus       234 d~--~vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l  277 (280)
T 1oyz_A          234 KN--TVYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL  277 (280)
T ss_dssp             SS--SCCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             Cc--cHHHHHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence            53  378888888888765               367899999998765667766665544

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=87.07  Aligned_cols=49  Identities=22%  Similarity=0.608  Sum_probs=42.3

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVT   78 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c   78 (444)
                      ...+++.+.||||.+.+.+|++++|||+||+.||.+|+.. .....||.|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4456778999999999999999999999999999999732 256789987

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.20  E-value=3.7e-12  Score=93.77  Aligned_cols=57  Identities=18%  Similarity=0.346  Sum_probs=48.7

Q ss_pred             CCCCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           32 TTPNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      ...+++.||||.+.+.+|       ++++|||+||+.||.+|+  +....||.|+..+...++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH--HHCSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH--HcCCCCCCCCCccChhheeec
Confidence            345678999999999998       888999999999999999  344689999999987776654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.1e-11  Score=93.71  Aligned_cols=57  Identities=21%  Similarity=0.425  Sum_probs=48.3

Q ss_pred             cCCCCCCccccccccccCcC----ceecCCcchhcHHHHHHHHHhc-CCCCCCCCCcccCCC
Q 038250           29 MELTTPNHFRCPISLDLMKD----PVTLSTGITYDRENIEKWIHED-GNITCPVTNRVLTSF   85 (444)
Q Consensus        29 ~~~~~~~~~~Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~~~   85 (444)
                      ....+.+.+.||||.+.|.+    |++++|||+||+.|+.+|+... +...||.|+..+...
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            34567778999999999999    9999999999999999999432 257899999987654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.5e-11  Score=89.85  Aligned_cols=53  Identities=19%  Similarity=0.414  Sum_probs=45.4

Q ss_pred             CCCCCCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           30 ELTTPNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ....++.+.|+||++.+.+|       +.++|||+||..||.+|+.  ....||.|+..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccCc
Confidence            34556779999999999998       8889999999999999993  36789999988753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.13  E-value=5.1e-11  Score=88.78  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             CCCCCccccccccccCc--CceecC--CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250           31 LTTPNHFRCPISLDLMK--DPVTLS--TGITYDRENIEKWIHEDGNITCPVTNRVLTSFE   86 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~--~Pv~~~--cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~   86 (444)
                      ...++++.||||.+.+.  +++.++  |||+||+.|+.+++ ..+.+.||.||+.+....
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~-~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT-TSSCSBCTTTCCBCSSCS
T ss_pred             cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH-hcCCCCCCCCCCccCCCc
Confidence            34677899999999884  556655  99999999999998 556789999999887654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.12  E-value=4.2e-11  Score=89.79  Aligned_cols=59  Identities=20%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             CCCCCCccccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           30 ELTTPNHFRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      .....+.+.|+||++.|.+|   +.++|||.||+.||.+|+  +....||.|+..+...++.++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL--EQHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH--TTTCSCTTTCCCCCCSCSCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH--HcCCcCcCcCCccCCcccCCC
Confidence            44556778999999999877   445999999999999999  455799999999887655443

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.10  E-value=1.5e-11  Score=88.44  Aligned_cols=53  Identities=19%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             CccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           35 NHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        35 ~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      +++.||||.+.+.+|       +.++|||+||..|+.+|+.  ....||.|+..+...++.+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~   61 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRYHP   61 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH--HCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH--cCCCCCCCCccCCccceee
Confidence            457999999999998       7889999999999999993  3678999999988766544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.09  E-value=1.8e-09  Score=114.44  Aligned_cols=193  Identities=12%  Similarity=0.044  Sum_probs=141.8

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK-LIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      .|.++++.|++.++..|..|+.+|.+|+ .++..+..+ ...|+|.+++. +|.++ +.+++..|+++|+||+.+..  .
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~-~~~~~~~l~-~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g--~  109 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIV-QDAKCRKLL-LREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEE--A  109 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHT-TSHHHHHHH-HHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSC--H
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHH-cCcHHHHHH-HHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcC--c
Confidence            4556778899999999999999999995 577777777 45688877654 67766 89999999999999998753  3


Q ss_pred             chhHHHHhcCcHHHHHHHhhccc---------------------cchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHH
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQ---------------------RSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIV  354 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv  354 (444)
                      +.+..+++.|++++|+.+|....                     ..+.+.++.+|++||..++ ....+ ...++++.|+
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v-~~~~~l~~l~  188 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAV-ATKQTILRLL  188 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HTCHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HhcccHHHHH
Confidence            47888999999999999986311                     1244678899999986444 44455 7789999999


Q ss_pred             HHHhhc---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChH---HHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          355 KKILRV---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAF---QKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       355 ~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l---~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ..+.+.   ...+...|+.+|..|+..    +.+....+.+.|..   ..++.+.... . ..+..++.+|..+
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~d----n~~~~~~i~~~~~~~~~~~ll~~~~~~-~-~~~~la~giL~Ni  256 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSED----NLKVGQAITDDQETHVYDVLLKLATGT-D-PRAVMACGVLHNV  256 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHTCCSSCHHHHHHHHHHSS-C-TTHHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhcc----CHHHHHHHHhcchHHHHHHHHHHhcCC-c-HHHHHHHHHHHhH
Confidence            998664   356888999999999983    46666666666543   3333333333 3 3344555544443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.07  E-value=2.4e-09  Score=116.47  Aligned_cols=272  Identities=10%  Similarity=0.093  Sum_probs=184.2

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchh--Hh--hcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRC--IV--DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~--i~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      ++.++..+.+    ++...+..|+..|..++.+.+..-..  +.  -.+.++.|+++++   +.    +..++..|+.+|
T Consensus       130 l~~L~~~l~~----~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~----~~~vR~~A~~aL  198 (852)
T 4fdd_A          130 LPKLCSLLDS----EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK---HS----SPKIRSHAVACV  198 (852)
T ss_dssp             HHHHHHHHSC----SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT---CS----SHHHHHHHHHHH
T ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc---CC----CHHHHHHHHHHH
Confidence            4444444443    47788999999999998764432110  00  1234555555552   22    688999999999


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      ...+....... .-.-.+.++.+..++.+++.+++..|+.+|..|+...++.-...  ..++++.++.++++. ++.++.
T Consensus       199 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~--l~~l~~~l~~~~~~~-~~~vr~  274 (852)
T 4fdd_A          199 NQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRTQDQ-DENVAL  274 (852)
T ss_dssp             HTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG--HHHHHHHHHHHHTCS-SHHHHH
T ss_pred             HHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHccCC-cHHHHH
Confidence            85444332211 11113578888898888899999999999999976555432222  136888999999887 789999


Q ss_pred             HHHHHHHHHhcCCCCCCchhHHHHh---cCcHHHHHHHhh-----------c-----------cccchHHHHHHHHHHhc
Q 038250          280 ASLVVVYRTITSASATEKPIQKFVD---MGLVSLLLEMLV-----------D-----------AQRSLCEKALSVLDGLC  334 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~~~~~~~~i~~---~g~v~~Lv~lL~-----------~-----------~~~~~~~~a~~~L~~L~  334 (444)
                      .|+..+..++....    .+. .+.   ...++.|+..+.           +           .+-.++..|..+|..|+
T Consensus       275 ~a~e~l~~l~~~~~----~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la  349 (852)
T 4fdd_A          275 EACEFWLTLAEQPI----CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA  349 (852)
T ss_dssp             HHHHHHHHHTTSTT----HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchh----HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence            99999999987643    332 222   246777777762           2           12246888999999988


Q ss_pred             CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHH
Q 038250          335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEH  414 (444)
Q Consensus       335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~  414 (444)
                      .....  .+ . ...++.+...+.+.+...++.|+.+|..++...    .+... -.-.++++.|+.++.+. ++.+|..
T Consensus       350 ~~~~~--~~-~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----~~~~~-~~l~~~l~~l~~~l~d~-~~~Vr~~  419 (852)
T 4fdd_A          350 NVYRD--EL-L-PHILPLLKELLFHHEWVVKESGILVLGAIAEGC----MQGMI-PYLPELIPHLIQCLSDK-KALVRSI  419 (852)
T ss_dssp             HHHGG--GG-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----HHHHG-GGHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             HhccH--HH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----hHHHH-HHHHHHHHHHHHHcCCC-CHHHHHH
Confidence            63321  11 1 135677777776678899999999999999843    22222 23467889999999877 8999999


Q ss_pred             HHHHHHHHHhh
Q 038250          415 VSELLKLLNPH  425 (444)
Q Consensus       415 a~~ll~~l~~~  425 (444)
                      |++.+..+...
T Consensus       420 a~~~l~~l~~~  430 (852)
T 4fdd_A          420 TCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHTHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988888764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.04  E-value=2.4e-10  Score=83.44  Aligned_cols=54  Identities=17%  Similarity=0.407  Sum_probs=43.3

Q ss_pred             CCCCCCccccccccccCc---CceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           30 ELTTPNHFRCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .........|+||++.|.   .++.++|||.||..||.+|+.  ...+||.|+..+...
T Consensus         8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A            8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI--TNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCSBSCSC
T ss_pred             cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH--cCCCCcCcCccccCc
Confidence            344556689999999885   457789999999999999993  345799999887643

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.02  E-value=1.5e-10  Score=122.31  Aligned_cols=75  Identities=25%  Similarity=0.384  Sum_probs=69.2

Q ss_pred             CCCCCCccccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhccc
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRS  106 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~~  106 (444)
                      ..++|++|.|||+.++|+|||+++.| +||+|.+|++|+  ..+.+||.+++++...++.||..++..|++|+.++..
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl--~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL--LSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH--TTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHH--hcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999997 699999999999  3467899999999999999999999999999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=7.5e-11  Score=86.41  Aligned_cols=53  Identities=23%  Similarity=0.421  Sum_probs=46.3

Q ss_pred             CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .....+.+.|+||++.+.+ ++++|||+||..|+.+|+  .....||.|+..+...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS--DRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS--CCCSSCHHHHHCTTCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH--HCcCcCCCcCCcccCC
Confidence            3456677899999999999 889999999999999999  5678999999888654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=4e-10  Score=83.44  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=44.5

Q ss_pred             CCCCCCccccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           30 ELTTPNHFRCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        30 ~~~~~~~~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .....++..|+||++.|.+|..+   +|||.||+.||.+|+.  ....||.|+..+...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH--HCSBCTTTCCBCSSC
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH--cCCcCCCcCcccccc
Confidence            34566678999999999988655   9999999999999993  345899999887643

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.98  E-value=3.4e-10  Score=87.42  Aligned_cols=51  Identities=18%  Similarity=0.414  Sum_probs=43.9

Q ss_pred             CCCCccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           32 TTPNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ...++..|+||++.|.+   ++.++|||.||..||.+|+  +...+||.|+..+..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL--QKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH--TTTCBCTTTCCBSSC
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH--HcCCcCcCcCccCCC
Confidence            34566899999999988   7888999999999999999  556799999988754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.98  E-value=7e-09  Score=112.76  Aligned_cols=276  Identities=12%  Similarity=0.054  Sum_probs=184.8

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      ..++..+...+...+...+..|+.+|..+....+.   .+..  .+.++.|..++.   ++    +.+++..|+.+|..+
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~---d~----~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAG---DE----EPEVRKNVCRALVML  242 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHT---CC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcC---CC----CHHHHHHHHHHHHHH
Confidence            33444444444445788899999999888754331   1111  246677777663   22    688999999999855


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhc----------C
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIK----------E  271 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~----------~  271 (444)
                      +...++.-.... .+.++.++..+++.+++++..|+..+..++ .....+..+. .....+|.|+..+.          .
T Consensus       243 ~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~-~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~  320 (852)
T 4fdd_A          243 LEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLA-EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG  320 (852)
T ss_dssp             HHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT-TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred             HHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence            544443221111 257888888888888999999999999995 3333333220 01256777777762          1


Q ss_pred             C-----------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH
Q 038250          272 P-----------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR  340 (444)
Q Consensus       272 ~-----------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~  340 (444)
                      +           .+..+++.|+.+|..|+....      ..++ ...++.+.+++.+.+..+++.|+.+|..++......
T Consensus       321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~------~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~  393 (852)
T 4fdd_A          321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYR------DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG  393 (852)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHG------GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred             CcccccccccccccchHHHHHHHHHHHHHHhcc------HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence            1           123468889999999986532      1222 246788888888888999999999999999855432


Q ss_pred             HHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250          341 GDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       341 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                      ..- .-.+.++.++..+...++.++..|+++|.+++...+    .......-.++++.|+..|... ++.+|+.|.+.+.
T Consensus       394 ~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~  467 (852)
T 4fdd_A          394 MIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----SQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFA  467 (852)
T ss_dssp             HGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----HSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            211 124567888887777788999999999999987421    1111112357888899998877 8999999999887


Q ss_pred             HHHhh
Q 038250          421 LLNPH  425 (444)
Q Consensus       421 ~l~~~  425 (444)
                      .+.+.
T Consensus       468 ~l~~~  472 (852)
T 4fdd_A          468 TLEEE  472 (852)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=1e-10  Score=81.49  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=40.7

Q ss_pred             CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .+++.|+||.+.|.+|++++|||+||+.|+.+     ....||.|++.+...
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeecC
Confidence            45689999999999999999999999999876     356899999887643

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.98  E-value=1.8e-10  Score=83.81  Aligned_cols=48  Identities=29%  Similarity=0.456  Sum_probs=41.4

Q ss_pred             CccccccccccCcCc-eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           35 NHFRCPISLDLMKDP-VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        35 ~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      +...||||.+.+.+| +.++|||+||..|+.+|+  +....||.|+..+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH--HHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHH--hCcCcCcCCChhhHh
Confidence            456899999999997 677999999999999999  344789999988753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.95  E-value=2.9e-10  Score=78.90  Aligned_cols=48  Identities=21%  Similarity=0.547  Sum_probs=41.7

Q ss_pred             CCCccccccccccCcC---ceecC-CcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           33 TPNHFRCPISLDLMKD---PVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~---Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      +.++..|+||.+.+.+   ++.++ |||.||..|+.+|+  +...+||.|+..+
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--~~~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--TTCCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH--HcCCcCcCCCCEe
Confidence            4566899999999998   78886 99999999999999  4567899999865

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.94  E-value=4.6e-09  Score=111.26  Aligned_cols=197  Identities=12%  Similarity=0.079  Sum_probs=145.9

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV-WFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      .|.++++.|++.       ++..+..|+.+|. ++..+++++..+...|+|..++ .+|...+.++++.|+++|+||+..
T Consensus        35 ~i~Pll~~L~S~-------~~~~r~~A~~al~-~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           35 KILPVLKDLKSP-------DAKSRTTAAGAIA-NIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             TTHHHHHHHSSS-------CCSHHHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCC-------CHHHHHHHHHHHH-HHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            355677888542       5789999999999 6667888988888888887765 467788999999999999999643


Q ss_pred             -chhhHHHhhcccccHHHHHHHhcCC-------------CC-------hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250          248 -DHRKVNVLLDIEGAIEPLFKLIKEP-------------IC-------PTATKASLVVVYRTITSASATEKPIQKFVDMG  306 (444)
Q Consensus       248 -~~~~~~~i~~~~g~i~~Lv~ll~~~-------------~~-------~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g  306 (444)
                       ..+.+..+ ...|++++|..++++.             ..       .....+++.+|++||.+.+   +....+.+.|
T Consensus       107 ~g~d~~~~l-~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~---~~~~~v~~~~  182 (684)
T 4gmo_A          107 EEADFCVHL-YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD---EIHEAVATKQ  182 (684)
T ss_dssp             SCHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHTCH
T ss_pred             cCchHHHHH-HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHhcc
Confidence             35777777 4579999999998631             00       1244567889999997764   4667788899


Q ss_pred             cHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH--hhcChhHHHHHHHHHHHHcc
Q 038250          307 LVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI--LRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       307 ~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll--~~~~~~~~~~a~~~L~~L~~  377 (444)
                      +++.|+.+|.+.   ..+++..|+.+|+.|+.+...-.+.+.+.|....+.-++  .+.+...+..++++|.|+..
T Consensus       183 ~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          183 TILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence            999999999644   356899999999999986655554446666543332222  33455566788899999753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.94  E-value=2.9e-10  Score=78.92  Aligned_cols=47  Identities=21%  Similarity=0.430  Sum_probs=40.2

Q ss_pred             CccccccccccCcC----ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           35 NHFRCPISLDLMKD----PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        35 ~~~~Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .+..|+||++.+.+    ++.++|||.||..|+.+|+. . ...||.|+..++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-E-GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-H-TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-c-CCcCCCCCCcCC
Confidence            35789999999976    77889999999999999993 3 388999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.94  E-value=2.3e-10  Score=95.07  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             CCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           34 PNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      ++++.||||++.|.+|       ++++|||+||+.||.+|+  +....||.|++.+....+.+
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~l~~   65 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHP   65 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHH--TTCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHH--HhCCCCCCCCCcCccccccc
Confidence            4578999999999999       889999999999999999  55669999999988665444

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.3e-10  Score=84.15  Aligned_cols=50  Identities=16%  Similarity=0.401  Sum_probs=42.6

Q ss_pred             CCCccccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           33 TPNHFRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ..+...|+||++.|.++   +.++|||.||..||.+|+  +....||.|++.+..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~--~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH--HHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH--HcCCcCcCcCCcCCC
Confidence            45567999999999988   677999999999999999  335689999988754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.91  E-value=3.9e-08  Score=101.66  Aligned_cols=268  Identities=12%  Similarity=0.067  Sum_probs=172.5

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..+...+...++.++..|+..|..++.....   .......+|.|..++.   +.    +..++..|+.+|..+..
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~---d~----~~~vr~~a~~~l~~l~~  232 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLAS---DE----QDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHT---CS----CHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhc---CC----cHHHHHHHHHHHHHHHH
Confidence            34455444444445788899999999999865332   1223467788887773   22    57888888888873332


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      ..++.   ......+|.+..++.+.+..+|..|+.+|..++.....  +.+  ...+++.++.+++++ ++.++..|+.+
T Consensus       233 ~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~-~~~vr~~a~~~  304 (588)
T 1b3u_A          233 LLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT--KTDLVPAFQNLMKDC-EAEVRAAASHK  304 (588)
T ss_dssp             HSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH--HHTHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred             hCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc--hhHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            21111   11134688888888888999999999999999543211  112  246789999999987 79999999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA  364 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  364 (444)
                      |..++..-.  ...+....-...+|.+..++.+.+..++..++.+|..++..-. ....  ....+|.+..++...++.+
T Consensus       305 l~~~~~~~~--~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~--~~~l~p~l~~~l~d~~~~V  379 (588)
T 1b3u_A          305 VKEFCENLS--ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT--IEHLLPLFLAQLKDECPEV  379 (588)
T ss_dssp             HHHHHHTSC--TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH--HHHTHHHHHHHHTCSCHHH
T ss_pred             HHHHHHHhC--hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH--HHHHHHHHHHHhCCCchHH
Confidence            999987643  1112222335678889999988889999999999998875221 1111  1246788888777667788


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +..++.+|..++...+.  . .    ....+++.|..++... +.++|..+...+..+.
T Consensus       380 r~~a~~~l~~l~~~~~~--~-~----~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~  430 (588)
T 1b3u_A          380 RLNIISNLDCVNEVIGI--R-Q----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             HHHHHTTCHHHHHHSCH--H-H----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH--H-H----HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence            88888888777653221  1 0    1123444444444433 4445555444444443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.85  E-value=7.4e-08  Score=99.56  Aligned_cols=253  Identities=10%  Similarity=0.037  Sum_probs=170.5

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      ++...+..|+.+|..++...+..   ....-.++.+..+..   +.    +..++..|+.++......-.+.    ....
T Consensus        99 ~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~---~~----~~~~R~~a~~~l~~~~~~~~~~----~~~~  164 (588)
T 1b3u_A           99 EETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPRVSSA----VKAE  164 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTTSCHH----HHHH
T ss_pred             chHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHHHHhcCHH----HHHH
Confidence            47788999999999998765432   122234555555552   12    4678888888887433332221    1234


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      .++.+..++.+.++.+|..|+.+|..++..... ....   ...+|.|..+++++ ++.++..|+.+|..++..-.    
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~---~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~----  235 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNVK---SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLP----  235 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHHH---HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSC----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH-HhHH---HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCC----
Confidence            578888888888999999999999999643322 1122   47889999999887 78999999999999987643    


Q ss_pred             hhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          298 PIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      . . ......++.+..++.+.+..++..++.+|..++..... ...  ....++.+++++...+..++..|+.+|..++.
T Consensus       236 ~-~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  310 (588)
T 1b3u_A          236 Q-E-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             H-H-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             H-H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc--hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            1 1 23345788888888888889999999999999863211 111  13468889998887788899999999999987


Q ss_pred             ccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          378 NEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ..+..   ......-..+++.+..++++. +..+|+.++..+..+
T Consensus       311 ~~~~~---~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l  351 (588)
T 1b3u_A          311 NLSAD---CRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL  351 (588)
T ss_dssp             TSCTT---THHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred             HhChh---hhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            54321   011111234556666666555 666666665544443

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.84  E-value=2.3e-09  Score=86.54  Aligned_cols=50  Identities=12%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             CccccccccccCcCce------------------ecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCC
Q 038250           35 NHFRCPISLDLMKDPV------------------TLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTS   84 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv------------------~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~   84 (444)
                      .+..||||++.|.+|.                  .++|||.||..||.+|+..   ....+||.|+..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3469999999998875                  6799999999999999943   345789999988764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.82  E-value=6.1e-08  Score=97.01  Aligned_cols=269  Identities=12%  Similarity=0.051  Sum_probs=173.9

Q ss_pred             ChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-hcccC
Q 038250          139 DQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-YLGSA  216 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-~i~~~  216 (444)
                      +...+..|+..|..++.+.. ..-... -...++.++..|.+   .  ..+..++..|+.++...+..-.++.. .....
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~---~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  216 (462)
T 1ibr_B          143 TEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK---E--EPSNNVKLAATNALLNSLEFTKANFDKESERH  216 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST---T--CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            67788999999999987542 111111 12366677777732   1  01478999999999854433222111 00001


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhccc-ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC-
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIE-GAIEPLFKLIKEPICPTATKASLVVVYRTITSAS-  293 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-  293 (444)
                      -.++.+...+.+.+.+++..++.+|..++...++. ...+   . ++++.++..+++. ++.++..|+..+..++.... 
T Consensus       217 ~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~  292 (462)
T 1ibr_B          217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD  292 (462)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH
Confidence            13666666777778999999999999997554432 2333   3 7788888888877 78899999999998876420 


Q ss_pred             -----------CCC--chhHHHHh---cCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChhhHHHHhcCCCCh
Q 038250          294 -----------ATE--KPIQKFVD---MGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF  350 (444)
Q Consensus       294 -----------~~~--~~~~~i~~---~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i  350 (444)
                                 +..  .....+++   ...+|.+++.|.+.       +..++..|+.+|..|+..-.  ..+ . ..++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~-~-~~~~  368 (462)
T 1ibr_B          293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI-V-PHVL  368 (462)
T ss_dssp             HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH-H-HHHH
T ss_pred             HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH-H-HHHH
Confidence                       000  00111221   34677777887532       34678899999999886322  122 1 2345


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          351 PVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       351 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      +.+...+.+.+...++.|+.+|..++....   .+..... -..+++.|+.+|.+. .+.+|..|++.+..+...-
T Consensus       369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence            666666666678899999999999997421   1111111 267899999999887 8999999999888887654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.82  E-value=3e-07  Score=95.70  Aligned_cols=273  Identities=11%  Similarity=0.048  Sum_probs=176.5

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      +.++..+...+...++.++..|+.+|..+...+++   .+.+.|+++.|..+|.   +.    ++.++..|+.+|..+..
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA---DS----NPMVVANAVAALSEISE  189 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS---CS----CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC---CC----ChhHHHHHHHHHHHHHh
Confidence            34344444444445889999999999999986554   3445678899999993   33    68999999999995554


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      .+++....-...+.++.|+..|...++-.+.....+|..++..+++.   .   ..+++.+..++++. ++.++..|+++
T Consensus       190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~---~---~~~l~~l~~~l~~~-~~~V~~ea~~~  262 (591)
T 2vgl_B          190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE---A---QSICERVTPRLSHA-NSAVVLSAVKV  262 (591)
T ss_dssp             SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---H---HHHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred             hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---H---HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            44433211112356788888888888888888888888874333222   1   35678888889887 78999999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hh------------------h-HHHH-
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DY------------------G-RGDA-  343 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~------------------~-~~~i-  343 (444)
                      +.++...-..+.+....+ -..++++|+.++. .++.++-.|+.+|..++.. ++                  . +.++ 
T Consensus       263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~  340 (591)
T 2vgl_B          263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD  340 (591)
T ss_dssp             HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred             HHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence            999874210001123322 2346677887664 6778888888888877631 10                  1 1111 


Q ss_pred             ----hcCCCChHHHHHHHh----hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHH
Q 038250          344 ----YNNSLIFPVIVKKIL----RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHV  415 (444)
Q Consensus       344 ----~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a  415 (444)
                          +.+...+..++..|.    +.+...+..+++++..++...+.    .     ....++.|+.++... .+.++..+
T Consensus       341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~-----~~~~v~~Ll~ll~~~-~~~v~~e~  410 (591)
T 2vgl_B          341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----S-----AERCVSTLLDLIQTK-VNYVVQEA  410 (591)
T ss_dssp             HHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----H-----HHHHHHHHHHHHHTC-CHHHHHHH
T ss_pred             HHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----H-----HHHHHHHHHHHHccc-chHHHHHH
Confidence                134444555554443    45778889999999999985321    1     245788899988887 55555555


Q ss_pred             HH-HHHHHHhhc
Q 038250          416 SE-LLKLLNPHR  426 (444)
Q Consensus       416 ~~-ll~~l~~~~  426 (444)
                      .. +-.++.++.
T Consensus       411 i~~l~~ii~~~p  422 (591)
T 2vgl_B          411 IVVIRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCc
Confidence            54 444444444

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.75  E-value=1.6e-09  Score=80.13  Aligned_cols=47  Identities=21%  Similarity=0.224  Sum_probs=41.4

Q ss_pred             CCCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           32 TTPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      .+.+++.|+||.+.+.+|++++|||+ ||..|+.+|      ..||.|+..+..
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~   67 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred             cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence            34566899999999999999999999 999999887      579999988764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.70  E-value=7.5e-09  Score=99.71  Aligned_cols=49  Identities=18%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      ...|+||.+.+.+|+.++|||+||..|+.+|+ ......||.|+..+...
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl-~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ-ESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHH-HHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHH-hcCCCCCCCCCCccCCc
Confidence            37999999999999999999999999999999 44677999999987643

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.68  E-value=3.3e-09  Score=82.38  Aligned_cols=48  Identities=13%  Similarity=0.274  Sum_probs=40.0

Q ss_pred             CCccccccccccCcCceec---CCcchhcHHHHHHHHHh---cC---CCCCCC--CCcc
Q 038250           34 PNHFRCPISLDLMKDPVTL---STGITYDRENIEKWIHE---DG---NITCPV--TNRV   81 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~---~~---~~~CP~--c~~~   81 (444)
                      .+.+.||||.+.+.+|+++   +|||+||+.|+.+|+..   .+   ...||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3568999999999999765   69999999999999853   23   358999  9887

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.67  E-value=2.6e-09  Score=88.58  Aligned_cols=55  Identities=18%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             CCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250           34 PNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN   90 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n   90 (444)
                      ++.+.|+||++.+.+|       +.++|||+||..||.+|+  +...+||.|+..+...++.+.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH--HHCSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH--HcCCCCCCCCCcCChhcceee
Confidence            5568999999999988       888999999999999999  345699999999887665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.66  E-value=4.8e-07  Score=94.15  Aligned_cols=262  Identities=13%  Similarity=0.099  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ...+++.+.+    .+...++-+...+..+++.+++..     .-++..|.+-|   +    +.++.++..|+.+|. .+
T Consensus        51 ~~~vi~l~~s----~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL---~----~~n~~ir~~AL~~L~-~i  113 (591)
T 2vgl_B           51 FPDVVNCMQT----DNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDC---E----DPNPLIRALAVRTMG-CI  113 (591)
T ss_dssp             HHHHHHTTSS----SCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGS---S----SSSHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHhCC----CCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHc---C----CCCHHHHHHHHHHHH-cC
Confidence            4456664444    377778777788888876544321     01123333333   2    237889999999998 44


Q ss_pred             CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHH
Q 038250          204 PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLV  283 (444)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  283 (444)
                      . .++.-     ...++.+..+|.+.++.+|..|+.+|.++...+++   .+ ...+.++.|..+|.++ ++.++.+|+.
T Consensus       114 ~-~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~-~~~~~~~~l~~lL~d~-d~~V~~~A~~  182 (591)
T 2vgl_B          114 R-VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MV-EDQGFLDSLRDLIADS-NPMVVANAVA  182 (591)
T ss_dssp             C-SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CH-HHHHHHHHHHHTTSCS-CHHHHHHHHH
T ss_pred             C-hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hc-ccccHHHHHHHHhCCC-ChhHHHHHHH
Confidence            3 22221     23467899999999999999999999999765544   33 3357899999999877 8999999999


Q ss_pred             HHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChh
Q 038250          284 VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDL  363 (444)
Q Consensus       284 aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~  363 (444)
                      +|..++....   .....-...+.+..|+..+.+.++-.+...+.+|..++..++...     ...++.+..++.+.+..
T Consensus       183 aL~~i~~~~~---~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~  254 (591)
T 2vgl_B          183 ALSEISESHP---NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSA  254 (591)
T ss_dssp             HHHHHTTSCC---SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTH
T ss_pred             HHHHHHhhCC---CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChH
Confidence            9999998764   121111234567888888888888888888888888875432211     12356666666667888


Q ss_pred             HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +...|++++..+....+. +++.... +-..+.+.|+.++. . ++.+|-.|...+..+...
T Consensus       255 V~~ea~~~i~~l~~~~~~-~~~~~~~-~~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          255 VVLSAVKVLMKFLELLPK-DSDYYNM-LLKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             HHHHHHHHHHHSCCSCCB-TTBSHHH-HHHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCC-CHHHHHH-HHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHh
Confidence            999999999998752100 1222332 22455678887664 4 789999998877766554

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.5e-08  Score=76.13  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             CccccccccccCcC--------------ceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           35 NHFRCPISLDLMKD--------------PVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        35 ~~~~Cpic~~~~~~--------------Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ++..|+||++.|.+              ++.+ +|||.|+..||.+|+  +...+||.||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV--KQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT--TTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH--HhCCCCCCcCCCcch
Confidence            34579999999977              4455 599999999999999  455799999987753

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=7.7e-09  Score=76.59  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=40.9

Q ss_pred             CCCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           32 TTPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .+++.+.|+||.+.+.+|+.++|||+ ||..|+.+.      ..||.|+..+...
T Consensus        21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK   69 (75)
T ss_dssp             HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred             cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence            34566899999999999999999999 999998642      5799999988653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.57  E-value=3e-08  Score=70.80  Aligned_cols=47  Identities=21%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             CccccccccccCcCceec--CCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           35 NHFRCPISLDLMKDPVTL--STGIT-YDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~--~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ++..|+||.+...+++.+  +|||. ||..|+.+|+  +....||.||+++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--KRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH--HTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH--HcCCcCCCcCcchh
Confidence            456899999999999987  99999 8999999999  45678999998775

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.55  E-value=3.1e-06  Score=88.49  Aligned_cols=216  Identities=12%  Similarity=0.085  Sum_probs=125.0

Q ss_pred             HHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh
Q 038250          128 NCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG  207 (444)
Q Consensus       128 l~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~  207 (444)
                      +..+...+...++.++..|+.++..+...+++..    + +.++.+..+|.   +.    |+.++..|+.+|..+...++
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~-~~~~~l~~lL~---D~----d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----E-MFLPATKNLLN---EK----NHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----G-GGGGGTTTSTT---CC----CHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----H-HHHHHHHHHhC---CC----CHhHHHHHHHHHHHHHHhCh
Confidence            3333333333488899999999999988766432    2 56777777773   22    68999999999996555444


Q ss_pred             hhhhhcccCCcHHHHHHHHhc---------------CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-
Q 038250          208 EGLTYLGSASSMRCMVWFLKS---------------GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE-  271 (444)
Q Consensus       208 ~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-  271 (444)
                      +....+  ...+|.++.+|.+               .++-.+...+.+|..++..+++....      .++.|..++.. 
T Consensus       212 ~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~------~~~~L~~l~~~~  283 (618)
T 1w63_A          212 DMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA------MNDILAQVATNT  283 (618)
T ss_dssp             HHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT------THHHHHHHHHTS
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHHHhcc
Confidence            322222  2568888888764               36778888899999996555443322      23334444321 


Q ss_pred             --C--CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250          272 --P--ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNS  347 (444)
Q Consensus       272 --~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  347 (444)
                        .  .+..+.-.|++++..+....        .+.+ .++..|..+|.+.++.++..|+.+|..++...   ..+ + .
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~~--------~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~-~-~  349 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSES--------GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNA-V-Q  349 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCCH--------HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHH-H-G
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCH--------HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHH-H-H
Confidence              1  12355556666666543211        1111 35566666666666666666666666665421   112 1 1


Q ss_pred             CChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          348 LIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       348 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      ...+.++..+...+..++..|+.+|..++.
T Consensus       350 ~~~~~i~~~l~d~d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          350 RHRSTIVDCLKDLDVSIKRRAMELSFALVN  379 (618)
T ss_dssp             GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            233444444444455566666666666655

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.53  E-value=7.4e-06  Score=85.61  Aligned_cols=252  Identities=11%  Similarity=0.046  Sum_probs=166.1

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..|...+.+.++..+..|+.+|..+...      .+. ...++.+.++|.+   .    ++.++..|+.++..+..
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~---~----~~~VRk~A~~al~~l~~  171 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKT---S----NSYLRKKAALCAVHVIR  171 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHS---C----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHH
Confidence            34455555555455778888888998888632      122 2456777777743   2    68999999999985555


Q ss_pred             CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-------------
Q 038250          205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE-------------  271 (444)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-------------  271 (444)
                      .+++..     .+.++.+..+|.+.++.++..|+.+|..++..+++....+   ...+|.|+.+|.+             
T Consensus       172 ~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~  243 (618)
T 1w63_A          172 KVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS  243 (618)
T ss_dssp             HCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred             HChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence            454432     2678888889988899999999999999965444443344   3678888887763             


Q ss_pred             -CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHhcCChhhHHHHh
Q 038250          272 -PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDYGRGDAY  344 (444)
Q Consensus       272 -~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~~~~~i~  344 (444)
                       ..++-.+...+.+|..++..+.    .    .....++.|..++..      .+..++-.|+.++..+...+..+.   
T Consensus       244 ~~~~~~~q~~il~~L~~l~~~~~----~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~---  312 (618)
T 1w63_A          244 GISDPFLQVRILRLLRILGRNDD----D----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV---  312 (618)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTTCH----H----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH---
T ss_pred             CCCCChHHHHHHHHHHHhCCCCH----H----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH---
Confidence             1257778888999999987653    1    112355666666542      245688889999998866443222   


Q ss_pred             cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          345 NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       345 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                         .++..|..++.+.++.++..|+.+|..++...|    ...     ......++..+... +..+|..|..+|-.+
T Consensus       313 ---~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l  377 (618)
T 1w63_A          313 ---LAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFAL  377 (618)
T ss_dssp             ---HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHH
Confidence               356788888887888999999999999987422    111     12333444444444 455555555544333

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.53  E-value=5.7e-08  Score=76.66  Aligned_cols=46  Identities=20%  Similarity=0.364  Sum_probs=39.2

Q ss_pred             ccccccccccCcCc------------------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMKDP------------------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~~P------------------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      +-.|+||++.|.++                  +.++|||.|+..||.+|+  ..+.+||.|++.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl--~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH--TTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH--HcCCcCcCCCCcce
Confidence            45899999999976                  335899999999999999  55789999998754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.51  E-value=4.9e-08  Score=69.45  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             ccccccccccCcCceec--CCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMKDPVTL--STGIT-YDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~--~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      ...|+||.+...+++.+  +|||. ||..|+.+|+  +....||.||+++.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--KAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--HTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--HhCCcCCCcCchhh
Confidence            45899999999999988  99998 9999999998  34578999999875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.48  E-value=2.2e-06  Score=92.69  Aligned_cols=276  Identities=9%  Similarity=0.045  Sum_probs=171.6

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      +.++..+...+.+.+...+..|+.+|..++....  ...+..  ..+++.|+..+.   +.    ++.++..++.+|...
T Consensus       368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~---d~----~~~vr~~a~~~l~~l  438 (861)
T 2bpt_A          368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMN---DQ----SLQVKETTAWCIGRI  438 (861)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGG---CS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcC---CC----cHHHHHHHHHHHHHH
Confidence            3445555444444577888999999999985432  111211  135566666662   22    688998888888733


Q ss_pred             cCCChhhh-hhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----hhhHHHhhcccccHHHHHHHhcCCC-Ch
Q 038250          203 FPLAGEGL-TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-----HRKVNVLLDIEGAIEPLFKLIKEPI-CP  275 (444)
Q Consensus       203 l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-----~~~~~~i~~~~g~i~~Lv~ll~~~~-~~  275 (444)
                      ...-...- ..-.-...++.|+..|++. +.++..|+++|.+++...     ......+   ..+++.|+.++++.. ++
T Consensus       439 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~  514 (861)
T 2bpt_A          439 ADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEF  514 (861)
T ss_dssp             HHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGG
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcch
Confidence            22111100 0001135678888888765 899999999999996432     1222333   367888899998542 36


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------------ccchHHHHHHHHHHhcCChhhH
Q 038250          276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------------QRSLCEKALSVLDGLCSSDYGR  340 (444)
Q Consensus       276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------------~~~~~~~a~~~L~~L~~~~~~~  340 (444)
                      .++..++.+|..++....   ......+. ..++.+++.|...               ...++..++.+|..++..-.. 
T Consensus       515 ~vr~~a~~al~~l~~~~~---~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-  589 (861)
T 2bpt_A          515 NARASAFSALTTMVEYAT---DTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-  589 (861)
T ss_dssp             GHHHHHHHHHHHHHHHCC---GGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-
T ss_pred             HHHHHHHHHHHHHHHHcc---hhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence            789999999999987764   12222332 3677788777532               345677888899888752211 


Q ss_pred             HHHh-cCCCChHHHHHHHhhcCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250          341 GDAY-NNSLIFPVIVKKILRVSD-LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL  418 (444)
Q Consensus       341 ~~i~-~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l  418 (444)
                       .+. .-...++.++..+...+. .+++.++.++..++...+.    ..... -..+++.|+..+... ...++..|..+
T Consensus       590 -~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~-l~~i~~~l~~~l~~~-~~~vr~~a~~~  662 (861)
T 2bpt_A          590 -SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK----GFEKY-LETFSPYLLKALNQV-DSPVSITAVGF  662 (861)
T ss_dssp             -GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG----GGHHH-HHHHHHHHHHHHHCT-TSHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh----hHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence             110 011356666776766555 7889999999988874321    11111 234788888888665 77888888887


Q ss_pred             HHHHHhh
Q 038250          419 LKLLNPH  425 (444)
Q Consensus       419 l~~l~~~  425 (444)
                      +..+.+.
T Consensus       663 l~~l~~~  669 (861)
T 2bpt_A          663 IADISNS  669 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.47  E-value=3.1e-06  Score=91.70  Aligned_cols=277  Identities=12%  Similarity=0.049  Sum_probs=175.5

Q ss_pred             HHHHHHHHhhcccC--ChhHHHHHHHHHHHHhccCccc-chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          125 FEINCNITTACKSE--DQAGCRDLVAKIKKWTKESDRN-KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       125 ~~ll~~L~~~~~~~--~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      ..++..+...+..+  +...+..|+.+|..++..-..+ .........++.+..++.   +    .+.+++..++.+|..
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~----~~~~vr~~a~~~l~~  243 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---C----PDTRVRVAALQNLVK  243 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT---C----SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHH
Confidence            34444444433333  4677888999999887532211 011111124555555442   2    257889999998885


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------------hHHHhhccc
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----------------------KVNVLLDIE  259 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----------------------~~~~i~~~~  259 (444)
                      ++....+.-........++.++..+.+.++.++..|+..+..++.....                      .+..+   .
T Consensus       244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  320 (876)
T 1qgr_A          244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL---Q  320 (876)
T ss_dssp             HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH---H
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH---H
Confidence            5543333211122236788888888778899999999999988532110                      00111   3


Q ss_pred             ccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHh
Q 038250          260 GAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL  333 (444)
Q Consensus       260 g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L  333 (444)
                      ..++.++..+...      .+...++.|+.+|..++..-.      ..++ ..+++.+...+.+.+..+++.|+.+|..+
T Consensus       321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~------~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i  393 (876)
T 1qgr_A          321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE------DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCI  393 (876)
T ss_dssp             HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG------GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc------HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            5677888887532      245788899999999986532      1222 24667777777778889999999999999


Q ss_pred             cCChh--hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHH
Q 038250          334 CSSDY--GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKT  411 (444)
Q Consensus       334 ~~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~  411 (444)
                      +....  ..... . ...++.++..+...+..++..|+++|.+++...+..   ....-.-..+++.|+..+...  +.+
T Consensus       394 ~~~~~~~~~~~~-~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~--~~v  466 (876)
T 1qgr_A          394 LEGPEPSQLKPL-V-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAE--PRV  466 (876)
T ss_dssp             SSSSCHHHHHHH-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTTSC--HHH
T ss_pred             HcCCCHHHHHHH-H-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh---cccHHHHHHHHHHHHHHHcCC--HHH
Confidence            97432  22222 1 357888888887778899999999999999854320   000001246777888888653  788


Q ss_pred             HHHHHHHHHHHHhh
Q 038250          412 KEHVSELLKLLNPH  425 (444)
Q Consensus       412 k~~a~~ll~~l~~~  425 (444)
                      ++.|.+++..+...
T Consensus       467 ~~~a~~al~~l~~~  480 (876)
T 1qgr_A          467 ASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988877777654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.47  E-value=9e-06  Score=88.08  Aligned_cols=268  Identities=12%  Similarity=0.059  Sum_probs=171.4

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-hccc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-YLGS  215 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-~i~~  215 (444)
                      +...+..++..|..++.....  ..+..  ...++.+.+.+.+   +  +.+..++..|+.+|...+..-..+-. ....
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~---~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  215 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRK---E--EPSNNVKLAATNALLNSLEFTKANFDKESER  215 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHST---T--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcC---C--CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            667888999999999865321  11211  2345555555532   1  01477899999999854432222110 0001


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC-
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS-  293 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-  293 (444)
                      ...++.+...+.+.+.+++..++.+|..++...++. ...+ . ..+++.++..+.+. ++.++..|+..+.+++.... 
T Consensus       216 ~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~  292 (876)
T 1qgr_A          216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD  292 (876)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHh
Confidence            125777777777778999999999999997554432 3334 2 27788888888776 78899999999988875420 


Q ss_pred             -----------------CCCchhHHHHhcCcHHHHHHHhhc-------cccchHHHHHHHHHHhcCChhhHHHHhcCCCC
Q 038250          294 -----------------ATEKPIQKFVDMGLVSLLLEMLVD-------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI  349 (444)
Q Consensus       294 -----------------~~~~~~~~i~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  349 (444)
                                       .......... ...++.+++.|..       .+..++..|..+|..|+.....  .+ . ...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~-~~~  367 (876)
T 1qgr_A          293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-V-PHV  367 (876)
T ss_dssp             HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-H-HHH
T ss_pred             HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh-H-HHH
Confidence                             0000001111 3467788888852       2456888999999988763221  11 1 134


Q ss_pred             hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ++.+...+.+.+..+++.|+.+|..++...+   ++.... .-..+++.|+..+... .+.+|..|++++..+....
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~  439 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCC---HHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhC
Confidence            4555555555678899999999999997432   122222 2356889999999877 8999999999888887653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.45  E-value=3.3e-06  Score=84.26  Aligned_cols=262  Identities=7%  Similarity=0.035  Sum_probs=165.5

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccCC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSAS  217 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g  217 (444)
                      +... ..+...|..++...-....   -.+.++.|+..+.+.+ .    +..+++.|+.+|..++... .+.-... -..
T Consensus       103 ~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~-~----~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~  172 (462)
T 1ibr_B          103 TYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPN-S----TEHMKESTLEAIGYICQDIDPEQLQDK-SNE  172 (462)
T ss_dssp             CSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTT-C----CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHH
T ss_pred             Cchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCC-C----CHHHHHHHHHHHHHHHHhCCchhhHhH-HHH
Confidence            4556 6777888888765321111   1468888988885310 0    3678899999988444321 1111111 134


Q ss_pred             cHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHH-HhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          218 SMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVN-VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       218 ~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      .++.++..|.+.  +..+|..|+.++.++.....+.-. .. ...-+++.|...+.++ ++.++..++.+|..++.... 
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~-  249 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES-ERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYY-  249 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHH-HHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCG-
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHH-
Confidence            678888899887  799999999999997432221111 00 0112466666777666 78999999999999987643 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC--------------------CCChHHHH
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN--------------------SLIFPVIV  354 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--------------------~g~i~~Lv  354 (444)
                        +.-...+..+.++.++..+.+.++.++..|+..+..++...........+                    ...+|.++
T Consensus       250 --~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~  327 (462)
T 1ibr_B          250 --QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT  327 (462)
T ss_dssp             --GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence              11111222267888888888888899999999999887643111111000                    12345555


Q ss_pred             HHHhhc-------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          355 KKILRV-------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       355 ~ll~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +.|...       +...+..|..+|..|+...+    +    .+-..+++.+...+++. +...|+.|..++..+..
T Consensus       328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----~----~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~  395 (462)
T 1ibr_B          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----D----DIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILE  395 (462)
T ss_dssp             HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT----T----THHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSS
T ss_pred             HHHHhcccccccccchHHHHHHHHHHHHHHhcc----H----HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            555321       23577889999999887532    1    11235667777788776 88999999888888774

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.41  E-value=3e-06  Score=95.72  Aligned_cols=274  Identities=10%  Similarity=0.044  Sum_probs=183.6

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      +..+..++..+.+.    |.+.+..|+..|.+....+...-..-.....++.|++.|.   +.    +..++..|+.+|.
T Consensus         5 ~~~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~----~~~vR~~A~~~L~   73 (1230)
T 1u6g_C            5 SYHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DK----NGEVQNLAVKCLG   73 (1230)
T ss_dssp             CHHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CS----SHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH
Confidence            35677888888776    8889999999998877543211111112245677777773   22    6889999999988


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh------HHHhhcccccHHHHHHHhcCCCC
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK------VNVLLDIEGAIEPLFKLIKEPIC  274 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~------~~~i~~~~g~i~~Lv~ll~~~~~  274 (444)
                      .+...-.+.  .+  ...++.|+..|.+++..+|..|+.+|..++......      ....  ...++|.|+..+.+..+
T Consensus        74 ~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~  147 (1230)
T 1u6g_C           74 PLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQED  147 (1230)
T ss_dssp             HHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSC
T ss_pred             HHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCc
Confidence            544332221  11  245777888888888899999999999996433221      1112  24689999999984327


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250          275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV  354 (444)
Q Consensus       275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  354 (444)
                      +.++..|+.+|..++....  ......  -...++.|+..|.+.+..+++.|+.+|..++.....  .+ . ...++.++
T Consensus       148 ~~~~~~al~~l~~~~~~~~--~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~-~-~~~l~~l~  219 (1230)
T 1u6g_C          148 VSVQLEALDIMADMLSRQG--GLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-F-VDLIEHLL  219 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHTC--SSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhH--hHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH-H-HHHHHHHH
Confidence            8999999999999986432  001111  134677788888887889999999999999974332  22 2 34688888


Q ss_pred             HHHhhcC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          355 KKILRVS-DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       355 ~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      ..+.... ...+..++.+|..++...+.    .... .-..+++.++..++.. ++.+|+.|...+..+.+.
T Consensus       220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          220 SELSKNDSMSTTRTYIQCIAAISRQAGH----RIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHTCSSCSCTTHHHHHHHHHHHSSG----GGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred             HHhccCCchhHHHHHHHHHHHHHHHhHH----HHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            8887643 35667788888888774321    1110 1257889999998876 788999988877776653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.39  E-value=5e-08  Score=72.81  Aligned_cols=46  Identities=13%  Similarity=0.192  Sum_probs=40.3

Q ss_pred             CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      ++++..|+||.+.+.+|+.++|||. ||..|+.+|.      .||.|+..+..
T Consensus        15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~   61 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred             CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence            4556799999999999999999999 9999988754      79999988764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=2.1e-07  Score=67.18  Aligned_cols=46  Identities=15%  Similarity=0.175  Sum_probs=39.6

Q ss_pred             CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      -.+...|+||++...+++.++|||. ||..|+..      ...||.|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence            3446799999999999999999999 99999884      2579999988764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.36  E-value=2.2e-05  Score=69.51  Aligned_cols=200  Identities=17%  Similarity=0.131  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .+..+++.|..    .|+..+.+|+..|.++.+.-+..-....-...++.++.++++   .    |..+.-.|+.+|..+
T Consensus        34 ~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~---~----dEkval~A~r~L~~L  102 (265)
T 3b2a_A           34 ALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ---E----NEKVTIKALRALGYL  102 (265)
T ss_dssp             HHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS---T----THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc---c----chhHHHHHHHHHHHH
Confidence            34444555544    488999999999999998844333333333457899998843   2    678889999999877


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      +..-+-....+.  -.+..|..++++++.-.++.|+..|..+ ......       .+++..|+.++.+. +.+++..++
T Consensus       103 Le~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~-------~~V~~~l~sLl~Sk-d~~vK~agl  171 (265)
T 3b2a_A          103 VKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDS-------KLVRTYINELVVSP-DLYTKVAGF  171 (265)
T ss_dssp             HTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCC-------HHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred             HcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccch-------HHHHHHHHHHHhCC-ChhHHHHHH
Confidence            776553333332  3467888899999999999999999999 333222       34556788888666 899999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI  357 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll  357 (444)
                      .+|.+++.... +.++..     +++.-+-.+|.+.|+.+++.|+.+|..+...+       .-+..++.+.+++
T Consensus       172 ~~L~eia~~S~-D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-------i~~~~~~~~~~~~  233 (265)
T 3b2a_A          172 CLFLNMLNSSA-DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP-------LLENVKIELLKIS  233 (265)
T ss_dssp             HHHHHHGGGCS-SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-------CCSCCHHHHHHHH
T ss_pred             HHHHHhhcccC-CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-------ccHhHHHHHHHHH
Confidence            99999998764 111222     34555778888889999999999999998854       2245566665554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.33  E-value=4.4e-05  Score=82.47  Aligned_cols=283  Identities=12%  Similarity=0.059  Sum_probs=173.7

Q ss_pred             HHHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCcccchhHh--hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          125 FEINCNITTACKSE-DQAGCRDLVAKIKKWTKESDRNKRCIV--DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       125 ~~ll~~L~~~~~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.++..|...+.++ +...+..|+..|..++..-....+.+.  ....++.++..+.+   .  ..+..++..|+.+|..
T Consensus       133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~---~--~~~~~vr~~al~~l~~  207 (861)
T 2bpt_A          133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS---T--ETSKAVRLAALNALAD  207 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST---T--CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcC---C--CCCHHHHHHHHHHHHH
Confidence            34555554444444 778889999999999875322110011  11244555555531   1  1157899999999885


Q ss_pred             hcCCChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250          202 LFPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATK  279 (444)
Q Consensus       202 ~l~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  279 (444)
                      .+..-..+-. .......++.|...+.+++.+++..|+.+|..++...++ ....+ . ..+++.+...+.+. ++.++.
T Consensus       208 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~-~~l~~~~~~~~~~~-~~~vr~  284 (861)
T 2bpt_A          208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-E-QALYALTIATMKSP-NDKVAS  284 (861)
T ss_dssp             HGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-H-HTHHHHHHHHTTCS-SHHHHH
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHcCC-cHHHHH
Confidence            4322221100 000122567777777788999999999999999654332 22233 1 15677777778776 789999


Q ss_pred             HHHHHHHHHhcCCCC--------------CCchhHHHHhcCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChh
Q 038250          280 ASLVVVYRTITSASA--------------TEKPIQKFVDMGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDY  338 (444)
Q Consensus       280 ~a~~aL~~L~~~~~~--------------~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~  338 (444)
                      .|+..+..++.....              .......++ ...++.++..|...       +..++..+..+|..|+..-.
T Consensus       285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~  363 (861)
T 2bpt_A          285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc
Confidence            999999988765210              000111112 45788888888742       23578889999998886322


Q ss_pred             hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250          339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL  418 (444)
Q Consensus       339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l  418 (444)
                      .  .+ . ...++.+...+.+.+...++.|+.+|..++....   .+.....+ ..+++.|+..+... ++.+|..+.++
T Consensus       364 ~--~~-~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~~  434 (861)
T 2bpt_A          364 N--HI-L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD---KVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAWC  434 (861)
T ss_dssp             G--GG-H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             H--hH-H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC---HHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence            1  11 0 1234444444445577889999999999997421   12332222 35788888888777 89999999887


Q ss_pred             HHHHHhh
Q 038250          419 LKLLNPH  425 (444)
Q Consensus       419 l~~l~~~  425 (444)
                      +..+...
T Consensus       435 l~~l~~~  441 (861)
T 2bpt_A          435 IGRIADS  441 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.29  E-value=9.8e-06  Score=73.99  Aligned_cols=188  Identities=12%  Similarity=0.078  Sum_probs=135.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-EPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +.+...+.+.++..|..|+..|..+....+.....  ....+++.|..++. +. +..++..|+.+|..|+..-.   ..
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~---~~   91 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLA---KR   91 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHG---GG
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHh---hh
Confidence            34778888899999999999999996553321111  12356788888885 66 89999999999999996532   11


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      -...+ ...++.|++.+.+.+..+++.|..+|..++.... -.      ..++.+...+...++.+++.++..|..+...
T Consensus        92 ~~~~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~  163 (242)
T 2qk2_A           92 FSNYA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTR  163 (242)
T ss_dssp             GHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            11222 2389999999999999999999999999987432 11      2356777777777889999999999995443


Q ss_pred             c-ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          379 E-EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       379 ~-~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      . +.   .....-+ ...++.|+.+|... ...+|+.|...+..+...-
T Consensus       164 ~~~~---~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          164 TQPT---ALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             CCGG---GCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC---CccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2 21   0111111 36788999999777 8999999999887776553

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=1.1e-06  Score=65.49  Aligned_cols=52  Identities=12%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             CCccccccccccC--cCceecCCc-----chhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250           34 PNHFRCPISLDLM--KDPVTLSTG-----ITYDRENIEKWIHEDGNITCPVTNRVLTSF   85 (444)
Q Consensus        34 ~~~~~Cpic~~~~--~~Pv~~~cg-----~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~   85 (444)
                      .+...|.||++.+  .+|++++|+     |.|...||.+|+...+..+||+|+..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            3446899999877  468888996     999999999999655667999999988643

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.26  E-value=3.1e-05  Score=68.60  Aligned_cols=184  Identities=12%  Similarity=0.118  Sum_probs=140.9

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      +.+..|..+|+..+..++.++..+|..+.+.-+ ..+..+ . ..+++.++.++++. +..+.-.|+.+|..|-.+.+  
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~-e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vp--  107 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-L-ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVP--  107 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCC--
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-H-HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCC--
Confidence            467889999999999999999999999976532 233333 2 57899999999988 89999999999999988764  


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHH
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKL  375 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L  375 (444)
                       -....+..  ++.+|.+++.++++-+.+.++..|..|-- ..      ...+++..+.+++.+.+..++..|+.+|.++
T Consensus       108 -L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv-~~------~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          108 -MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQP-LE------DSKLVRTYINELVVSPDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             -BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCB-SC------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCc-cc------chHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence             23444444  67889999998999999999999999832 11      1123456777888677999999999999999


Q ss_pred             ccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          376 CKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +..+.+  .+..     .+++.-+-+++++. ++.+++.|..++-.+.
T Consensus       178 a~~S~D--~~i~-----~~I~~eI~elL~~e-D~~l~e~aLd~Le~il  217 (265)
T 3b2a_A          178 LNSSAD--SGHL-----TLILDEIPSLLQND-NEFIVELALDVLEKAL  217 (265)
T ss_dssp             GGGCSS--CCCG-----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred             hcccCC--HHHH-----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            997642  2222     35666677788888 9999999988554443

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.22  E-value=1.6e-07  Score=90.00  Aligned_cols=46  Identities=15%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      +.+++.|+||.+.+.+|+.++|||+ ||+.|+.+|      ..||.|+..+..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence            3566899999999999999999999 999999876      479999988754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.16  E-value=1.8e-05  Score=72.30  Aligned_cols=184  Identities=13%  Similarity=0.138  Sum_probs=127.7

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA  206 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~  206 (444)
                      +.+.+.+.    +...+..|+..|..+....+.....- -...++.|...|.  ++.    +..++..|+.+|..++.. 
T Consensus        20 l~~~l~s~----~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~--kd~----~~~V~~~a~~~l~~la~~-   87 (242)
T 2qk2_A           20 FYDKLEEK----KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVIT--KDS----NVVLVAMAGKCLALLAKG-   87 (242)
T ss_dssp             HHHHHTCS----SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHH--HCS----CHHHHHHHHHHHHHHHHH-
T ss_pred             HHhhhccC----CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhc--cCC----CHHHHHHHHHHHHHHHHH-
Confidence            55666554    88999999999999987633211100 0234566666662  122    688999999998843321 


Q ss_pred             hhhhhhcc--cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          207 GEGLTYLG--SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       207 ~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                        .+..+.  -...+|.|+..|.+.+..+++.|..+|..+.... .    +   ..+++.|...|++. ++.++..++..
T Consensus        88 --l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~----~---~~ll~~l~~~l~~~-~~~vr~~~l~~  156 (242)
T 2qk2_A           88 --LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-S----L---EAQQESIVESLSNK-NPSVKSETALF  156 (242)
T ss_dssp             --HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-C----H---HHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             --HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-C----H---HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence              111221  1346889999998889999999999999995422 1    2   24678899999887 89999999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      |..+...... +..-..... ..++.|+.+|.+.+..++..|..+|..++.
T Consensus       157 l~~~l~~~~~-~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          157 IARALTRTQP-TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHTTCCG-GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            9996544310 001112222 589999999999999999999999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.14  E-value=3.1e-07  Score=73.46  Aligned_cols=45  Identities=22%  Similarity=0.442  Sum_probs=0.0

Q ss_pred             cccccccccCcCc-----------------ee-cCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMKDP-----------------VT-LSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~~P-----------------v~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -.|+||++.|.+|                 +. ++|||.|+..||.+|+  ..+.+||.|++++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl--~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWE  111 (117)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH--HcCCcCCCCCCeee
Confidence            4899999999874                 22 4899999999999999  45778999998753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.11  E-value=2.3e-07  Score=76.45  Aligned_cols=119  Identities=17%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      ...++.|+.+|++.++.+|..|+++|..+ ..            ..++.|+.+|+++ ++.++..|+++|.++..     
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~-~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRM-GD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSC-SS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHh-Cc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence            34566666666666666666666666544 11            0146666666655 56666666666655531     


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHH
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILW  373 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~  373 (444)
                               ..+++.|+.+|.+.+..++..|+++|..+..           ..+++.|++++.+.+..++..|+.+|.
T Consensus        72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                     1246666666666666677777777766542           223556666665555666666666554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.10  E-value=0.00029  Score=73.52  Aligned_cols=243  Identities=14%  Similarity=0.130  Sum_probs=155.8

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      .++.++..|+.++.++.+.+++   .+...+.++.|.++|.   +.    |+.++..|+.++..++..+++.   +  ..
T Consensus       160 ~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~a~~~l~~i~~~~~~~---~--~~  224 (621)
T 2vgl_A          160 TMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLN---DQ----HLGVVTAATSLITTLAQKNPEE---F--KT  224 (621)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTT---CS----CHHHHHHHHHHHHHHHHHCHHH---H--TT
T ss_pred             CCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhC---CC----CccHHHHHHHHHHHHHHhChHH---H--HH
Confidence            4788899999999999886553   2333588999999994   23    6889999999988554433331   1  13


Q ss_pred             cHHHHHHHHh----cC-------------CHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHhcCCC------
Q 038250          218 SMRCMVWFLK----SG-------------DLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLIKEPI------  273 (444)
Q Consensus       218 ~i~~Lv~lL~----~~-------------~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll~~~~------  273 (444)
                      .++.++..|.    .+             ++-.|.....+|..++.. +++.++.+   ...+..++..+.+..      
T Consensus       225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l---~~~L~~il~~~~~~~ks~~l~  301 (621)
T 2vgl_A          225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL---TECLETILNKAQEPPKSKKVQ  301 (621)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH---HHHHHHHHHHHHSCCSCSSHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHhhccCccccccc
Confidence            4555555543    22             466777788888887432 34555544   234555554432210      


Q ss_pred             --C--hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCC
Q 038250          274 --C--PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI  349 (444)
Q Consensus       274 --~--~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  349 (444)
                        +  ..+.-.++.++..+...       .. +.. .++..|..+|.+.++.++-.++..|..++........+   ...
T Consensus       302 ~~n~~~aVl~ea~~~i~~l~~~-------~~-~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~---~~~  369 (621)
T 2vgl_A          302 HSNAKNAVLFEAISLIIHHDSE-------PN-LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV---KTH  369 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCC-------HH-HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH---HTT
T ss_pred             ccchHHHHHHHHHHHHHhcCCc-------HH-HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH---HHH
Confidence              2  26677777777777522       11 111 36778888888888899999999999998754222222   245


Q ss_pred             hHHHHHHHh-hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          350 FPVIVKKIL-RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       350 i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      ...++..+. ..+..++..|+.+|..++.      +.+..     .++..|...+... +...++.+...+..+
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~------~~Nv~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCD------RSNAQ-----QIVAEMLSYLETA-DYSIREEIVLKVAIL  431 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCC------HHHHH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcC------hhhHH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            667777777 6678888999999999887      33333     3455666766665 566666655533333

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.02  E-value=5.6e-05  Score=69.43  Aligned_cols=197  Identities=11%  Similarity=0.025  Sum_probs=133.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH-HHhcchhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250          222 MVWFLKSGDLSRRRNAVLVLRE-IVSSDHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTITSASATEKPI  299 (444)
Q Consensus       222 Lv~lL~~~~~~~~~~A~~~L~~-L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  299 (444)
                      +-..|.+.++..|..|+..|.. +..+.++....-+....++..|...+ ++. +..++..|+.+|..|+.+-.. +...
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~-~~f~   98 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKT-PGFS   98 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCT-TTSC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccc-cccc
Confidence            4556788899999999999999 85443332210112135677888888 555 789999999999999964210 0011


Q ss_pred             -HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc-CCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          300 -QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN-NSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       300 -~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                       .....  .++.+++.+.+....+++.+..+|..++..-+. ..... -...++.|+..|.+.+..+++.++.+|..+..
T Consensus        99 ~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             22222  789999999888888999999999888762210 00000 01245667777776788999999999999987


Q ss_pred             ccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          378 NEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      ..+.. ......-+....++.|..+|... .+.+|+.|...+..+.+.
T Consensus       176 ~~~~~-~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          176 EEKDG-YSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HCCSC-SHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HcCCc-chhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            54310 02222222368899999999777 899999999988777654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.98  E-value=8.6e-05  Score=68.16  Aligned_cols=191  Identities=8%  Similarity=0.079  Sum_probs=129.1

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHH-HhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKK-WTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      +...+.+.    +..++.+|+.+|.. ++...+.....-.+ ...+..|...+.  ++.    +..++..|+.+|..+. 
T Consensus        21 f~~~l~s~----~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~--~D~----n~~v~~~A~~al~~la-   89 (249)
T 2qk1_A           21 FQERITSS----KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDA----NIQAVALAAQSVELIC-   89 (249)
T ss_dssp             HHHHHTCS----SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH--HCS----CHHHHHHHHHHHHHHH-
T ss_pred             HHHHhhcC----CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc--cCC----CHHHHHHHHHHHHHHH-
Confidence            34455444    89999999999999 87543322110111 134555556662  122    6788899999998433 


Q ss_pred             CChhhh-hhcc-c--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          205 LAGEGL-TYLG-S--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       205 ~~~~~~-~~i~-~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                        ..-+ ..+. .  .-.+|.++..++.....+++.+..+|..++...+..... ..-..+++.|+..|++. ++.++..
T Consensus        90 --~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~  165 (249)
T 2qk1_A           90 --DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRME  165 (249)
T ss_dssp             --HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             --HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHH
Confidence              2222 2222 1  235888899888888999999999999886433221111 00135788899999988 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHH---HhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          281 SLVVVYRTITSASATEKPIQKF---VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i---~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      ++.+|..++....   .....+   +....+|.|.+++.+.+..+++.|..+|..++.
T Consensus       166 al~~l~~~~~~~~---~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          166 CTQLFNASMKEEK---DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHCC---SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999987653   111222   224689999999999999999999999998864

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.97  E-value=0.00021  Score=67.12  Aligned_cols=183  Identities=13%  Similarity=0.128  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      -.+..++++|.++    +.++.+.++..|..+-.++..-...++..||+..|+++...   +    +...+..++++|..
T Consensus       118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~---~----~gN~q~Y~L~AL~~  186 (339)
T 3dad_A          118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA---A----DHNYQSYILRALGQ  186 (339)
T ss_dssp             HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT---S----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh---c----ChHHHHHHHHHHHH
Confidence            4567889999876    78899999999999555667788899999999999999943   3    57789999999994


Q ss_pred             hcCCChhhhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccc---------cHHHHHHHhc-
Q 038250          202 LFPLAGEGLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG---------AIEPLFKLIK-  270 (444)
Q Consensus       202 ~l~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g---------~i~~Lv~ll~-  270 (444)
                       +-.+......++ +...|..+..++.+....+...|..+|..++..++.+...+.....         -...|+.+|+ 
T Consensus       187 -LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~  265 (339)
T 3dad_A          187 -LMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE  265 (339)
T ss_dssp             -HTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred             -HHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence             444555554444 6778999999999888999999999999997666655555422111         2668999997 


Q ss_pred             -CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH----hcCcHHHHHHHhhc
Q 038250          271 -EPICPTATKASLVVVYRTITSASATEKPIQKFV----DMGLVSLLLEMLVD  317 (444)
Q Consensus       271 -~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~----~~g~v~~Lv~lL~~  317 (444)
                       ++.+.+.+.+|...|-.+...-++ .+.+..++    +.|.=..+.+.|..
T Consensus       266 ~~~~D~elq~~amtLIN~lL~~apd-~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          266 KNGADPELLVYTVTLINKTLAALPD-QDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHccHHHHHHHHHhc
Confidence             223788999888877666544320 11123332    34544556665653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.94  E-value=1.6e-06  Score=71.35  Aligned_cols=119  Identities=12%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh
Q 038250          259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY  338 (444)
Q Consensus       259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~  338 (444)
                      ...++.|+.+|+++ ++.++..|+++|..+   ..    .        .++.|+++|.+.++.++..|+++|.++..   
T Consensus        11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~---~~----~--------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---   71 (131)
T 1te4_A           11 SSGLVPRGSHMADE-NKWVRRDVSTALSRM---GD----E--------AFEPLLESLSNEDWRIRGAAAWIIGNFQD---   71 (131)
T ss_dssp             ----------CCSS-CCCSSSSCCSSTTSC---SS----T--------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred             cccHHHHHHHhcCC-CHHHHHHHHHHHHHh---Cc----h--------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence            46788899999887 788888888777644   11    1        26899999999999999999999998763   


Q ss_pred             hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250          339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL  418 (444)
Q Consensus       339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l  418 (444)
                              ...++.|++.+...+..++..|+++|..+..               ..+++.|+.++++. ++.++..|...
T Consensus        72 --------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~-~~~vr~~A~~a  127 (131)
T 1te4_A           72 --------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETG-TGFARKVAVNY  127 (131)
T ss_dssp             --------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSC-CTHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence                    2347889999988899999999999998875               24678899999766 88899988876


Q ss_pred             HH
Q 038250          419 LK  420 (444)
Q Consensus       419 l~  420 (444)
                      |.
T Consensus       128 L~  129 (131)
T 1te4_A          128 LE  129 (131)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.90  E-value=0.0013  Score=64.97  Aligned_cols=226  Identities=12%  Similarity=0.078  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHhhcCCChhhhhhcccCC--cHHHHHHHHhc---------------C--CHHHHHHHHHHHHHHHhcchh
Q 038250          190 SVLEEILSTLTLLFPLAGEGLTYLGSAS--SMRCMVWFLKS---------------G--DLSRRRNAVLVLREIVSSDHR  250 (444)
Q Consensus       190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~A~~~L~~L~s~~~~  250 (444)
                      ..+.-++.+|. .+-..++.|..+.+.+  .++.++.+++.               +  ..+++-+++.+++-| +.+++
T Consensus       183 ~~~~i~v~~L~-~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~  260 (480)
T 1ho8_A          183 DTCYVCIRLLQ-ELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPV  260 (480)
T ss_dssp             HHHHHHHHHHH-HHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHH
T ss_pred             chHHHHHHHHH-HHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCHH
Confidence            34556777777 4445788898887543  36777665541               1  255678899999999 77777


Q ss_pred             hHHHhhcccccH--HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC-CchhHHH-HhcCcHHHHHHHhhcc---ccchH
Q 038250          251 KVNVLLDIEGAI--EPLFKLIKEPICPTATKASLVVVYRTITSASAT-EKPIQKF-VDMGLVSLLLEMLVDA---QRSLC  323 (444)
Q Consensus       251 ~~~~i~~~~g~i--~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~~~~~i-~~~g~v~~Lv~lL~~~---~~~~~  323 (444)
                      ..+.+ ...+.+  +.|+.+++....+.+.+-++.+|+|+......+ ......+ +..++ +++++.|...   |+++.
T Consensus       261 ~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~  338 (480)
T 1ho8_A          261 FANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR  338 (480)
T ss_dssp             HHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred             HHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence            77778 444544  678888887756899999999999998765200 0122223 33344 5677777632   66665


Q ss_pred             HHHHHHHHHh-------cCChhhHHHHh-----------------------cC--CCChHHHHHHHhh----------cC
Q 038250          324 EKALSVLDGL-------CSSDYGRGDAY-----------------------NN--SLIFPVIVKKILR----------VS  361 (444)
Q Consensus       324 ~~a~~~L~~L-------~~~~~~~~~i~-----------------------~~--~g~i~~Lv~ll~~----------~~  361 (444)
                      +..-.+...|       +..++...++.                       .+  -..+..|+++|.+          .+
T Consensus       339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d  418 (480)
T 1ho8_A          339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  418 (480)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence            5443333333       22233222220                       11  1267889998874          24


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      +.+...|+.=++.++++.|.|    +..+-+-|+=..++++|... ++.+|..|...++.+-.
T Consensus       419 ~~~laVAc~Digefvr~~P~g----r~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          419 KIIIQVALNDITHVVELLPES----IDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTH----HHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             cceEEeecccHHHHHHHCcch----hHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            566788999999999988753    33333689989999999988 99999999887665543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.89  E-value=0.0023  Score=66.69  Aligned_cols=263  Identities=10%  Similarity=0.052  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +.+.-++..+...+.+.++..+--|+..|..+..  ++    +.+ ..++.+.++|.+ .    +.++-|+..|+-++..
T Consensus       107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~-~----d~~~~VRK~A~~al~k  174 (621)
T 2vgl_A          107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVA-G----DTMDSVKQSAALCLLR  174 (621)
T ss_dssp             HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHC-S----SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhC-C----CCCHHHHHHHHHHHHH
Confidence            3344445555555544577788888888888753  22    222 356777777732 1    2268899999888885


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc----CC-C---
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK----EP-I---  273 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~----~~-~---  273 (444)
                      +...+++   .+...+.++.|..+|.+.++.++..|+.+|..++..+++.   +   ...+|.+++.|.    .+ .   
T Consensus       175 l~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~---~~~~~~~~~~L~~ll~~~~~~~~  245 (621)
T 2vgl_A          175 LYRTSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F---KTSVSLAVSRLSRIVTSASTDLQ  245 (621)
T ss_dssp             HHHHCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H---TTHHHHHHHHHHHHHHCCSSSCS
T ss_pred             HHHhChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H---HHHHHHHHHHHHHHHhCCCCCcc
Confidence            5554443   3333589999999998889999999999999997555432   2   134455554433    22 1   


Q ss_pred             --------ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------cc--ccchHHHHHHHHHHhc
Q 038250          274 --------CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------DA--QRSLCEKALSVLDGLC  334 (444)
Q Consensus       274 --------~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------~~--~~~~~~~a~~~L~~L~  334 (444)
                              ++-.+-..+..|..++..++  .+....+.+  .++.++..+.         +.  ...+.-.|+.++..+.
T Consensus       246 ~~~~~~~~~~w~qi~il~ll~~~~~~~d--~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~  321 (621)
T 2vgl_A          246 DYTYYFVPAPWLSVKLLRLLQCYPPPED--PAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD  321 (621)
T ss_dssp             TTEETTEESHHHHHHHHHHGGGSSSCSS--HHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhcCCCCchHHHHHHHHHHHhCCCCC--HHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC
Confidence                    35566666777766665322  123333333  3444443321         11  2367788888888887


Q ss_pred             CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh-cCCChHHHH
Q 038250          335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ-VGCADKTKE  413 (444)
Q Consensus       335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~-~~~~~~~k~  413 (444)
                      ..++....      ++..|..++.+.++.++..|+..|..++...++  ..    ++ ......++..+. +. +..+|.
T Consensus       322 ~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~----~~-~~~~~~i~~~L~~d~-d~~Ir~  387 (621)
T 2vgl_A          322 SEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HE----AV-KTHIETVINALKTER-DVSVRQ  387 (621)
T ss_dssp             CCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HH----HH-HTTHHHHHHHHTTCC-CHHHHH
T ss_pred             CcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HH----HH-HHHHHHHHHHhccCC-CHhHHH
Confidence            54443333      356788877777889999999999999986431  11    22 345677778787 55 788998


Q ss_pred             HHHHHHHHHH
Q 038250          414 HVSELLKLLN  423 (444)
Q Consensus       414 ~a~~ll~~l~  423 (444)
                      .|..+|-.+.
T Consensus       388 ~aL~lL~~l~  397 (621)
T 2vgl_A          388 RAVDLLYAMC  397 (621)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHc
Confidence            8888665543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.87  E-value=3e-05  Score=87.52  Aligned_cols=220  Identities=12%  Similarity=0.049  Sum_probs=142.8

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      |.+++..|+..|...+..+...-..-.....++.|+..|.+.++.+|..|+.+|..++....+  ..+   ..+++.|+.
T Consensus        19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~---~~i~~~Ll~   93 (1230)
T 1u6g_C           19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV---ETIVDTLCT   93 (1230)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH---HHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH---HHHHHHHHH
Confidence            688999998888744432211000001125678888999888999999999999999654333  222   356788898


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCCCCCch----hHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHH
Q 038250          268 LIKEPICPTATKASLVVVYRTITSASATEKP----IQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGD  342 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~----~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~  342 (444)
                      .+.++ ++.++..|+.+|..++..-.  ...    ...-.-...+|.|++.+. +.+..+++.|+.+|..++.....  .
T Consensus        94 ~l~d~-~~~vR~~a~~~L~~i~~~l~--~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~  168 (1230)
T 1u6g_C           94 NMLSD-KEQLRDISSIGLKTVIGELP--PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--L  168 (1230)
T ss_dssp             HTTCS-SSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--S
T ss_pred             HhcCC-cHHHHHHHHHHHHHHHHhCC--CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--H
Confidence            88877 67889999999999886543  110    011123458999999998 46788999999999998841100  0


Q ss_pred             Hh-cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250          343 AY-NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL  421 (444)
Q Consensus       343 i~-~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~  421 (444)
                      +. .....++.|+..+...+..+++.|+.+|..++...+.   . .    -...++.|+..|....+...+..+...+..
T Consensus       169 l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~-~----~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          169 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I-V----FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---H-H----HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            10 0012344455545555778999999999999985321   1 1    245688888877766334556666666655


Q ss_pred             HHhh
Q 038250          422 LNPH  425 (444)
Q Consensus       422 l~~~  425 (444)
                      +.+.
T Consensus       241 l~~~  244 (1230)
T 1u6g_C          241 ISRQ  244 (1230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=1.2e-05  Score=58.60  Aligned_cols=47  Identities=19%  Similarity=0.350  Sum_probs=38.5

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -.|.||.+++..-... .|+|.|...||.+||+.++..+||.|+....
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            4899999999854444 7999999999999994444589999998765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.83  E-value=0.0054  Score=65.78  Aligned_cols=242  Identities=14%  Similarity=0.035  Sum_probs=130.8

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--cccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--TCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS  215 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~  215 (444)
                      +++..+..|+-+|..+.....   .     .++..|...|.+.+.  +. ..+..++..|+-.|.....++.       +
T Consensus       407 ~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~-~~~~~ir~gAaLGLGla~~GS~-------~  470 (963)
T 4ady_A          407 SSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGD-EDVDVLLHGASLGIGLAAMGSA-------N  470 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSC-HHHHHHHHHHHHHHHHHSTTCC-------C
T ss_pred             CcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccc-cccHHHHHHHHHHHHHHhcCCC-------C
Confidence            355566777777777654422   1     146667777753210  00 0013456566666663222211       1


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      ..+++.|..+|...+...++.|+.+|+.+-.+ ..+.+       ++..|++.+.+..+..+++.++.+|..+..+.+  
T Consensus       471 eev~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~--  540 (963)
T 4ady_A          471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ--  540 (963)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG--
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh--
Confidence            23467777777777666667777777765111 11111       112222222222133444444444444433322  


Q ss_pred             CchhHH-----------HHhc----------------CcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250          296 EKPIQK-----------FVDM----------------GLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS  347 (444)
Q Consensus       296 ~~~~~~-----------i~~~----------------g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  347 (444)
                       +....           +++.                .+|+.|+..+. +.+..++..|+.+|+.+....         .
T Consensus       541 -e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~---------~  610 (963)
T 4ady_A          541 -ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD---------Y  610 (963)
T ss_dssp             -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---------C
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---------H
Confidence             00000           0011                13555666665 345667888888888776532         2


Q ss_pred             CChHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          348 LIFPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       348 g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ..++.+++++.. .++.++..|+.+|+.++..++.           ..++..|..++... ++.+++.|...|.++..-.
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-----------~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-----------QSAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-----------HHHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCC
Confidence            456777776654 5888999999999999875542           23455555555544 8889999988888876443


Q ss_pred             c
Q 038250          427 A  427 (444)
Q Consensus       427 ~  427 (444)
                      +
T Consensus       679 n  679 (963)
T 4ady_A          679 T  679 (963)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.80  E-value=0.00059  Score=64.13  Aligned_cols=144  Identities=15%  Similarity=0.107  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHHH-HhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHH
Q 038250          274 CPTATKASLVVVYR-TITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPV  352 (444)
Q Consensus       274 ~~~~~~~a~~aL~~-L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~  352 (444)
                      +.+.++.++.-|.. +..+..    ....+++.||+..|++++.+++...+..++.+|.+|-.+.++-..++.+...|..
T Consensus       131 ~~~~lr~aLfsLk~~~q~D~~----Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~  206 (339)
T 3dad_A          131 SGPELRRSLFSLKQIFQEDKD----LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW  206 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHTCTT----HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhcchH----HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH
Confidence            46677778888887 444554    8999999999999999999999999999999999999999988888667778888


Q ss_pred             HHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-----h--ChHHHHHHHHh---cCCChHHHHHHHHHHHHH
Q 038250          353 IVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-----V--GAFQKLLLLLQ---VGCADKTKEHVSELLKLL  422 (444)
Q Consensus       353 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-----~--g~l~~Ll~ll~---~~~~~~~k~~a~~ll~~l  422 (444)
                      ++.++.+....+.+.|+++|..++.++++. ......++.     .  --+..|+.+|+   ++ +..++-+|..|++-+
T Consensus       207 lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtLIN~l  284 (339)
T 3dad_A          207 LYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTLINKT  284 (339)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHHHHHH
Confidence            888877667788899999999999886542 222222221     1  23779999998   44 889999999977765


Q ss_pred             H
Q 038250          423 N  423 (444)
Q Consensus       423 ~  423 (444)
                      -
T Consensus       285 L  285 (339)
T 3dad_A          285 L  285 (339)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.59  E-value=0.0051  Score=60.72  Aligned_cols=248  Identities=12%  Similarity=0.117  Sum_probs=153.1

Q ss_pred             hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh---hhhhhccc-CCcHHHHHH-HHhcCCHHHHHHHHH
Q 038250          165 VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG---EGLTYLGS-ASSMRCMVW-FLKSGDLSRRRNAVL  239 (444)
Q Consensus       165 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~---~~~~~i~~-~g~i~~Lv~-lL~~~~~~~~~~A~~  239 (444)
                      ....++..++++|...  +    +.++....+..+..++..++   ..-..+.+ ......+.. ++..++.-....|..
T Consensus        74 ~~~~~~~~~l~lL~~~--~----~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~  147 (480)
T 1ho8_A           74 VNGKTLIPLIHLLSTS--D----NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFN  147 (480)
T ss_dssp             CSSTTHHHHHHHHHSC--C----CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHhhc--C----hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHH
Confidence            3446788899999532  2    57788888888887776655   22223232 222232333 223334444455665


Q ss_pred             HHHHHHhcchhhHHHhhcccccHH--HHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC--cHHHHHHHh
Q 038250          240 VLREIVSSDHRKVNVLLDIEGAIE--PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG--LVSLLLEML  315 (444)
Q Consensus       240 ~L~~L~s~~~~~~~~i~~~~g~i~--~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g--~v~~Lv~lL  315 (444)
                      ++..++......-+.+   .+.+.  -++..|.+..+....-.++.+|..|...++    .|..+.+++  .++++++++
T Consensus       148 l~~ll~~~~~~~~~~l---~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~----~R~~f~~~~~~~~~~l~~il  220 (480)
T 1ho8_A          148 VVSLLVQNGLHNVKLV---EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE----YRDVIWLHEKKFMPTLFKIL  220 (480)
T ss_dssp             HHHHHTSTTTCCHHHH---HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH----HHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHhHH---HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh----HHHHHHHcccchhHHHHHHH
Confidence            5555532211111111   12222  344556553234456678999999998876    888887654  478887766


Q ss_pred             hcc-----------------ccchHHHHHHHHHHhcCChhhHHHHhcCCCCh--HHHHHHHhhc-ChhHHHHHHHHHHHH
Q 038250          316 VDA-----------------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF--PVIVKKILRV-SDLATEFAVSILWKL  375 (444)
Q Consensus       316 ~~~-----------------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i--~~Lv~ll~~~-~~~~~~~a~~~L~~L  375 (444)
                      ...                 ...++-.++-+++.|+..++....+ .+.+.+  +.|+.+++.. .+.+...++.+|.|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nl  299 (480)
T 1ho8_A          221 QRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQC  299 (480)
T ss_dssp             HHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHT
T ss_pred             HHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            521                 2345788899999999988877777 555543  5677767654 678889999999999


Q ss_pred             ccccccchHHHHHHHH-hhChHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhcc
Q 038250          376 CKNEEREEKTAFAEAL-QVGAFQKLLLLLQVG--CADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       376 ~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~--~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ....+.+......+++ ..++ .+++..|+..  .++.+.+--..+...|...-.
T Consensus       300 l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~  353 (480)
T 1ho8_A          300 CSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ  353 (480)
T ss_dssp             TSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9864322233444444 4455 6677777765  367888888888888776544

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.58  E-value=7e-05  Score=52.21  Aligned_cols=48  Identities=17%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             ccccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .-.|.||++-..+|...+|.+     -|.+.|+.+|+..+++.+||.|+..+.
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            458999998888888778653     699999999996667889999998775

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.55  E-value=5.3e-05  Score=57.36  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=38.5

Q ss_pred             ccccccccCcCce-ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           38 RCPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        38 ~Cpic~~~~~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      .|++|.-.+..-. +++|+|.||..|+..|. .++...||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~-~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE-KKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH-HTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHH-hccCCCCcCcCCeeee
Confidence            6899988877654 45999999999999998 5778899999987753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.51  E-value=0.011  Score=50.46  Aligned_cols=105  Identities=12%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                      ...+..++.+|..+-+.++.+|..+|..++..-++.-+.+      +..|+-+++.+..-......+.++..++.-.   
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl------~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---  101 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM------LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---  101 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH------HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence            3455666666666666666666666666643333322222      3344445444323344444445555554422   


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  334 (444)
                          ..+++ +.||.|..-.+-+++.++-+...+|..++
T Consensus       102 ----Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIa  135 (253)
T 2db0_A          102 ----PELVK-SMIPVLFANYRIGDEKTKINVSYALEEIA  135 (253)
T ss_dssp             ----HHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred             ----HHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHH
Confidence                12221 23444444444444444444444444443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.47  E-value=0.016  Score=62.77  Aligned_cols=251  Identities=9%  Similarity=0.050  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHH
Q 038250          144 RDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCM  222 (444)
Q Consensus       144 ~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~L  222 (444)
                      +.|+..+..++....... ..-.-.+.+|.++..+   .+.    +..|+..|-.++..++..-..+  .+  ...+|.|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~dk----~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~  138 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNA---GNK----DKEIQSVASETLISIVNAVNPV--AI--KALLPHL  138 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHT---TCS----SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHh---cCC----chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHH
Confidence            888999999986543211 1111114455555555   222    4667776665555333222221  11  4568999


Q ss_pred             HHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250          223 VWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ  300 (444)
Q Consensus       223 v~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  300 (444)
                      +..|.+. .+..+..|..+|..|+...+   +.++. -..+||.+-..+-+. .+++++.|..++..+|..-.    |+.
T Consensus       139 ~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~----n~d  210 (986)
T 2iw3_A          139 TNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVD----NKD  210 (986)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCC----CTT
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCC----Ccc
Confidence            9999766 69999999999999964333   33321 246777777777766 68999999999999987654    332


Q ss_pred             HHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCC----hHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250          301 KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI----FPVIVKKILRVSDLATEFAVSILWKLC  376 (444)
Q Consensus       301 ~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~----i~~Lv~ll~~~~~~~~~~a~~~L~~L~  376 (444)
                      .   ...||.|++.+.+++.  +..++..|+.-.-..+      +++-.    +|.|..-|...+...+..++-+..|+|
T Consensus       211 ~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~------v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~  279 (986)
T 2iw3_A          211 I---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE------VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMC  279 (986)
T ss_dssp             T---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC------CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             h---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee------ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence            1   3479999999987643  5556666655443322      22223    444444444446677788999999999


Q ss_pred             cccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          377 KNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       377 ~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      +.-.+  +...... -...+|-|-.....-..|++|+.|...+..|.+...
T Consensus       280 ~lv~~--~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          280 KLVED--PQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             TTCCC--HHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCC--HHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            87432  3333221 244455555555566689999999999998877654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.41  E-value=0.0045  Score=66.99  Aligned_cols=252  Identities=11%  Similarity=0.057  Sum_probs=161.2

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh--hhh-hccc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE--GLT-YLGS  215 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~--~~~-~i~~  215 (444)
                      +...+..|...|..+...+...  ..+..+.+..|.+.+...        ... +.|+.++..++.....  ..+ .++ 
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k--------~~~-~~a~~~~~~~~~~~~~~~~~e~~~~-   94 (986)
T 2iw3_A           27 TADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDK--------KTA-ANAMQAVAHIANQSNLSPSVEPYIV-   94 (986)
T ss_dssp             CTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSH--------HHH-HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred             chhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhcc--------CCH-HHHHHHHHHHHHhcCCCCCcccchH-
Confidence            4567788888888887643211  222246777777777421        112 7888888755533321  111 122 


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT  295 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  295 (444)
                       +.++.++..+......++..|..++..|...-+..  .+   ..++|.|+..|++...-..+..|+.+|..|+....  
T Consensus        95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--  166 (986)
T 2iw3_A           95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--  166 (986)
T ss_dssp             -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH--
T ss_pred             -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH--
Confidence             45777777776667888888887877775433222  22   35689999999866457899999999999986532  


Q ss_pred             CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHH
Q 038250          296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKL  375 (444)
Q Consensus       296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L  375 (444)
                        ......=...||.+-+.+.+..++++..|..++..+|..-+++. +   ...||.||+.|.+.+.  ...++..|..-
T Consensus       167 --~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          167 --DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-I---ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-T---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             --HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-h---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence              12111224688888888888899999999999999987433322 2   2578999998876533  34455555544


Q ss_pred             ccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          376 CKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +.-.. -+.-..     +=.+|.|.+-|... +..+|++++.+..++++-
T Consensus       239 tfv~~-v~~~~l-----~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~l  281 (986)
T 2iw3_A          239 TFVAE-VTPATL-----SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKL  281 (986)
T ss_dssp             CCCSC-CCHHHH-----HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTT
T ss_pred             eeEee-ecchhH-----HHHHHHHHhhhccC-cchhheeeEEEEcchhhh
Confidence            33211 011111     22346666677666 888999999999888874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.34  E-value=0.0066  Score=58.24  Aligned_cols=233  Identities=13%  Similarity=0.046  Sum_probs=134.2

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      .|...++-.--.+..+++..++   .+   =++..|.+=+.   ++    ++-++-.|+++|. .+...+ .-     ..
T Consensus        80 ~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~---~~----N~~iR~lALRtL~-~I~~~~-m~-----~~  139 (355)
T 3tjz_B           80 NDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMT---GK----EDSYRGPAVRALC-QITDST-ML-----QA  139 (355)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHH---SS----CHHHHHHHHHHHH-HHCCTT-TH-----HH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcC---CC----cHhHHHHHHHHHh-cCCCHH-HH-----HH
Confidence            4776666666666677665221   11   12334444442   22    6889999999999 333222 11     13


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK  297 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  297 (444)
                      ..+.+.+.|.+.++.++..|+.+..+|...+++   .+   .+++..+-+++.+. ++.++-+|+.+|..+..++.    
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v---~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~----  208 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV---KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR----  208 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH---HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH----
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH---HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch----
Confidence            456677777888999999999999999544444   44   37899999999887 89999999999999986542    


Q ss_pred             hhHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK  374 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  374 (444)
                        .      ++..|+..+..+   ++-.+-..+.++..++..++..    .....++.+...|++.++.+.-.|++++..
T Consensus       209 --~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~  276 (355)
T 3tjz_B          209 --L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVN  276 (355)
T ss_dssp             --H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred             --H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence              1      345556555543   2333333334333443322111    112344555555666788888889999888


Q ss_pred             HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          375 LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       375 L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +...+    ...     ...++..|..++.+. ++.+|-.|...|+.+.
T Consensus       277 l~~~~----~~~-----~~~a~~~L~~fLss~-d~niryvaLr~L~~l~  315 (355)
T 3tjz_B          277 LPGCS----AKE-----LAPAVSVLQLFCSSP-KAALRYAAVRTLNKVA  315 (355)
T ss_dssp             --------------------CCCTHHHHHHSS-SSSSHHHHHHCC----
T ss_pred             ccCCC----HHH-----HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence            76521    111     134456677778777 7888988888555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.29  E-value=0.024  Score=60.85  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             cHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          218 SMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       218 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      +|+.|+..+.+ .+..+|..|+.+|+.++..++          ..++.++.+|.+..++.++..|+.+|..++.++.   
T Consensus       578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~---  644 (963)
T 4ady_A          578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG---  644 (963)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC---
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC---
Confidence            36666666554 467888888888888843332          2356677766554489999999999999998764   


Q ss_pred             chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                       + .     .+++.|..++.+.+..++..|+-+|+.+..
T Consensus       645 -~-~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          645 -L-Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             -C-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             -c-H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence             2 2     256678888888899999999999998875

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.067  Score=45.66  Aligned_cols=201  Identities=12%  Similarity=0.121  Sum_probs=128.7

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcH
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSM  219 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i  219 (444)
                      ..++.+|+..+..+++.-++-.+-     .+..|+.+++. ++     ...+-....++++......++-.     .+.+
T Consensus        46 wtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~k-sE-----aIpltqeIa~a~G~la~i~Pe~v-----~~vV  109 (253)
T 2db0_A           46 WTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKK-SE-----AIPLTQEIAKAFGQMAKEKPELV-----KSMI  109 (253)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHH-CC-----SHHHHHHHHHHHHHHHHHCHHHH-----HHHH
T ss_pred             HHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhh-cc-----cCchHHHHHHHHhHHHHhCHHHH-----HhhH
Confidence            458899999999998876653222     23344555542 11     24443344444442222222221     2446


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250          220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI  299 (444)
Q Consensus       220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  299 (444)
                      |.+..-.+-+++.++.+..-+|..++..+++...      +++.-+..++.++ +..-+-.|+..|..+   .+    |.
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~------~v~rdi~smltsk-d~~Dkl~aLnFi~al---Ge----n~  175 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSK-NREDKLTALNFIEAM---GE----NS  175 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHTSCS-SHHHHHHHHHHHHTC---CT----TT
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH------HHHHHHHHHhcCC-ChHHHHHHHHHHHHH---hc----cC
Confidence            6666666778999999999999999766665443      4566788899877 555555555544444   33    44


Q ss_pred             HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250          300 QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK  377 (444)
Q Consensus       300 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  377 (444)
                      ..-+.. .+|.|..+|.+.++-++..|+.+|.+|+.....-..++      ..-++-+...|+.++......|..|..
T Consensus       176 ~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          176 FKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            444443 79999999999999999999999999998555444441      122333444577777777777777654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.81  E-value=0.07  Score=51.07  Aligned_cols=168  Identities=15%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS  218 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~  218 (444)
                      |+..++.++..+-.+...+..- ..+--......+++++.+   .    |..++.-.--.+. +++..++  ..+   =+
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f-~~~e~t~lf~~v~kl~~s---~----d~~lKrLvYLyl~-~~~~~~~--e~i---Lv  105 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHL-GTTEATEAFFAMTKLFQS---N----DPTLRRMCYLTIK-EMSCIAE--DVI---IV  105 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHGGGGC---C----CHHHHHHHHHHHH-HHTTTSS--CGG---GG
T ss_pred             cHHHHHHHHHHHHHHHHCCCCC-chhHHHHHHHHHHHHhcC---C----CHHHHHHHHHHHH-HhCCCHH--HHH---HH
Confidence            4445555665555554443211 001111233344555532   1    4555554444444 3333211  111   24


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250          219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +..|.+-+.++++-++-.|..+|+++.  +++..+.      +.+.+-+.|.+. ++.+++.|+-+...|.....     
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~~~------l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~p-----  171 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQIT--DSTMLQA------IERYMKQAIVDK-VPSVSSSALVSSLHLLKCSF-----  171 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTHHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCH-----
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHHHH------HHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCH-----
Confidence            788888899999999999999999993  4454433      457788888888 89999999999999986543     


Q ss_pred             hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                        .+++ +.+..+-+++.+.++.++-+|+.+|..+..++
T Consensus       172 --e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          172 --DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             --HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             --HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence              2343 68999999999999999999999999998743

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.80  E-value=0.0002  Score=66.95  Aligned_cols=49  Identities=20%  Similarity=0.404  Sum_probs=38.2

Q ss_pred             CccccccccccCcC----cee----cCCcchhcHHHHHHHHHhcC---------CCCCCCCCcccC
Q 038250           35 NHFRCPISLDLMKD----PVT----LSTGITYDRENIEKWIHEDG---------NITCPVTNRVLT   83 (444)
Q Consensus        35 ~~~~Cpic~~~~~~----Pv~----~~cg~~~c~~ci~~~~~~~~---------~~~CP~c~~~~~   83 (444)
                      ..-.|+||...+.+    |-.    ..|||.|...|+.+|+....         .+.||.|+++++
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            34589999999887    422    26999999999999995322         157999998875

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.059  Score=49.70  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=115.1

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh--HH-HhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK--VN-VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~--~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      -+| |-.-|.+.++..|..|...|..+....+..  .. .+..-...++.+-..+.+. +..++..++.+|..++..-..
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhh
Confidence            345 557788999999999999998875433211  11 1101123455566677666 899999999999988754220


Q ss_pred             CCchhH--HHHhcCcHHHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250          295 TEKPIQ--KFVDMGLVSLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI  371 (444)
Q Consensus       295 ~~~~~~--~i~~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  371 (444)
                      ......  ...-...++.|++- |.+....++..+..+|..++........+      ++.++..+...++.++..++..
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l~~  162 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAANC  162 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHHHH
Confidence            000111  12224567777764 66777888888888887775322111111      2334444455688888888888


Q ss_pred             HHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          372 LWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       372 L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      |..+-...+.  ...-....-..+++.+..++.+. ++.+|+.|..++--+-+
T Consensus       163 l~~~l~~fg~--~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          163 VYELMAAFGL--TNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHTT--TTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCC--CcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence            8776542110  00000000123445566677777 99999999997666544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.17  E-value=0.054  Score=54.20  Aligned_cols=222  Identities=14%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHH--Hhhccccc-ccchHHHHHHHHHHHh
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAF--ETFSKTCL-DENVSVLEEILSTLTL  201 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL--~~~~~~~~-~~~~~~~~~a~~~L~~  201 (444)
                      +.+.|...+.+...+.+.-|+.+|+++.+....  .|..-...+..-.|+.+|  +.+.|=.. ..=..|+|.|+.+|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            444444444444889999999999998876432  222111114444444444  33322100 1135689999999985


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      +...+++       ..++..|+..+.....+++..+...|.++ .  +-.. .+   .++++.++..|++. +.+++..|
T Consensus       255 L~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~-~L---d~Vv~aVL~GL~D~-DDDVRAVA  319 (800)
T 3oc3_A          255 IYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVE-DK---DGLCRKLVSLLSSP-DEDIKLLS  319 (800)
T ss_dssp             HTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCC-CH---HHHHHHHHHHTTCS-SHHHHHHH
T ss_pred             HHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHH-HH---HHHHHHHHhhcCCc-ccHHHHHH
Confidence            4222222       45566666666778899999999999999 1  1111 13   57899999999988 78999999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-c-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-Q-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      +.+|.-++ ..+    ...     ..+..|.+.|.+- | .......+.+|+.|+..+.   ....+...||.|...+..
T Consensus       320 AetLiPIA-~p~----~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          320 AELLCHFP-ITD----SLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHTTSC-CSS----THH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTC
T ss_pred             HHHhhhhc-chh----hHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcC
Confidence            99999988 222    222     2455666667643 2 2235667788888887663   122445778888888877


Q ss_pred             cChhHHHHHHHHHHHHc
Q 038250          360 VSDLATEFAVSILWKLC  376 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~  376 (444)
                      .-..++..++.+|..+.
T Consensus       387 tITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            78889998888887766

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.00  E-value=0.0031  Score=48.85  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=28.5

Q ss_pred             Cccccccccc-cCcCcee--cCCcchhcHHHHHHHH
Q 038250           35 NHFRCPISLD-LMKDPVT--LSTGITYDRENIEKWI   67 (444)
Q Consensus        35 ~~~~Cpic~~-~~~~Pv~--~~cg~~~c~~ci~~~~   67 (444)
                      +++.|++|.+ ++.+|+.  +.|+|+||+.|++.+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4579999996 4789998  7999999999999854

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.072  Score=49.13  Aligned_cols=188  Identities=12%  Similarity=0.141  Sum_probs=114.1

Q ss_pred             HHHHHhhcccCChhHHHHHHHHHHHHhccCcccc--h-hHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          128 NCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK--R-CIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       128 l~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~--~-~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      -..|.+.    +...+.+|+..|..+....+...  . .+..- ..++.+-..+   .|.    +..++..++.+|..++
T Consensus        15 ~e~l~sk----~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l---~Ds----N~~v~~~al~~l~~~~   83 (278)
T 4ffb_C           15 EERLTYK----LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI---TDS----NVVAQEQAIVALNSLI   83 (278)
T ss_dssp             HHHTTCS----SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT---TCS----SHHHHHHHHHHHHHHH
T ss_pred             HHhcccC----cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh---ccc----hHHHHHHHHHHHHHHH
Confidence            3455554    88999999999998876533211  1 11112 2334444555   333    7889999998887444


Q ss_pred             CCChh---hhh--hcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250          204 PLAGE---GLT--YLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA  277 (444)
Q Consensus       204 ~~~~~---~~~--~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~  277 (444)
                      .....   .+.  ...-...++.|+.- |.+....++..|..+|..++..... .      .-+++.++..+.+. +|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~------~~~~e~l~~~l~~K-npkv  155 (278)
T 4ffb_C           84 DAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-I------TQSVELVIPFFEKK-LPKL  155 (278)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-S------HHHHHHHGGGGGCS-CHHH
T ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-H------HHHHHHHHHHHhcc-CHHH
Confidence            32111   111  11113457777764 6677888999988888877432211 1      12345566667777 8999


Q ss_pred             HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250          278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  335 (444)
                      +..++..|..+...-.....+....+. .+++.+..+|.+.++.+++.|..++..+-.
T Consensus       156 ~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          156 IAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            999999888876431100011222222 356678888999999999999999988765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.96  E-value=0.41  Score=42.86  Aligned_cols=183  Identities=13%  Similarity=0.121  Sum_probs=107.0

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhccccc----ccchHHHHHHHHHHHh
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTCL----DENVSVLEEILSTLTL  201 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~----~~~~~~~~~a~~~L~~  201 (444)
                      .+++|.+..   +.+...+-+..|+...+.++..+ +.+ ..||+..|+++|........    ..+.+.+..++.+|..
T Consensus         5 yi~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLka   80 (233)
T 2f31_A            5 YIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA   80 (233)
T ss_dssp             HHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc---chHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            455555442   22223334555554444444333 234 57889999999965422110    1256778899999995


Q ss_pred             hcCCChhh-hhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch--h-hHHHhh--------cccccHHHHHHHh
Q 038250          202 LFPLAGEG-LTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH--R-KVNVLL--------DIEGAIEPLFKLI  269 (444)
Q Consensus       202 ~l~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~--~-~~~~i~--------~~~g~i~~Lv~ll  269 (444)
                      ++ .+... ...+...+++..|+..|.+.++.++..++.+|..++...+  . ....+.        ....-..++|+.+
T Consensus        81 lm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l  159 (233)
T 2f31_A           81 FM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  159 (233)
T ss_dssp             HT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             Hh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            54 44444 4455568899999999998999999999999988864332  1 111110        1223566788888


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHH
Q 038250          270 KEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEM  314 (444)
Q Consensus       270 ~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~l  314 (444)
                      ++..+.+.+.+++..+-.+....++-   -..|..+...|..+.+-++
T Consensus       160 ~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l  207 (233)
T 2f31_A          160 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  207 (233)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence            76545666665555555555444310   1235555666655555444

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.88  E-value=0.2  Score=45.05  Aligned_cols=186  Identities=20%  Similarity=0.196  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-------cCC-CC---hHHHHHHHHHHHHHhcCCCCCCch
Q 038250          230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-------KEP-IC---PTATKASLVVVYRTITSASATEKP  298 (444)
Q Consensus       230 ~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-------~~~-~~---~~~~~~a~~aL~~L~~~~~~~~~~  298 (444)
                      +++.|+.|..-|..=-...++..-.+=...|.+..|++=+       ..+ -+   ..-+.+|+..|-.++++.+    .
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe----t   89 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE----T   89 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc----h
Confidence            5667887776666553333454444434556666665432       111 01   1235677778889999887    9


Q ss_pred             hHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250          299 IQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI  371 (444)
Q Consensus       299 ~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  371 (444)
                      +..++++...-.|..+|...     .+.++-.++++++.|++.+  +...- +.+.+.||..++.|..+++..+..|.-+
T Consensus        90 r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~f-LL~tEiiplCLrime~GselSKtvAtfI  168 (268)
T 2fv2_A           90 RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF-LLTTEIIPLCLRIMESGSELSKTVATFI  168 (268)
T ss_dssp             HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHH-HHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHH-HHhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence            99999999988888888744     3568889999999999633  22333 4778999999999999999999999998


Q ss_pred             HHHHccccccchHHHHHHHHh--------hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          372 LWKLCKNEEREEKTAFAEALQ--------VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       372 L~~L~~~~~~~~~~~~~~~~~--------~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..+-..     +....-++.        ..++..++.-+...+++++-+...+..--++.+
T Consensus       169 lqKIL~d-----d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          169 LQKILLD-----DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHS-----HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhcc-----chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            8887652     333333321        345555555555555777777766654444433

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.0053  Score=58.34  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             ccccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250           36 HFRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW  100 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~  100 (444)
                      .+.||+....|..|+.- .|.|.  |....+.......+.+.||+|++.+...++..+..+.++++..
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC  316 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence            38999999999999986 79997  8877777766456779999999999888999998888887543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.83  E-value=0.38  Score=43.28  Aligned_cols=198  Identities=11%  Similarity=0.113  Sum_probs=126.5

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHh-h---ccccc-ccchHHHHHHHHHHHhhcCCChhhhhh
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFET-F---SKTCL-DENVSVLEEILSTLTLLFPLAGEGLTY  212 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~-~---~~~~~-~~~~~~~~~a~~~L~~~l~~~~~~~~~  212 (444)
                      +++.+..|+..|.+--..-+.-...+=. -|.+..|++=+-+ +   +.+.. .....=...|++.|. .++.+++.|..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ-cvAshpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ-CVASHPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH-HHHHCTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH-HHHcCcchhhH
Confidence            3456777776666533222222222222 4777777654422 1   11111 111223457777777 66779999999


Q ss_pred             cccCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHH
Q 038250          213 LGSASSMRCMVWFLKSGD-----LSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVY  286 (444)
Q Consensus       213 i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  286 (444)
                      +.++...-.|-.+|+..+     ...|-.+..+++.|...+ .+.-..+ -..++||..++.++.+ +.-.+..|.-.+.
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fL-L~tEiiplCLrime~G-selSKtvAtfIlq  170 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFL-LTTEIIPLCLRIMESG-SELSKTVATFILQ  170 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHH-HHTTHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHH-HhhhHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence            999998888888887653     567788999999996443 3444444 3568999999999999 6778888888887


Q ss_pred             HHhcCCCCCCchhHHHHh-c-------CcHHHHHHHh-hccccchHHHHHHHHHHhcCChhhHHHH
Q 038250          287 RTITSASATEKPIQKFVD-M-------GLVSLLLEML-VDAQRSLCEKALSVLDGLCSSDYGRGDA  343 (444)
Q Consensus       287 ~L~~~~~~~~~~~~~i~~-~-------g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i  343 (444)
                      .+-.++.    .-..+.. .       .++..++.-+ .++++.+.++.+..-..|+.++..+..+
T Consensus       171 KIL~dd~----GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL  232 (268)
T 2fv2_A          171 KILLDDT----GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL  232 (268)
T ss_dssp             HHHHSHH----HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHhccch----hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7766653    3333321 1       1333333333 3557788899999999999988888776

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=95.63  E-value=0.0084  Score=54.13  Aligned_cols=49  Identities=18%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      -..|.+|.++...-+.. .|++.|...|+.+|++..+...||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            35799999999876655 49999999999999954556799999887543

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.35  E-value=0.012  Score=55.70  Aligned_cols=64  Identities=14%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             ccccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHH
Q 038250           36 HFRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQD   99 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~   99 (444)
                      .+.||+....|..|+.- .|.|.  |....+.......+.+.||+|++.+...++..+..+.++++.
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            48999999999999986 79998  888887777645677999999999988899999888888764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.34  E-value=0.17  Score=46.22  Aligned_cols=171  Identities=13%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHH-hhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc--
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFE-TFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG--  214 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~--  214 (444)
                      .|...+.+|+..|......++  ...+...+.   +...+. .+.++    +..+...++.+|..++..-.+.--.+.  
T Consensus        58 ~d~k~~~~ale~L~~~l~~~~--~~~~~~lDl---l~kw~~lr~~d~----N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           58 KDFKQHLAALDSLVRLADTSP--RSLLSNSDL---LLKWCTLRFFET----NPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCH--HHHHHTHHH---HHHHHHHHTTSC----CHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             CCHHHHHHHHHHHHHHhhhCh--HHHHHHHHH---HHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            477788889998888765433  222222222   223221 01122    677888888877743322111111222  


Q ss_pred             c-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          215 S-ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       215 ~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      + .-.+|.|+.-|......+|+.+-.+|..+...       . ....+.+.++.-+++. +...+..++..|..+-....
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~-~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------V-GPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------H-CHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------C-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Confidence            1 34579999988777888999988888777421       1 2224567777888777 79999999999998865543


Q ss_pred             CCCchhHHHHhcCcH---HHHHHHhhccccchHHHHHHHHHHhc
Q 038250          294 ATEKPIQKFVDMGLV---SLLLEMLVDAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       294 ~~~~~~~~i~~~g~v---~~Lv~lL~~~~~~~~~~a~~~L~~L~  334 (444)
                         ..     ...++   +.+.+++.+.+..+++.|+.++..+-
T Consensus       200 ---~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          200 ---IS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             ---SG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             ---CC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence               12     24578   99999999999999999999988654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.31  E-value=0.81  Score=49.92  Aligned_cols=225  Identities=8%  Similarity=0.005  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcc---c-CCcHH----HHHHHHhcC---CHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLG---S-ASSMR----CMVWFLKSG---DLSRRRNAVLVLREIVSSDHRKVNVLL  256 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~A~~~L~~L~s~~~~~~~~i~  256 (444)
                      +-..++.|+.++..+..........+.   . ....+    .++..|.+.   ++-+|..|+++|+.++..-  ..+.+ 
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l-  494 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQL-  494 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHH-
Confidence            345778888888744321110110010   0 02223    234445666   8899999999999995432  22333 


Q ss_pred             cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC----CCc-hhHHHHh--cCcHHHHHHHhhccc-----cchHH
Q 038250          257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA----TEK-PIQKFVD--MGLVSLLLEMLVDAQ-----RSLCE  324 (444)
Q Consensus       257 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~----~~~-~~~~i~~--~g~v~~Lv~lL~~~~-----~~~~~  324 (444)
                        ..+++.++..|.++ ++.++..|+.||.+++...+.    ... .+..+..  ...++.|+.++....     ....+
T Consensus       495 --~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          495 --IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             --HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             --HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence              36788999999877 789999999999999874210    001 1222221  235666666766531     11335


Q ss_pred             HHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHhhc-----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250          325 KALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKILRV-----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK  398 (444)
Q Consensus       325 ~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~  398 (444)
                      .++.+|..++.... .-... . ...++.|+..+...     +......+..+|..++....   ++ ........+++.
T Consensus       572 ~l~~al~~vv~~~~~~~~p~-~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~---~~-~~~~~~~~~~p~  645 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPL-F-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQ-NLPLLVDSMMPT  645 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGG-H-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC---GG-GHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhH-H-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC---cc-hHHHHHHHHHHH
Confidence            66677766653111 00000 0 12344555555431     33455567777777776421   11 223335677888


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          399 LLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      +..+|+.. .....+.+..++..+...
T Consensus       646 ~~~iL~~~-~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          646 FLTVFSED-IQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHHTT-CTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh-hHhhHHHHHHHHHHHHHh
Confidence            88888877 455566666665555444

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.90  E-value=1.1  Score=43.41  Aligned_cols=187  Identities=13%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhcccc----cccchHHHHHHHHHHH
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTC----LDENVSVLEEILSTLT  200 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~----~~~~~~~~~~a~~~L~  200 (444)
                      .++..|.+..   ..+.....+..|+......+..+ +.++ .+|+..|+++|.......    ...+...+..++.+|.
T Consensus        70 ~yi~~L~~~~---~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk  145 (383)
T 3eg5_B           70 MYIQELRSGL---RDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK  145 (383)
T ss_dssp             HHHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc---cchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            3566665542   22233445667776555555443 3455 788999999996542111    0224678889999999


Q ss_pred             hhcCCChhh-hhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hh--HHHh--------hcccccHHHHHHH
Q 038250          201 LLFPLAGEG-LTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RK--VNVL--------LDIEGAIEPLFKL  268 (444)
Q Consensus       201 ~~l~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~--~~~i--------~~~~g~i~~Lv~l  268 (444)
                      .++ .+... ...+.....|..|+..|.+.++.++..|..+|..+|-... ++  ...+        .....-..++|..
T Consensus       146 alm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~  224 (383)
T 3eg5_B          146 AFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG  224 (383)
T ss_dssp             HHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred             HHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            544 44444 4455678899999999999999999999999988874432 21  1111        0123457788888


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhcc
Q 038250          269 IKEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDA  318 (444)
Q Consensus       269 l~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~  318 (444)
                      |+++.+.+.+.+++..+-.+....++-   -..+..+...|..+.+-+ |+..
T Consensus       225 L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~  276 (383)
T 3eg5_B          225 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI  276 (383)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred             HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence            887545666665555555555544310   123455566766665555 5543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.62  E-value=0.45  Score=44.42  Aligned_cols=167  Identities=10%  Similarity=0.011  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHH-HHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc--C
Q 038250          140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLA-EAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS--A  216 (444)
Q Consensus       140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv-~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~--~  216 (444)
                      .+.+.-++..+|-++.+ +.....+.+.+.-..++ .++....+.   ..+..+--+++++. |+-.++..+..+..  .
T Consensus       116 ~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~---~~p~n~ml~lR~l~-NlF~~~~g~~~l~~~~~  190 (304)
T 3ebb_A          116 EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPK---GKPANQLLALRTFC-NCFVGQAGQKLMMSQRE  190 (304)
T ss_dssp             TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTT---SCHHHHHHHHHHHH-HGGGSHHHHHHHHHTHH
T ss_pred             HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCC---CChHHHHHHHHHHH-HccCCchhHHHHHHHHH
Confidence            34555566666665543 33333343332223444 333322111   13556788899999 88888887776653  2


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      ..++.+...+.+.+..++..++.++.|++...-..+. +-.....+..+..+++...+.++.-.++.||.+|...+.   
T Consensus       191 ~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~---  266 (304)
T 3ebb_A          191 SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDS---  266 (304)
T ss_dssp             HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH---
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCh---
Confidence            3445555555556889999999999999643211111 101112445555666655578999999999999997754   


Q ss_pred             chhHHHHh-cCcHHHHHHHhh
Q 038250          297 KPIQKFVD-MGLVSLLLEMLV  316 (444)
Q Consensus       297 ~~~~~i~~-~g~v~~Lv~lL~  316 (444)
                       ....+.+ -|+-..+-++..
T Consensus       267 -~~~~lak~l~~~~~v~~~~~  286 (304)
T 3ebb_A          267 -NAVQLAKSLGVDSQIKKYSS  286 (304)
T ss_dssp             -HHHHHHHHTTHHHHGGGGGG
T ss_pred             -hHHHHHHHcCHHHHHHHHHh
Confidence             4444444 344444434443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.57  E-value=0.37  Score=45.03  Aligned_cols=161  Identities=12%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH----HHHhc-CCHHHHHHHHHHHHH
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV----WFLKS-GDLSRRRNAVLVLRE  243 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~A~~~L~~  243 (444)
                      .+..|.+++ +|       ..+.+-.++.+++ ++..++..-..+.+.+.-..++    ..+.+ +.+..+..+++++.|
T Consensus       104 ~l~~l~kil-~W-------P~~~~fPvLDLlR-l~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~N  174 (304)
T 3ebb_A          104 QLQILWKAI-NC-------PEDIVFPALDILR-LSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCN  174 (304)
T ss_dssp             HHHHHHHHH-TS-------CTTTCHHHHHHHH-HHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cC-------CHHhHHHHHHHHH-HHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence            345566655 45       2334555666666 4445555444443322222333    32322 356678889999999


Q ss_pred             HHhcchhhHHHhhcc-cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccc
Q 038250          244 IVSSDHRKVNVLLDI-EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRS  321 (444)
Q Consensus       244 L~s~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~  321 (444)
                      + -.++..++.+... ..++..+...+.+. +..++..++.++.|++....++. ....  ...++..+..++. ..+.+
T Consensus       175 l-F~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~-~~~~--~~~ll~~l~~il~~~~d~E  249 (304)
T 3ebb_A          175 C-FVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDH-NIEG--KAQCLSLISTILEVVQDLE  249 (304)
T ss_dssp             G-GGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSC-CHHH--HHHHHHHHHHHHTTCCCHH
T ss_pred             c-cCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcC-CchH--HHHHHHHHHHHHhccCCHH
Confidence            9 5667677666322 23444555554444 67788888999999987632000 0011  1114445555554 34778


Q ss_pred             hHHHHHHHHHHhcCChhhHHHH
Q 038250          322 LCEKALSVLDGLCSSDYGRGDA  343 (444)
Q Consensus       322 ~~~~a~~~L~~L~~~~~~~~~i  343 (444)
                      ..-.++.+|++|...+....++
T Consensus       250 alyR~LvALGtL~~~~~~~~~l  271 (304)
T 3ebb_A          250 ATFRLLVALGTLISDDSNAVQL  271 (304)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCChhHHHH
Confidence            8899999999999765544444

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.40  E-value=1.9  Score=41.60  Aligned_cols=192  Identities=12%  Similarity=0.082  Sum_probs=111.2

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhccccc----ccchHHHHHHHHHHHh
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKTCL----DENVSVLEEILSTLTL  201 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~----~~~~~~~~~a~~~L~~  201 (444)
                      ++..|.+..   ......+-+..|+...+.++..+. .+ ..||+..|+.+|........    ..+...+..++.+|..
T Consensus         9 yv~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka   84 (386)
T 2bnx_A            9 YIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA   84 (386)
T ss_dssp             HHHHHTSCC---CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc---chHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            455555542   222223345555554444443332 34 36889999999965422111    1256788899999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-h--hHHHhh--------cccccHHHHHHHhc
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-R--KVNVLL--------DIEGAIEPLFKLIK  270 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~--~~~~i~--------~~~g~i~~Lv~ll~  270 (444)
                      ++.....-...+...+++..|+..|.+.++.++..++.+|..+|.... +  ....+.        ....-..+||..+.
T Consensus        85 lmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~  164 (386)
T 2bnx_A           85 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  164 (386)
T ss_dssp             HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred             HhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            444333333455577889999999988899999999988888864432 1  111110        12235667888887


Q ss_pred             CCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhccccch
Q 038250          271 EPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDAQRSL  322 (444)
Q Consensus       271 ~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~  322 (444)
                      .+.+.+.+.+++..+-.|....++-   -..|..+...|..+.+-++=...++.+
T Consensus       165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence            6645666665555555555544310   123566667766666544433334433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.94  E-value=1.3  Score=48.30  Aligned_cols=193  Identities=11%  Similarity=0.076  Sum_probs=108.0

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH-----HHHh----------------
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV-----WFLK----------------  227 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv-----~lL~----------------  227 (444)
                      .++..++++....+.  ..+..+...++..+.. +...+..+..+.....++.++     ..|.                
T Consensus       288 ~~~~~~~~l~~~~~~--~~~~~~~~~al~fl~~-~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~  364 (960)
T 1wa5_C          288 FIQITWNLLTSISNQ--PKYDILVSKSLSFLTA-VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY  364 (960)
T ss_dssp             HHHHHHHHHHHCCSC--TTSHHHHHHHHHHHHH-HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred             HHHHHHHHHHhcCCC--cCcHHHHHHHHHHHHH-HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence            344455555432111  1245677778888873 333444444443224444444     2221                


Q ss_pred             -------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc------CCCChHHHHHHHHHHHHHhcCCCC
Q 038250          228 -------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK------EPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       228 -------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~------~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                             +.....+..|..+|..|+....   +.+ . .-+++.+-..+.      +. +...++.|+.++..++.+.. 
T Consensus       365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v-~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~-  437 (960)
T 1wa5_C          365 IRRDLEGSDTDTRRRACTDFLKELKEKNE---VLV-T-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGN-  437 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHCH---HHH-H-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSC-
T ss_pred             HHhccCcccccCcHHHHHHHHHHHHHHcc---hhH-H-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhc-
Confidence                   0112456677788888854332   222 1 234555555555      33 56789999999999986532 


Q ss_pred             CCchhHHHHhc-----CcHHH----HHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          295 TEKPIQKFVDM-----GLVSL----LLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       295 ~~~~~~~i~~~-----g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                         .+..-...     ...+.    ++..|.+.   ++.++..|+++|+.++..- ....+   ...++.+++.|.+.+.
T Consensus       438 ---~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~  510 (960)
T 1wa5_C          438 ---ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEY  510 (960)
T ss_dssp             ---CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCH
T ss_pred             ---cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCCh
Confidence               11100000     22222    33344555   7789999999999998742 11111   2456777777776678


Q ss_pred             hHHHHHHHHHHHHccc
Q 038250          363 LATEFAVSILWKLCKN  378 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~  378 (444)
                      .++..|+.+|.+++..
T Consensus       511 ~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          511 VVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhc
Confidence            8999999999999873

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.65  E-value=1.7  Score=40.75  Aligned_cols=187  Identities=10%  Similarity=0.103  Sum_probs=130.2

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA  216 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~  216 (444)
                      +-+.+..+......+.+.....+...++  ..--..|..++.-+      +++++--.+-..|+ -|..++..-..+...
T Consensus        91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY------e~~diAl~~G~mLR-ecir~e~la~~iL~~  163 (341)
T 1upk_A           91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY------ESPEIALNCGIMLR-ECIRHEPLAKIILWS  163 (341)
T ss_dssp             CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG------GSTTTHHHHHHHHH-HHHTSHHHHHHHHHS
T ss_pred             CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh------ccchhHhHHHHHHH-HHHHhHHHHHHHhcc
Confidence            6777888888888877766554433222  01223344444322      13556666667777 556666666666677


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      +.+-.+......++=++...|..++..|...+... .+.+.. -.-++...-+||.++ +.-.++.++..|..|-.+.. 
T Consensus       164 ~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~-  241 (341)
T 1upk_A          164 EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRH-  241 (341)
T ss_dssp             GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGG-
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhCch-
Confidence            77888888888899999999999999987665532 233311 113566777888888 88899999999999998876 


Q ss_pred             CCchhHHH----HhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          295 TEKPIQKF----VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       295 ~~~~~~~i----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                         |...+    .+..-+..++.+|++.+..++-.|..+....+..+
T Consensus       242 ---N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          242 ---NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             ---GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             ---HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence               54443    34567899999999999999999999888765543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.58  E-value=3  Score=45.39  Aligned_cols=217  Identities=8%  Similarity=-0.030  Sum_probs=117.8

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH---h--cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL---K--SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI  262 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i  262 (444)
                      +-..++.|+.++..+...-.+..     ...++.++.++   .  ..++.++..++++|+.++..-..+.+.+   ..++
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l---~~vl  548 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI---PPAI  548 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH---HHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH---HHHH
Confidence            34577888888884332211111     23455555544   2  2378999999999999854322333334   3567


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCC--
Q 038250          263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSS--  336 (444)
Q Consensus       263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~--  336 (444)
                      +.|+..|.    +.++..|+.++.+++...      +..+..  .+.+..|.+++..+  +...+..++.++..++..  
T Consensus       549 ~~l~~~l~----~~v~~~A~~al~~l~~~~------~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          549 NLLVRGLN----SSMSAQATLGLKELCRDC------QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHHHHHH----SSCHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhC----hHHHHHHHHHHHHHHHHH------HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            77887773    568999999999999643      333332  34566666777653  456778888888887642  


Q ss_pred             hhhHHHHhcCCCChHHHHHHHhh----c--ChhHHHHHHHHHHHHccc---cccch-H-------HHHHHHHhhChHHHH
Q 038250          337 DYGRGDAYNNSLIFPVIVKKILR----V--SDLATEFAVSILWKLCKN---EEREE-K-------TAFAEALQVGAFQKL  399 (444)
Q Consensus       337 ~~~~~~i~~~~g~i~~Lv~ll~~----~--~~~~~~~a~~~L~~L~~~---~~~~~-~-------~~~~~~~~~g~l~~L  399 (444)
                      .+.....+  ...+++++..+..    .  ++.........|..|+..   -.+.. .       .....-+...+++.+
T Consensus       619 ~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l  696 (971)
T 2x1g_F          619 PEEIPKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF  696 (971)
T ss_dssp             TTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHH
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH
Confidence            23333331  1344555554442    1  222334444444444331   00000 0       000011234577777


Q ss_pred             HHHHhcC-CChHHHHHHHHHHHHHHh
Q 038250          400 LLLLQVG-CADKTKEHVSELLKLLNP  424 (444)
Q Consensus       400 l~ll~~~-~~~~~k~~a~~ll~~l~~  424 (444)
                      ..++... .++.+.+.+..++..+..
T Consensus       697 ~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          697 KRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHH
Confidence            7777653 256788887776666543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.19  E-value=1.4  Score=39.37  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             hhHHHHhcCcHHHHHHHhhcc-----------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDA-----------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      ....+ ..||+..|+++|..-           +...+..++.+|..|.....|...++.+..++..++..|.+.+..++.
T Consensus        36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~  114 (233)
T 2f31_A           36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  114 (233)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            56677 578999999998631           235678899999999999999999988888999988888777888889


Q ss_pred             HHHHHHHHHccccc-cc-hHHHHHHH------HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          367 FAVSILWKLCKNEE-RE-EKTAFAEA------LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       367 ~a~~~L~~L~~~~~-~~-~~~~~~~~------~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .++..|..+|..+. .| .......+      -+..-+..+++.+..+.+...+-.+..++|.+-..
T Consensus       115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~  181 (233)
T 2f31_A          115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  181 (233)
T ss_dssp             HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence            99999999998754 23 22222221      12335567888777554566777777777776544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.18  E-value=1.4  Score=40.16  Aligned_cols=178  Identities=10%  Similarity=0.066  Sum_probs=106.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHH
Q 038250          222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQK  301 (444)
Q Consensus       222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  301 (444)
                      +...|-+.+..-+..|+..|....+.+++  ..+.....+++-+.--+.+. ++.+...++.+|..+...-.. ...+..
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~-~~y~~~  126 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRD-TETPMS  126 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHh-ccccch
Confidence            34444455666666677777666443332  22311111233222223344 788888888888876421100 001111


Q ss_pred             HHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250          302 FVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       302 i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  380 (444)
                      -.+ .-.+|.|++-+.+..+.+++.+-.+|..|..       +.--....+.+++-+.+.+.+.++.++..+..+-...+
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            122 2378999999988888899998888887764       11111234566666666788899888888887755332


Q ss_pred             cchHHHHHHHHhhChH---HHHHHHHhcCCChHHHHHHHHHHH
Q 038250          381 REEKTAFAEALQVGAF---QKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       381 ~~~~~~~~~~~~~g~l---~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                      .  .       ...++   +.+..++.+. +..+|..|...+-
T Consensus       200 ~--~-------~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lv  232 (266)
T 2of3_A          200 I--S-------PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLV  232 (266)
T ss_dssp             S--G-------GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHH
T ss_pred             C--C-------ccccccchHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            1  1       24577   8888999877 8999999988443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.03  E-value=1.3  Score=41.56  Aligned_cols=118  Identities=9%  Similarity=0.082  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250          192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE  271 (444)
Q Consensus       192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~  271 (444)
                      ...+...|. ++-.+.+...-+++.+++..+.....-.+.++....+..|... |+....+. + .-...+|.+++.+.-
T Consensus       260 vtR~FDLL~-LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV-SDaksL~~-t-~L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          260 IIRTFDLLG-LLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV-SDAKALAK-T-PLENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHH-HHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH-TTCGGGGT-S-CCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeee-cchHHHhh-c-cccccchHHHHHhcc
Confidence            344555665 4555555567788899999999999999999999999999999 55444332 2 335789999999885


Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh
Q 038250          272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV  316 (444)
Q Consensus       272 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~  316 (444)
                      ..+.++.-...+.|.|...+..   ..+...+..|+|+.|-..+.
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq---~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQ---HVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCH---HHHHHHHHTTHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhccc---chHHHHhccCcHHHHHHHHh
Confidence            5478899999999999999886   34555678999999999875

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.89  E-value=1.7  Score=42.01  Aligned_cols=126  Identities=19%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             hhHHHHhcCcHHHHHHHhhc-----------cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVD-----------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      ....++ .+|+..|+.+|..           .+...+..++.+|..|.....|...++.+..+|..|+..+.+.+..++.
T Consensus       102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~  180 (383)
T 3eg5_B          102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  180 (383)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence            567776 7889999999862           1235678899999999999999999988899999999988777888999


Q ss_pred             HHHHHHHHHccccc-cchHHHHHHHH-------hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          367 FAVSILWKLCKNEE-REEKTAFAEAL-------QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       367 ~a~~~L~~L~~~~~-~~~~~~~~~~~-------~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .++..|..+|..+. .+-.+.+.+++       +..-+..++..|..+.+...+-.+..+++.+-.
T Consensus       181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~  246 (383)
T 3eg5_B          181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  246 (383)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence            99999999998753 21022222222       234577888888875466777777777777654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.27  E-value=1.1  Score=44.13  Aligned_cols=123  Identities=13%  Similarity=0.151  Sum_probs=86.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250          227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG  306 (444)
Q Consensus       227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g  306 (444)
                      .+++...+..|+..|...-...++..+      -+|..++.|.++. +..++..|...|-.+|.+ +    +...     
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~----~i~k-----  100 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDE-DVSIRRQAIKELPQFATG-E----NLPR-----  100 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-T----CHHH-----
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-h----hhhh-----
Confidence            356899999999999999777776554      4578999999998 899999999999999988 5    6555     


Q ss_pred             cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250          307 LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK  374 (444)
Q Consensus       307 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  374 (444)
                      +++.|+++|...++.-....-.+|..|-. -+-+       |.+..|..-+.++++.+++.++..|..
T Consensus       101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk-~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          101 VADILTQLLQTDDSAEFNLVNNALLSIFK-MDAK-------GTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHh-cChH-------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            46689999987655444444444444432 1111       233344555555677888888877754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.92  E-value=0.59  Score=51.31  Aligned_cols=143  Identities=9%  Similarity=0.056  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcchh--hHHHhhcccccHHHHHHHhcCCC----ChHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 038250          229 GDLSRRRNAVLVLREIVSSDHR--KVNVLLDIEGAIEPLFKLIKEPI----CPTATKASLVVVYRTITSASATEKPIQKF  302 (444)
Q Consensus       229 ~~~~~~~~A~~~L~~L~s~~~~--~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~aL~~L~~~~~~~~~~~~~i  302 (444)
                      .+...++.++++++.++..-.+  ....+   ..+++.|+.++.+..    ...++..++++|...+..-.    .....
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~----~~~~~  537 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK----AHWNF  537 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH----HCHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence            4789999999999999543322  33344   478999999987421    12334466677776654422    11122


Q ss_pred             HhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCC----ChHHHHHHHhh----cChhHHHHHHHHHH
Q 038250          303 VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSL----IFPVIVKKILR----VSDLATEFAVSILW  373 (444)
Q Consensus       303 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g----~i~~Lv~ll~~----~~~~~~~~a~~~L~  373 (444)
                      .. .++..|++.|.+.++.+++.|+++|.+||.  +.+..+. .+.|    -++.++..+..    -+......+..++.
T Consensus       538 L~-~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~  614 (1023)
T 4hat_C          538 LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG  614 (1023)
T ss_dssp             HH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            11 244445555555567899999999999996  3333441 1222    34444443332    35556677888888


Q ss_pred             HHcccccc
Q 038250          374 KLCKNEER  381 (444)
Q Consensus       374 ~L~~~~~~  381 (444)
                      .+....++
T Consensus       615 ~vi~~~~~  622 (1023)
T 4hat_C          615 IIISEERS  622 (1023)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHhCCC
Confidence            88776653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.46  E-value=1.6  Score=47.60  Aligned_cols=138  Identities=9%  Similarity=0.014  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250          229 GDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL  307 (444)
Q Consensus       229 ~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~  307 (444)
                      .+...++.|+.+|+.++....+. ...+   ..+++.+..+..++.++.++..++++|..++..-.   .+...+-  .+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l---~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~---~~~~~l~--~v  547 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQI---PRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLM---ENPAYIP--PA  547 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHH---HHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHH--HH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHH---HHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHh---cCHHHHH--HH
Confidence            46778999999999995433321 1122   12333222222221268899999999999886532   1222111  35


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCCChHHHHHHHhh--cChhHHHHHHHHHHHHcccc
Q 038250          308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNE  379 (444)
Q Consensus       308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~  379 (444)
                      ++.|+..| +  +.++..|+.+|..|+.  +.+..+. .-...+..+.+++.+  .+...+..+..++..++...
T Consensus       548 l~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          548 INLLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            66677777 3  7899999999999994  2333331 002334444555554  24677888888888887643

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.99  E-value=3.4  Score=44.80  Aligned_cols=173  Identities=12%  Similarity=0.096  Sum_probs=101.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh---cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250          227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI---KEPICPTATKASLVVVYRTITSASATEKPIQKFV  303 (444)
Q Consensus       227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll---~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~  303 (444)
                      .+.+...++.++.+|+.++....+.      ....++.++..+   .++ ++.++..++++|...+..-.   .+. ...
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~------~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~---~~~-~~l  527 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN------YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLA---DHP-VMI  527 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS------CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHH---HCH-HHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch------hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHH---hCH-HHH
Confidence            3457888999999999995433221      113344444443   223 67899999999998886532   022 233


Q ss_pred             hcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHH----HHhhc--ChhHHHHHHHHHHHHcc
Q 038250          304 DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK----KILRV--SDLATEFAVSILWKLCK  377 (444)
Q Consensus       304 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~----ll~~~--~~~~~~~a~~~L~~L~~  377 (444)
                      . .+++.|+..|.+  +.++..|+.+|..++.  +.+..+ .  ..++.++.    ++.+.  +...+..+..++..++.
T Consensus       528 ~-~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l-~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          528 N-SVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDL-P--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             T-TTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGC-T--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHH-H--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            3 578888888854  7899999999999984  222222 1  33444444    34432  45677888888888876


Q ss_pred             ccccchHHHHHHHHhhChHHHHHHHHh----cCCChHHHHHHHHHHHHH
Q 038250          378 NEEREEKTAFAEALQVGAFQKLLLLLQ----VGCADKTKEHVSELLKLL  422 (444)
Q Consensus       378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~----~~~~~~~k~~a~~ll~~l  422 (444)
                      ..+   .+..... -...++++...+.    ...++..+.....++..+
T Consensus       600 ~~~---~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          600 ALQ---VEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             TSC---HHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             cCC---HHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            432   1222221 1344555555443    332555665554455444

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=90.82  E-value=2.6  Score=46.18  Aligned_cols=138  Identities=9%  Similarity=0.033  Sum_probs=81.0

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI  262 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i  262 (444)
                      +=..++.++.+++.+...-.+....-.-..+++.|+.++..     ....++..++++|+..+.--..+.+.+   ..++
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L---~~vl  542 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL---RTVI  542 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH---HHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH---HHHH
Confidence            45678888999984443322221211114667888888764     223345567788876643222223333   2455


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh------cCcHHHHHHHhh----ccccchHHHHHHHHHH
Q 038250          263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD------MGLVSLLLEMLV----DAQRSLCEKALSVLDG  332 (444)
Q Consensus       263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~------~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~  332 (444)
                      ..|+..+.++ ++.+...|++++.+||..      .+..++.      .-.++.++..+.    .-+......+..+++.
T Consensus       543 ~~L~~~l~~~-~~~v~~~A~~al~~l~~~------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~  615 (1023)
T 4hat_C          543 LKLFEFMHET-HEGVQDMACDTFIKIVQK------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI  615 (1023)
T ss_dssp             HHHHHHTTCS-CHHHHHHHHHHHHHHHHH------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcC-CHHHHHHHHHHHHHHHHH------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            6666666555 688999999999999975      3444432      123454544433    2355556677777777


Q ss_pred             hcC
Q 038250          333 LCS  335 (444)
Q Consensus       333 L~~  335 (444)
                      +..
T Consensus       616 vi~  618 (1023)
T 4hat_C          616 IIS  618 (1023)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.63  E-value=4.6  Score=38.04  Aligned_cols=177  Identities=10%  Similarity=0.108  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh
Q 038250          237 AVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV  316 (444)
Q Consensus       237 A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~  316 (444)
                      +...|.-| -++.+...-+ +..+++..+..+++-+ +.++.++....|...+....    .+..=. ...+|-++..+.
T Consensus       263 ~FDLL~LL-mHdSnAIDGF-Vk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaks----L~~t~L-~e~LPFi~~~i~  334 (619)
T 3c2g_A          263 TFDLLGLL-LHDSDAIDGF-VRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKA----LAKTPL-ENILPFLLRLIE  334 (619)
T ss_dssp             HHHHHHHH-CCSHHHHHHH-HHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGG----GGTSCC-TTHHHHHHHHHH
T ss_pred             HHHHHHHH-hcccccccce-eecccceeEEEEeecC-CcHHHHhhhheeeeecchHH----Hhhccc-cccchHHHHHhc
Confidence            34444444 4555666666 4568899999999988 78999999999998876543    222211 357888898886


Q ss_pred             -ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC-------hhHHHHHHHHHHHHcc-----------
Q 038250          317 -DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS-------DLATEFAVSILWKLCK-----------  377 (444)
Q Consensus       317 -~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~-------~~~~~~a~~~L~~L~~-----------  377 (444)
                       +++.+++-...+.|+|...+..--+++....|+|+.|-+.+.+..       ..-+..|+++++|--+           
T Consensus       335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP  414 (619)
T 3c2g_A          335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP  414 (619)
T ss_dssp             HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence             668889999999999999988887777777899999999887632       2234556655555321           


Q ss_pred             -----ccccchHHHHHH---HHhhChHHHHHHHHhcCC--ChHHHHHHHHHHHHH
Q 038250          378 -----NEEREEKTAFAE---ALQVGAFQKLLLLLQVGC--ADKTKEHVSELLKLL  422 (444)
Q Consensus       378 -----~~~~~~~~~~~~---~~~~g~l~~Ll~ll~~~~--~~~~k~~a~~ll~~l  422 (444)
                           .-+-| +-..++   .++..++..|+.-|.-+.  .+.+-|--..+|+.+
T Consensus       415 m~NGqr~~~G-~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F  468 (619)
T 3c2g_A          415 TPNGETKTAG-PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSF  468 (619)
T ss_dssp             CTTSCCCCCC-HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHH
T ss_pred             cCCCccccCC-hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHH
Confidence                 00001 222233   336688888888777652  233444444455544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.48  E-value=4.1  Score=39.27  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             hhHHHHhcCcHHHHHHHhhcc-----------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVDA-----------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      ....|. .||+..|+.+|..-           +......++.+|..|.....|...++.+..++..++..|.+.+..++.
T Consensus        40 Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~  118 (386)
T 2bnx_A           40 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  118 (386)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            566665 68899999998621           235678899999999999999999988889999998888767788888


Q ss_pred             HHHHHHHHHccccc-cc-hHHHHHHH------HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          367 FAVSILWKLCKNEE-RE-EKTAFAEA------LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       367 ~a~~~L~~L~~~~~-~~-~~~~~~~~------~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .++..|..+|..+. .| .......+      .+..-+..|+..+..+.+...+-.+..++|.+-..
T Consensus       119 ~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~  185 (386)
T 2bnx_A          119 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  185 (386)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC
Confidence            89999999998654 22 22222111      12335567888887664667777777777776643

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=89.70  E-value=7.8  Score=41.90  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=95.4

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccC
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSA  216 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~  216 (444)
                      .+...+..++.++..++..-...     +...++.++..+....++    ++.++..++.++.. .+.. .++...+  .
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~----~~~vr~~~~~~l~~-~~~~l~~~~~~l--~  528 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISIS----NVQLADTVMFTIGA-LSEWLADHPVMI--N  528 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCC----SHHHHHHHHHHHHH-THHHHHHCHHHH--T
T ss_pred             CchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCC----cHHHHHHHHHHHHH-HHHHHHhCHHHH--H
Confidence            45667788888888887653321     124556666666433222    57789999998883 3221 1112222  4


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCCCC
Q 038250          217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIKEP-ICPTATKASLVVVYRTITSASA  294 (444)
Q Consensus       217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~  294 (444)
                      ..++.|+..|..  +.++..|+.+|.+++..   .+..+. -...++..|..++..+ .+...+..+..++..++..-. 
T Consensus       529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-  602 (963)
T 2x19_B          529 SVLPLVLHALGN--PELSVSSVSTLKKICRE---CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-  602 (963)
T ss_dssp             TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH---TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-
T ss_pred             HHHHHHHHHhCC--chHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-
Confidence            678888888854  88999999999999643   233331 1134555566666653 246788888999998875431 


Q ss_pred             CCchhHHHHhcCcHHHHHHHhh
Q 038250          295 TEKPIQKFVDMGLVSLLLEMLV  316 (444)
Q Consensus       295 ~~~~~~~i~~~g~v~~Lv~lL~  316 (444)
                       .+.....++ ..++++...+.
T Consensus       603 -~~~~~~~~~-~l~~~l~~~l~  622 (963)
T 2x19_B          603 -VEEILKNLH-SLISPYIQQLE  622 (963)
T ss_dssp             -HHHHHHHHH-HHHHHHHHHHH
T ss_pred             -HHHHHHHHH-HHHHHHHHHHH
Confidence             013333332 35666665553

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=89.58  E-value=0.45  Score=34.87  Aligned_cols=46  Identities=22%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      -.|.||.+-.-     +|...  .|+...|+.|.+-=. ..++..||.|+..+.
T Consensus        17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-keG~q~CpqCktrYk   69 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-REGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-HTSCSSCTTTCCCCC
T ss_pred             CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-hccCccccccCCccc
Confidence            58999998743     34443  699999999988545 588999999988775

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.13  E-value=7.2  Score=38.40  Aligned_cols=116  Identities=10%  Similarity=0.126  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHH
Q 038250          274 CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVI  353 (444)
Q Consensus       274 ~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L  353 (444)
                      +...++-|+..|..-..+-.   +.     +.-++.++++|..+.+..++..|+..|-.+|.+ +...++      +..|
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP---~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki------aDvL  105 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFP---EL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV------ADIL  105 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCG---GG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH------HHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCh---hh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH------HHHH
Confidence            57888888888877766543   12     233788899999988999999999999999987 555555      4588


Q ss_pred             HHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          354 VKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       354 v~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      +++|++.+.......-.+|..|-+..+            .|.+..|..-+..+ .+.+|+++..
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp------------k~tl~~lf~~i~~~-~e~~Rer~lk  156 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKMDA------------KGTLGGLFSQILQG-EDIVRERAIK  156 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhcCh------------HHHHHHHHHHHccc-chHHHHHHHH
Confidence            888887776666666666666666322            24444455544445 6777777655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=88.06  E-value=17  Score=33.96  Aligned_cols=247  Identities=10%  Similarity=0.064  Sum_probs=156.0

Q ss_pred             hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh----hcc-cCCcHHHHHHHHhcCCHHHHHHH
Q 038250          163 CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT----YLG-SASSMRCMVWFLKSGDLSRRRNA  237 (444)
Q Consensus       163 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~----~i~-~~g~i~~Lv~lL~~~~~~~~~~A  237 (444)
                      .+...|.+..|+..|...       +-+.+..+..+...++.....++.    .+. ....+..|+.--  +++++--.+
T Consensus        73 ei~~~dll~~Li~~l~~L-------~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~  143 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLI-------DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNC  143 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGS-------CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHH
T ss_pred             HHHHhCHHHHHHHhcccC-------CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHH
Confidence            345568888888888543       466777777776645554443332    222 222333333221  255666666


Q ss_pred             HHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC---cHHHHHHH
Q 038250          238 VLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG---LVSLLLEM  314 (444)
Q Consensus       238 ~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g---~v~~Lv~l  314 (444)
                      =.+|+.. ..++.....| -..+.+-.+.+.++.+ +-++...|..++..|-..+.   .....+.+..   .+...-+|
T Consensus       144 G~mLRec-ir~e~la~~i-L~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~L  217 (341)
T 1upk_A          144 GIMLREC-IRHEPLAKII-LWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKL  217 (341)
T ss_dssp             HHHHHHH-HTSHHHHHHH-HHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHH-HHhHHHHHHH-hccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHH
Confidence            6677777 4566666666 3457788889999888 78999999999998866543   2444555433   56667788


Q ss_pred             hhccccchHHHHHHHHHHhcCChhhHHHH---hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 038250          315 LVDAQRSLCEKALSVLDGLCSSDYGRGDA---YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL  391 (444)
Q Consensus       315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  391 (444)
                      |.+++--++..++.+|+.|-.+..+..-+   +.+..-+..++.+|.+.+..++-.|..++--...+ |..++......+
T Consensus       218 l~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL~  296 (341)
T 1upk_A          218 LHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDILL  296 (341)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHHH
T ss_pred             hcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHHH
Confidence            88888888999999999998776665544   35556777888888888999999999888776654 333344444333


Q ss_pred             --hhChHHHHHHHHhcC-CChHHHHHHHHHHHHHHhh
Q 038250          392 --QVGAFQKLLLLLQVG-CADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       392 --~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll~~l~~~  425 (444)
                        +...+.-|-.+.... .++.-.+.-+-+++.+..-
T Consensus       297 ~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          297 KNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             HTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence              344444444444333 1333334334455555543

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=87.09  E-value=0.61  Score=33.36  Aligned_cols=45  Identities=16%  Similarity=0.319  Sum_probs=33.8

Q ss_pred             CCccccccccccCcCceecC----CcchhcHHHHHHHHHhcC---CCCCCCC
Q 038250           34 PNHFRCPISLDLMKDPVTLS----TGITYDRENIEKWIHEDG---NITCPVT   78 (444)
Q Consensus        34 ~~~~~Cpic~~~~~~Pv~~~----cg~~~c~~ci~~~~~~~~---~~~CP~c   78 (444)
                      ...+.|.+|.+-++|-..+.    -+|.||-.|-..+++.++   ...||.-
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG   64 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   64 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence            34589999999999875543    369999999999986543   3467653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=84.87  E-value=25  Score=38.30  Aligned_cols=231  Identities=12%  Similarity=0.013  Sum_probs=129.0

Q ss_pred             CChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250          119 VSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILST  198 (444)
Q Consensus       119 ~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~  198 (444)
                      ++-+++..++....++.  .|.+.+.+|-.-|..+-+. ++         +......+|.....    .+..++--|+.+
T Consensus         3 m~~~~v~~Al~~~~~p~--sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~----~~~~vr~fa~~~   66 (980)
T 3ibv_A            3 MSAQDVENAVEAALDPS--VGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTK----YKPSTRLICLQT   66 (980)
T ss_dssp             CHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTT----SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCC----CCHHHHHHHHHH
Confidence            34456666664333321  2677888888888877543 43         44556666632110    146778888887


Q ss_pred             HHhhcC-CChh----hhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250          199 LTLLFP-LAGE----GLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL  268 (444)
Q Consensus       199 L~~~l~-~~~~----~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l  268 (444)
                      |...+. .+++    .+..+     =..|+.++.+     +...++...+.+|..++...  .-.   .=.+.++-|+.+
T Consensus        67 L~~~I~~l~~e~~~~~~~~l-----r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~--~p~---~Wp~~i~~l~~~  136 (980)
T 3ibv_A           67 LSEKVREWNNESNLLELQMI-----RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL--YPS---NWNDFFASLQGV  136 (980)
T ss_dssp             HHHHHHHCCTTTSHHHHHHH-----HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH--TTT---TCTTHHHHHHHH
T ss_pred             HHHHHHhCChhhhHHHHHHH-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh--Ccc---cCchHHHHHHHH
Confidence            774443 2223    23222     2334444432     34678888888888885332  111   114677888888


Q ss_pred             hcCCCCh-HHHHHHHHHHHHHhcCCCC----CC-----ch---hHHHHhc---CcHHHHHHHhhc----cccchHHHHHH
Q 038250          269 IKEPICP-TATKASLVVVYRTITSASA----TE-----KP---IQKFVDM---GLVSLLLEMLVD----AQRSLCEKALS  328 (444)
Q Consensus       269 l~~~~~~-~~~~~a~~aL~~L~~~~~~----~~-----~~---~~~i~~~---g~v~~Lv~lL~~----~~~~~~~~a~~  328 (444)
                      +..+ ++ ......+++|..|...-.+    .+     ++   +..+.+.   -+++..+.+|..    .++.++..++.
T Consensus       137 ~~~~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~  215 (980)
T 3ibv_A          137 IAAS-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ  215 (980)
T ss_dssp             HHHH-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCC-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            8765 33 3445555555533322000    00     00   2222221   124445555543    56778889999


Q ss_pred             HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250          329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  380 (444)
                      +|......-. -..+ .+...++.+.+.+.  ++..++.|+.+|..+.....
T Consensus       216 ~l~s~i~wi~-~~~i-~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~  263 (980)
T 3ibv_A          216 VYAQWVSWIN-INLI-VNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKM  263 (980)
T ss_dssp             HHHHHTTTSC-HHHH-HCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhcC-HHhh-hcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCC
Confidence            9998887432 2333 45556666666553  47889999999999887654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=83.61  E-value=51  Score=35.80  Aligned_cols=190  Identities=12%  Similarity=0.038  Sum_probs=105.4

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhH-hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCI-VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      +...+.-|+..|.+..+.-+.. ..+ ...+.=..|+.++...++.  ....-++.+...+|..+....-. .   .=.+
T Consensus        56 ~~~vr~fa~~~L~~~I~~l~~e-~~~~~~~~lr~~ll~~l~~~~~~--~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~  128 (980)
T 3ibv_A           56 KPSTRLICLQTLSEKVREWNNE-SNLLELQMIRDSVWSYIKELSFL--DEPAYISNAVQHLLTLLFLQLYP-S---NWND  128 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCTT-TSHHHHHHHHHHHHHHHHHCCST--TSCTHHHHHHHHHHHHHHHHHTT-T---TCTT
T ss_pred             CHHHHHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHhCc-c---cCch
Confidence            5678888888888777621111 000 0112223455555432210  11355777776666632221100 0   1156


Q ss_pred             cHHHHHHHHhcCCH-HHHHHHHHHHHHHHhc--c----------h---hhHHHhhcc--cccHHHHHHHhc----CCCCh
Q 038250          218 SMRCMVWFLKSGDL-SRRRNAVLVLREIVSS--D----------H---RKVNVLLDI--EGAIEPLFKLIK----EPICP  275 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~-~~~~~A~~~L~~L~s~--~----------~---~~~~~i~~~--~g~i~~Lv~ll~----~~~~~  275 (444)
                      .++.|+.++.+++. ........+|..|...  +          .   +.++.+...  .-+++....+|.    +. ++
T Consensus       129 ~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-~~  207 (980)
T 3ibv_A          129 FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-NY  207 (980)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-CH
Confidence            78888888876554 3344455555544211  0          0   113344110  011333334443    24 67


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC---ChhhHHHH
Q 038250          276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS---SDYGRGDA  343 (444)
Q Consensus       276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~---~~~~~~~i  343 (444)
                      .....++.+|..-...-+     ...+++.+.++.+.++|.+  +.+++.|+.+|..+..   .++.+..+
T Consensus       208 ~l~~~~L~~l~s~i~wi~-----~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~l  271 (980)
T 3ibv_A          208 GTVGLCLQVYAQWVSWIN-----INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNL  271 (980)
T ss_dssp             HHHHHHHHHHHHHTTTSC-----HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcC-----HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence            888889999988877653     6777888899999998874  6789999999988875   33444444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=82.03  E-value=2.8  Score=42.20  Aligned_cols=195  Identities=10%  Similarity=0.083  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHhhcCCChh--hhhhcccCCcHHHHHHHHh--------cC--CHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250          189 VSVLEEILSTLTLLFPLAGE--GLTYLGSASSMRCMVWFLK--------SG--DLSRRRNAVLVLREIVSSDHRKVNVLL  256 (444)
Q Consensus       189 ~~~~~~a~~~L~~~l~~~~~--~~~~i~~~g~i~~Lv~lL~--------~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~  256 (444)
                      =+++..|+..|+.++..+..  .|....+.+..-.|+.+|.        ++  -..+||.|+.+|+.+ ..-++-     
T Consensus       188 WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----  261 (800)
T 3oc3_A          188 WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----  261 (800)
T ss_dssp             HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----
T ss_pred             hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----
Confidence            46777777777766654432  1211112233444444442        11  267899999999998 443332     


Q ss_pred             cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250          257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       257 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  336 (444)
                        ..++..|+..+..+ .-+++..++-.|..+   .+    ....  =.++++.++.-|.+.+.+++..|+.+|.-++ .
T Consensus       262 --~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~D----LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~  328 (800)
T 3oc3_A          262 --NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KE----FVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I  328 (800)
T ss_dssp             --CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GG----GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C
T ss_pred             --HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HH----HHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c
Confidence              24455566555666 678999999999999   22    2222  2467888999999999999999999999888 2


Q ss_pred             hhhHHHHhcCCCChHHHHHHH----hhcCh--hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250          337 DYGRGDAYNNSLIFPVIVKKI----LRVSD--LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK  410 (444)
Q Consensus       337 ~~~~~~i~~~~g~i~~Lv~ll----~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~  410 (444)
                      +          ..++.++..+    .+-++  .........|..|+.+++.       .......||.|..+++.. ...
T Consensus       329 p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-------a~~dp~LVPRL~PFLRHt-ITS  390 (800)
T 3oc3_A          329 T----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-------LSIPPERLKDIFPCFTSP-VPE  390 (800)
T ss_dssp             S----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-------CCCCSGGGGGTGGGGTCS-SHH
T ss_pred             h----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-------cccChHHHHHHHhhhcCC-cHH
Confidence            2          3344444444    33222  2235566677777776431       111247788888888888 778


Q ss_pred             HHHHHHHHHH
Q 038250          411 TKEHVSELLK  420 (444)
Q Consensus       411 ~k~~a~~ll~  420 (444)
                      +|..+...|.
T Consensus       391 VR~AVL~TL~  400 (800)
T 3oc3_A          391 VRTSILNMVK  400 (800)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            8887766443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.86  E-value=0.28  Score=29.31  Aligned_cols=17  Identities=18%  Similarity=0.434  Sum_probs=12.9

Q ss_pred             CccccccccccCcCcee
Q 038250           35 NHFRCPISLDLMKDPVT   51 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~   51 (444)
                      +.|+||+|+..+..|-.
T Consensus         4 EGFiCP~C~~~l~s~~~   20 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADE   20 (34)
T ss_dssp             EEEECTTTCCEESSHHH
T ss_pred             cccCCcHHHHHcCCHHH
Confidence            45889999888877643

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=81.77  E-value=28  Score=38.11  Aligned_cols=226  Identities=12%  Similarity=0.057  Sum_probs=130.7

Q ss_pred             CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250          118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS  197 (444)
Q Consensus       118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~  197 (444)
                      |.+-..+..++..+.++    +...+.+|-..|..+-+. +         ++...+..+|.+.  .    +..++.-|+.
T Consensus        12 ~~~~~~l~~~l~~~~~p----~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s--~----~~~vr~~aa~   71 (1049)
T 3m1i_C           12 DLDIALLDQVVSTFYQG----SGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFS--T----NPQSKFIALS   71 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHC--S----CHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhC--C----CHHHHHHHHH
Confidence            44556777777776665    555677788888777433 3         3566677888531  1    5778888888


Q ss_pred             HHHhhcC-----CChhhhhhcccCCcHHHHHHHHhcC---------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHH
Q 038250          198 TLTLLFP-----LAGEGLTYLGSASSMRCMVWFLKSG---------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIE  263 (444)
Q Consensus       198 ~L~~~l~-----~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~  263 (444)
                      +|...+.     .+++.|..|.     ..|+.++.+.         +..++...+.++..++..+-.  .   .=.+.++
T Consensus        72 ~Lk~~i~~~W~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p--~---~Wp~ll~  141 (1049)
T 3m1i_C           72 ILDKLITRKWKLLPNDHRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP--Q---NWPEFIP  141 (1049)
T ss_dssp             HHHHHHHHTGGGSCHHHHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT--T---TCTTHHH
T ss_pred             HHHHHHHhhCccCCHHHHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc--c---cchHHHH
Confidence            8875442     2334444332     2333433321         356778888888888543211  1   1246789


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCC----CC-CCchh-----HHHHhc--CcHHHHHHHhhcc-ccchHHHHHHHH
Q 038250          264 PLFKLIKEPICPTATKASLVVVYRTITSA----SA-TEKPI-----QKFVDM--GLVSLLLEMLVDA-QRSLCEKALSVL  330 (444)
Q Consensus       264 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----~~-~~~~~-----~~i~~~--g~v~~Lv~lL~~~-~~~~~~~a~~~L  330 (444)
                      .|+.+++ . ++...+.++.+|..|+..-    .+ ....+     ..+.+.  .++..+..+|... +..++..++.++
T Consensus       142 ~L~~~~~-~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l  219 (1049)
T 3m1i_C          142 ELIGSSS-S-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESL  219 (1049)
T ss_dssp             HHHHHHT-T-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHc-c-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999996 3 4666778888888776321    00 00011     222221  1233344445433 456888899999


Q ss_pred             HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250          331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN  378 (444)
Q Consensus       331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  378 (444)
                      ......-.. ..+ .+...++.+.+.+. .++..+..|+.+|..+...
T Consensus       220 ~~~l~wi~~-~~~-~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          220 LRYLHWIPY-RYI-YETNILELLSTKFM-TSPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHTTTSCT-HHH-HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhCCH-HHH-hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence            876653332 223 34455555553232 3667778888888877754

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=81.69  E-value=23  Score=38.75  Aligned_cols=117  Identities=7%  Similarity=0.024  Sum_probs=63.7

Q ss_pred             chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 038250          169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLR  242 (444)
Q Consensus       169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~  242 (444)
                      +++.+...+...-.+. ..+-..++.|+.+++ .++.. .+....-.-...++.|+.+...     .++-++..++++++
T Consensus       448 ~l~~v~~~l~~~l~~~-~~~W~~~eaal~alg-sia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg  525 (1049)
T 3m1i_C          448 TEEIMISKLARQIDGS-EWSWHNINTLSWAIG-SISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG  525 (1049)
T ss_dssp             HHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHH-HTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-HHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence            4455555554321110 124566788888888 33321 1110000001233333333221     12334445778888


Q ss_pred             HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250          243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS  291 (444)
Q Consensus       243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  291 (444)
                      ..+.-.....+.+   ..+++.|+..+.++ ++.++..|+.++.+++..
T Consensus       526 ry~~~~~~~~~~l---~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          526 QYPRFLKAHWNFL---RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HCHHHHHHCHHHH---HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHH---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            7643222333444   36788888888876 799999999999999975

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=81.44  E-value=55  Score=35.89  Aligned_cols=133  Identities=13%  Similarity=0.125  Sum_probs=78.1

Q ss_pred             CcHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh----cCCCChHHHHHHHHHHHHH
Q 038250          217 SSMRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI----KEPICPTATKASLVVVYRT  288 (444)
Q Consensus       217 g~i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~~a~~aL~~L  288 (444)
                      ..+..+..++.+    .++.+++.+..+++.|....-......  ....++.+...|    ..+ +.+.+..++.+|.|+
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c--~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC--PDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC--CGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcc
Confidence            346666677754    467788888888888842211110111  123355555544    455 577788899999999


Q ss_pred             hcCCCCCCchhHHHHhcCcHHHHHHHhhc-----c--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-
Q 038250          289 ITSASATEKPIQKFVDMGLVSLLLEMLVD-----A--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-  360 (444)
Q Consensus       289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-  360 (444)
                      ....              .++.|..+|..     .  ...++..|+++|..++....  ..+      -+.+..+..+. 
T Consensus       468 g~p~--------------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--~~v------~~il~~i~~n~~  525 (1056)
T 1lsh_A          468 GQPN--------------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--RKV------QEIVLPIFLNVA  525 (1056)
T ss_dssp             TCGG--------------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--HHH------HHHHHHHHHCTT
T ss_pred             CChh--------------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--HHH------HHHHHHHhcCCC
Confidence            7532              47777777742     1  23577889999999875311  111      23455666543 


Q ss_pred             -ChhHHHHHHHHHHH
Q 038250          361 -SDLATEFAVSILWK  374 (444)
Q Consensus       361 -~~~~~~~a~~~L~~  374 (444)
                       ...++-.|+.+|..
T Consensus       526 e~~EvRiaA~~~Lm~  540 (1056)
T 1lsh_A          526 IKSELRIRSCIVFFE  540 (1056)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence             55666666655543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=81.05  E-value=22  Score=39.05  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHh--
Q 038250          215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTI--  289 (444)
Q Consensus       215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~--  289 (444)
                      ...++..+.+++.++.....+ |+.+|..+........       ..+..+..+++++   .++.+.+.+.-++.+|.  
T Consensus       354 T~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~-------e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k  425 (1056)
T 1lsh_A          354 TSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATR-------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR  425 (1056)
T ss_dssp             SHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCH-------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCH-------HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Confidence            345677777778776544433 4444443311111112       2344455666543   24556666666666554  


Q ss_pred             --cCCCCCCchhHHHHhcCcHHHHHHHh----hccccchHHHHHHHHHHhcC
Q 038250          290 --TSASATEKPIQKFVDMGLVSLLLEML----VDAQRSLCEKALSVLDGLCS  335 (444)
Q Consensus       290 --~~~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~~~~~~a~~~L~~L~~  335 (444)
                        .++.    .+.    ...|+.+.+.|    ..++..-+..++.+|+|+..
T Consensus       426 ~c~~~~----~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          426 YCANTV----SCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHTTCS----SCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HhccCC----CCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence              3322    211    12345555444    45566667889999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	4e-19
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-14
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	3e-13
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-08
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.001
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.001
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.4 bits (195), Expect = 4e-19
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P +FRCPISL+LMKDPV +STG TY+R +I+KW+ + G+ TCP +   L      PN+ +
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 94  RRMIQDWCVENRSYGIE 110
           + +I  WC  N   GIE
Sbjct: 65  KSLIALWCESN---GIE 78

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (160), Expect = 2e-14
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 34  PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
           P++    IS +LM++P    +GITYDR++IE+ +        PVT   LT  + IPN  +
Sbjct: 5   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 94  RRMIQDWCVEN 104
           + +I  +  EN
Sbjct: 64  KEVIDAFISEN 74

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 28  EMELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86
           E      + F  PI   LM DPV L +  +T DR  I + +  D   T P     LT  +
Sbjct: 14  ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ--TDPFNRSPLTMDQ 71

Query: 87  PIPNHTIRRMIQDWCVENRSY 107
             PN  ++  IQ W  E +  
Sbjct: 72  IRPNTELKEKIQRWLAERKQQ 92

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVTNRVLTSFEPIPNHTI 93
              CPI L+L+K+PV+      + +  + K +++  G   CP+    +T      +   
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 94 RRMIQ 98
           ++++
Sbjct: 80 SQLVE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 39 CPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89
          C I  +  KD      G       +  W   +G   CP     +   EPI 
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIKGTEPIV 75

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 39 CPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89
          C IS  + + PV    +   +++  +E+++ +      P+TN  L+  E + 
Sbjct: 3  CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVE 52

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE-PIPNHTI 93
              C I   ++ DPV  S    + R  I + +   G+  CP         +   P  + 
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGS-YCPSCRYPCFPTDLESPVKSF 80

Query: 94 RRMI 97
            ++
Sbjct: 81 LNIL 84

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 5/40 (12%)

Query: 38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPV 77
          RC       K P  L    T     +E        + CP+
Sbjct: 8  RCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPI 42

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 35 NHFRCPISLDLMKDPVTLST-GITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93
             RC    +++++PV L      +    +   I       CPV        +   N  +
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI----GTGCPVCYTPAWIQDLKINRQL 76

Query: 94 RRMIQ 98
            MIQ
Sbjct: 77 DSMIQ 81

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 3/136 (2%)

Query: 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281
           +V  + S +L  +  A    R+++S + +     +   G I      + +  C      S
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77

Query: 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341
              +      AS T +  +  VD G +   + +L      + E+A+  L  +        
Sbjct: 78  AWALTNI---ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 342 DAYNNSLIFPVIVKKI 357
           D          ++  +
Sbjct: 135 DLVIKHGAIDPLLALL 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.9
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.79
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.79
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.75
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.54
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.52
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.44
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.44
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.14
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.13
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.02
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.94
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.92
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.74
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.63
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.62
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.59
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.55
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.46
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.44
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.39
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.23
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.21
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.09
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.95
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.95
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.85
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.8
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.8
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.69
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.55
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.55
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.54
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.24
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.06
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.74
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	96.0
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.6
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.95
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.74
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.55
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.31
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	89.54
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	89.38
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	88.57
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.27
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.64

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.4e-24  Score=213.16  Aligned_cols=286  Identities=14%  Similarity=0.124  Sum_probs=237.4

Q ss_pred             hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc-cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR-NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      ...|+.+++.|.+.    +.+.+..|+.+|+++...+.. ..+.+++.|++|.|+++|++.  .    +++++..|+++|
T Consensus        12 ~~~i~~lv~~l~s~----~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~--~----~~~v~~~a~~~L   81 (434)
T d1q1sc_          12 NWSVEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----CSPIQFESAWAL   81 (434)
T ss_dssp             SCCHHHHHHHHTSS----CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG--G----GHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC--C----CHHHHHHHHHHH
Confidence            45688899988876    899999999999998754332 356789999999999999532  1    578999999999


Q ss_pred             HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---------
Q 038250          200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK---------  270 (444)
Q Consensus       200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~---------  270 (444)
                      ..+++.+++.+..+.+.|+++.|+.+|.+++.++++.|+++|.+|+..+++.+..+ ...|+++.|+.++.         
T Consensus        82 ~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i-~~~~~~~~l~~~l~~~~~~~~~~  160 (434)
T d1q1sc_          82 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV-IKHGAIDPLLALLAVPDLSTLAC  160 (434)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHHTCSSCGGGSCH
T ss_pred             HHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH-HHhhhhhHHHHHHHhcccccchH
Confidence            95556677888899999999999999999999999999999999977777777777 44677777776653         


Q ss_pred             --------------------------------------CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHH
Q 038250          271 --------------------------------------EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLL  312 (444)
Q Consensus       271 --------------------------------------~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv  312 (444)
                                                            ++ +++++..++++|.+|+.+..   .....+.+.|+++.|+
T Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~~~~Lv  236 (434)
T d1q1sc_         161 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLV  236 (434)
T ss_dssp             HHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCH---HHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhh---hhHHHHhhcccchhcc
Confidence                                                  33 67788888888888887754   3556677899999999


Q ss_pred             HHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh
Q 038250          313 EMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ  392 (444)
Q Consensus       313 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~  392 (444)
                      +++.+++..++..++.+|.+++..++.....+.+.|+++.++.++.+.++.+++.|+++|.+++..    +.+....+.+
T Consensus       237 ~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~i~~  312 (434)
T d1q1sc_         237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVN  312 (434)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHH
T ss_pred             cccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc----cchhHHHHhh
Confidence            999999999999999999999986655544447889999999999888899999999999999984    3556666778


Q ss_pred             hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          393 VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       393 ~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      .|+++.++.++.++ +..++..|.+++..+..+.
T Consensus       313 ~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         313 HGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             TTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHS
T ss_pred             hhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcC
Confidence            99999999999998 8999999999887776543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.8e-24  Score=213.69  Aligned_cols=284  Identities=14%  Similarity=0.116  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      -++.++..|...   .+...+..|++.|.+++..++.....+.+.|+++.|+.+|.+.       +.++++.|+++|..+
T Consensus       120 ~i~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~-------~~~i~~~a~~~L~ni  189 (503)
T d1wa5b_         120 VVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNV  189 (503)
T ss_dssp             CHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC-------ChhHHHHHHHHHHHH
Confidence            356677776654   2677899999999999988888888899999999999999643       578999999999955


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      +..+++++..+.+.|+++.|+.++.+.+..++..++++|.+|+...+...... ...|++|.|+.++.+. +++.+..++
T Consensus       190 a~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~-~~~~~l~~l~~~l~~~-d~~~~~~~~  267 (503)
T d1wa5b_         190 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS-VVSQALPTLAKLIYSM-DTETLVDAC  267 (503)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH-HHGGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHH-HHHHHHHHHHHHhccc-cHHHHHHHH
Confidence            56677899999999999999999999999999999999999975544433333 3368999999999988 899999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      ++|.+|+.+..   .....+++.|+++.|+.++.+++..++..++.+|.+++.+.+.....+.+.|+++.|..++.+.++
T Consensus       268 ~~l~~l~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~  344 (503)
T d1wa5b_         268 WAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE  344 (503)
T ss_dssp             HHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred             HHHHhhccCCc---hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCH
Confidence            99999998764   356778999999999999999999999999999999998777777666889999999999988889


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~  426 (444)
                      .+++.++++|.+++.+    ++.....+++.|+++.++.++.++ +..++..|.+++..+..+.
T Consensus       345 ~i~~~~~~~l~nl~~~----~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         345 NIKKEACWTISNITAG----NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGG  403 (503)
T ss_dssp             HHHHHHHHHHHHHTTS----CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhc----cHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcc
Confidence            9999999999999984    466777788999999999999999 8899999999887776554

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.3e-25  Score=222.95  Aligned_cols=276  Identities=13%  Similarity=0.096  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHh-hcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV-DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      ..|+.|++.|.+.    |...+..|+..|..+++++. .+..++ ..|+++.|+.+|++.  +    +.++++.|+.+|.
T Consensus        17 ~aip~L~~lL~~~----~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~--~----~~~~~~~a~~~L~   85 (529)
T d1jdha_          17 RAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT--N----DVETARCTAGTLH   85 (529)
T ss_dssp             CHHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC--C----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCC--C----CHHHHHHHHHHHH
Confidence            4578888888664    88899999999999997754 455444 468899999999642  2    5789999999999


Q ss_pred             hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                       .++.+++++..+++.|+++.|+.+|++++++++..|+++|++|+..++..+..+ ...|+|++|+.+|+++ +++++..
T Consensus        86 -~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~g~i~~Lv~lL~~~-~~~~~~~  162 (529)
T d1jdha_          86 -NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFLAI  162 (529)
T ss_dssp             -HHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH-HHHTHHHHHHHGGGCC-CHHHHHH
T ss_pred             -HHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHH-HhcCCchHHHHHHHcc-ChHHHHH
Confidence             788899999999999999999999999999999999999999987777778877 5689999999999988 8999999


Q ss_pred             HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250          281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR  359 (444)
Q Consensus       281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~  359 (444)
                      ++++|.+++..+.   .++..+.+.|+++.|+.++... ...+++.++.+|.+++.+++++..+ .+.|+++.|+.++.+
T Consensus       163 a~~~L~~l~~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~-~~~g~~~~L~~ll~~  238 (529)
T d1jdha_         163 TTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHLTD  238 (529)
T ss_dssp             HHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH-HHTTHHHHHHTTTTS
T ss_pred             HHHHHHHHhhhhh---HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchh-hhhhhhhhHHHHhcc
Confidence            9999999998764   4678888999999999999765 5678899999999999999998888 888999999999988


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      .+..++..++++|.+++.....       .....|+++.|+.++.++ +..+++.|..+|..+.
T Consensus       239 ~~~~~~~~a~~~l~~ls~~~~~-------~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~  294 (529)
T d1jdha_         239 PSQRLVQNCLWTLRNLSDAATK-------QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLT  294 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCTT-------CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhHHHhccccccc-------hhhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhc
Confidence            8999999999999999864221       112368999999999988 8899999999888775

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-24  Score=219.70  Aligned_cols=279  Identities=16%  Similarity=0.112  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      +-++.++..|...   ++.+.+..|+.+|..++. ++.++..+++.|++|.|+.+|++   +    +++++..|+++|..
T Consensus        59 ~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~---~----~~~v~~~a~~aL~~  127 (529)
T d1jdha_          59 QMVSAIVRTMQNT---NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGS---P----VDSVLFYAITTLHN  127 (529)
T ss_dssp             HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCC---C----CHHHHHHHHHHHHH
Confidence            4567777777665   377889999999999986 56789999999999999999953   3    68899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      ++..++..+..+.+.|+|+.|+.+|++++.+++..++.+|.+++..+++.+..+ ...|++++|+.++++......+..+
T Consensus       128 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~~  206 (529)
T d1jdha_         128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTT  206 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHH-HhcccchHHHHHHHhhhhHHHHHHH
Confidence            555566678888899999999999999999999999999999976777777777 5679999999999877567899999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS  361 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~  361 (444)
                      ++++.+++.+.+    ++..+++.|+++.|+.++.+++..++..++++|.+++.....  .. ...|+++.|++++.+.+
T Consensus       207 ~~~l~~ls~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~-~~~~~i~~Lv~ll~~~~  279 (529)
T d1jdha_         207 SRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QE-GMEGLLGTLVQLLGSDD  279 (529)
T ss_dssp             HHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CS-CCHHHHHHHHHHTTCSC
T ss_pred             HHHHhhhhcccc----ccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hh-hhhhcchhhhhhccccc
Confidence            999999998876    999999999999999999999999999999999999864332  22 44688999999998889


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSELLKLLN  423 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll~~l~  423 (444)
                      ..+++.|+++|++|+..    +.+....+.+.|+++.|+.++... ..+.+++.|..+|+.+.
T Consensus       280 ~~~~~~a~~~L~~l~~~----~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         280 INVVTCAAGILSNLTCN----NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             HHHHHHHHHHHHHHTTT----CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccc----hhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence            99999999999999984    466777777999999999977543 35788888998888775

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.8e-23  Score=210.26  Aligned_cols=282  Identities=13%  Similarity=0.115  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhc-cCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTK-ESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      .++.++..+.+.    +.+.+..|+..++++.. +.......+++.|++|.|+.+|..  +.    +..++..|+++|..
T Consensus        77 ~l~~~~~~~~s~----~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~--~~----~~~iq~~a~~~L~n  146 (503)
T d1wa5b_          77 ELPQMTQQLNSD----DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE--NQ----PEMLQLEAAWALTN  146 (503)
T ss_dssp             CHHHHHHHHSCS----SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST--TS----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC----CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC--CC----CHHHHHHHHHHHHH
Confidence            466677766554    88899999999998764 334456789999999999999952  12    57899999999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      +++.+++....+.+.|+++.++.+|.+++.++++.|+++|+||+..+++++..+ ...|++++|+.++.+. ++.+++.+
T Consensus       147 i~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l-~~~~~~~~L~~ll~~~-~~~~~~~~  224 (503)
T d1wa5b_         147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV-LQCNAMEPILGLFNSN-KPSLIRTA  224 (503)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHGGGSC-CHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHH-HhhcccccchhhcccC-CHHHHHHH
Confidence            556667777788899999999999999999999999999999987788899988 5679999999999988 78999999


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS  361 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~  361 (444)
                      +|+|.+++.+..   .........|+++.|+.++.+.+.+++..++++|.+|+.........+.+.|+++.++.++.+.+
T Consensus       225 ~~~l~nl~~~~~---~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  301 (503)
T d1wa5b_         225 TWTLSNLCRGKK---PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES  301 (503)
T ss_dssp             HHHHHHHHCCSS---SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHhcCCc---cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc
Confidence            999999998764   13344466789999999999999999999999999999766655444488999999999999889


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ..++..|+.+|.+++..    +......+.+.|+++.|..++++. ++.+++.+.+++..+..
T Consensus       302 ~~v~~~al~~l~nl~~~----~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         302 TLVQTPALRAVGNIVTG----NDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  359 (503)
T ss_dssp             HHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHHHH----HHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhh
Confidence            99999999999999984    355666677899999999999988 88999999998877753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.9e-22  Score=199.27  Aligned_cols=288  Identities=11%  Similarity=0.140  Sum_probs=234.0

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .++.++..|.+.    +.+.+..|+++|.+++.+++..+..+.+.|+++.|+.++......  .........+...+...
T Consensus       100 ~i~~l~~~L~~~----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~l~~~  173 (434)
T d1q1sc_         100 AIPAFISLLASP----HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS--TLACGYLRNLTWTLSNL  173 (434)
T ss_dssp             HHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG--GSCHHHHHHHHHHHHHH
T ss_pred             chhhhhhccccC----CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccc--cchHHHHHHHHHHHHHH
Confidence            455666666554    888999999999999999888899999999999999999543211  11234556667777733


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      +.............++++.|+.++++++++++..|+++|.+|+..+++....+ ...|+++.|+.+++++ +++++..++
T Consensus       174 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~Lv~ll~~~-~~~~~~~al  251 (434)
T d1q1sc_         174 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTPAL  251 (434)
T ss_dssp             TCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHHHH
T ss_pred             hhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHH-hhcccchhcccccccc-hhhhhhchh
Confidence            33333333333456789999999999999999999999999966666666666 5579999999999988 899999999


Q ss_pred             HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250          283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD  362 (444)
Q Consensus       283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  362 (444)
                      .+|.+++.+++   ..+..+++.|+++.|+.+|.+.+.++++.++++|.+|+.........+.+.|+++.++.++.+.+.
T Consensus       252 ~~l~~l~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~  328 (434)
T d1q1sc_         252 RAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF  328 (434)
T ss_dssp             HHHHHHTTSCH---HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCH
T ss_pred             hhhhhHHhhhh---HHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccCh
Confidence            99999998764   467788999999999999999999999999999999998766666655888999999999998899


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250          363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH  425 (444)
Q Consensus       363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~  425 (444)
                      .++..|+++|.+++..   ++.+....+++.|+++.|+.+++++ +++....+...+..+-+.
T Consensus       329 ~v~~~a~~~l~nl~~~---~~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         329 KTQKEAAWAITNYTSG---GTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc---CCHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            9999999999999986   3356667778999999999999988 888888888855544433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-22  Score=197.88  Aligned_cols=288  Identities=12%  Similarity=0.108  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      .|+.+++.|.++    +++.+..|+..|.++|.+++++|..+++.|+||.|+++|++   +    +++++..|+++|..+
T Consensus         3 ~ip~lv~~L~~~----~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~----~~~v~~~a~~aL~~L   71 (457)
T d1xm9a1           3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS---P----NQNVQQAAAGALRNL   71 (457)
T ss_dssp             CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS---S----CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC---C----CHHHHHHHHHHHHHH
Confidence            377899999886    89999999999999999999999999999999999999953   2    688999999999955


Q ss_pred             cCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcch--------------------------------
Q 038250          203 FPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDH--------------------------------  249 (444)
Q Consensus       203 l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~--------------------------------  249 (444)
                      ...+++++..+.+.|+++.|+.++.+ .+.+++..|+++|.+|+....                                
T Consensus        72 ~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  151 (457)
T d1xm9a1          72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS  151 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-------
T ss_pred             HcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhh
Confidence            55778899999999999999999865 478888888888888854221                                


Q ss_pred             -----------------------hhHHHhhcccccHHHHHHHhc------------------------------------
Q 038250          250 -----------------------RKVNVLLDIEGAIEPLFKLIK------------------------------------  270 (444)
Q Consensus       250 -----------------------~~~~~i~~~~g~i~~Lv~ll~------------------------------------  270 (444)
                                             +++..+....|+++.|+.+++                                    
T Consensus       152 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  231 (457)
T d1xm9a1         152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR  231 (457)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence                                   112222133467777776553                                    


Q ss_pred             --------------------------------------------------------------CCCChHHHHHHHHHHHHH
Q 038250          271 --------------------------------------------------------------EPICPTATKASLVVVYRT  288 (444)
Q Consensus       271 --------------------------------------------------------------~~~~~~~~~~a~~aL~~L  288 (444)
                                                                                    ...++..+..+.+++.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l  311 (457)
T d1xm9a1         232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL  311 (457)
T ss_dssp             HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence                                                                          111345566777777777


Q ss_pred             hcCCCCC--CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc------
Q 038250          289 ITSASAT--EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV------  360 (444)
Q Consensus       289 ~~~~~~~--~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~------  360 (444)
                      +......  ...+..+.+.|+++.|+++|.+++..+++.++.+|.+|+.+++++..+ .+ ++++.+++++...      
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i-~~-~~i~~li~~L~~~~~~~~~  389 (457)
T d1xm9a1         312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GN-QVFPEVTRLLTSHTGNTSN  389 (457)
T ss_dssp             TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HH-HTHHHHHHTTTSCCSCSTT
T ss_pred             hhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHH-HH-hhHHHHHHHHhccccCcCC
Confidence            7654300  012445567899999999999999999999999999999999888777 43 7899999988642      


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ++.++..|+.+|.+|+..    +++.+..+++.|+++.|+.++.+..++.+++.|+.+|..|..+.+
T Consensus       390 ~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         390 SEDILSSACYTVRNLMAS----QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTT----CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             cHHHHHHHHHHHHHHhcC----CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            345788999999999974    456777778999999999999987688999999999998865554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-20  Score=172.40  Aligned_cols=194  Identities=15%  Similarity=0.148  Sum_probs=168.6

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLF  266 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv  266 (444)
                      +.+.+..|+.+|. .+..+.+++..+...|+++.++. +|++++++++..|+++|++++..++..+..+ ...|+||+|+
T Consensus        30 ~~~~~~~Al~~L~-~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~-~~~~~i~~Lv  107 (264)
T d1xqra1          30 DQQEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHH
T ss_pred             CHHHHHHHHHHHH-HHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCchHHHH
Confidence            5678889999999 66678888888999999999886 7888899999999999999977778888888 5579999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhhHHHHhc
Q 038250          267 KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYGRGDAYN  345 (444)
Q Consensus       267 ~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~  345 (444)
                      .++.+..++.++..++++|.+++.+..   .++..+.+.|+++.|+++|.+++..++..++++|.+|+.. ++.+..+ .
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~  183 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL-C  183 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccch---hhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHH-H
Confidence            999866578999999999999998875   4788889999999999999999999999999999999864 5556666 8


Q ss_pred             CCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 038250          346 NSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL  391 (444)
Q Consensus       346 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  391 (444)
                      +.|+++.|++++.+.++.+++.|+++|++|+..+    +.....+.
T Consensus       184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~----~~~~~~~~  225 (264)
T d1xqra1         184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF----PQGVRECR  225 (264)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC----HHHHHHHH
T ss_pred             HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----HHHHHHHH
Confidence            8899999999999889999999999999999853    44555555

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-19  Score=166.27  Aligned_cols=192  Identities=11%  Similarity=0.102  Sum_probs=166.5

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHH-HHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAE-AFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      |.+.+..|+..|..++. +.+++..+.+.|++++|+. +|.+   +    +++++..|+.+|..++..++..+..+.+.|
T Consensus        30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s---~----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA---G----AAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC---S----SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCC---C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999995 4668889999999999987 4532   2    689999999999966666788888999999


Q ss_pred             cHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250          218 SMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE  296 (444)
Q Consensus       218 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  296 (444)
                      +++.|+.+|.+ .++.++..|+++|.+|+..++.++..+ ...|+++.|+.+++++ ++.++..++++|.+++...+   
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~---  176 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF-LRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHP---  176 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCG---
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHH-HHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccH---
Confidence            99999999975 478899999999999988888888888 5579999999999998 89999999999999987654   


Q ss_pred             chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh-hhHHHH
Q 038250          297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD-YGRGDA  343 (444)
Q Consensus       297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i  343 (444)
                      .++..+++.|+++.|+.+|.++++.+++.|+++|.+|+... +....+
T Consensus       177 ~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         177 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            48899999999999999999999999999999999999744 344444

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-18  Score=169.82  Aligned_cols=248  Identities=13%  Similarity=0.066  Sum_probs=194.7

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      +.||.||++|.+.       +++++..|+++|..++..++++|..+.+.|+||.|+++|+++++++++.|+++|.+|+..
T Consensus         2 ~~ip~lv~~L~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~   74 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             CCHHHHHHHHHSS-------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHhCCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            5799999999643       699999999999955567889999999999999999999999999999999999999767


Q ss_pred             chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-----------
Q 038250          248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-----------  316 (444)
Q Consensus       248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-----------  316 (444)
                      +++++..+ ...|+++.|+.++.+..++.++..|+++|.+++.+..    ....+... +++.++..+.           
T Consensus        75 ~~~~~~~i-~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~  148 (457)
T d1xm9a1          75 STTNKLET-RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE----LKEELIAD-ALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             CHHHHHHH-HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS----THHHHHHH-HHHHHHHHTTHHHHTCC----
T ss_pred             CHHHHHHH-HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh----hHHHHHhc-ccHHHHHHHHhhhhhhhcchh
Confidence            88899988 5579999999999877678999999999999999876    66666655 4455554442           


Q ss_pred             -----ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-------------------------------
Q 038250          317 -----DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-------------------------------  360 (444)
Q Consensus       317 -----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-------------------------------  360 (444)
                           ..+..+++.++.+|..++.+++++.......|+++.++.++.+.                               
T Consensus       149 ~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  228 (457)
T d1xm9a1         149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT  228 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred             hhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence                 23567889999999999999988888866677788877765321                               


Q ss_pred             --------------------------------------------------------------------ChhHHHHHHHHH
Q 038250          361 --------------------------------------------------------------------SDLATEFAVSIL  372 (444)
Q Consensus       361 --------------------------------------------------------------------~~~~~~~a~~~L  372 (444)
                                                                                          ++..++.+.+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l  308 (457)
T d1xm9a1         229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL  308 (457)
T ss_dssp             HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHH
Confidence                                                                                112334555666


Q ss_pred             HHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250          373 WKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL  429 (444)
Q Consensus       373 ~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~  429 (444)
                      .+++...........+..+ +.|+++.|+.++.+. ++.+++.+..++..++.+.++.
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~~~~  365 (457)
T d1xm9a1         309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred             HHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhChhHH
Confidence            6665543321222233333 789999999999988 8999999999999998765543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=2.4e-20  Score=138.62  Aligned_cols=73  Identities=47%  Similarity=0.918  Sum_probs=68.3

Q ss_pred             CCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      ++|++|.||||+++|+|||+++|||+||+.||++|+ ..+...||.|+.++...++.||..|+++|++|..+++
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~-~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHH-HHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence            588999999999999999999999999999999999 5566789999999999999999999999999998875

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.3e-20  Score=139.38  Aligned_cols=74  Identities=34%  Similarity=0.536  Sum_probs=68.6

Q ss_pred             CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250           31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR  105 (444)
Q Consensus        31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~  105 (444)
                      .++|++|.||||+++|+|||+++|||+||+.||.+|+ ..+...||.|+.++...++.||..|+++|++|..+++
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l-~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL-QRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH-HHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHH-hcCCccCCCccccccccccccHHHHHHHHHHHHHHCC
Confidence            4678999999999999999999999999999999999 5667789999999998899999999999999998775

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=134.04  Aligned_cols=82  Identities=29%  Similarity=0.407  Sum_probs=72.3

Q ss_pred             CCCCCCcCCCCCCccccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 038250           23 VESGGEMELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWC  101 (444)
Q Consensus        23 ~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~  101 (444)
                      .+...+....+|++|.||||+++|.|||+++|| |+||+.||.+|+  ..+..||.|++++...++.||..|++.|+.|.
T Consensus         9 ~~~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l--~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_           9 QQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL--LSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             CCSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT--TTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             hhhhHhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHH--HhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            344556677899999999999999999999765 589999999999  45668999999999999999999999999999


Q ss_pred             Hhccc
Q 038250          102 VENRS  106 (444)
Q Consensus       102 ~~~~~  106 (444)
                      .++..
T Consensus        87 ~~~~~   91 (98)
T d1wgma_          87 AERKQ   91 (98)
T ss_dssp             HHSTT
T ss_pred             HHHHH
Confidence            88753

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=9.3e-16  Score=114.28  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCC-ccHHHHHHH
Q 038250           32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI-PNHTIRRMI   97 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~-~n~~l~~~i   97 (444)
                      ++.+.+.||||.+.|.+|++++|||+||+.||++|+ ..+...||.|+.++...++. |...+.+.+
T Consensus        19 d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCL-KVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             hhccCcCCccCCcchhcceecCCCChhhHHHHHHHH-hhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            344557999999999999999999999999999999 45666899999998866544 555665554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-15  Score=119.18  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=59.6

Q ss_pred             CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcC-CCCCCCCCcccCCCCCCccHHHHHHHHHHHH
Q 038250           33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDG-NITCPVTNRVLTSFEPIPNHTIRRMIQDWCV  102 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~-~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~  102 (444)
                      +.+.+.||||.++|.+|++++|||+||+.||.+|+...+ ...||.|+.++...++.+|..+.++++.+..
T Consensus        18 l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999994332 3689999999988888899888888777654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.1e-15  Score=113.79  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250           32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN  104 (444)
Q Consensus        32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~  104 (444)
                      .+++.+.||||.++|.+||++ +|||+||+.||.+|+ .   ..||.|+.++...++.+|..+..+++.|...+
T Consensus        18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~   87 (97)
T d1jm7b_          18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-G---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (97)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-T---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHH-h---ccccccCCcCchhhCcccHHHHHHHHHHHHHH
Confidence            456778999999999999986 899999999999998 2   24999999998889999999999998886543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=8.7e-15  Score=100.28  Aligned_cols=51  Identities=22%  Similarity=0.381  Sum_probs=44.7

Q ss_pred             cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250           37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP   89 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~   89 (444)
                      +.||||+++|++||.+ .|||+||+.||.+|+.  .+..||.|++++...++.+
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~--~~~~CP~c~~~l~~~dLip   52 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK--DTGNDPITNEPLSIEEIVE   52 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH--HHSBCTTTCCBCCGGGCEE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHh--hccCCCccCCcCCHHhcee
Confidence            5799999999999987 6999999999999994  3457999999998777654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-12  Score=95.74  Aligned_cols=49  Identities=20%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250           37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE   86 (444)
Q Consensus        37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~   86 (444)
                      ..||||.+.+.+|++++|||+||+.||.+|+ ..+...||.||..+...+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl-~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQ-ESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHH-HTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHH-HHCcCcCCCCCcCccCCc
Confidence            5799999999999999999999999999999 456678999999987653

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.4e-12  Score=87.95  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CccccccccccCcC-c----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250           35 NHFRCPISLDLMKD-P----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP   87 (444)
Q Consensus        35 ~~~~Cpic~~~~~~-P----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l   87 (444)
                      ++..||||++.+.. |    ++++|||+||..||.+|+ .++...||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~-~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHH-HTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHh-CcCcCCCCCCCcCcccccc
Confidence            46799999986532 2    456899999999999999 5666789999999876554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.7e-12  Score=87.18  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250           35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE   86 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~   86 (444)
                      +.+.|+||++.+.+|++++|||+||+.||++|     ...||.|++.++...
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC-----CCcCcCCCCcccCCC
Confidence            34799999999999999999999999998653     557999999887553

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.02  E-value=3.7e-11  Score=85.47  Aligned_cols=44  Identities=30%  Similarity=0.511  Sum_probs=38.4

Q ss_pred             ccccccccCcCcee-cCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           38 RCPISLDLMKDPVT-LSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        38 ~Cpic~~~~~~Pv~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .||||++.+.+|+. ++|||+||..||.+|+.  .+.+||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHH--hCCcCCCCCcchH
Confidence            69999999988865 69999999999999993  4568999998774

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.8e-10  Score=76.99  Aligned_cols=46  Identities=17%  Similarity=0.327  Sum_probs=38.1

Q ss_pred             ccccccccCcCc----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           38 RCPISLDLMKDP----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        38 ~Cpic~~~~~~P----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      -||||.+.|.+.    +.++|||+||+.|+.+|+ ..+...||.||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~-~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHT-TTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHH-hhcCCCCCccCCcCCC
Confidence            599999988643    445899999999999999 4556789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.92  E-value=1.8e-10  Score=77.76  Aligned_cols=48  Identities=21%  Similarity=0.530  Sum_probs=39.7

Q ss_pred             CCCccccccccccCcCc---eec-CCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250           33 TPNHFRCPISLDLMKDP---VTL-STGITYDRENIEKWIHEDGNITCPVTNRVL   82 (444)
Q Consensus        33 ~~~~~~Cpic~~~~~~P---v~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~   82 (444)
                      ++++..|+||++.|.+.   +.+ .|||.||..||.+|+  +.+.+||.||..+
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl--~~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--TTCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHH--HhCCcCCCCCCEe
Confidence            45667899999999753   344 699999999999999  4567899999865

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=1.3e-06  Score=78.55  Aligned_cols=233  Identities=10%  Similarity=-0.015  Sum_probs=142.7

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ...|++.|.+.    ++.++..|+..|..+...           .+++.|+++|+   +.    ++.++..|+.+|. .+
T Consensus        21 ~~~L~~~L~d~----~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~---d~----~~~vr~~a~~aL~-~l   77 (276)
T d1oyza_          21 DDELFRLLDDH----NSLKRISSARVLQLRGGQ-----------DAVRLAIEFCS---DK----NYIRRDIGAFILG-QI   77 (276)
T ss_dssp             HHHHHHHTTCS----SHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHT---CS----SHHHHHHHHHHHH-HS
T ss_pred             HHHHHHHhcCC----CHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHc---CC----CHHHHHHHHHHHH-Hh
Confidence            34567777665    899999999999887421           36899999994   22    6899999999998 44


Q ss_pred             CCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250          204 PLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL  282 (444)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~  282 (444)
                      ........     ..++.+.. ++++.++.++..|+.+|..+........      ...++.+...+.+. ++.++..++
T Consensus        78 ~~~~~~~~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~------~~~~~~l~~~~~d~-~~~vr~~a~  145 (276)
T d1oyza_          78 KICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS------PKIVEQSQITAFDK-STNVRRATA  145 (276)
T ss_dssp             CCCTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             cccccccc-----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh------HHHHHHHHHHhcCc-chHHHHHHH
Confidence            43322221     12344444 4567789999999999999954332211      24567777777776 677777777


Q ss_pred             HHHHHHhcCCC----------CCCchhHHH------Hh---cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250          283 VVVYRTITSAS----------ATEKPIQKF------VD---MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA  343 (444)
Q Consensus       283 ~aL~~L~~~~~----------~~~~~~~~i------~~---~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  343 (444)
                      .++..+.....          ++...+...      ..   ...++.++..+.+.+..++..++.++..+          
T Consensus       146 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----------  215 (276)
T d1oyza_         146 FAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----------  215 (276)
T ss_dssp             HHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT----------
T ss_pred             HHHhhcchHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchh----------
Confidence            66654422110          000000000      00   11222333333344444444444444332          


Q ss_pred             hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250          344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELL  419 (444)
Q Consensus       344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll  419 (444)
                       ....+++.|++.+.+  +.++..++.+|..+..               .++++.|..+|....+..++..|...|
T Consensus       216 -~~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---------------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         216 -KDKRVLSVLCDELKK--NTVYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             -TCGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             -hhhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence             334577888887753  4567788888877754               468899999888865778888876654

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.1e-08  Score=80.44  Aligned_cols=50  Identities=10%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             CccccccccccCcCc------------------eecCCcchhcHHHHHHHHHhc---CCCCCCCCCcccCC
Q 038250           35 NHFRCPISLDLMKDP------------------VTLSTGITYDRENIEKWIHED---GNITCPVTNRVLTS   84 (444)
Q Consensus        35 ~~~~Cpic~~~~~~P------------------v~~~cg~~~c~~ci~~~~~~~---~~~~CP~c~~~~~~   84 (444)
                      .+..|+||++.|.++                  ..++|||.||..||.+|+...   ++.+||.||..+..
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            345799999988654                  346899999999999999432   34689999987754

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.62  E-value=1.4e-08  Score=69.78  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             CccccccccccCcCceecCC-----cchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250           35 NHFRCPISLDLMKDPVTLST-----GITYDRENIEKWIHEDGNITCPVTNRVLTS   84 (444)
Q Consensus        35 ~~~~Cpic~~~~~~Pv~~~c-----g~~~c~~ci~~~~~~~~~~~CP~c~~~~~~   84 (444)
                      +...|+||++.+.++...+|     +|.|++.|+.+|+..+++.+||.|+++++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            44689999999998877655     499999999999966678899999988753

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.4e-07  Score=89.21  Aligned_cols=268  Identities=13%  Similarity=0.096  Sum_probs=172.9

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      ..++..+...+...++.++..|+..+..+++.-.   ........++.+..++.   +.    +..++..|+.++..+..
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~---d~----~~~vr~~a~~~l~~i~~  232 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLAS---DE----QDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---HHHHHHTHHHHHHHHHT---CS----CHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHhc---CC----chhhHHHHHHHHHHhhc
Confidence            3344443333333478889999999999886532   12233455666777663   22    57888888888874432


Q ss_pred             C-ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHH
Q 038250          205 L-AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLV  283 (444)
Q Consensus       205 ~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  283 (444)
                      . +++...    .-.++.+..++.+.+..+|..++.+|.+++.....  +..  ....++.+..++++. +++++..|+.
T Consensus       233 ~~~~~~~~----~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~ll~d~-~~~vr~~a~~  303 (588)
T d1b3ua_         233 LLPQEDLE----ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT--KTDLVPAFQNLMKDC-EAEVRAAASH  303 (588)
T ss_dssp             HSCHHHHH----HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH--HHTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred             cCCHHHHH----HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhh--hhhhhHHHHHHHhcc-chHHHHHHHH
Confidence            2 222222    23578888888888999999999999999532211  122  246789999999988 7999999999


Q ss_pred             HHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChh
Q 038250          284 VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDL  363 (444)
Q Consensus       284 aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~  363 (444)
                      +|..++..-.  ........-...++.+..++.+.+..++..++.++..++..- +.... . ...+|.+...+...++.
T Consensus       304 ~l~~~~~~l~--~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~~-~-~~l~p~l~~~l~d~~~~  378 (588)
T d1b3ua_         304 KVKEFCENLS--ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNT-I-EHLLPLFLAQLKDECPE  378 (588)
T ss_dssp             HHHHHHHTSC--TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHH-H-HHTHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHHh--hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhHH-H-HHHHHHHHHHHHhhhhh
Confidence            9999886532  112333333457888888888888888888888877765311 12222 1 23577888877767777


Q ss_pred             HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      ++..++..+..+....+   ..    .+....++.+..++.+. +.++|+.+...+..+..
T Consensus       379 v~~~~~~~l~~~~~~~~---~~----~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         379 VRLNIISNLDCVNEVIG---IR----QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             HHHHHHTTCHHHHHHSC---HH----HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhcc---hh----hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            77777777666654321   11    11234566666666666 66777777666665544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.6e-07  Score=89.14  Aligned_cols=264  Identities=8%  Similarity=0.030  Sum_probs=172.4

Q ss_pred             HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250          126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL  205 (444)
Q Consensus       126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~  205 (444)
                      .++..+......++..++..|+.+|..++..-+..   -.+.-.+|.+..+.+   +.    ....+..|+..+......
T Consensus        87 ~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~---~~----~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTT
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc---cc----chHHHHHHHHHHHHHHHH
Confidence            34443333333347778999999999988653321   233334554555552   11    345666777666633332


Q ss_pred             C-hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250          206 A-GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV  284 (444)
Q Consensus       206 ~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  284 (444)
                      . +..+.     ..++.+..++.+.++.+|..|+.++..++....  .+.+ . ...++.|..+++++ ++.++..|+.+
T Consensus       157 ~~~~~~~-----~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~--~~~~-~-~~l~~~l~~l~~d~-~~~vr~~a~~~  226 (588)
T d1b3ua_         157 VSSAVKA-----ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--LDNV-K-SEIIPMFSNLASDE-QDSVRLLAVEA  226 (588)
T ss_dssp             SCHHHHH-----HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--HHHH-H-HTHHHHHHHHHTCS-CHHHHTTHHHH
T ss_pred             hhHHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--HHHH-H-HHHHHHHHHHhcCC-chhhHHHHHHH
Confidence            2 22232     247888888888999999999999999964322  1222 2 35678888888877 78999999999


Q ss_pred             HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250          285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA  364 (444)
Q Consensus       285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  364 (444)
                      |..++..-.    .  .....-.++.+..++.+.+..++..++.+|..++..-...  . .....++.+..++...+..+
T Consensus       227 l~~i~~~~~----~--~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~--~-~~~~l~~~l~~ll~d~~~~v  297 (588)
T d1b3ua_         227 CVNIAQLLP----Q--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--I-TKTDLVPAFQNLMKDCEAEV  297 (588)
T ss_dssp             HHHHHHHSC----H--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--H-HHHTHHHHHHHHHTCSSHHH
T ss_pred             HHHhhccCC----H--HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhh--h-hhhhhhHHHHHHHhccchHH
Confidence            999986543    1  1222336888888888888899999999999987522111  1 12356888888888888899


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250          365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL  422 (444)
Q Consensus       365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l  422 (444)
                      +..|+..|..++...+.   .......-..+++.+..++... +..+|..++..+..+
T Consensus       298 r~~a~~~l~~~~~~l~~---~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         298 RAAASHKVKEFCENLSA---DCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL  351 (588)
T ss_dssp             HHHHHHHHHHHHHTSCT---TTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred             HHHHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhh
Confidence            99999999988765332   1112222345667777777666 777777766544433

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.1e-08  Score=72.53  Aligned_cols=44  Identities=20%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             ccccccccCcC------------------ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           38 RCPISLDLMKD------------------PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        38 ~Cpic~~~~~~------------------Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .|+||.+.+.+                  ++.++|||.|+..||.+|+  +.+.+||.||+++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH--TTCSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHH--HHCCcCCCCCCccc
Confidence            47777766654                  2345899999999999999  55678999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.2e-05  Score=70.02  Aligned_cols=208  Identities=10%  Similarity=0.046  Sum_probs=132.8

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS  247 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~  247 (444)
                      ...+.|+++|+   ++    ++.++..|+.+|.. ..          ...+++.|+.+|++.++.++..|+.+|..+ ..
T Consensus        19 ~~~~~L~~~L~---d~----~~~vR~~A~~~L~~-~~----------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l-~~   79 (276)
T d1oyza_          19 LNDDELFRLLD---DH----NSLKRISSARVLQL-RG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI-KI   79 (276)
T ss_dssp             SCHHHHHHHTT---CS----SHHHHHHHHHHHHH-HC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHS-CC
T ss_pred             CCHHHHHHHhc---CC----CHHHHHHHHHHHHh-hC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc
Confidence            34667888884   23    79999999999983 22          235689999999999999999999999998 43


Q ss_pred             chhhHHHhhcccccHHHHHHH-hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250          248 DHRKVNVLLDIEGAIEPLFKL-IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA  326 (444)
Q Consensus       248 ~~~~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a  326 (444)
                      .......      .++.|... ++++ ++.++..++.+|.+++....    ..    ....++.+...+.+.+..++..+
T Consensus        80 ~~~~~~~------~~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~----~~----~~~~~~~l~~~~~d~~~~vr~~a  144 (276)
T d1oyza_          80 CKKCEDN------VFNILNNMALNDK-SACVRATAIESTAQRCKKNP----IY----SPKIVEQSQITAFDKSTNVRRAT  144 (276)
T ss_dssp             CTTTHHH------HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCG----GG----HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             ccccccc------hHHHHHHHHhcCC-ChhHHHHHHHHHHHHccccc----hh----hHHHHHHHHHHhcCcchHHHHHH
Confidence            3322222      23445544 4455 89999999999999987653    11    12357778888877788888777


Q ss_pred             HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcccccc-----------chHHHHHH------
Q 038250          327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEER-----------EEKTAFAE------  389 (444)
Q Consensus       327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-----------~~~~~~~~------  389 (444)
                      +.++..+.           +...++.+..++...+...+..+..++..+....+.           .+......      
T Consensus       145 ~~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  213 (276)
T d1oyza_         145 AFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLS  213 (276)
T ss_dssp             HHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHhhcc-----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccc
Confidence            77766542           234556666655555555555555554444322110           00111111      


Q ss_pred             -HHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          390 -ALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       390 -~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                       +....+++.|+..+++.   .+|..|+.+|..+.
T Consensus       214 ~~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~ig  245 (276)
T d1oyza_         214 YRKDKRVLSVLCDELKKN---TVYDDIIEAAGELG  245 (276)
T ss_dssp             HTTCGGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred             hhhhhhhHHHHHHHhCCh---HHHHHHHHHHHHcC
Confidence             11255788888888744   46777777777664

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.1e-06  Score=90.43  Aligned_cols=272  Identities=10%  Similarity=0.047  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250          122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL  201 (444)
Q Consensus       122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~  201 (444)
                      ..+..+++++.+.    |++.+..|+..|......+...-..-....+++.|+++|.   |.    +++||..|+.+|..
T Consensus         3 ~~~~~ll~k~~~~----D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~---D~----~~~Vq~~A~k~l~~   71 (1207)
T d1u6gc_           3 YHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DK----NGEVQNLAVKCLGP   71 (1207)
T ss_dssp             HHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CS----SHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcCCC----CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHH
Confidence            4577788888776    8999999998888766443322222122347888888883   33    79999999999985


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh------hHHHhhcccccHHHHHHHhcCCCCh
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR------KVNVLLDIEGAIEPLFKLIKEPICP  275 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~------~~~~i~~~~g~i~~Lv~ll~~~~~~  275 (444)
                      +...-.+...    ...++.|+..+.+++...+..++.+|..+...-+.      ....+  ....++.|...+....++
T Consensus        72 l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~  145 (1207)
T d1u6gc_          72 LVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDV  145 (1207)
T ss_dssp             HHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCH
T ss_pred             HHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHHHHhhcCCCCH
Confidence            4443332211    24567777777778888888888888877432221      11111  123455666666666577


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHH
Q 038250          276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK  355 (444)
Q Consensus       276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~  355 (444)
                      .++..++.+|..+.....  . .-... ....++.|+..|.+.+..+++.|+.+|..|+..-..  ..  -...++.+++
T Consensus       146 ~v~~~al~~l~~l~~~~g--~-~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~--~~~~~~~ll~  217 (1207)
T d1u6gc_         146 SVQLEALDIMADMLSRQG--G-LLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV--FVDLIEHLLS  217 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHTC--S-SCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh--H-hhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HH--HHHHHHHHHH
Confidence            889999999998876543  0 11111 123677788888888889999999999999863321  11  1245777777


Q ss_pred             HHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          356 KILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       356 ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .+... +...+..++.+|..++...+..    . .-.-..+++.++..+... ++.+|+.+..++..+..
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~----~-~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         218 ELSKNDSMSTTRTYIQCIAAISRQAGHR----I-GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHTCSSCSCTTHHHHHHHHHHHSSGG----G-TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHcchh----h-HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            66543 4455666777888887754321    0 001256788999999888 88899999887766654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.4e-05  Score=71.55  Aligned_cols=285  Identities=13%  Similarity=0.040  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      -++.++..+.+..  .+...+..++..+..++.........-.-...++.++..+.+.     +.+.+++..|+.++...
T Consensus       128 ~~~~l~~~l~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~-----~~~~~v~~~a~~~l~~~  200 (458)
T d1ibrb_         128 LIPQLVANVTNPN--STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE-----EPSNNVKLAATNALLNS  200 (458)
T ss_dssp             HHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT-----CCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhc--chHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc-----ccCHHHHHHHHHHHHHH
Confidence            4555666665432  2445566777888877754433222222234566666666321     12577899999988855


Q ss_pred             cCCChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250          203 FPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKA  280 (444)
Q Consensus       203 l~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~  280 (444)
                      +........ .......++.+..++.+.+++++..++.+|..++...... ...+ . ....+.+...+.+. +..++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~-~~~~~~~  277 (458)
T d1ibrb_         201 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVALQ  277 (458)
T ss_dssp             TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCS-SHHHHHH
T ss_pred             HHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccc-cHHHHHH
Confidence            443333221 1112345667777778889999999999999996544432 2223 1 22334444555555 6788888


Q ss_pred             HHHHHHHHhcCCCC-----------------CCchhHHHHhcCcHHHHHHHhhc-------cccchHHHHHHHHHHhcCC
Q 038250          281 SLVVVYRTITSASA-----------------TEKPIQKFVDMGLVSLLLEMLVD-------AQRSLCEKALSVLDGLCSS  336 (444)
Q Consensus       281 a~~aL~~L~~~~~~-----------------~~~~~~~i~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~  336 (444)
                      ++..+..++.....                 .........-...++.+.+.+.+       .+..++..+..++..++..
T Consensus       278 a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~  357 (458)
T d1ibrb_         278 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  357 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHh
Confidence            88888887643210                 00001111112344555555542       1334777888888887742


Q ss_pred             hhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250          337 DYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS  416 (444)
Q Consensus       337 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~  416 (444)
                      ....  + . ...++.+...+.+.+...++.|+.+|..++....   .+.... .-..+++.|+..+++. ++.+|..|.
T Consensus       358 ~~~~--~-~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~---~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~  428 (458)
T d1ibrb_         358 CEDD--I-V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAA  428 (458)
T ss_dssp             TTTT--H-H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred             ccHh--h-h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC---HhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            1111  1 0 1234455555555677889999999999986321   111111 1256889999999887 999999999


Q ss_pred             HHHHHHHhhc
Q 038250          417 ELLKLLNPHR  426 (444)
Q Consensus       417 ~ll~~l~~~~  426 (444)
                      +.+..+.+..
T Consensus       429 ~~l~~i~~~~  438 (458)
T d1ibrb_         429 WTVGRICELL  438 (458)
T ss_dssp             HHHHHHHHHG
T ss_pred             HHHHHHHHHh
Confidence            9888777654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=0.00022  Score=68.00  Aligned_cols=269  Identities=10%  Similarity=0.066  Sum_probs=169.1

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc--cC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG--SA  216 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~--~~  216 (444)
                      +.-....+...+..++..+..+...   .+..+.+..++.+...+.   +...+.-++..|. .+-..++.|..+.  +.
T Consensus       135 d~~~~~~s~~i~~ll~~~~~~~~~~---~e~l~~~~~~l~~l~~~~---~~~~~~i~v~~lq-~llr~~~~R~~fw~~~~  207 (477)
T d1ho8a_         135 FQTVLISGFNVVSLLVQNGLHNVKL---VEKLLKNNNLINILQNIE---QMDTCYVCIRLLQ-ELAVIPEYRDVIWLHEK  207 (477)
T ss_dssp             HHHHHHHHHHHHHHHTSTTTCCHHH---HHHHHHCHHHHHHHHCTT---CHHHHHHHHHHHH-HHHTSHHHHHHHHTTHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccch---HHHHHHhhHHHHHhhccc---ccchHHHHHHHHH-HHhcCccHHHHHHHccc
Confidence            4434455555556666544333221   222333334443332222   4667777777777 4445678888764  34


Q ss_pred             CcHHHHHHHHhcC-----------------CHHHHHHHHHHHHHHHhcchhhHHHhhccc--ccHHHHHHHhcCCCChHH
Q 038250          217 SSMRCMVWFLKSG-----------------DLSRRRNAVLVLREIVSSDHRKVNVLLDIE--GAIEPLFKLIKEPICPTA  277 (444)
Q Consensus       217 g~i~~Lv~lL~~~-----------------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~--g~i~~Lv~ll~~~~~~~~  277 (444)
                      ..++.|+..|+..                 +..++-+++.+++-| +.+++....+ ...  +.|+.|+++++....+.+
T Consensus       208 ~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~l-~~~~~~~i~~l~~i~~~s~KEKv  285 (477)
T d1ho8a_         208 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPVFANEL-VQKYLSDFLDLLKLVKITIKEKV  285 (477)
T ss_dssp             HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHHHHHHH-HTTSHHHHHHHHHHHHHCCSHHH
T ss_pred             chHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH-HcCHHHHHHH-HHhhhHHHHHHHHHHHhhhHHHH
Confidence            5677777777541                 246678899999999 6777777777 333  459999999987767899


Q ss_pred             HHHHHHHHHHHhcCCCCCCch----hHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHH-------HHhcCChhhHHHH
Q 038250          278 TKASLVVVYRTITSASATEKP----IQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVL-------DGLCSSDYGRGDA  343 (444)
Q Consensus       278 ~~~a~~aL~~L~~~~~~~~~~----~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L-------~~L~~~~~~~~~i  343 (444)
                      .+-++.+|+|+.....  ..+    ...++..++++ ++..|...   |+++.+..-.+-       ..++..++...++
T Consensus       286 vRv~l~~l~Nll~~~~--~~~~~~~~~~~v~~~~l~-~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev  362 (477)
T d1ho8a_         286 SRLCISIILQCCSTRV--KQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL  362 (477)
T ss_dssp             HHHHHHHHHHTTSSSS--TTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhh--hhhhhHHHHHHHHcchhH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999987643  112    33455566654 45666532   565554333222       2233333322222


Q ss_pred             ----------------h-------cC--CCChHHHHHHHhh----------cChhHHHHHHHHHHHHccccccchHHHHH
Q 038250          344 ----------------Y-------NN--SLIFPVIVKKILR----------VSDLATEFAVSILWKLCKNEEREEKTAFA  388 (444)
Q Consensus       344 ----------------~-------~~--~g~i~~Lv~ll~~----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  388 (444)
                                      .       .+  ...+..|+++|.+          .++.+...|+.=++.++++.|.|    +.
T Consensus       363 ~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g----r~  438 (477)
T d1ho8a_         363 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES----ID  438 (477)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH----HH
T ss_pred             hcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch----hH
Confidence                            0       11  1268889998863          24556678888899999998752    33


Q ss_pred             HHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          389 EALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       389 ~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .+-+-|+=..++++|... ++.+|..|...++.+-.
T Consensus       439 il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         439 VLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            334679988999999888 99999999997766643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=0.0003  Score=72.33  Aligned_cols=274  Identities=12%  Similarity=0.023  Sum_probs=162.1

Q ss_pred             hHHHHHHHHH-HHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250          121 SVEVFEINCN-ITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL  199 (444)
Q Consensus       121 ~~~i~~ll~~-L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L  199 (444)
                      .+++..++.. +.++    |...+.+|-..|..+..+++.        +.+..|.+++.+.  +   .+..++..|+-.|
T Consensus         3 ~~~~~~~L~~~~~s~----d~~~r~~Ae~~L~~~~~~~~~--------~~~~~l~~il~~~--~---~~~~~r~~A~i~l   65 (861)
T d2bpta1           3 TAEFAQLLENSILSP----DQNIRLTSETQLKKLSNDNFL--------QFAGLSSQVLIDE--N---TKLEGRILAALTL   65 (861)
T ss_dssp             HHHHHHHHHHHHHCS----SHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHTCT--T---SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHcC--C---CCHHHHHHHHHHH
Confidence            3455555543 3444    888999999999988765432        3677788888432  1   2467777777777


Q ss_pred             HhhcCCChhhhh---------hcc---cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          200 TLLFPLAGEGLT---------YLG---SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       200 ~~~l~~~~~~~~---------~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      .+.+........         .+-   ....-..++..|.+.+..++..++.++..++..+-.. .   .-...++.|++
T Consensus        66 kn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~-~---~wpeli~~L~~  141 (861)
T d2bpta1          66 KNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH-G---AWPELMKIMVD  141 (861)
T ss_dssp             HTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-T---CCHHHHHHHHH
T ss_pred             HHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc-C---chHHHHHHHHH
Confidence            744443221110         011   1122456677788888999999999999995332110 0   11356888999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhh--ccccchHHHHHHHHHHhcCChhhHHH-
Q 038250          268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLV--DAQRSLCEKALSVLDGLCSSDYGRGD-  342 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~-  342 (444)
                      .+.++.+...+..|+.+|..++..-.  . ....+..  ...+..++..+.  +.+..++..++.+|.++...-..... 
T Consensus       142 ~~~s~~~~~~~~~al~~l~~i~e~~~--~-~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  218 (861)
T d2bpta1         142 NTGAEQPENVKRASLLALGYMCESAD--P-QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER  218 (861)
T ss_dssp             HTSTTSCHHHHHHHHHHHHHHHHTSS--T-TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHh
Confidence            99877456678889999999986543  0 1111111  123444444443  33567889999999988753221110 


Q ss_pred             HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH-HHhcCCChHHHHHHHHHHHH
Q 038250          343 AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL-LLQVGCADKTKEHVSELLKL  421 (444)
Q Consensus       343 i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~  421 (444)
                      .......++.+...+...++.++..+..+|..++...+.    .....+. ..+..++. ...+. ++.++..+..++..
T Consensus       219 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~----~~~~~l~-~~l~~l~~~~~~~~-~~~v~~~~~~~l~~  292 (861)
T d2bpta1         219 EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT----FMKPYME-QALYALTIATMKSP-NDKVASMTVEFWST  292 (861)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG----GCHHHHH-HTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHH
Confidence            001112455666666667888899999999998875332    1111111 22333333 33344 77888887776655


Q ss_pred             HHh
Q 038250          422 LNP  424 (444)
Q Consensus       422 l~~  424 (444)
                      +..
T Consensus       293 l~~  295 (861)
T d2bpta1         293 ICE  295 (861)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00018  Score=75.54  Aligned_cols=280  Identities=9%  Similarity=-0.020  Sum_probs=153.8

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ++.++..+...+.+.+...+..|+.+|..++....+.-.... ...++.|+..|.   +.    ++.++..|+++|....
T Consensus       393 l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~---d~----~~~Vr~~a~~~l~~~~  464 (888)
T d1qbkb_         393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLS---DK----KALVRSITCWTLSRYA  464 (888)
T ss_dssp             HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTT---SS----CHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhcc---CC----CHHHHHHHHHHHHHHH
Confidence            456667776666666888888999999988754322111111 134566666663   22    6889999999987322


Q ss_pred             CCC-hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250          204 PLA-GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKAS  281 (444)
Q Consensus       204 ~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a  281 (444)
                      ... +...... -...++.++..+.+.++.+++.|+++|.+++.... .....+   ..+++.|+..+... +......+
T Consensus       465 ~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~---~~il~~l~~~l~~~-~~~~~~~~  539 (888)
T d1qbkb_         465 HWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKY-QHKNLLIL  539 (888)
T ss_dssp             HHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH---HHHHHHHHHHTTTC-CHHHHHHH
T ss_pred             HHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHhhh-hHHHHHHH
Confidence            110 1111111 14678889999988999999999999999963222 222222   35677888888776 56666666


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc--cccchHHHHHHHHHHhcCC-hhhHHHHhcCCCChHHHHHHHh
Q 038250          282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSS-DYGRGDAYNNSLIFPVIVKKIL  358 (444)
Q Consensus       282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~ll~  358 (444)
                      ..++..++..-.. ..+...+.+ ..++.+++....  .+.......+..|..++.. .+.-....  ....+.+++++.
T Consensus       540 ~~al~~l~~~~~~-~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~--~~~~~~~~~~l~  615 (888)
T d1qbkb_         540 YDAIGTLADSVGH-HLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC--EPVYQRCVNLVQ  615 (888)
T ss_dssp             HHHHHHHHHHHGG-GGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhc-cccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH--HHHHHHHHHHHH
Confidence            6677666533110 001222222 245555555542  2233334445555544320 00000000  001112222221


Q ss_pred             h-----------------cChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250          359 R-----------------VSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       359 ~-----------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                      .                 .+......+..++..+....+    ......+ ....++.++..++.. ++.+|+.|..++.
T Consensus       616 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~----~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llg  690 (888)
T d1qbkb_         616 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG----GNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLG  690 (888)
T ss_dssp             HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHT----TTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhh----hhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence            1                 022334455556666554221    1222222 456777888888777 8999999999887


Q ss_pred             HHHhh
Q 038250          421 LLNPH  425 (444)
Q Consensus       421 ~l~~~  425 (444)
                      -+..+
T Consensus       691 dl~~~  695 (888)
T d1qbkb_         691 DLTKA  695 (888)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.9e-06  Score=62.93  Aligned_cols=44  Identities=14%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             cccccccccCc--C-ceecCCcchhcHHHHHHHHHhc---C---CCCCCCCCc
Q 038250           37 FRCPISLDLMK--D-PVTLSTGITYDRENIEKWIHED---G---NITCPVTNR   80 (444)
Q Consensus        37 ~~Cpic~~~~~--~-Pv~~~cg~~~c~~ci~~~~~~~---~---~~~CP~c~~   80 (444)
                      -.||||.+.+.  + +...+|||.||+.|+..|+..+   +   ...||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            47999999875  3 4455899999999999998532   2   236998653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00023  Score=74.72  Aligned_cols=279  Identities=9%  Similarity=-0.001  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250          124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF  203 (444)
Q Consensus       124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l  203 (444)
                      ++.++..|...++..++.++..|++.|.+++.........-.-...++.++..+.   ++    ++.+++.|+.+|...+
T Consensus       434 l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~---d~----~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL---DS----NKRVQEAACSAFATLE  506 (888)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS---SS----CHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc---CC----CHHHHHHHHHHHHHHH
Confidence            3445555544444457888999999999887532211111112345666666662   22    5889999999998433


Q ss_pred             CCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-h-hHHHhhcccccHHHHHHHhcC--------
Q 038250          204 PLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-R-KVNVLLDIEGAIEPLFKLIKE--------  271 (444)
Q Consensus       204 ~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~-~~~~i~~~~g~i~~Lv~ll~~--------  271 (444)
                      ..   ....+..  ...++.|+..+.......+..+..++..++.... . .+..+ . ...++.+++.+..        
T Consensus       507 ~~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~-~-~~l~~~l~~~~~~~~~~~~~~  581 (888)
T d1qbkb_         507 EE---ACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY-I-QMLMPPLIQKWNMLKDEDKDL  581 (888)
T ss_dssp             HH---HTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHH-H-HHHHHHHHHHHTTSCTTCTTH
T ss_pred             HH---hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHH-H-HHHHHHHHHHHHhcccchHHH
Confidence            21   1111221  2345666666666565555555556655532110 0 00000 0 0111222211110        


Q ss_pred             ---------------------------------------------------CCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250          272 ---------------------------------------------------PICPTATKASLVVVYRTITSASATEKPIQ  300 (444)
Q Consensus       272 ---------------------------------------------------~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  300 (444)
                                                                         ..+......++.++..+...-.  .....
T Consensus       582 ~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~--~~~~~  659 (888)
T d1qbkb_         582 FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQ  659 (888)
T ss_dssp             HHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHT--TTTHH
T ss_pred             HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhh--hhhhh
Confidence                                                               0012233334444444433211  01122


Q ss_pred             HHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH-HHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcccc
Q 038250          301 KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR-GDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNE  379 (444)
Q Consensus       301 ~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  379 (444)
                      .+.....++.++..+.+.+..+++.|..+|+.|+...... ... . ...++.+++.+......++..|+++++.|+...
T Consensus       660 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~-l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-I-ADFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-H-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH-H-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            2333456777778888888899999999999887521111 000 0 112334444343345578889999999998754


Q ss_pred             ccchHHHHHHHHhhChHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Q 038250          380 EREEKTAFAEALQVGAFQKLLLLLQVGCA-DKTKEHVSELLKLLN  423 (444)
Q Consensus       380 ~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~-~~~k~~a~~ll~~l~  423 (444)
                      +.    .... .-..+++.|+.+++.... ..++++++..+..+.
T Consensus       738 ~~----~~~p-y~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~  777 (888)
T d1qbkb_         738 GI----EMQP-YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLG  777 (888)
T ss_dssp             GG----GGGG-GSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             HH----Hhhh-hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            32    1111 114678899999987533 458888888665554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00047  Score=65.29  Aligned_cols=241  Identities=11%  Similarity=0.019  Sum_probs=145.1

Q ss_pred             ChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS  217 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g  217 (444)
                      +.+.+..|+..+..+.......-. ........+.+..++.   +    ++++++..++.+|..++....+.-.......
T Consensus       186 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~----~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~  258 (458)
T d1ibrb_         186 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---C----PDTRVRVAALQNLVKIMSLYYQYMETYMGPA  258 (458)
T ss_dssp             CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT---C----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTT
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhc---C----CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            456788888888888754332211 1111123334444442   2    2688999998888855443333222222233


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH---------------------HHhhcccccHHHHHHHhcCC----
Q 038250          218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV---------------------NVLLDIEGAIEPLFKLIKEP----  272 (444)
Q Consensus       218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~---------------------~~i~~~~g~i~~Lv~ll~~~----  272 (444)
                      ..+.+...+.+.+.+++..|+..+..++.......                     ...  ....++.+...+...    
T Consensus       259 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~  336 (458)
T d1ibrb_         259 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA--LQYLVPILTQTLTKQDEND  336 (458)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH--HHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHH--HHHHhhhHHhhhhcchhhh
Confidence            44556666777888999999999988843221110                     001  123445555555421    


Q ss_pred             --CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH--HHHhcCCC
Q 038250          273 --ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR--GDAYNNSL  348 (444)
Q Consensus       273 --~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g  348 (444)
                        .+...+..+..++..++....    .  .+. ...++.+.+.+.+.+..+++.|+.+|..++......  ...  -..
T Consensus       337 ~~~~~~~~~~a~~~l~~l~~~~~----~--~~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~--l~~  407 (458)
T d1ibrb_         337 DDDDWNPCKAAGVCLMLLATCCE----D--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQ  407 (458)
T ss_dssp             CTTCCSHHHHHHHHHHHHHHHTT----T--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT--TTT
T ss_pred             ccccccHHHHHHHHHHHHHHhcc----H--hhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH--HHH
Confidence              123577888888888876543    1  122 235667777788888889999999999998633211  112  135


Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh
Q 038250          349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ  404 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~  404 (444)
                      .++.++..+.+.++.++..|+++|..++...+.       .....-.+++++..|-
T Consensus       408 i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~-------~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         408 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-------AAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG-------GCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc-------ccchhhHHHHHHHHHh
Confidence            788888888888999999999999999875331       1112344677776543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=5.9e-05  Score=57.86  Aligned_cols=107  Identities=18%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250          227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG  306 (444)
Q Consensus       227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g  306 (444)
                      ++.++.+|..|+.+|..+           +  ...+++|+.+|+++ ++.++..|+++|.++..              .+
T Consensus         2 ~D~~~~VR~~A~~aL~~~-----------~--~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--------------~~   53 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRM-----------G--DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--------------ER   53 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSC-----------S--STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--------------HH
T ss_pred             CCcCHHHHHHHHHHHHHh-----------C--HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--------------hh
Confidence            344555666666655543           1  24578899999988 89999999998875531              13


Q ss_pred             cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250          307 LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL  372 (444)
Q Consensus       307 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  372 (444)
                      +++.|+.+|.+.++.++..|+.+|..+..           .+.++.|..++...++.+++.|+.+|
T Consensus        54 ~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          54 AVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             hHHHHHhhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            68999999999999999999999987742           34567777877777889999888876

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=8.4e-05  Score=56.94  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHH
Q 038250          306 GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKT  385 (444)
Q Consensus       306 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~  385 (444)
                      .+++.|+++|.+.+..++..|+.+|..+..           .+.++.|++++...++.++..|+.+|..+..        
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc--------
Confidence            367899999999999999999999987643           2457889999988899999999999988765        


Q ss_pred             HHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250          386 AFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK  420 (444)
Q Consensus       386 ~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~  420 (444)
                             .++++.|..+++.. ++.+|+.|...|.
T Consensus        83 -------~~~~~~L~~ll~d~-~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 -------ERVRAAMEKLAETG-TGFARKVAVNYLE  109 (111)
T ss_dssp             -------HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             -------cchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence                   24678888888877 8999998887664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=0.0019  Score=61.42  Aligned_cols=246  Identities=12%  Similarity=0.077  Sum_probs=157.8

Q ss_pred             CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh---hccc-CC-cHHHHHHHHhcCCHHHHHHHHHHHH
Q 038250          168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT---YLGS-AS-SMRCMVWFLKSGDLSRRRNAVLVLR  242 (444)
Q Consensus       168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~---~i~~-~g-~i~~Lv~lL~~~~~~~~~~A~~~L~  242 (444)
                      .++..++++|...  +    ..++...++..+..++..++....   .+.+ .. .-+++..+|.+++.-....+..++.
T Consensus        74 ~~~~~~l~lL~~~--s----k~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~  147 (477)
T d1ho8a_          74 KTLIPLIHLLSTS--D----NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS  147 (477)
T ss_dssp             TTHHHHHHHHHSC--C----CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc--C----cHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHH
Confidence            3688899999532  2    467788888877766655442211   1222 22 2344555555556666677777777


Q ss_pred             HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhcc--
Q 038250          243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDA--  318 (444)
Q Consensus       243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~--  318 (444)
                      .+++......... ...--...+...+....+......++.+|..|...++    .|..+..  ...+++|+++|...  
T Consensus       148 ll~~~~~~~~~~~-e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~----~R~~fw~~~~~~~~~l~~il~~a~~  222 (477)
T d1ho8a_         148 LLVQNGLHNVKLV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE----YRDVIWLHEKKFMPTLFKILQRATD  222 (477)
T ss_dssp             HHTSTTTCCHHHH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH----HHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHhccccccchH-HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc----HHHHHHHcccchHHHHHHHHHHHhc
Confidence            7754433322222 1101112233333333367777888888999998876    7888754  55788888888631  


Q ss_pred             ---------------ccchHHHHHHHHHHhcCChhhHHHHhcCC--CChHHHHHHHhhc-ChhHHHHHHHHHHHHccccc
Q 038250          319 ---------------QRSLCEKALSVLDGLCSSDYGRGDAYNNS--LIFPVIVKKILRV-SDLATEFAVSILWKLCKNEE  380 (444)
Q Consensus       319 ---------------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~  380 (444)
                                     +..++-.++-+++.|+..++....+ .+.  +.|+.+++++... .+.+...++.+|.|+.....
T Consensus       223 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l-~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~  301 (477)
T d1ho8a_         223 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRV  301 (477)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHTTSHHHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSS
T ss_pred             ccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHH-HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence                           2356788999999999988888888 443  4589999988664 67888999999999987544


Q ss_pred             cchHHHH-HHHHhhChHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhc
Q 038250          381 REEKTAF-AEALQVGAFQKLLLLLQVG--CADKTKEHVSELLKLLNPHR  426 (444)
Q Consensus       381 ~~~~~~~-~~~~~~g~l~~Ll~ll~~~--~~~~~k~~a~~ll~~l~~~~  426 (444)
                      ..+.... ..|+..+++ +++..|+..  .++.+.+--..+-..|...-
T Consensus       302 ~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~  349 (477)
T d1ho8a_         302 KQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEY  349 (477)
T ss_dssp             TTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3223333 345566666 556666654  36788888777777776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.011  Score=60.52  Aligned_cols=278  Identities=13%  Similarity=0.055  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT  200 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~  200 (444)
                      -++.++..+.+..  .+...+..++..|..++.+-..  ..+..  ...++.++..+.+.     +.+.+++..|+.++.
T Consensus       129 li~~L~~~l~~~~--~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~-----~~~~~v~~~a~~~l~  199 (876)
T d1qgra_         129 LIPQLVANVTNPN--STEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKE-----EPSNNVKLAATNALL  199 (876)
T ss_dssp             HHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTT-----CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCc-----CccHHHHHHHHHHHH
Confidence            3555666555431  2345667788899888764321  11211  24567777777421     124678888888887


Q ss_pred             hhcCCChhhhhh-cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHH
Q 038250          201 LLFPLAGEGLTY-LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTAT  278 (444)
Q Consensus       201 ~~l~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~  278 (444)
                      ..+......-.. ....-.++.+...+.+.+.+++..++..|..+....++. ...+ . ....+.+...+.+. +..+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~~~  276 (876)
T d1qgra_         200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVA  276 (876)
T ss_dssp             HHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccc-cHHHH
Confidence            444332221110 111224566667777889999999999999997554432 2333 2 23445555666665 67777


Q ss_pred             HHHHHHHHHHhcCCCC-----------------CCchhHHHHhcCcHHHHHHHhhcc-------ccchHHHHHHHHHHhc
Q 038250          279 KASLVVVYRTITSASA-----------------TEKPIQKFVDMGLVSLLLEMLVDA-------QRSLCEKALSVLDGLC  334 (444)
Q Consensus       279 ~~a~~aL~~L~~~~~~-----------------~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~  334 (444)
                      ..+...+..++.....                 ...+.........++.+...+...       +..++..|..+|..++
T Consensus       277 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~  356 (876)
T d1qgra_         277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  356 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence            7777777666542110                 000111112223444555555421       2346777777777776


Q ss_pred             CChhhHHHHhcCCCChHHHHHHHh----hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250          335 SSDYGRGDAYNNSLIFPVIVKKIL----RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK  410 (444)
Q Consensus       335 ~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~  410 (444)
                      ....        ..+++.++..+.    +.+...++.++.++..+.....   .... .-.-...++.++..+.+. ++.
T Consensus       357 ~~~~--------~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~d~-~~~  423 (876)
T d1qgra_         357 TCCE--------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQL-KPLVIQAMPTLIELMKDP-SVV  423 (876)
T ss_dssp             HHHG--------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHH-HHHHHHHHHHHHHHHTCS-SHH
T ss_pred             HHhh--------hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhh---HHHH-HHHHHHHHHHHHHhhcCC-ccH
Confidence            4221        123445544443    3466777888888888776321   2222 222356778888999877 899


Q ss_pred             HHHHHHHHHHHHHhh
Q 038250          411 TKEHVSELLKLLNPH  425 (444)
Q Consensus       411 ~k~~a~~ll~~l~~~  425 (444)
                      ++..|.+.+..+.+.
T Consensus       424 vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         424 VRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0002  Score=77.48  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=132.8

Q ss_pred             chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250          188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK  267 (444)
Q Consensus       188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~  267 (444)
                      |++++.-|+.-|...+..+.-....-.....++.|+.+|.+.+.++|..|+.+|..|+....+.  .+   ...++.|+.
T Consensus        16 D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~---~~l~~~L~~   90 (1207)
T d1u6gc_          16 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV---ETIVDTLCT   90 (1207)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH---HHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hH---HHHHHHHHH
Confidence            7999999988777555432211111112346899999999999999999999999996543321  22   356788888


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCCCCC--CchhHHHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHHHHh
Q 038250          268 LIKEPICPTATKASLVVVYRTITSASAT--EKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAY  344 (444)
Q Consensus       268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~--~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~  344 (444)
                      .+.++ +...+..+..+|..+...-...  +......+-...++.|...+.. .+..++..++.+|..+.......-.- 
T Consensus        91 ~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~-  168 (1207)
T d1u6gc_          91 NMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-  168 (1207)
T ss_dssp             HTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-
T ss_pred             HhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH-
Confidence            88776 5677888888887765432100  0011111222234444444433 35667888898888876421100000 


Q ss_pred             cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          345 NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       345 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .....++.++..+.+.+..+++.|+.+|..++...+.   .     .-...+..++..+..+.+...++.+..++..+.+
T Consensus       169 ~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~-----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~  240 (1207)
T d1u6gc_         169 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I-----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  240 (1207)
T ss_dssp             THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---H-----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            0011344455555556778899999999999885431   1     1135677777766655455566666666666654


Q ss_pred             h
Q 038250          425 H  425 (444)
Q Consensus       425 ~  425 (444)
                      .
T Consensus       241 ~  241 (1207)
T d1u6gc_         241 Q  241 (1207)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.022  Score=57.82  Aligned_cols=280  Identities=13%  Similarity=0.058  Sum_probs=154.8

Q ss_pred             HHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250          126 EINCNITTACKSE-DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP  204 (444)
Q Consensus       126 ~ll~~L~~~~~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~  204 (444)
                      +++..|.....++ +...+..|+..|..++......-..+. ....+.|..++......  +.+..++..|+.++...+.
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~-~~~~~il~~i~~~~~~~--~~~~~v~~~a~~~l~~~~~  210 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV-SSSNNILIAIVQGAQST--ETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG-GGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHH
Confidence            4444443333222 345567788889888765332222111 12223333333211111  2257889999998885444


Q ss_pred             CChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHH-HHhcCCCChHHHHHH
Q 038250          205 LAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLF-KLIKEPICPTATKAS  281 (444)
Q Consensus       205 ~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~a  281 (444)
                      .-..+-. .......++.+...+.+++++++..+..+|..++...++. ...+   ...+..+. ...++. ++.++..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l---~~~l~~l~~~~~~~~-~~~v~~~~  286 (861)
T d2bpta1         211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM---EQALYALTIATMKSP-NDKVASMT  286 (861)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH---HHTHHHHHHHHTTCS-SHHHHHHH
T ss_pred             HHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCc-cHHHHHHH
Confidence            3333221 1112345677888888899999999999999996543322 2222   13344443 333444 78888888


Q ss_pred             HHHHHHHhcCCCC-------------CCchhHHHHhcCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChhhHH
Q 038250          282 LVVVYRTITSASA-------------TEKPIQKFVDMGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDYGRG  341 (444)
Q Consensus       282 ~~aL~~L~~~~~~-------------~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~  341 (444)
                      ...+..++.....             ...+...-.-...++.+...+...       +...+..+..+|..++....   
T Consensus       287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  363 (861)
T d2bpta1         287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---
Confidence            8888777643210             000000001123456666666532       22355666666666654221   


Q ss_pred             HHhcCCCChHHHHHHH----hhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          342 DAYNNSLIFPVIVKKI----LRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       342 ~i~~~~g~i~~Lv~ll----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                           ...++.+...+    .+.+...++.|+.++..++....   .... .-.-..+++.++..+... ++.+|..|.+
T Consensus       364 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~---~~~~-~~~l~~~l~~l~~~l~d~-~~~vr~~a~~  433 (861)
T d2bpta1         364 -----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD---KVQR-TYYVHQALPSILNLMNDQ-SLQVKETTAW  433 (861)
T ss_dssp             -----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHH-HHHHHHHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             -----hhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc---hhhH-HHHHHHHHHHHHHHhcCc-chhhhhHHHH
Confidence                 12334444333    33466778889889988887422   2222 222245788888888877 8999999999


Q ss_pred             HHHHHHhh
Q 038250          418 LLKLLNPH  425 (444)
Q Consensus       418 ll~~l~~~  425 (444)
                      .+..+...
T Consensus       434 ~l~~l~~~  441 (861)
T d2bpta1         434 CIGRIADS  441 (861)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.01  Score=60.58  Aligned_cols=258  Identities=9%  Similarity=0.010  Sum_probs=154.7

Q ss_pred             CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh-h-----
Q 038250          138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL-T-----  211 (444)
Q Consensus       138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~-~-----  211 (444)
                      .|.+.+.+|-..|..+...++.        |.+..|.+.+.+.  +   .+..++..|+-.|.+.+....... .     
T Consensus        13 ~d~~~r~~Ae~~L~~~~~~~~~--------~f~~~L~~i~~~~--~---~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~   79 (876)
T d1qgra_          13 PDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANP--G---NSQVARVAAGLQIKNSLTSKDPDIKAQYQQR   79 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCT--T---SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcChh--------HHHHHHHHHHhcC--C---CCHHHHHHHHHHHHHHhhccccchhhhhhcc
Confidence            4888999999999998776432        3778888888532  1   246678777777764444332111 0     


Q ss_pred             --hcc---cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHHHHHHH
Q 038250          212 --YLG---SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKASLVVV  285 (444)
Q Consensus       212 --~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL  285 (444)
                        .+-   ....-..++..|.+.+. .+..++.++..++.. + ...  ..-.+.++.|++.+.++. +...+..++.+|
T Consensus        80 ~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~-~-~p~--~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l  154 (876)
T d1qgra_          80 WLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACA-E-IPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAI  154 (876)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHH-H-GGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHH-H-CCc--cccHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence              011   12334667777776653 455678888888532 1 111  112478999999987653 356788899999


Q ss_pred             HHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHH-hcCCCChHHHHHHHhhc
Q 038250          286 YRTITSASATEKPIQKFVD--MGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDA-YNNSLIFPVIVKKILRV  360 (444)
Q Consensus       286 ~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i-~~~~g~i~~Lv~ll~~~  360 (444)
                      ..++..-.     ...+..  ...++.++..+.+.  +..++..++.++.++.......... ....-.++.+...+...
T Consensus       155 ~~i~~~~~-----~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  229 (876)
T d1qgra_         155 GYICQDID-----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  229 (876)
T ss_dssp             HHHHHHSC-----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHCC-----HHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            99976432     112211  34678888888644  4568888888888776422211100 00001234444444456


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250          361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN  423 (444)
Q Consensus       361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~  423 (444)
                      +..++..++..|..+....+.    ....-+...+...+...+.+. .+.++..+...+..+.
T Consensus       230 ~~~v~~~~~~~l~~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         230 DTRVRVAALQNLVKIMSLYYQ----YMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVC  287 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSGG----GCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHH
Confidence            778889999999998875442    222223344555566666666 6777766666544443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.14  Score=46.60  Aligned_cols=185  Identities=11%  Similarity=0.083  Sum_probs=115.9

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhccc----ccccchHHHHHHHHHHHh
Q 038250          127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKT----CLDENVSVLEEILSTLTL  201 (444)
Q Consensus       127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~----~~~~~~~~~~~a~~~L~~  201 (444)
                      .+.+|.+..   ..+.....+..|+--.+.++-.+. .+ ..+|+..|+.+|......    ....+...+..++.+|..
T Consensus         7 yv~~l~~~~---~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLka   82 (343)
T d2bnxa1           7 YIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA   82 (343)
T ss_dssp             HHHHHTSCC---CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---CccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Confidence            455565432   223334445555544444444332 34 567889999999654211    112356688889999995


Q ss_pred             hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--h----------hhHHHhhcccccHHHHHHHh
Q 038250          202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD--H----------RKVNVLLDIEGAIEPLFKLI  269 (444)
Q Consensus       202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~--~----------~~~~~i~~~~g~i~~Lv~ll  269 (444)
                      ++.........+...+++..|+..|.+.+..++..|..+|..++...  +          +..... ...+-..++|..|
T Consensus        83 lmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~-~e~~RF~~lv~~l  161 (343)
T d2bnxa1          83 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM-DEVERFQPLLDGL  161 (343)
T ss_dssp             HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH-HTSCTTHHHHHHT
T ss_pred             HhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh-cCCCcHHHHHHHH
Confidence            55544334445667899999999999999999999999999996321  1          122233 2346778999989


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhc
Q 038250          270 KEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVD  317 (444)
Q Consensus       270 ~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~  317 (444)
                      +++.+.+.+..++..+-.|..+.++.   -..+..+..+|..+ +++-|..
T Consensus       162 ~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~  211 (343)
T d2bnxa1         162 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE  211 (343)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred             hccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHc
Confidence            87756677777776666666655410   12356666776555 4555553

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.57  Score=41.35  Aligned_cols=205  Identities=9%  Similarity=0.091  Sum_probs=148.0

Q ss_pred             cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH----HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250          213 LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV----NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT  288 (444)
Q Consensus       213 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  288 (444)
                      +...+.+..|+..|..=+-+.|..++.+..++.......+    +.+.....++..|+.-.+   +++..-.+-..|+..
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHHH
Confidence            3346788899999988899999999999999964433222    444344455555555554   456667777778888


Q ss_pred             hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc-CChhhHHHHhcC--CCChHHHHHHHhhcChhHH
Q 038250          289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC-SSDYGRGDAYNN--SLIFPVIVKKILRVSDLAT  365 (444)
Q Consensus       289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~ll~~~~~~~~  365 (444)
                      ..++.    ....+....-+..+.+.+..++-++...|..++..|- .+...-...+..  ......+-++|.+++-..+
T Consensus       142 ik~e~----lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         142 IRHEP----LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HTSHH----HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HhhHH----HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            88876    8888899889999999999889999999999999765 454433333211  1245566677777788889


Q ss_pred             HHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250          366 EFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA  427 (444)
Q Consensus       366 ~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~  427 (444)
                      ..++..|..+-....  +-.....-+ +..-+..++.+|++. +..++-.|--+.+.+....+
T Consensus       218 RqSlKLLgelLldr~--N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         218 RQSLKLLGELLLDRH--NFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHHHHHHHHHHSGG--GHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhhh--HHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCC
Confidence            999999999876422  133333333 566677788889888 89999999889999887664

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.43  Score=42.15  Aligned_cols=186  Identities=10%  Similarity=0.109  Sum_probs=133.9

Q ss_pred             ChhHHHHHHHHHHHHhccCcccchhHhh---cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250          139 DQAGCRDLVAKIKKWTKESDRNKRCIVD---NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS  215 (444)
Q Consensus       139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~  215 (444)
                      +-+.+..+......+.+.....+...++   .. -..|..++.-+      +++++--.+-..|+ -|..++.-...|..
T Consensus        82 ~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~-~eil~~L~~gy------e~~eiAl~~G~mLR-Ecik~e~lak~iL~  153 (330)
T d1upka_          82 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGY------ESPEIALNCGIMLR-ECIRHEPLAKIILW  153 (330)
T ss_dssp             CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGG------GSTTTHHHHHHHHH-HHHTSHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC-HHHHHHHHhhc------CCcchhhhhhHHHH-HHHhhHHHHHHHHc
Confidence            7788888888888888776655533222   22 23444444322      24666667777777 66667766666777


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcc-cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250          216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDI-EGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS  293 (444)
Q Consensus       216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  293 (444)
                      ...+..+......++=++...|..++..|...+.. ..+.+... .-++....++|.++ +.-.++.++..|..+-.+..
T Consensus       154 s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLgelLldr~  232 (330)
T d1upka_         154 SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRH  232 (330)
T ss_dssp             SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGG
T ss_pred             cHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhhhh
Confidence            77788888999999999999999999999777664 33333111 23566777888888 88899999999999998876


Q ss_pred             CCCchhHHH----HhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250          294 ATEKPIQKF----VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD  337 (444)
Q Consensus       294 ~~~~~~~~i----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  337 (444)
                          |...|    .+..-+..++.+|++.+..++-.|..+....+..+
T Consensus       233 ----N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         233 ----NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             ----GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             ----HHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence                55444    33557899999999999999999998887766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.95  E-value=0.0062  Score=52.70  Aligned_cols=64  Identities=11%  Similarity=-0.023  Sum_probs=33.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHH-----HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHH
Q 038250          263 EPLFKLIKEPICPTATKASLVV-----VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSV  329 (444)
Q Consensus       263 ~~Lv~ll~~~~~~~~~~~a~~a-----L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~  329 (444)
                      +.|..+++++ ++.++..++..     |..+..+.+  ...+..++..-..+.|..++.+.++.++..++..
T Consensus       117 ~~L~~Ll~D~-d~~VR~~aa~~~~~~~L~~L~~D~d--~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         117 EQLEQMAADR-DYLVRAYVVQRIPPGRLFRFMRDED--RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             GGGGGGTTCS-SHHHHHHHHHHSCGGGGGGTTTCSC--HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHHHHHhcCC-CHHHHHHHHhccchhHHHHHhcCCC--HHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            4455556655 56666655543     222222222  2234444444445666666666677776666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=2  Score=38.48  Aligned_cols=126  Identities=18%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             hhHHHHhcCcHHHHHHHhhc----c-------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250          298 PIQKFVDMGLVSLLLEMLVD----A-------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE  366 (444)
Q Consensus       298 ~~~~i~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  366 (444)
                      ....| .++|+..|+.+|..    +       +......++.+|..|.....|...++.+..++..++..+.+....++.
T Consensus        38 Wv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~  116 (343)
T d2bnxa1          38 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  116 (343)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHH
Confidence            56666 56788888888851    1       234677899999999999999999989999999999988888888999


Q ss_pred             HHHHHHHHHccccc--cchHHHHH------HHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250          367 FAVSILWKLCKNEE--REEKTAFA------EALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP  424 (444)
Q Consensus       367 ~a~~~L~~L~~~~~--~~~~~~~~------~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~  424 (444)
                      .|..+|..+|..+.  .|......      ..-+.+-+.+++.-+..+.+...+-.+..+++.+-.
T Consensus       117 ~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~  182 (343)
T d2bnxa1         117 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  182 (343)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHc
Confidence            99999999986432  22233322      222456778888888877566666666666666653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.55  E-value=5.4  Score=35.31  Aligned_cols=131  Identities=12%  Similarity=0.127  Sum_probs=76.8

Q ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc----CCCChHHHHHHHHHHHHHhc
Q 038250          219 MRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK----EPICPTATKASLVVVYRTIT  290 (444)
Q Consensus       219 i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~~a~~aL~~L~~  290 (444)
                      +..+..++.+    +++.++..+..++++|....-......  ....++.+...+.    .+ +.+.+..++.+|+|+..
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~--~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~  201 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC--PDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ  201 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC--CGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhhccc-chHHHHHHHHHHhccCC
Confidence            5556666654    467888888888888843211111111  1234455555443    44 56667778889998863


Q ss_pred             CCCCCCchhHHHHhcCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--C
Q 038250          291 SASATEKPIQKFVDMGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--S  361 (444)
Q Consensus       291 ~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~  361 (444)
                      .              +.++.|..++...       +..++..|+.+|..++......  +      .+.+..++.+.  +
T Consensus       202 p--------------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--v------~~~l~~i~~n~~e~  259 (336)
T d1lsha1         202 P--------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--V------QEIVLPIFLNVAIK  259 (336)
T ss_dssp             G--------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--H------HHHHHHHHHCTTSC
T ss_pred             H--------------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--H------HHHHHHHHcCCCCC
Confidence            2              2467777777532       3568899999999987643211  1      23445555553  4


Q ss_pred             hhHHHHHHHHHHH
Q 038250          362 DLATEFAVSILWK  374 (444)
Q Consensus       362 ~~~~~~a~~~L~~  374 (444)
                      ..++-.|..+|..
T Consensus       260 ~EvRiaA~~~lm~  272 (336)
T d1lsha1         260 SELRIRSCIVFFE  272 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            5566666655544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.31  E-value=4.4  Score=35.95  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHhc
Q 038250          214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTIT  290 (444)
Q Consensus       214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~  290 (444)
                      +...++..+.+++.++..... .|...|..+........+.       +..+..+++++   .++.+...+.-++.+|..
T Consensus        85 GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~-------l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~  156 (336)
T d1lsha1          85 ATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRES-------LSYARELLNTSFIRNRPILRKTAVLGYGSLVF  156 (336)
T ss_dssp             CSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHH-------HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHH-------HHHHHHHHcCcccccchhHHHHHHHHHHHHHH
Confidence            345567778888877653333 3455555563222223333       34455565542   256677777777776643


Q ss_pred             C----CCCCCchhHHHHhcCcHHHHHHHhh----ccccchHHHHHHHHHHhc
Q 038250          291 S----ASATEKPIQKFVDMGLVSLLLEMLV----DAQRSLCEKALSVLDGLC  334 (444)
Q Consensus       291 ~----~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~  334 (444)
                      .    ..    .+.    ...++.+.+.+.    .++.+-+-.++.+|+|+-
T Consensus       157 ~~c~~~~----~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  200 (336)
T d1lsha1         157 RYCANTV----SCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG  200 (336)
T ss_dssp             HHHTTCS----SCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHhcCCC----CCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC
Confidence            2    22    111    123455555554    445555667888888875

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.54  E-value=0.078  Score=45.44  Aligned_cols=64  Identities=13%  Similarity=-0.032  Sum_probs=35.5

Q ss_pred             ChHHHHHHHhhcChhHHHHHHHHH-----HHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250          349 IFPVIVKKILRVSDLATEFAVSIL-----WKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE  417 (444)
Q Consensus       349 ~i~~Lv~ll~~~~~~~~~~a~~~L-----~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~  417 (444)
                      +.+.|..++...++.++..++..|     ..+...   .+...+..+.+. +.+.++..|... ++.+++.|+.
T Consensus       163 ~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D---~d~~VR~aaae~-~~~~ll~~L~D~-d~~VR~aA~~  231 (233)
T d1lrva_         163 PEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHD---PDWTVRLAAVEH-ASLEALRELDEP-DPEVRLAIAG  231 (233)
T ss_dssp             CGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGC---SSHHHHHHHHHH-SCHHHHHHCCCC-CHHHHHHHHC
T ss_pred             CHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhC---CCHHHHHHHHHh-ccHHHHHHhCCC-CHHHHHHHHH
Confidence            345555555555666776666543     233332   234555555544 335677777544 8888887753

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.38  E-value=0.39  Score=33.06  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=36.3

Q ss_pred             ccccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250           36 HFRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT   83 (444)
Q Consensus        36 ~~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~   83 (444)
                      .-.|.||.+-.-     +|.+.  .|+.-.|+.|.+==. ..++..||.|+..+.
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-keG~q~CpqCkt~Yk   69 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-REGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-HTSCSSCTTTCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHH-hccCccCcccCChhh
Confidence            358999998764     44443  689999999987444 588999999988775

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.2  Score=33.19  Aligned_cols=43  Identities=16%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             ccccccccccCcCceecC----CcchhcHHHHHHHHHhcC---CCCCCCC
Q 038250           36 HFRCPISLDLMKDPVTLS----TGITYDRENIEKWIHEDG---NITCPVT   78 (444)
Q Consensus        36 ~~~Cpic~~~~~~Pv~~~----cg~~~c~~ci~~~~~~~~---~~~CP~c   78 (444)
                      .+.|.+|.+-+.|-..+.    -+|.||-.|-..+++.++   ...||.-
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG   57 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   57 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCC
Confidence            479999999999875543    379999999999986543   3467653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.27  E-value=4.2  Score=40.96  Aligned_cols=140  Identities=9%  Similarity=0.008  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250          123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL  202 (444)
Q Consensus       123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~  202 (444)
                      +++.+...|..+.   +++.+++|=..|..+.+. |         |.+..|++++.+.  +   .+..++..|+-.|.+.
T Consensus         3 d~~~l~~ll~~s~---~~~~~k~Ae~~L~~~~~~-p---------~f~~~L~~i~~~~--~---~~~~iR~~A~i~lKn~   64 (959)
T d1wa5c_           3 DLETVAKFLAESV---IASTAKTSERNLRQLETQ-D---------GFGLTLLHVIAST--N---LPLSTRLAGALFFKNF   64 (959)
T ss_dssp             HHHHHHHHHHHTT---SGGGHHHHHHHHHHHHTS-T---------THHHHHHHHHHCT--T---SCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCC---ChHHHHHHHHHHHHHHcC-C---------CHHHHHHHHHhcC--C---CCHHHHHHHHHHHHHH
Confidence            4566677776665   778889999999888543 3         5788888888532  1   1356777676666533


Q ss_pred             cCC-----------ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250          203 FPL-----------AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE  271 (444)
Q Consensus       203 l~~-----------~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~  271 (444)
                      +..           +++.|..     .-..|+..|.+.+..++...+.++..++..+  .-..-   .+.++.|++.+++
T Consensus        65 i~~~W~~~~~~~~i~~e~k~~-----Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d--~p~~W---p~ll~~l~~~l~s  134 (959)
T d1wa5c_          65 IKRKWVDENGNHLLPANNVEL-----IKKEIVPLMISLPNNLQVQIGEAISSIADSD--FPDRW---PTLLSDLASRLSN  134 (959)
T ss_dssp             HHHHSBCSSSCBSSCHHHHHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--STTTC---TTHHHHHHTTCCS
T ss_pred             HHHhcccccccCCCCHHHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh--Ccccc---HHHHHHHHHHhCC
Confidence            321           1222222     2245666676778889999999999996432  11111   4778999999988


Q ss_pred             CCChHHHHHHHHHHHHHhcC
Q 038250          272 PICPTATKASLVVVYRTITS  291 (444)
Q Consensus       272 ~~~~~~~~~a~~aL~~L~~~  291 (444)
                      + ++.....++.+|..++..
T Consensus       135 ~-~~~~~~~~L~~l~~i~k~  153 (959)
T d1wa5c_         135 D-DMVTNKGVLTVAHSIFKR  153 (959)
T ss_dssp             S-CTTHHHHHHHHHHHHHGG
T ss_pred             C-CHHHHHHHHHHHHHHHHH
Confidence            7 778888889999888753

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=0.24  Score=26.43  Aligned_cols=13  Identities=23%  Similarity=0.513  Sum_probs=8.5

Q ss_pred             ccccccccccCcC
Q 038250           36 HFRCPISLDLMKD   48 (444)
Q Consensus        36 ~~~Cpic~~~~~~   48 (444)
                      .|.||||++-|+.
T Consensus         3 p~~cpic~qrfkr   15 (32)
T d2epqa1           3 PYSCPVCGLRFKR   15 (32)
T ss_dssp             SSEETTTTEECSC
T ss_pred             CcccchHHHHhhc
Confidence            3677777776654