Citrus Sinensis ID: 038326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MYPRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKTNSLGEAGSEPGTAAPSQN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MYPRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDEEAEKCSSskkkeakkpiMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERhdedlkesigfqeaksvRARSKTTAQKTnslgeagsepgtaapsqn
Flexible Loop (DISEMBL)
myprsaskvgemlsaglgevvdkehERLVARKsiieklkleehkrqliemeweeESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDEEAEkcssskkkeakkpimdqqlRERQEMDKKLRKLAKTLNYleranreeaIPLIEAAFQQRLEEERVLHEIEQqqevelsrerhdedlkesigfqeaksvrarskttaqktnslgeagsepgtaapsqn
Low Complexity Region (SEG)
MYPRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDeeaekcssskkkeakkPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKTNSLGEAGSEPGTAAPSQN
Disordered region (IsUnstruct)
****************************V***SII*********************************************LRKNQRILLIQLEGA********************************************LNYLE******AIPLIEAAF***********************************************************************
Disordered Region (DISOPRED)
********************************************************************************************************************************************NYLERANREEAI******************************************************************************
Disordered Region (DISEMBL)
*********GEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWE*******************KRLAAEFELRKNQRILLIQLEGAQALLD******************MDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEA********************************
Disordered Region (DISPRO)
MYPRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEES*R*******TAEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQK*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYPRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRKNQRILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEAIPLxxxxxxxxxxxxxxxxxxxxxQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKTNSLGEAGSEPGTAAPSQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q40554	958	Eukaryotic translation in	N/A	no	0.808	0.194	0.591	2e-43
Q9LD55	987	Eukaryotic translation in	yes	no	0.791	0.184	0.541	1e-37
Q9XHR2	962	Eukaryotic translation in	N/A	no	0.769	0.183	0.48	3e-25
Q86B20	1030	Eukaryotic translation in	yes	no	0.626	0.139	0.311	0.0001

>sp|Q40554|EIF3A_TOBAC Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 152/208 (73%), Gaps = 22/208 (10%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP  + A+K+GE LS  L E+V+KEH+RL+ARKSIIEK K EE +R L+EME  EE++R
Sbjct: 536 IYPPAKKAAKLGEALS-NLAEIVEKEHKRLLARKSIIEKRK-EEQERLLLEMERVEETKR 593

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILL----IQLEGAQALLDEEAEKCSSSKKKEA 114
             R  +K  EEAEQKR+AAE+E R+NQRIL      +LE AQALL  EAEK S  KKK  
Sbjct: 594 --RDVQKMTEEAEQKRIAAEYEQRRNQRILKEIEDRELEEAQALL-HEAEKRSKRKKKPV 650

Query: 115 -------KKPIM----DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRL 163
                  KK IM    ++QLRERQEM+KKL K AK++++LERA REEA PLIE+AF+QRL
Sbjct: 651 LEGEKMTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHLERAKREEAAPLIESAFKQRL 710

Query: 164 EEERVLHEIEQQQEVELSRERHDEDLKE 191
            EE  LHE EQQQE+ELSR+RH  DL+E
Sbjct: 711 AEEAALHEREQQQEIELSRQRHAGDLEE 738

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Nicotiana tabacum (taxid: 4097)

>sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 144/207 (69%), Gaps = 25/207 (12%)

Query: 3   PRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQ 62
           P  ASK+  ++   L + V+KEH+RL+ARKSIIEK K E+ +RQ +EME EEE +R+  Q
Sbjct: 540 PSKASKLAGVI-PNLADTVEKEHKRLLARKSIIEKRK-EDQERQQLEMEREEEQKRLKLQ 597

Query: 63  QKKTAEEAEQKRLAAEFELRKNQRIL----LIQLEGAQALLDE--------------EAE 104
             K  EEAEQKRLAAE   R+ QRIL      +LE AQALL+E              + E
Sbjct: 598 --KLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGE 655

Query: 105 KCSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLE 164
           K +   K+  K+  + +QL+ERQEM+KKL+KLAKT++YLERA REEA PLIEAA+Q+RL 
Sbjct: 656 KVT---KQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLV 712

Query: 165 EERVLHEIEQQQEVELSRERHDEDLKE 191
           EER  +E EQQ+EVELS+ERH+ DLKE
Sbjct: 713 EEREFYEREQQREVELSKERHESDLKE 739

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XHR2|EIF3A_MAIZE Eukaryotic translation initiation factor 3 subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 128/200 (64%), Gaps = 23/200 (11%)

Query: 7   SKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKT 66
           SK+GE L   L  +V+ EH+RL+ARKSIIEK K EE +RQ++E E EEE +RM   QKKT
Sbjct: 542 SKLGESL-ISLAAIVENEHKRLLARKSIIEKRK-EELERQILEKEKEEEKKRM-SSQKKT 598

Query: 67  AEEAEQKRLAAEFELRKNQRILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIM------- 119
            +E E+ RL  E   R+  RI     E  +A    EA+K      K  KK ++       
Sbjct: 599 VDE-ERVRLLNEQRQREQDRIRREIEEKNKA----EAKKMLEDLNKAGKKHVVVEGELTK 653

Query: 120 --------DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHE 171
                   ++QL+ER EM+KKL+K AKT++YLERA R+E  PLIE AFQ+RLEEE++LHE
Sbjct: 654 EAYMELARNEQLKERHEMEKKLQKFAKTMDYLERAKRQEEAPLIEQAFQKRLEEEKILHE 713

Query: 172 IEQQQEVELSRERHDEDLKE 191
            EQ +E+ELS++ H  DL+E
Sbjct: 714 QEQLREIELSKQHHASDLQE 733

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Zea mays (taxid: 4577)

>sp|Q86B20|EIF3A_DICDI Eukaryotic translation initiation factor 3 subunit A OS=Dictyostelium discoideum GN=eif3A PE=1 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 26/170 (15%)

Query: 24  EHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEA--EQKRLAAEFEL 81
           EH R++ARK IIEK K+   ++  I+ + E E       QKK  E+   +Q+RL  + E 
Sbjct: 533 EHRRILARKEIIEKKKIYMEQQDRIKKQKEHEEL-----QKKIQEKVARDQQRLKEDMER 587

Query: 82  RKNQRILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLN 141
           R+ ++    + E  Q  LD+       +K                 EM  K+ K+AK L 
Sbjct: 588 REKEQA---EEESQQNQLDQTINAIDKAKV----------------EMKAKIAKIAKQLY 628

Query: 142 YLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKE 191
            LERA REE +P++E+  + +  E++   E  Q + ++L RE HD ++ E
Sbjct: 629 ILERAYREEELPVVESLQKTKAVEDKQYFESTQAEFLKLHREVHDRNVTE 678

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
296089739	884	unnamed protein product [Vitis vinifera]	0.786	0.204	0.592	2e-42
225450669	977	PREDICTED: eukaryotic translation initia	0.778	0.183	0.598	2e-42
356572345	957	PREDICTED: eukaryotic translation initia	0.808	0.194	0.617	2e-42
356505122	958	PREDICTED: eukaryotic translation initia	0.808	0.194	0.598	6e-42
6685538	958	RecName: Full=Eukaryotic translation ini	0.808	0.194	0.591	9e-42
449522901	970	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.804	0.190	0.580	1e-41
449435900	790	PREDICTED: eukaryotic translation initia	0.804	0.234	0.580	2e-41
224125084	994	predicted protein [Populus trichocarpa]	0.813	0.188	0.570	8e-40
255542824	994	Eukaryotic translation initiation factor	0.813	0.188	0.569	6e-39
224123680	972	predicted protein [Populus trichocarpa]	0.813	0.192	0.574	2e-37

>gi|296089739|emb|CBI39558.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 149/206 (72%), Gaps = 25/206 (12%)

Query: 4   RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQ 63
           + ASK+G+MLS GL E VDKEH+RL+ARKSIIEK K EE +RQL+EME EEES+R+  + 
Sbjct: 541 KKASKLGDMLS-GLAETVDKEHKRLLARKSIIEKRK-EEQERQLLEMEREEESKRL--KL 596

Query: 64  KKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDE--------------EAEK 105
           +K  EEAEQKRLA+E+E RK QRIL    E     AQALL E              E EK
Sbjct: 597 QKITEEAEQKRLASEYEQRKTQRILREIEERELEEAQALLQEAEKRSKKKGKKPIAEGEK 656

Query: 106 CSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEE 165
            +   K+   +  + +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEAAFQQRL E
Sbjct: 657 VT---KQSLMELALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQQRLVE 713

Query: 166 ERVLHEIEQQQEVELSRERHDEDLKE 191
           E+  HE EQQQE+E+SR+RHD DL+E
Sbjct: 714 EKAFHEHEQQQEIEVSRQRHDGDLRE 739

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450669|ref|XP_002283093.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A [Vitis vinifera]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/204 (59%), Positives = 148/204 (72%), Gaps = 25/204 (12%)

Query: 6   ASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKK 65
           ASK+G+MLS GL E VDKEH+RL+ARKSIIEK K EE +RQL+EME EEES+R+  + +K
Sbjct: 543 ASKLGDMLS-GLAETVDKEHKRLLARKSIIEKRK-EEQERQLLEMEREEESKRL--KLQK 598

Query: 66  TAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDE--------------EAEKCS 107
             EEAEQKRLA+E+E RK QRIL    E     AQALL E              E EK +
Sbjct: 599 ITEEAEQKRLASEYEQRKTQRILREIEERELEEAQALLQEAEKRSKKKGKKPIAEGEKVT 658

Query: 108 SSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEER 167
              K+   +  + +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEAAFQQRL EE+
Sbjct: 659 ---KQSLMELALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQQRLVEEK 715

Query: 168 VLHEIEQQQEVELSRERHDEDLKE 191
             HE EQQQE+E+SR+RHD DL+E
Sbjct: 716 AFHEHEQQQEIEVSRQRHDGDLRE 739

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572345|ref|XP_003554329.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Glycine max] gi|47076999|dbj|BAD18434.1| unnamed protein product [Homo sapiens]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 153/209 (73%), Gaps = 23/209 (11%)

Query: 1   MYPRSA--SKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP     SK+G +L   L EVV KEH+RL+ARKSIIEK K EE +RQL+EME EEES+R
Sbjct: 536 IYPPDGRPSKLGALLPT-LTEVVAKEHKRLLARKSIIEKRK-EEQERQLLEMEREEESKR 593

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSSSKK--- 111
            LR QK T EEAEQ+RLA E+E RKNQRIL    E     AQALL +EAEK    K    
Sbjct: 594 -LRLQKIT-EEAEQRRLATEYEQRKNQRILREIEERENEEAQALL-QEAEKRIKKKGKKP 650

Query: 112 -----KEAKKPIMD----QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQR 162
                K  K+ +M+    +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEAA+QQR
Sbjct: 651 IIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQR 710

Query: 163 LEEERVLHEIEQQQEVELSRERHDEDLKE 191
           L EER+LHE EQQQEVELS++RH+ DLKE
Sbjct: 711 LVEERLLHEREQQQEVELSKQRHEGDLKE 739

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505122|ref|XP_003521341.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Glycine max]

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 154/209 (73%), Gaps = 23/209 (11%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP  R +SK+G +L + L EVV KEH+RL+ARKSIIEK K EE +RQL+EME EEES+R
Sbjct: 536 IYPPDRRSSKLGALLPS-LTEVVAKEHKRLLARKSIIEKRK-EEQERQLLEMEREEESKR 593

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSSSKK--- 111
           +  +  K  EEAEQ+RLA EFE RKNQRIL    E     AQALL +EAEK    K    
Sbjct: 594 L--RLLKITEEAEQRRLATEFEQRKNQRILREIEERENEEAQALL-QEAEKRIKKKGKKP 650

Query: 112 -----KEAKKPIMD----QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQR 162
                K  K+ +M+    +QLRERQEM+KKL+KLAKT+++LERA REEA PLIEAA+QQR
Sbjct: 651 IIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQR 710

Query: 163 LEEERVLHEIEQQQEVELSRERHDEDLKE 191
           L EER+LH+ EQQQEVELS++RH+ DLKE
Sbjct: 711 LVEERLLHDREQQQEVELSKQRHEGDLKE 739

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6685538|sp|Q40554.1|EIF3A_TOBAC RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta gi|506471|emb|CAA56189.1| unnamed protein product [Nicotiana tabacum]

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 152/208 (73%), Gaps = 22/208 (10%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP  + A+K+GE LS  L E+V+KEH+RL+ARKSIIEK K EE +R L+EME  EE++R
Sbjct: 536 IYPPAKKAAKLGEALS-NLAEIVEKEHKRLLARKSIIEKRK-EEQERLLLEMERVEETKR 593

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILL----IQLEGAQALLDEEAEKCSSSKKKEA 114
             R  +K  EEAEQKR+AAE+E R+NQRIL      +LE AQALL  EAEK S  KKK  
Sbjct: 594 --RDVQKMTEEAEQKRIAAEYEQRRNQRILKEIEDRELEEAQALL-HEAEKRSKRKKKPV 650

Query: 115 -------KKPIM----DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRL 163
                  KK IM    ++QLRERQEM+KKL K AK++++LERA REEA PLIE+AF+QRL
Sbjct: 651 LEGEKMTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHLERAKREEAAPLIESAFKQRL 710

Query: 164 EEERVLHEIEQQQEVELSRERHDEDLKE 191
            EE  LHE EQQQE+ELSR+RH  DL+E
Sbjct: 711 AEEAALHEREQQQEIELSRQRHAGDLEE 738

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522901|ref|XP_004168464.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit A-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 151/212 (71%), Gaps = 27/212 (12%)

Query: 1   MYPR--SASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP    ASK  ++L   L ++VDKEH+RL+ARKSIIEK K EE +RQL+EME EEES+R
Sbjct: 536 IYPPVGKASKTSDIL-PDLADIVDKEHKRLLARKSIIEKRK-EELERQLLEMEREEESKR 593

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSSSKKKEA 114
           +  +  K  EEAEQKRLAAE+E RKNQR+     E     AQALL +EAEK    KKK +
Sbjct: 594 L--KLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALL-QEAEK-RVGKKKGS 649

Query: 115 KKPIMD---------------QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAF 159
           +KP++D               +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEA F
Sbjct: 650 RKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAEF 709

Query: 160 QQRLEEERVLHEIEQQQEVELSRERHDEDLKE 191
           QQRL EER++HE  QQ EVELS+ RH+ DLKE
Sbjct: 710 QQRLLEERMIHERNQQLEVELSKHRHEGDLKE 741

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435900|ref|XP_004135732.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Cucumis sativus]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 151/212 (71%), Gaps = 27/212 (12%)

Query: 1   MYPRS--ASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP    ASK  ++L   L ++VDKEH+RL+ARKSIIEK K EE +RQL+EME EEES+R
Sbjct: 488 IYPPVGKASKTSDIL-PDLADIVDKEHKRLLARKSIIEKRK-EELERQLLEMEREEESKR 545

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSSSKKKEA 114
           +  +  K  EEAEQKRLAAE+E RKNQR+     E     AQALL +EAEK    KKK +
Sbjct: 546 L--KLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALL-QEAEK-RVGKKKGS 601

Query: 115 KKPIMD---------------QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAF 159
           +KP++D               +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEA F
Sbjct: 602 RKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAEF 661

Query: 160 QQRLEEERVLHEIEQQQEVELSRERHDEDLKE 191
           QQRL EER++HE  QQ EVELS+ RH+ DLKE
Sbjct: 662 QQRLLEERMIHERNQQLEVELSKHRHEGDLKE 693

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125084|ref|XP_002319496.1| predicted protein [Populus trichocarpa] gi|222857872|gb|EEE95419.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/214 (57%), Positives = 150/214 (70%), Gaps = 27/214 (12%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEME------W 52
           +YP  + +SK+GE+L  GLGE+VDKEH+RL+ARKSIIEK K EE +RQL+EM        
Sbjct: 536 IYPPTKKSSKLGEIL-PGLGEIVDKEHKRLLARKSIIEKRK-EEQERQLLEMAGHLNYCL 593

Query: 53  EEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSS 108
           +EESRR+  +Q K  EEAEQKRLA E+E R  QRIL    E     AQALL+E+ ++   
Sbjct: 594 KEESRRL--KQLKITEEAEQKRLATEYEQRNKQRILREIEERELEEAQALLEEQEKRSKR 651

Query: 109 SKK-------KEAKKPIMD----QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEA 157
                     K  K+ +M+    +QLRERQEM+KKL+KL KT++YLERA REEA PLIEA
Sbjct: 652 KGGKKPILEGKVTKQILMERALSEQLRERQEMEKKLQKLVKTMDYLERAKREEAAPLIEA 711

Query: 158 AFQQRLEEERVLHEIEQQQEVELSRERHDEDLKE 191
           AFQQRL EE+ LHE EQQ E ELSR+RHD DLKE
Sbjct: 712 AFQQRLVEEKALHEHEQQLETELSRQRHDGDLKE 745

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542824|ref|XP_002512475.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223548436|gb|EEF49927.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 147/209 (70%), Gaps = 22/209 (10%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP  + +SKVG++L  GLGE+VDKEH+RL+ARKSIIEK K E+ ++ L     E E   
Sbjct: 536 IYPPIKKSSKVGDIL-PGLGEIVDKEHKRLLARKSIIEKRKEEQERQLLEL---EREEES 591

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILL----IQLEGAQALLDEEAEKCSSSKK--- 111
              QQ+K  EEAEQKRLAAE E RKNQRIL      +LE AQALL++  ++         
Sbjct: 592 RRLQQQKKREEAEQKRLAAEIEQRKNQRILQEIEQRELEEAQALLEDVDKRSKRKGGKKP 651

Query: 112 -----KEAKKPIMD----QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQR 162
                K  K+ IM+    +QLRERQEM+KKL+KLAKT++YLERA REEA PLIEAAFQ+R
Sbjct: 652 ILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQRR 711

Query: 163 LEEERVLHEIEQQQEVELSRERHDEDLKE 191
           L EE+VLHE EQQ E ELSR+RHD DL+E
Sbjct: 712 LVEEKVLHESEQQLETELSRQRHDGDLRE 740

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123680|ref|XP_002330181.1| predicted protein [Populus trichocarpa] gi|222871637|gb|EEF08768.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 148/209 (70%), Gaps = 22/209 (10%)

Query: 1   MYP--RSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58
           +YP  + +SK+GE+L  GLGE+VDKEH+RL+ARKSIIEK K EE +RQL+EME   E   
Sbjct: 536 IYPPTKKSSKLGEIL-PGLGEIVDKEHKRLLARKSIIEKRK-EEQERQLLEME--REEES 591

Query: 59  MLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEG----AQALLDEEAEKCSSSKK--- 111
              +Q+K  EEAEQKRLAAE+E R  QRIL    E     AQALL+E  ++         
Sbjct: 592 RRLKQQKITEEAEQKRLAAEYEQRNKQRILREIEERELEEAQALLEEHEKRSKRKGGKKP 651

Query: 112 -----KEAKKPIMD----QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQR 162
                K  K+ +M+    +QLRERQEM+KKL+KL KT++YLERA REEA PLIEAAFQQR
Sbjct: 652 ILEGEKVTKQILMERALSEQLRERQEMEKKLQKLVKTMDYLERAKREEAAPLIEAAFQQR 711

Query: 163 LEEERVLHEIEQQQEVELSRERHDEDLKE 191
           L EE+ LHE EQQQE+ELSR+RHD DL+E
Sbjct: 712 LVEEKALHEHEQQQEIELSRQRHDGDLRE 740

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2123076	987	EIF3A "AT4G11420" [Arabidopsis	0.804	0.187	0.534	3.4e-40
ZFIN|ZDB-GENE-030131-5726	1267	eif3s10 "eukaryotic translatio	0.704	0.127	0.269	3.5e-13
UNIPROTKB|E1B7R4	1378	EIF3A "Uncharacterized protein	0.704	0.117	0.272	2.3e-12
UNIPROTKB|F5H335	1348	EIF3A "Eukaryotic translation	0.704	0.120	0.272	5.5e-12
UNIPROTKB|Q14152	1382	EIF3A "Eukaryotic translation	0.704	0.117	0.272	5.9e-12
UNIPROTKB|A4II09	1391	eif3a "Eukaryotic translation	0.843	0.139	0.285	1.9e-11
MGI|MGI:95301	1344	Eif3a "eukaryotic translation	0.704	0.120	0.272	3.9e-11
UNIPROTKB|F1LRG1	1344	Eif3a "Eukaryotic translation	0.704	0.120	0.272	3.9e-11
RGD|1307269	1354	Eif3a "eukaryotic translation	0.704	0.119	0.272	3.9e-11
UNIPROTKB|E1BSS3	1365	EIF3A "Uncharacterized protein	0.739	0.124	0.295	4e-11

TAIR|locus:2123076 EIF3A "AT4G11420" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 3.4e-40, P = 3.4e-40
 Identities = 109/204 (53%), Positives = 137/204 (67%)

Query:     3 PRSASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQ 62
             P  ASK+  ++   L + V+KEH+RL+ARKSIIEK K E+ +RQ +EME EEE +R L+ 
Sbjct:   540 PSKASKLAGVIP-NLADTVEKEHKRLLARKSIIEKRK-EDQERQQLEMEREEEQKR-LKL 596

Query:    63 QKKTAEEAEQKRLAAEFELRKNQRILLI----QLEGAQALLDXXXXXXXXX--------- 109
             QK T EEAEQKRLAAE   R+ QRIL      +LE AQALL+                  
Sbjct:   597 QKLT-EEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGE 655

Query:   110 --XXXXXXXPIMDQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEER 167
                        + +QL+ERQEM+KKL+KLAKT++YLERA REEA PLIEAA+Q+RL EER
Sbjct:   656 KVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEER 715

Query:   168 VLHEIEQQQEVELSRERHDEDLKE 191
               +E EQQ+EVELS+ERH+ DLKE
Sbjct:   716 EFYEREQQREVELSKERHESDLKE 739

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-5726 eif3s10 "eukaryotic translation initiation factor 3, subunit 10 (theta)" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 48/178 (26%), Positives = 95/178 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV-ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI+ A++++  ++  L E+++++ +  +  ER
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRIKDMELWELQEEERITNMKMER 740

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1B7R4 EIF3A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIKDMDLWEQQEEERITTMQLEREK 742

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001732 "formation of translation initiation complex" evidence=IEA

UNIPROTKB|F5H335 EIF3A "Eukaryotic translation initiation factor 3 subunit A" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   529 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 588

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   589 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 648

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   649 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIKDMDLWEQQEEERITTMQLEREK 708

GO:0001732 "formation of translation initiation complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q14152 EIF3A "Eukaryotic translation initiation factor 3 subunit A" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIKDMDLWEQQEEERITTMQLEREK 742

GO:0005198 "structural molecule activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0001732 "formation of translation initiation complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|A4II09 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 171 (65.3 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 61/214 (28%), Positives = 109/214 (50%)

Query:    23 KEHERLVARKSIIEKLK--LEEH--KRQLIEMEWEEESRRMLRQQ-----KKTAEEAEQK 73
             KEH+R++AR+  IE+ K  LE    +R+  EME +E   + +R+      ++ A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLENLNIQREKEEMEQKEAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIENLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVE---LSRER 184
             E+ ++L+   K ++Y ERA R E IPL++ A++++   +  L E+++++ +    L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLLKKAYEEQRINDMELWELQEEERISTLLLEREK 742

Query:   185 HDEDLKESIGFQEAKSVRARSKTTAQKTNSLGEA 218
               E         E K +   SK  A +  SL EA
Sbjct:   743 AVEHKNRMSRMVEDKELFV-SKLKASR-QSLYEA 774

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

MGI|MGI:95301 Eif3a "eukaryotic translation initiation factor 3, subunit A" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRVKDMDLWEQQEEERITTMQLEREK 742

GO:0001732 "formation of translation initiation complex" evidence=ISO;IDA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|F1LRG1 Eif3a "Eukaryotic translation initiation factor 3 subunit A" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRVKDMDLWEQQEEERITTMQLEREK 742

GO:0001732 "formation of translation initiation complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

RGD|1307269 Eif3a "eukaryotic translation initiation factor 3, subunit A" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 49/180 (27%), Positives = 97/180 (53%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEV---ELSRER 184
             E+ ++L+   K ++Y ERA R E IPLI++A++++  ++  L E ++++ +   +L RE+
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRVKDMDLWEQQEEERITTMQLEREK 742

GO:0001732 "formation of translation initiation complex" evidence=ISO;ISS

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO;ISS

UNIPROTKB|E1BSS3 EIF3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 59/200 (29%), Positives = 104/200 (52%)

Query:    23 KEHERLVARKSIIEK-------LKLEEHKRQLIEMEWEEESRRMLRQQK--KTAEEAEQK 73
             KEH+R++AR+  IE+       L ++  K +L + E E +  R   +++  + A+E E++
Sbjct:   563 KEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622

Query:    74 RLAAEFEL--RKNQRILLIQLE----GAQALLDXXXXXXXXXXXXXXXXPIMDQQLRERQ 127
             R+  E E   +K  R  L Q++    GA+A  D                  ++Q  +E++
Sbjct:   623 RILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKK 682

Query:   128 EMDKKLRKLAKTLNYLERANREEAIPLIEAAFQ-QRL---------EEERVLH-EIEQQQ 176
             E+ ++L+   K ++Y ERA R E IPLI+ A++ QR+         EEER+   ++E+++
Sbjct:   683 ELQERLKNQEKKIDYFERAKRLEEIPLIKTAYEEQRVRDMELWEQQEEERITTLQLEREK 742

Query:   177 EVE----LSRERHDEDLKES 192
              +E    LSR   D DL E+
Sbjct:   743 ALEHKNRLSRMLEDRDLFEA 762

GO:0001732 "formation of translation initiation complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG2072	988	consensus Translation initiation factor 3, subunit	100.0
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.73

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-34  Score=286.68  Aligned_cols=204  Identities=32%  Similarity=0.421  Sum_probs=186.2

Q ss_pred             hhhHHHHhhhhhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038326            6 ASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQ   85 (230)
Q Consensus         6 ~~~r~~~l~~~~~~~~~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r~~~~~~~~~~~aEq~RL~eE~~rRe~e   85 (230)
                      .+....++. +|..++..||++|++|+++||.|| +.+|+++.+++.+++..+..++...  ++||++||.+|..+|+.+
T Consensus       545 ~~~~~~~v~-~~~~~v~~E~krilaRk~liE~rK-e~~E~~~~~re~Eea~~q~~e~~~~--r~aE~kRl~ee~~Ere~~  620 (988)
T KOG2072|consen  545 AKKKEGAVT-NYLKNVDKEHKRILARKSLIEKRK-EDLEKQNVEREAEEAQEQAKEQRQA--REAEEKRLIEEKKEREAK  620 (988)
T ss_pred             HHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            677888999 999999999999999999999999 9999999999999999995555444  999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchh-ccccc--CcChH---------------HHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 038326           86 RILLIQLEGAQALLDEEAEKCSSS-KKKEA--KKPIM---------------DQQLRERQEMDKKLRKLAKTLNYLERAN  147 (230)
Q Consensus        86 R~~rE~~~e~kk~~~e~l~k~~~s-~G~k~--~~d~~---------------eql~KeKkEl~~KLk~~~KklDhlERA~  147 (230)
                      |+.+|......+.+.+++..++++ +|.|+  ++|++               ++++|+++||+.||+.++|+|||||||+
T Consensus       621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~  700 (988)
T KOG2072|consen  621 RILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK  700 (988)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            999997777777777767666665 67665  33333               4999999999999999999999999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhhhhhhhHHHhHHHHhhhc
Q 038326          148 REEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKTN  213 (230)
Q Consensus       148 R~EEiPLLek~~e~q~~~D~~~~e~~~~~~ie~ak~ehe~~l~~K~RL~r~~~d~~~~~~~~~~~~  213 (230)
                      |+|||||++++|..+++.|+++|+.+++.+|..++.+|+.+|++++||++|++|+..|+..|..++
T Consensus       701 R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~r  766 (988)
T KOG2072|consen  701 RLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGER  766 (988)
T ss_pred             HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999998775

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.73  E-value=47  Score=35.30  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=20.4

Q ss_pred             hhHHHHhhhhhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038326            7 SKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR   58 (230)
Q Consensus         7 ~~r~~~l~~~~~~~~~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r   58 (230)
                      ++|...|. .=...+++-++.+++     +.|| |.-+..+.++++++...|
T Consensus       316 DKrkeNy~-kGqaELerRRq~lee-----qqqr-eree~eqkEreE~ekker  360 (1118)
T KOG1029|consen  316 DKRKENYE-KGQAELERRRQALEE-----QQQR-EREEVEQKEREEEEKKER  360 (1118)
T ss_pred             hhhHHhHh-hhhHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHH
Confidence            55555555 334444433333332     2344 544445555555444444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 37/279 (13%), Positives = 81/279 (29%), Gaps = 78/279 (27%)

Query: 3   PRSASKVGEMLSAGLGEVVDKEHERL------------VARKSIIEKLKLEEHKR----- 45
           PR          + + E +                      +S +  L+  E+++     
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 46  -----------QLIEMEW----EEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLI 90
                       L+ + W    + +   ++        +  +  L  +        I  I
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVV-------NKLHKYSLVEKQPKESTISIPSI 431

Query: 91  QLEGAQALLDEEA------EKCSSSKKKEAK---KPIMDQ----------QLRERQEMDK 131
            LE    L +E A      +  +  K  ++     P +DQ          +  E  E   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 132 KLRKLAKTLNYLERANREEAIPLIEAAFQ----QRLEE------------ERVLHEIE-- 173
             R +     +LE+  R ++     +       Q+L+             ER+++ I   
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 174 -QQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQK 211
             + E  L   ++  DL       E +++   +    Q+
Sbjct: 552 LPKIEENLICSKY-TDLLRIALMAEDEAIFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 28/171 (16%), Positives = 69/171 (40%), Gaps = 9/171 (5%)

Query: 19   EVVDKEHERLVARKSIIEKL--KLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLA 76
              V++  +  +  ++ I +L  K++E  ++   +  +  +  +    +     ++ +RL 
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973

Query: 77   AEFELRKNQRILLIQLEGAQALLDEEAEKCSSSKKK-EAKKPIMDQQLRERQ-EMDKKLR 134
               E  KN    ++ L+   A L +E  +  + KK  E        +  +   E+ ++  
Sbjct: 974  MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033

Query: 135  KLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERH 185
             L      L R   ++A  + E   ++ +EE + L     + ++   R R+
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL-----ELDLNDERLRY 1079

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 26/175 (14%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 26   ERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQ 85
              L   +   E    +E  ++  E + + E+     +QK T    E+  L  +  L+   
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK--LQAET 905

Query: 86   RILLIQLEGAQALLDEEAEKCSSSKKKEAKKPIMDQQLRERQEMDKKLRKLAKTLNYLER 145
             +     E    L  ++ E      + EA+   ++++    Q++  + +K+ + +  LE 
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEAR---IEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 146  ANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKS 200
               EE     +   ++   + ++    + + ++ +  +++++  KE    +E  S
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIK---KMEDDILIMEDQNNKLTKERKLLEERVS 1014

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 27/175 (15%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 23   KEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFE-- 80
            ++H +L   K+++++ KL+       E E         +Q+ +      + R+  E E  
Sbjct: 885  QKHTQLCEEKNLLQE-KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943

Query: 81   --LRKNQRILLIQLEGAQALLDEEAEKCSSSKK-KEAKKPIMDQQLRERQEMDKKLRKLA 137
              L+  ++ +  Q+   +  L+EE       +  K      + +   +   M+ +  KL 
Sbjct: 944  QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003

Query: 138  KTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQ-QEVELSRERHDEDLKE 191
            K    LE     +    +    ++     ++ ++ E    E+E+  ++ ++  +E
Sbjct: 1004 KERKLLEERV-SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	97.04

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=97.04  E-value=0.015  Score=46.10  Aligned_cols=35  Identities=9%  Similarity=0.130  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchh
Q 038326          120 DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPL  154 (230)
Q Consensus       120 eql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPL  154 (230)
                      .+..+.+++|+..|+.+.+.||+||++.++.+-.|
T Consensus        78 k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~gn~  112 (119)
T 3etw_A           78 SKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNL  112 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            59999999999999999999999999999988655

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00