Citrus Sinensis ID: 038330

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSSTCFSLIRYYGRASFL
ccccEEEEEcEEEccccEEEEcccccccccccccccccEEEEEEEEccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEcEEEccccEEEEEEcccccccccccccccccEEEcEEEEEEEEEcccEEEEEEEcccccEEcEEEEEEEEEEEccccccEEEEEEEEEEccEEccccccccccccccccEEEcccccccccccc
ccccEEEEEEEEEEcccEEEEEccccHccEEEccccccEEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEcccccccccccccccccEEEEEEEEEEEEcEEEEEEEEEcccccccccEEEEEEEEEEcccccccEEEccEEEEEccccccccHHccccccccccccccccccHHHHHHc
ssdnvcieDCIIAMGhdaislksgwdeygiaygrpttdVHIRRVLLqsssgssvafgsemsggisnvQVEKIHLydslngiefrttkgrggyikQIVISDAELYNINVafgacgncgshpdddfdpdalpaidqitfkdiigtnitiagnftgiqeapfaniclsnisllinpgsynswecsnihgssesvfpepcpelensssnsssTCFSLIRYYGRASFL
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIefrttkgrggYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCPELensssnssstcfSLIRYYGRASFL
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQsssgssvafgsemsGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHpdddfdpdalpaidQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCPELEnsssnsssTCFSLIRYYGRASFL
****VCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQ**************GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNI*************************CFSLIRYYG*****
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEP***************FSLIRYYG*****
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIH************************CFSLIRYYGRASFL
**DNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSSTCFSLIRYYGRASFL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSSTCFSLIRYYGRASFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.941 0.427 0.412 3e-44
Q9LW07456 Probable polygalacturonas no no 0.892 0.436 0.251 6e-07
P27644312 Polygalacturonase OS=Rhiz yes no 0.704 0.503 0.292 7e-07
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.766 0.332 0.248 0.0006
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.681 0.346 0.235 0.0006
P05117457 Polygalacturonase-2 OS=So N/A no 0.807 0.393 0.24 0.0008
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 121/211 (57%), Gaps = 1/211 (0%)

Query: 1   SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 60
           S  N  IEDC I  G D +++KSGWDEYGIAYG PT  + IRR+   S   + +A GSEM
Sbjct: 256 SCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEM 315

Query: 61  SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHP 120
           SGGI +V+ E I   +S +GI  +T  GRGGY+K I +    +  +  AF   GN GSH 
Sbjct: 316 SGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHA 375

Query: 121 DDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISL-LINPGSYNSW 179
           D+ +DP A P I  I ++D++  N+++A    GI   PF  IC+SN+++ L        W
Sbjct: 376 DNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPW 435

Query: 180 ECSNIHGSSESVFPEPCPELENSSSNSSSTC 210
            C+++ G S  V P PC  L +     +S C
Sbjct: 436 TCTDVEGISSGVTPTPCSTLPDQGPEKTSLC 466

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
356529330 452 PREDICTED: probable polygalacturonase-li 0.995 0.491 0.680 2e-84
224130360 450 predicted protein [Populus trichocarpa] 0.964 0.477 0.687 7e-84
356558153 579 PREDICTED: probable polygalacturonase-li 0.986 0.379 0.681 9e-84
255551873 454 Polygalacturonase, putative [Ricinus com 0.991 0.486 0.675 3e-82
359477236275 PREDICTED: probable polygalacturonase-li 0.883 0.716 0.736 2e-81
225431820 457 PREDICTED: probable polygalacturonase-li 0.883 0.431 0.736 4e-81
224107034 435 predicted protein [Populus trichocarpa] 0.914 0.468 0.712 4e-81
296083315 482 unnamed protein product [Vitis vinifera] 0.883 0.408 0.736 5e-81
356564613 460 PREDICTED: probable polygalacturonase-li 0.977 0.473 0.641 3e-80
357478841 459 hypothetical protein MTR_4g120730 [Medic 0.977 0.474 0.666 7e-80
>gi|356529330|ref|XP_003533248.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 181/222 (81%)

Query: 1   SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 60
           SSDNVCIEDCI+AMG DAISLKSGWDEYGIAYGRPT +VHIRRV L + SGS++AFGS+M
Sbjct: 230 SSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVQLHAFSGSALAFGSDM 289

Query: 61  SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHP 120
           SGGISNV VE  HL++S +GIEFRTTKGRGGY+K+IV+SD ++ N++ A  A GNCGSHP
Sbjct: 290 SGGISNVLVEHAHLFNSNSGIEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHP 349

Query: 121 DDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWE 180
           DD FDP+ALP +D IT KD+IGTNITIAGN  GI E+PF NICLSNI+L  N  S  +W 
Sbjct: 350 DDKFDPNALPHLDHITLKDVIGTNITIAGNLAGIDESPFTNICLSNITLSTNSVSPITWA 409

Query: 181 CSNIHGSSESVFPEPCPELENSSSNSSSTCFSLIRYYGRASF 222
           CSN+ G S+SV PEPCPEL N+S +SSS+CF L+   G+ + 
Sbjct: 410 CSNVSGFSDSVLPEPCPELGNTSYDSSSSCFYLLSVSGKTAL 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130360|ref|XP_002328589.1| predicted protein [Populus trichocarpa] gi|222838571|gb|EEE76936.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558153|ref|XP_003547372.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|255551873|ref|XP_002516982.1| Polygalacturonase, putative [Ricinus communis] gi|223544070|gb|EEF45596.1| Polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359477236|ref|XP_003631950.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431820|ref|XP_002273305.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107034|ref|XP_002314352.1| predicted protein [Populus trichocarpa] gi|222863392|gb|EEF00523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296083315|emb|CBI22951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564613|ref|XP_003550546.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|357478841|ref|XP_003609706.1| hypothetical protein MTR_4g120730 [Medicago truncatula] gi|355510761|gb|AES91903.1| hypothetical protein MTR_4g120730 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2083383446 AT3G06770 [Arabidopsis thalian 0.896 0.448 0.515 2.5e-49
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.883 0.432 0.487 2e-47
TAIR|locus:504954979449 AT5G49215 [Arabidopsis thalian 0.950 0.472 0.475 6.2e-46
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.955 0.452 0.379 1.9e-37
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.874 0.434 0.402 2.4e-35
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.887 0.445 0.391 3.6e-34
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.887 0.416 0.341 5.4e-31
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.896 0.420 0.333 1.8e-30
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.878 0.417 0.329 4.9e-30
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.878 0.395 0.324 5.6e-29
TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 103/200 (51%), Positives = 131/200 (65%)

Query:     1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQXXXXXXXXXXXXX 60
             SSD VCI++  I +G+DAISLKSGWDEYGIAY RPT +VHIR V L+             
Sbjct:   236 SSDYVCIQNSTINVGYDAISLKSGWDEYGIAYSRPTENVHIRNVYLRGASGSSISFGSEM 295

Query:    61 XGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHX 120
              GGIS+V V+  H++ SL GI FRTTKGRGGYIK+I IS+ ++  I  A  A G+ GSH 
Sbjct:   296 SGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIVANGSFGSHP 355

Query:   121 XXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWE 180
                           I   +I G NI IAG   GI+E+PF+++ LSN+SL ++ GS  SW+
Sbjct:   356 DDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSWQ 415

Query:   181 CSNIHGSSESVFPEPCPELE 200
             CS ++GSSESV PEPCPEL+
Sbjct:   416 CSYVYGSSESVIPEPCPELK 435
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-16
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 6e-09
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-05
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 5e-04
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 47/174 (27%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 1   SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 60
           S  NV IE C    G D I++KSG    G     P+ ++ IR     S  G  V  GSEM
Sbjct: 294 SCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLV-LGSEM 352

Query: 61  SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISD------AELYNINVAFGACG 114
            GG+ N+ VE   + ++  G+  +T  GRGG ++ IV  D          +IN       
Sbjct: 353 GGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSINKGQITFS 412

Query: 115 NCGSHPDDDFDPDALPAIDQITFKDIIGTNITI---------AGNFTGIQEAPF 159
                   DF     P+ D           +            G  TG+ E   
Sbjct: 413 IVDRGGLIDFVLSGSPSKDDKLTSKEGAQTVGGVVIRNLLATGGGTTGLDERSV 466

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.88
PLN02218431 polygalacturonase ADPG 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.81
PLN02155394 polygalacturonase 99.81
PLN02793443 Probable polygalacturonase 99.8
PLN03010409 polygalacturonase 99.8
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.33
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.65
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.04
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.97
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.66
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.49
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.45
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.24
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.06
smart00656190 Amb_all Amb_all domain. 96.83
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.75
smart00656190 Amb_all Amb_all domain. 96.51
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.49
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.47
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.14
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.03
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.27
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 92.98
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 92.49
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 92.43
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 91.03
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 85.17
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 82.77
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 81.22
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 80.55
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=296.87  Aligned_cols=191  Identities=26%  Similarity=0.434  Sum_probs=163.8

Q ss_pred             CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCC----CCEEEEEEEeeEEeC
Q 038330            1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYD   76 (223)
Q Consensus         1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~----g~v~NI~v~n~~i~~   76 (223)
                      +|+||+|+||+|.+||||||||++           ++||+|+||+|. + +|||+|||++.    +.|+||+|+||+|.+
T Consensus       195 ~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~-~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~  261 (456)
T PLN03003        195 ASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCG-P-GHGISIGSLGKDGETATVENVCVQNCNFRG  261 (456)
T ss_pred             CcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEE-C-CCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence            589999999999999999999997           899999999998 5 89999999985    459999999999999


Q ss_pred             CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCC-CCCC-CCCCCCcEEEEEEEEEEEeccc-eeEEEEe
Q 038330           77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHP-DDDF-DPDALPAIDQITFKDIIGTNIT-IAGNFTG  153 (223)
Q Consensus        77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g  153 (223)
                      +.+|+|||||++++|+|+||+|+||+|+++.+||.|+++|...+ ...+ .+...+.|+||+|+||+++... .++.|.|
T Consensus       262 T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~C  341 (456)
T PLN03003        262 TMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRC  341 (456)
T ss_pred             CCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEe
Confidence            99999999999989999999999999999999999999997422 1111 1222359999999999998654 5889999


Q ss_pred             cCCCCEEeEEEEeEEEEecC-C--CCCCceEEeeecCC-CceeCCCCCCCCCCCC
Q 038330          154 IQEAPFANICLSNISLLINP-G--SYNSWECSNIHGSS-ESVFPEPCPELENSSS  204 (223)
Q Consensus       154 ~~~~~i~nI~f~NV~i~~~~-~--~~~~~~c~nv~g~~-~~~~p~~c~~~~~~~~  204 (223)
                      .++.||+||+|+||+++... +  ....|+|+||+|.. +.++|.||.++...-+
T Consensus       342 s~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~~~  396 (456)
T PLN03003        342 SERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTDMF  396 (456)
T ss_pred             CCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCCcc
Confidence            99999999999999999863 2  23579999999988 4455558998876443

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 3e-51
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-47
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-40
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-29
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-28
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 5e-28
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 3e-26
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 4e-25
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 8e-24
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-19
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-15
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-08
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-08
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 6e-07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-06
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 7e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  171 bits (434), Expect = 3e-51
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 8/189 (4%)

Query: 1   SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS-VAFGSE 59
           S   + IE C    G D++ +KSG D  G   G P+  + +R  L+ S +    +  GSE
Sbjct: 245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE 304

Query: 60  MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI-NVAFGACGNCGS 118
           MSGG+ NV        +    +  +T   RGGY++ I   D    N+            +
Sbjct: 305 MSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDN 364

Query: 119 HPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISL-LINPGSYN 177
                 + + LP +  +  K++  T    A    G++     +I +S+  +         
Sbjct: 365 E-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLL 419

Query: 178 SWECSNIHG 186
            +    +  
Sbjct: 420 EFGQLGMEN 428
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.9
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.89
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.88
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.87
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.86
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.86
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.82
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.8
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.8
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.73
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.73
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.72
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.69
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.64
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.63
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.61
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.48
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.46
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.29
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.18
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.62
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.54
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.19
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.98
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.92
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.9
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.8
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.71
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.52
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.47
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 96.2
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.2
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.19
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.1
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 95.81
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.67
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.56
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.48
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.4
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.38
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.33
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.2
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 95.06
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.04
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 94.85
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.52
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 93.01
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 89.85
2inu_A 410 Insulin fructotransferase; right-handed parallel b 88.93
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 88.82
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 88.14
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 86.54
2inu_A410 Insulin fructotransferase; right-handed parallel b 85.43
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 85.35
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 83.47
2xc1_A666 Bifunctional tail protein; hydrolase, endoglycosid 81.76
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2e-37  Score=283.78  Aligned_cols=175  Identities=24%  Similarity=0.348  Sum_probs=157.0

Q ss_pred             CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCC-CeEEEccCCCCCEEEEEEEeeEEeCCCc
Q 038330            1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG-SSVAFGSEMSGGISNVQVEKIHLYDSLN   79 (223)
Q Consensus         1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~-~gi~IGSe~~g~v~NI~v~n~~i~~~~~   79 (223)
                      +|+||+|+||+|.+|||||+||++++.+|+++..|++||+|+||+|++..+ +||+||||+.++++||+|+||+|.++.+
T Consensus       245 ~s~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~  324 (448)
T 3jur_A          245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVER  324 (448)
T ss_dssp             SCEEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSE
T ss_pred             CCcCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccc
Confidence            589999999999999999999999999999999999999999999954324 4999999999999999999999999999


Q ss_pred             eEEEEEecCCCceEEEEEEEeEEEEecCeee-EEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecCCCC
Q 038330           80 GIEFRTTKGRGGYIKQIVISDAELYNINVAF-GACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAP  158 (223)
Q Consensus        80 gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~  158 (223)
                      |++|||+.+++|.|+||+|+||+|+++.+|+ .|+++|...     ..+..+.|+||+|+||+++....++.|.|.++.|
T Consensus       325 GirIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p  399 (448)
T 3jur_A          325 ALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDY  399 (448)
T ss_dssp             EEEEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBC
T ss_pred             eEEEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCC
Confidence            9999999999999999999999999999988 999998753     1223469999999999999877899999999999


Q ss_pred             EEeEEEEeEEEEecCCCCCCceEEe
Q 038330          159 FANICLSNISLLINPGSYNSWECSN  183 (223)
Q Consensus       159 i~nI~f~NV~i~~~~~~~~~~~c~n  183 (223)
                      |+||+|+||++++...   ...|.+
T Consensus       400 ~~~I~~~nv~i~~~~~---~~~~~~  421 (448)
T 3jur_A          400 VKDILISDTIIEGAKI---SVLLEF  421 (448)
T ss_dssp             EEEEEEEEEEEESCSE---EEEEEE
T ss_pred             EeeEEEEEEEEEcccc---ceeEec
Confidence            9999999999997642   345555
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-22
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 1e-20
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-19
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 4e-18
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-17
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-15
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-12
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 4e-11
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

 Score = 90.1 bits (223), Expect = 4e-22
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 17/191 (8%)

Query: 1   SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSE 59
           +S  V I    +    D +++ SG +            +           G S+ + G  
Sbjct: 159 NSVGVNIIKPWVHNQDDCLAVNSGEN------------IWFTGGTCIGGHGLSIGSVGDR 206

Query: 60  MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSH 119
            +  + NV +E   + +S N +  +T  G  G + +I  S+  +  I+            
Sbjct: 207 SNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYED 266

Query: 120 PDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLLINPGSYNS 178
                 P     I  +  + + G+  +     +        ++    ++ +    G   S
Sbjct: 267 GKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKV---TGGKKS 323

Query: 179 WECSNIHGSSE 189
             C N    + 
Sbjct: 324 TACKNFPSVAS 334
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.97
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.84
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.81
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.77
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.76
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.74
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.41
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.07
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.56
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 95.27
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.18
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.93
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.82
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.59
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.01
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 93.24
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 93.22
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.88
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 92.74
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 91.14
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 90.14
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 88.06
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 80.14
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=2.1e-34  Score=253.25  Aligned_cols=166  Identities=15%  Similarity=0.255  Sum_probs=143.2

Q ss_pred             CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEE---ccCCCCCEEEEEEEeeEEeCC
Q 038330            1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF---GSEMSGGISNVQVEKIHLYDS   77 (223)
Q Consensus         1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~I---GSe~~g~v~NI~v~n~~i~~~   77 (223)
                      +|+||+|+||+|.++||||++|+            .+||+|+||+|. . +||++|   |+++.+.|+||+|+||+|.++
T Consensus       165 ~s~nV~I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~-~-ghG~sigslG~~~~~~v~nV~v~n~~~~~t  230 (339)
T d1ia5a_         165 TSTYVTISGATVYNQDDCVAVNS------------GENIYFSGGYCS-G-GHGLSIGSVGGRSDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             SCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEE-S-SSCEEEEEECSSSCCEEEEEEEEEEEEESC
T ss_pred             CCCeEEEeeeEEEcCCCeEEecC------------ccEEEEEEeEEe-c-cccceecccccCccccEEEEEEECCcccCC
Confidence            58999999999999999999997            489999999999 4 788765   667778999999999999999


Q ss_pred             CceEEEEEecCCCceEEEEEEEeEEEEec-CeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEecC
Q 038330           78 LNGIEFRTTKGRGGYIKQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQ  155 (223)
Q Consensus        78 ~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~  155 (223)
                      .+|+||||+.+++|.|+||+|+||+|+++ ++||.|+++|.....  .++++ ..|+||+|+||+++... .+..+.|.+
T Consensus       231 ~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~--~~~~~-v~i~nI~~~Ni~gt~~~~~~~~~~~~~  307 (339)
T d1ia5a_         231 DNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS--TPTTG-VPITDFVLDNVHGSVVSSGTNILISCG  307 (339)
T ss_dssp             SEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS--CCCSS-SCEEEEEEEEEEEEECTTSEEEEEECC
T ss_pred             cceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCC--CCCCC-cEEEeEEEEeEEEEecccCceEEEeCC
Confidence            99999999999999999999999999998 579999999965322  22333 47999999999998765 467788889


Q ss_pred             CCCEEeEEEEeEEEEecCCCCCCceEEeeec
Q 038330          156 EAPFANICLSNISLLINPGSYNSWECSNIHG  186 (223)
Q Consensus       156 ~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g  186 (223)
                      +.||+||+|+||++++..   ..+.|.||++
T Consensus       308 ~~p~~ni~~~nV~itg~~---~~~~C~nv~~  335 (339)
T d1ia5a_         308 SGSCSDWTWTDVSVSGGK---TSSKCTNVPS  335 (339)
T ss_dssp             TTCEEEEEEEEEEEESSB---CCSCCBSCCT
T ss_pred             CCCEeceEEEeEEEcCCC---cceEeECCCc
Confidence            999999999999998643   4577888875
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure