Citrus Sinensis ID: 038359

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdsfrgqggIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRisetsgssesTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Flexible Loop (DISEMBL)
MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLykshleteyqkrisetsgssestvkRLEEeteikikqlkdsalkvskevTDLLIKYITTIKN
Low Complexity Region (SEG)
MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Disordered region (IsUnstruct)
******************************************************************************************LKVSKEVTDLLIKYITTI**
Disordered Region (DISOPRED)
************LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETE****************************************VTDLLIKYITTIKN
Disordered Region (DISEMBL)
********GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETE*******************EEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Disordered Region (DISPRO)
*******GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE******STVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKxxxxxxxxxxxxxxxxxxxxxLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9SP55	110	V-type proton ATPase subu	N/A	no	1.0	1.0	0.572	1e-31
Q9SZH0	108	V-type proton ATPase subu	yes	no	0.954	0.972	0.607	8e-30
O82628	110	V-type proton ATPase subu	no	no	1.0	1.0	0.590	9e-27
O82629	106	V-type proton ATPase subu	no	no	0.936	0.971	0.543	5e-25
O82702	110	V-type proton ATPase subu	N/A	no	1.0	1.0	0.545	2e-24
O82703	111	V-type proton ATPase subu	N/A	no	1.0	0.990	0.531	2e-22
Q54Z13	107	V-type proton ATPase subu	yes	no	0.954	0.981	0.352	3e-09
Q9CR51	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.376	2e-08
O75348	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.376	2e-08
P79251	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.376	5e-08

>sp|Q9SP55|VATG_CITLI V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 87/110 (79%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           M S RGQGGIQ LL AEQEAQHIV++ARN KMARLKQAK+EAE+E+  Y++ +E E+Q++
Sbjct: 1   MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           ++E+ G S + VKRLE+ETE+KI  LK  A K+  +V  + +K++TT+KN
Sbjct: 61  LAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus limon (taxid: 2708)

>sp|Q9SZH0|VATG3_ARATH V-type proton ATPase subunit G3 OS=Arabidopsis thaliana GN=VHA-G3 PE=3 SV=1

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 2/107 (1%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS RGQGGIQMLL AEQEA  IVS+AR  K+AR+KQAKDEAEKE+  Y+S LE EYQ +
Sbjct: 1   MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITT 107
           +S T    E+  KRL++ET+++I  LK+S+ KVSK++  +LIKY+TT
Sbjct: 61  VSGT--DQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O82628|VAGT1_ARATH V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 90/110 (81%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           M+S RGQG IQ LL AE EAQHIV++AR  KMARLKQAK+EAEKE+  YK+  E ++Q++
Sbjct: 1   MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           + ETSG S + VKRLE+ET+ KI+QLK+ A ++SK+V ++L+K++TT+KN
Sbjct: 61  LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O82629|VATG2_ARATH V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=3 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 78/103 (75%)

Query: 8   GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGS 67
            GIQ LL AE+EAQ IV++AR  KM RLKQAK+EAE EV  +K+  E  +Q+++  TSG 
Sbjct: 4   AGIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGD 63

Query: 68  SESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           S + VKRLE+ET+ KI+QLK+ A ++SK+V D+L+K +TT+ N
Sbjct: 64  SGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O82702|VATG1_TOBAC V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 87/110 (79%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           M S  GQ GIQ+LL AEQEAQHIV++AR  K ARLKQAK+EAEKE+  +++++E E+Q++
Sbjct: 1   MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           + +TSG S + VKRLE+ET+ KI+ LK  A +VS +V  +L++++TT+KN
Sbjct: 61  LEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|O82703|VATG2_TOBAC V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1   MDSFRG-QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK 59
           M+S RG Q GIQ+LL AEQEAQHIV++AR  K AR+KQAK+EAEKE+  +++++E E+Q+
Sbjct: 1   MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQR 60

Query: 60  RISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
            + +TSG S + VKRLE+ET  KI+ LK  A  +S +V  +L++ +TT+KN
Sbjct: 61  NVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|Q54Z13|VATG_DICDI V-type proton ATPase subunit G OS=Dictyostelium discoideum GN=atp6v1g PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 62/105 (59%)

Query: 6   GQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS 65
            + GI+ LL+AE+ AQ IV+ AR  ++ +LK+A +EAEKE+  ++   + EY++  S+  
Sbjct: 3   SEDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKKDKEYKEYESKYL 62

Query: 66  GSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           G+S  T  +L      +I  +++      ++V DLLIKY  T  N
Sbjct: 63  GASSETASQLATNANKEIDTIRNETAANKQKVVDLLIKYAITCDN 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CR51|VATG1_MOUSE V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=2 SV=3

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query: 9   GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
           GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSH 66

Query: 69  ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
            S    +E+ET  K+  L++   +   EV D L+ ++  I+
Sbjct: 67  GSCSSEVEKETREKMTVLQNYFEQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|O75348|VATG1_HUMAN V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query: 9   GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
           GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSR 66

Query: 69  ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
            S    +E+ET+ K+  L+    +   EV D L+ ++  I+
Sbjct: 67  GSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|P79251|VATG1_BOVIN V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query: 9   GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
           GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ EV  Y+   E E++ + +   GS 
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEVEQYRLQREKEFKAKEAAALGSH 66

Query: 69  ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
            S    +E++T+ K+  L+    +   EV D L+ ++  I+
Sbjct: 67  GSCSTEVEKDTQEKMTILQTYFQQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
255561640	108	vacuolar ATP synthase subunit G plant, p	0.981	1.0	0.722	9e-39
356529965	110	PREDICTED: LOW QUALITY PROTEIN: V-type p	0.990	0.990	0.706	5e-36
356568602	110	PREDICTED: V-type proton ATPase subunit	0.990	0.990	0.697	6e-36
449450560	108	PREDICTED: V-type proton ATPase subunit	0.972	0.990	0.623	1e-33
148908277	110	unknown [Picea sitchensis]	1.0	1.0	0.636	1e-33
225460567	110	PREDICTED: V-type proton ATPase subunit	0.990	0.990	0.642	3e-33
302125459	126	unnamed protein product [Vitis vinifera]	0.990	0.865	0.642	4e-33
225460554	110	PREDICTED: V-type proton ATPase subunit	0.990	0.990	0.651	5e-33
116784193	110	unknown [Picea sitchensis]	1.0	1.0	0.627	2e-32
359493297	110	PREDICTED: V-type proton ATPase subunit	0.981	0.981	0.629	4e-32

>gi|255561640|ref|XP_002521830.1| vacuolar ATP synthase subunit G plant, putative [Ricinus communis] gi|223539043|gb|EEF40640.1| vacuolar ATP synthase subunit G plant, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 95/108 (87%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS RGQGGIQMLL AEQEAQHIVS+ARNLKM RLKQAK EAEKEV  Y+SH+E+EYQK+
Sbjct: 1   MDSMRGQGGIQMLLTAEQEAQHIVSAARNLKMTRLKQAKHEAEKEVANYRSHMESEYQKQ 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTI 108
           ++ETSG+S STVKRL+EETE+KI +LK+SA KV  +V  +L+KY+TT+
Sbjct: 61  LTETSGTSGSTVKRLDEETEVKINKLKESATKVQPDVVAMLLKYVTTV 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529965|ref|XP_003533556.1| PREDICTED: LOW QUALITY PROTEIN: V-type proton ATPase subunit G-like [Glycine max]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 87/109 (79%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MD F+GQGGIQMLL AEQEAQHIVS+ARN +  RLK AKDEAE+E T Y+SH+E EYQK 
Sbjct: 1   MDPFKGQGGIQMLLIAEQEAQHIVSNARNFRTQRLKXAKDEAEREATEYRSHIEEEYQKS 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           ISE +GSS S VKRLEEET  KIK LK S  KVS EV D+L+KY+T IK
Sbjct: 61  ISENTGSSGSNVKRLEEETNAKIKNLKKSTSKVSSEVVDMLLKYVTNIK 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568602|ref|XP_003552499.1| PREDICTED: V-type proton ATPase subunit G-like [Glycine max]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MD F+GQGGIQMLL AEQEAQHIVS+ARNL+  RLKQAKDE E+E   Y+SH+E EYQK 
Sbjct: 1   MDPFKGQGGIQMLLIAEQEAQHIVSNARNLRTQRLKQAKDEVEREAAQYRSHMEDEYQKL 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           ISE +GSS S VKRLEEET+ KIK LK S  K+S EV D+L+KY+T IK
Sbjct: 61  ISENTGSSGSNVKRLEEETDAKIKNLKKSTSKISSEVVDMLLKYVTNIK 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450560|ref|XP_004143030.1| PREDICTED: V-type proton ATPase subunit G3-like [Cucumis sativus] gi|449494523|ref|XP_004159569.1| PREDICTED: V-type proton ATPase subunit G3-like [Cucumis sativus]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 92/109 (84%), Gaps = 2/109 (1%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MD FRGQGGIQMLL AEQ+AQ +VS+ARN+KMARLKQAKDEAE+EV  Y++HLE EYQK+
Sbjct: 1   MDPFRGQGGIQMLLTAEQDAQQVVSTARNMKMARLKQAKDEAEREVAHYRAHLEAEYQKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           +SE+S  S +  +RLEEET +KI  LK+S+ +VSK+V ++L++Y+T+ +
Sbjct: 61  VSESSAGSYT--QRLEEETNVKIDNLKESSARVSKDVVNMLLQYVTSPR 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148908277|gb|ABR17253.1| unknown [Picea sitchensis]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 93/110 (84%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQ+LL AEQEAQHIV+SAR+ KMARLKQAKDEAE+E+  Y++  ETE++K+
Sbjct: 1   MDSNKGQGGIQLLLAAEQEAQHIVASARSAKMARLKQAKDEAEREIASYRAQRETEFRKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           ++ETSG S S VKRLEEET+ KI+ L++ A +VS EV  +L+KY+TT++N
Sbjct: 61  VAETSGDSGSNVKRLEEETKEKIEHLQNEASRVSPEVVAMLMKYVTTVRN 110

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460567|ref|XP_002278572.1| PREDICTED: V-type proton ATPase subunit G [Vitis vinifera]

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 93/109 (85%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQMLL AEQEA+ I+S+A+NLK+ RLKQAK+EAE+EV LY S++E  +QK+
Sbjct: 1   MDSMKGQGGIQMLLTAEQEARQIISNAKNLKLTRLKQAKEEAEREVKLYHSNMEAAHQKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           ISETSGSS S VKRL+EET ++I+ LK+SA +VS +V  +LIK++TT+K
Sbjct: 61  ISETSGSSGSNVKRLDEETAMRIQSLKESASRVSSDVVAMLIKHVTTVK 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302125459|emb|CBI35546.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 93/109 (85%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQMLL AEQEA+ I+S+A+NLK+ RLKQAK+EAE+EV LY S++E  +QK+
Sbjct: 17  MDSMKGQGGIQMLLTAEQEARQIISNAKNLKLTRLKQAKEEAEREVKLYHSNMEAAHQKK 76

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           ISETSGSS S VKRL+EET ++I+ LK+SA +VS +V  +LIK++TT+K
Sbjct: 77  ISETSGSSGSNVKRLDEETAMRIQSLKESASRVSSDVVAMLIKHVTTVK 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460554|ref|XP_002277914.1| PREDICTED: V-type proton ATPase subunit G [Vitis vinifera]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 92/109 (84%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQMLL AEQEA+ I+S+A+NLK+ RLKQAK+EAE+EV LY S++E  +QK+
Sbjct: 1   MDSMKGQGGIQMLLTAEQEARQIISNAKNLKLTRLKQAKEEAEREVKLYHSNMEAAHQKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           ISETSGSS S VKRL+EET +KI+ LK+SA +VS +V   LIK++TT+K
Sbjct: 61  ISETSGSSGSNVKRLDEETAMKIQSLKESASRVSSDVVATLIKHVTTVK 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784193|gb|ABK23252.1| unknown [Picea sitchensis]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 91/110 (82%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQ+LL AEQEAQ+IV+SAR  KMARLKQAKDEAE+E+  Y++  E E++K+
Sbjct: 1   MDSNKGQGGIQLLLAAEQEAQNIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
           +SETSG S S VKRLEEET+ KI+ L++ A +VS EV  +L+KY+TT++N
Sbjct: 61  VSETSGDSGSNVKRLEEETKTKIEHLQNVASEVSPEVVAMLMKYVTTVRN 110

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493297|ref|XP_003634562.1| PREDICTED: V-type proton ATPase subunit G-like [Vitis vinifera] gi|296081027|emb|CBI18531.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 91/108 (84%)

Query: 1   MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
           MDS +GQGGIQMLL AEQEA+ I+S+A+NLK+ RLKQAK+EAE+EV LY S++E  +QK+
Sbjct: 1   MDSMKGQGGIQMLLTAEQEARQIISNAKNLKLTRLKQAKEEAEREVKLYHSNMEAAHQKK 60

Query: 61  ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTI 108
           ISETSGSS S VKRL+EET ++I+ LK+SA +VS +V  +LIK++T +
Sbjct: 61  ISETSGSSGSNVKRLDEETAMRIQSLKESASRVSSDVVAMLIKHVTAV 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2096682	110	VMA10 "vacuolar membrane ATPas	1.0	1.0	0.590	4.2e-31
TAIR|locus:2120790	108	VATG3 "vacuolar ATP synthase G	0.954	0.972	0.607	5.6e-29
TAIR|locus:2128499	106	VAG2 "vacuolar ATP synthase su	0.927	0.962	0.549	5.9e-25
UNIPROTKB|G4MQX6	115	MGG_04716 "V-type ATPase" [Mag	0.9	0.860	0.38	5.6e-13
DICTYBASE|DDB_G0277971	107	vatG "vacuolar ATPase subunit	0.945	0.971	0.355	1.5e-12
RGD|1310088	118	Atp6v1g1 "ATPase, H transporti	0.918	0.855	0.376	2.2e-11
MGI|MGI:1913540	118	Atp6v1g1 "ATPase, H+ transport	0.918	0.855	0.376	2.8e-11
UNIPROTKB|O75348	118	ATP6V1G1 "V-type proton ATPase	0.918	0.855	0.376	3.5e-11
UNIPROTKB|P79251	118	ATP6V1G1 "V-type proton ATPase	0.918	0.855	0.376	5.8e-11
UNIPROTKB|E1C3C6	118	ATP6V1G1 "Uncharacterized prot	0.918	0.855	0.356	7.4e-11

TAIR|locus:2096682 VMA10 "vacuolar membrane ATPase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 65/110 (59%), Positives = 90/110 (81%)

Query:     1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
             M+S RGQG IQ LL AE EAQHIV++AR  KMARLKQAK+EAEKE+  YK+  E ++Q++
Sbjct:     1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query:    61 ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
             + ETSG S + VKRLE+ET+ KI+QLK+ A ++SK+V ++L+K++TT+KN
Sbjct:    61 LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0000325 "plant-type vacuole" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2120790 VATG3 "vacuolar ATP synthase G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60
             MDS RGQGGIQMLL AEQEA  IVS+AR  K+AR+KQAKDEAEKE+  Y+S LE EYQ +
Sbjct:     1 MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query:    61 ISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITT 107
             +S T    E+  KRL++ET+++I  LK+S+ KVSK++  +LIKY+TT
Sbjct:    61 VSGTD--QEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2128499 VAG2 "vacuolar ATP synthase subunit G2" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 56/102 (54%), Positives = 78/102 (76%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+EAQ IV++AR  KM RLKQAK+EAE EV  +K+  E  +Q+++  TSG S
Sbjct:     5 GIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDS 64

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
              + VKRLE+ET+ KI+QLK+ A ++SK+V D+L+K +TT+ N
Sbjct:    65 GANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|G4MQX6 MGG_04716 "V-type ATPase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 38/100 (38%), Positives = 60/100 (60%)

Query:     3 SFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62
             S +   GIQ LL AE+EA  IV  AR  +  R+K+A+DEA+KE+  YK+  E EY+   S
Sbjct:     2 SAQSSAGIQTLLEAEREASKIVQKAREFRTKRVKEARDEAKKEIEAYKAEKEGEYKAFES 61

Query:    63 ETSGSSESTVKRLEEETEIKIKQLKDSALK-VSKEVTDLL 101
             + +  ++   +   +E E +IK++K++  K   K + DLL
Sbjct:    62 KHTQGNKQAEEEANKEAETEIKEIKEAGKKHQDKVIKDLL 101

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0277971 vatG "vacuolar ATPase subunit G" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/104 (35%), Positives = 62/104 (59%)

Query:     7 QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSG 66
             + GI+ LL+AE+ AQ IV+ AR  ++ +LK+A +EAEKE+  ++   + EY++  S+  G
Sbjct:     4 EDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKKDKEYKEYESKYLG 63

Query:    67 SSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIKN 110
             +S  T  +L      +I  +++      ++V DLLIKY  T  N
Sbjct:    64 ASSETASQLATNANKEIDTIRNETAANKQKVVDLLIKYAITCDN 107

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0007035 "vacuolar acidification" evidence=ISS

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1310088 Atp6v1g1 "ATPase, H transporting, lysosomal V1 subunit G1" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 38/101 (37%), Positives = 58/101 (57%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct:     7 GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSH 66

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
              S    +E+ET+ K+  L++   +   EV D L+ ++  I+
Sbjct:    67 GSCSSEVEKETQEKMTILQNYFEQNRDEVLDNLLAFVCDIR 107

GO:0005622 "intracellular" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISO

GO:0015992 "proton transport" evidence=IEA;ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA;ISO

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0051117 "ATPase binding" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=ISO

MGI|MGI:1913540 Atp6v1g1 "ATPase, H+ transporting, lysosomal V1 subunit G1" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct:     7 GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSH 66

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
              S    +E+ET  K+  L++   +   EV D L+ ++  I+
Sbjct:    67 GSCSSEVEKETREKMTVLQNYFEQNRDEVLDNLLAFVCDIR 107

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IPI

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0051117 "ATPase binding" evidence=ISO

UNIPROTKB|O75348 ATP6V1G1 "V-type proton ATPase subunit G 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct:     7 GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSR 66

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
              S    +E+ET+ K+  L+    +   EV D L+ ++  I+
Sbjct:    67 GSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIR 107

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0051117 "ATPase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|P79251 ATP6V1G1 "V-type proton ATPase subunit G 1" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+ A   VS AR  K  RLKQAK+EA+ EV  Y+   E E++ + +   GS 
Sbjct:     7 GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEVEQYRLQREKEFKAKEAAALGSH 66

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
              S    +E++T+ K+  L+    +   EV D L+ ++  I+
Sbjct:    67 GSCSTEVEKDTQEKMTILQTYFQQNRDEVLDNLLAFVCDIR 107

GO:0005886 "plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0051117 "ATPase binding" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

UNIPROTKB|E1C3C6 ATP6V1G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 36/101 (35%), Positives = 56/101 (55%)

Query:     9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
             GIQ LL AE+ A   V+ AR  K  RLKQAK+EA+ E+  Y+   E E++ + +   GS 
Sbjct:     7 GIQQLLQAEKRAAEKVAEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSH 66

Query:    69 ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
              S    +E+ET+ K+  ++ +  K  + V   L+  +  IK
Sbjct:    67 GSCTTEVEKETQEKMSVIQQNFQKNREVVLSQLLSLVCDIK 107

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SP55	VATG_CITLI	No assigned EC number	0.5727	1.0	1.0	N/A	no
Q9SZH0	VATG3_ARATH	No assigned EC number	0.6074	0.9545	0.9722	yes	no
O75348	VATG1_HUMAN	No assigned EC number	0.3762	0.9181	0.8559	yes	no
Q54Z13	VATG_DICDI	No assigned EC number	0.3523	0.9545	0.9813	yes	no
P91303	VATG_CAEEL	No assigned EC number	0.3465	0.9181	0.8015	yes	no
P79251	VATG1_BOVIN	No assigned EC number	0.3762	0.9181	0.8559	yes	no
O82702	VATG1_TOBAC	No assigned EC number	0.5454	1.0	1.0	N/A	no
O82703	VATG2_TOBAC	No assigned EC number	0.5315	1.0	0.9909	N/A	no
Q9XZH6	VATG_DROME	No assigned EC number	0.3267	0.9	0.8461	yes	no
Q5WR09	VATG1_CANFA	No assigned EC number	0.3366	0.9181	0.8559	yes	no
Q9CR51	VATG1_MOUSE	No assigned EC number	0.3762	0.9181	0.8559	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam03179	105	pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subu	8e-28
TIGR01147	113	TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, su	2e-13

>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit

 Score = 97.3 bits (243), Expect = 8e-28
 Identities = 46/105 (43%), Positives = 66/105 (62%)

Query: 5   RGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET 64
               GIQ LL AE+EA  IV+ AR  +  RLKQAK+EAEKE+  Y++  E E+++  +E 
Sbjct: 1   SQSQGIQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEH 60

Query: 65  SGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
           SGS     K++E+ETE KI +LK S  K  + V  +L+  +T +K
Sbjct: 61  SGSRGELEKKIEKETEEKIDELKRSFNKNKEAVVQMLLSKVTDVK 105

This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Length = 105

>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G

 Score = 60.6 bits (147), Expect = 2e-13
 Identities = 39/101 (38%), Positives = 58/101 (57%)

Query: 9   GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68
           GIQ LL AE+ A   VS AR  K  RLKQAK+EA+KEV  YK   E E+++  ++  G +
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGN 66

Query: 69  ESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITTIK 109
            +  ++ E ET+ KI+++K +  K    V   L+  +  I 
Sbjct: 67  GAAEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLVCDIS 107

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system [Energy metabolism, ATP-proton motive force interconversion]. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	100.0
KOG1772	108	consensus Vacuolar H+-ATPase V1 sector, subunit G	100.0
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	99.97
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	98.15
PRK08404	103	V-type ATP synthase subunit H; Validated	97.92
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.67
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	96.75
PRK09173	159	F0F1 ATP synthase subunit B; Validated	96.75
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	96.58
CHL00019	184	atpF ATP synthase CF0 B subunit	96.55
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	96.53
PRK07352	174	F0F1 ATP synthase subunit B; Validated	96.38
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	96.29
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	96.29
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	96.19
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	96.18
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	96.08
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	96.07
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.04
PRK01558	198	V-type ATP synthase subunit E; Provisional	95.98
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	95.88
PRK00106	535	hypothetical protein; Provisional	95.86
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	95.83
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	95.74
PRK06231	205	F0F1 ATP synthase subunit B; Validated	95.7
PRK03963	198	V-type ATP synthase subunit E; Provisional	95.6
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	95.56
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	95.54
PRK01194	185	V-type ATP synthase subunit E; Provisional	95.5
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	95.44
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.34
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	95.14
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	95.01
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	95.0
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	94.7
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	94.62
PRK06568	154	F0F1 ATP synthase subunit B; Validated	94.42
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	94.25
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	94.04
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	93.81
PRK12704	520	phosphodiesterase; Provisional	93.63
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	93.36
PRK03963	198	V-type ATP synthase subunit E; Provisional	93.16
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	92.72
PRK05759	156	F0F1 ATP synthase subunit B; Validated	92.71
PRK06669	281	fliH flagellar assembly protein H; Validated	92.62
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	92.57
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	92.52
PRK01005	207	V-type ATP synthase subunit E; Provisional	92.46
PRK05759	156	F0F1 ATP synthase subunit B; Validated	92.2
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	91.86
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	91.83
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	91.65
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	91.29
PRK08404	103	V-type ATP synthase subunit H; Validated	91.16
PRK08475	167	F0F1 ATP synthase subunit B; Validated	91.04
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	90.96
PRK06568	154	F0F1 ATP synthase subunit B; Validated	90.91
PRK00106	535	hypothetical protein; Provisional	90.56
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	90.48
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	90.23
CHL00019	184	atpF ATP synthase CF0 B subunit	90.06
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	89.71
PRK01558	198	V-type ATP synthase subunit E; Provisional	89.51
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	89.17
PRK02292	188	V-type ATP synthase subunit E; Provisional	89.12
PRK09098	233	type III secretion system protein HrpB; Validated	88.77
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	88.47
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	87.74
PRK08475	167	F0F1 ATP synthase subunit B; Validated	86.87
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	86.53
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	86.33
PRK10930	419	FtsH protease regulator HflK; Provisional	85.57
PRK09173	159	F0F1 ATP synthase subunit B; Validated	85.55
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	85.51
PRK07352	174	F0F1 ATP synthase subunit B; Validated	84.63
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	84.5
PRK06231	205	F0F1 ATP synthase subunit B; Validated	84.33
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	83.83
PRK15354	224	type III secretion system protein SsaK; Provisiona	83.13
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	83.0
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	82.97
PRK06669	281	fliH flagellar assembly protein H; Validated	81.91
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	81.9
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	81.64
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	80.92
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	80.86
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	80.44

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=100.00  E-value=1.8e-42  Score=243.58  Aligned_cols=108  Identities=38%  Similarity=0.481  Sum_probs=105.9

Q ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 038359            1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETE   80 (110)
Q Consensus         1 m~~~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~   80 (110)
                      |+|+  ++|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++....+|+++|+
T Consensus         1 M~sq--~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~   78 (113)
T TIGR01147         1 MASQ--TQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ   78 (113)
T ss_pred             CCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            7886  56999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359           81 IKIKQLKDSALKVSKEVTDLLIKYITTIKN  110 (110)
Q Consensus        81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      .+|+.|+.+|++|++.||++||++||+|+|
T Consensus        79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~p  108 (113)
T TIGR01147        79 AKIREIKKAVQKNKDAVIKDLLHLVCDISP  108 (113)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999998

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]

Probab=100.00  E-value=1.2e-41  Score=236.15  Aligned_cols=108  Identities=49%  Similarity=0.641  Sum_probs=106.2

Q ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 038359            1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETE   80 (110)
Q Consensus         1 m~~~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~   80 (110)
                      |+|  .++||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.+..+++.+|+
T Consensus         1 M~S--q~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~   78 (108)
T KOG1772|consen    1 MAS--QSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD   78 (108)
T ss_pred             Ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence            777  489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359           81 IKIKQLKDSALKVSKEVTDLLIKYITTIKN  110 (110)
Q Consensus        81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      .+|..|+.++.+|+++||++||.+||||+|
T Consensus        79 ~ki~~lk~~~~k~~~~Vv~~LL~~V~~v~~  108 (108)
T KOG1772|consen   79 DKIAGLKTSAQKNSDDVVDMLLKYVCDVKP  108 (108)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence            999999999999999999999999999998

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=99.97  E-value=1.6e-31  Score=183.30  Aligned_cols=105  Identities=43%  Similarity=0.617  Sum_probs=86.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 038359            5 RGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIK   84 (110)
Q Consensus         5 ~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~   84 (110)
                      ++|+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...+.|+.+.....|..+|..+|.
T Consensus         1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~   80 (105)
T PF03179_consen    1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIE   80 (105)
T ss_dssp             -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccC
Q 038359           85 QLKDSALKVSKEVTDLLIKYITTIK  109 (110)
Q Consensus        85 ~i~~~~~~nk~~Vv~~Ll~~V~~V~  109 (110)
                      .|+..|.+|++.||++||+.||+|+
T Consensus        81 ~i~~~~~~~~~~vv~~ll~~V~~Vk  105 (105)
T PF03179_consen   81 EIKKSASKNKDKVVDMLLSRVCDVK  105 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999996

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=98.15  E-value=0.00016  Score=50.87  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 038359            7 QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQL   86 (110)
Q Consensus         7 s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i   86 (110)
                      +.-|-.+-.||-.|.+.|.+|+..+.++++.|+.+|...|+.+-..-+..++++....-.........+-.++..++..|
T Consensus         6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~   85 (108)
T COG2811           6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAI   85 (108)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999998887666666667777888888888887


Q ss_pred             HHHHHHhHHHHHHHHHHhhccc
Q 038359           87 KDSALKVSKEVTDLLIKYITTI  108 (110)
Q Consensus        87 ~~~~~~nk~~Vv~~Ll~~V~~V  108 (110)
                      ...  -|.++|+.++++-++.+
T Consensus        86 ~~k--a~~~k~~~~a~~~~~~~  105 (108)
T COG2811          86 LSK--AAEGKVVEAALSEFLAI  105 (108)
T ss_pred             HHH--hHhhHHHHHHHHHHHHH
Confidence            776  67888888888877644

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=97.92  E-value=0.0011  Score=45.76  Aligned_cols=97  Identities=29%  Similarity=0.301  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359           10 IQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDS   89 (110)
Q Consensus        10 IQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~   89 (110)
                      |...=.||.++..++..||......|..|+.+|.++.+....+-..+..................+-.+...++..|...
T Consensus         5 i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~   84 (103)
T PRK08404          5 IKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK   84 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999998888888777777777666555555555566677788888999999


Q ss_pred             HHHhHHHHHHHHHHhhc
Q 038359           90 ALKVSKEVTDLLIKYIT  106 (110)
Q Consensus        90 ~~~nk~~Vv~~Ll~~V~  106 (110)
                      ...+.+.+|++++..+.
T Consensus        85 a~~k~~~av~~~~~~~~  101 (103)
T PRK08404         85 AEENFETAVSEAIKLIR  101 (103)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999998764

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.67  E-value=0.0021  Score=49.33  Aligned_cols=71  Identities=24%  Similarity=0.279  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIK   82 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~   82 (110)
                      .|-.|+.+|..|+.+|++...+-+.+|+.+|++-++.++.+-+.+.+...+............+..+....
T Consensus        21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~   91 (207)
T PRK01005         21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK   91 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999888766666555555555554443

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=96.75  E-value=0.054  Score=35.66  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLK   87 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~   87 (110)
                      -+|=.||.++..+|..|+......|.+|+.+|...++.-...-+.+-.....       .....++.+...-+.+++
T Consensus         2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~-------~Ak~ei~~e~~~a~~e~k   71 (85)
T TIGR02926         2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIK-------EAEEEIEKEAEKIREEGE   71 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999998888777777665553       233344444444444443

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=96.75  E-value=0.073  Score=38.43  Aligned_cols=52  Identities=25%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      .+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....-+.+......
T Consensus        61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~  112 (159)
T PRK09173         61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAET  112 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888888888888888888888876665555554443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=96.58  E-value=0.1  Score=37.82  Aligned_cols=47  Identities=26%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      .|-.|..+|+.|+..|+........++..+|..|++....+-..+..
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~  114 (164)
T PRK14471         68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIE  114 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777765555544444444444444444444333

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.55  E-value=0.11  Score=38.44  Aligned_cols=36  Identities=19%  Similarity=0.155  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVT   47 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe   47 (110)
                      +|-.|.++|..|+..|+..-.+.......+|..|++
T Consensus        84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~  119 (184)
T CHL00019         84 RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLE  119 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777777776666543333333333333333

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=96.53  E-value=0.12  Score=37.72  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH--HHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIK--QLKDS   89 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~--~i~~~   89 (110)
                      +|-.|..+|++|+..|+..-.+...++...|..|.+.....-+.+...........-.....++--+...+|-  .+.. 
T Consensus        70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~-  148 (167)
T PRK14475         70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAG-  148 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCH-
Confidence            4556667777777777776666666666666666666665555555544443333333333333333333332  2211 


Q ss_pred             HHHhHHHHHHHHHHh
Q 038359           90 ALKVSKEVTDLLIKY  104 (110)
Q Consensus        90 ~~~nk~~Vv~~Ll~~  104 (110)
                        .....+||.+|+.
T Consensus       149 --~~~~~lid~~i~~  161 (167)
T PRK14475        149 --AKSDPLVDAAIGQ  161 (167)
T ss_pred             --HHHHHHHHHHHHH
Confidence              2233556655544

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=96.38  E-value=0.17  Score=37.09  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .+|-.|.++|+.|+..|+..-.+....+..+|..+++..+.+-..+.....
T Consensus        78 ~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~  128 (174)
T PRK07352         78 QKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ  128 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888888888776666666666666666666666655555443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=96.29  E-value=0.22  Score=35.23  Aligned_cols=42  Identities=33%  Similarity=0.366  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSH   52 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~   52 (110)
                      ..|-.|..+|..|+..|+..-.+...++..+|..+++....+
T Consensus        54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~   95 (147)
T TIGR01144        54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQ   95 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666554444444444444444333333

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.29  E-value=0.27  Score=35.79  Aligned_cols=48  Identities=27%  Similarity=0.356  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      +|+.+|.+|+++|+..-.+-+.+|+.+|...++.+....+.+......
T Consensus         5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (198)
T PF01991_consen    5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE   52 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998887777777664443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=96.19  E-value=0.24  Score=36.33  Aligned_cols=48  Identities=17%  Similarity=0.257  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      ++|-.|+.+|+.|+..|+..-.+-..++..+|..|++.....-..+..
T Consensus        77 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~  124 (175)
T PRK14472         77 ELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIE  124 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888887777765444444444444444444444444433

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=96.18  E-value=0.36  Score=36.42  Aligned_cols=50  Identities=28%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      ..|.+.+.|.+|++.||..-.+-|.+|+.+|+.-++.-+.+-.+.|....
T Consensus        24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a   73 (191)
T PF06188_consen   24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA   73 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999976666677776433

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=96.08  E-value=0.31  Score=35.09  Aligned_cols=41  Identities=24%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKS   51 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~   51 (110)
                      ++|-.|..+|..|+.+|+..-.........+|..|++....
T Consensus        64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~  104 (159)
T PRK13461         64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIE  104 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777665443333333333333333333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=96.07  E-value=0.3  Score=35.98  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLK----MARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r----~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      ++|-.|+.+|+.|+.+|+..-    ...+.+|+.+|.+-++.-+.+-+.+......
T Consensus        77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~  132 (173)
T PRK13453         77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIA  132 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888888777764    4455555555555555555555555544443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.04  E-value=0.31  Score=35.94  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE   63 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~   63 (110)
                      .|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+.......
T Consensus        13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r   61 (188)
T PRK02292         13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ   61 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999988888888876653

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=95.98  E-value=0.45  Score=35.87  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLE   54 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE   54 (110)
                      +|+.+|..|+++|++.-..-+.+|+.+|+.-++..+.+-+
T Consensus        19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988777555555

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=95.88  E-value=0.4  Score=35.19  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLY   49 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~y   49 (110)
                      |-.|..+|..|+..|+..-.+...+...+|..|++..
T Consensus        77 l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~  113 (173)
T PRK13460         77 LNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ  113 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666655553333333333333333333

>PRK00106 hypothetical protein; Provisional

Probab=95.86  E-value=0.21  Score=43.48  Aligned_cols=53  Identities=28%  Similarity=0.124  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359            9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .=-+||.|++.|.+|+.+|+..-..-+++|..+|+.++..++.+-++++....
T Consensus        33 ~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R   85 (535)
T PRK00106         33 AELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYR   85 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33478999999999998888876555666666665555555555555544433

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=95.83  E-value=0.098  Score=39.53  Aligned_cols=56  Identities=32%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038359            9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET   64 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~   64 (110)
                      +=..|..|+..|..|+..|+..=....+++..+|..++-.+|.+-|.+|+....+.
T Consensus        25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el   80 (201)
T PF12072_consen   25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL   80 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568899999999999999998889999999999999999999999999777654

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=95.74  E-value=0.54  Score=36.57  Aligned_cols=40  Identities=28%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQA---KDEAEKEVTLYKSH   52 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqA---K~eA~~EIe~yr~~   52 (110)
                      |=.|..+|+.||.+|+..-..-+.++   ..+|..|.+..+..
T Consensus        46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~   88 (255)
T TIGR03825        46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE   88 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888887755554444   34444444444433

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=95.70  E-value=0.44  Score=36.26  Aligned_cols=52  Identities=21%  Similarity=0.132  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLK----MARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r----~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      ..|-.|..+|+.|+..|+..-    ...+.+|+.+|.+.++.-+.+-+.+-+....
T Consensus       107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~  162 (205)
T PRK06231        107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKE  162 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888887764    4556666666666666666666655555543

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=95.60  E-value=0.59  Score=34.58  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------hcCCchhHHHHHHHHHHH
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR----ISE--------TSGSSESTVKRLEEETEI   81 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~----~~~--------~~g~~~~~~~~l~~et~~   81 (110)
                      =.|..+|..|+++|+..-.+.+.+|..+|+.+.+.+...-+.+-...    .+.        ...-.......+=.++..
T Consensus        13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~   92 (198)
T PRK03963         13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRE   92 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888999999999999888888888888876665544333332211    111        111223334444455556


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 038359           82 KIKQLKDSALKVSKEVTDLLIKY  104 (110)
Q Consensus        82 ~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      +|..+...  .+++-+.++|...
T Consensus        93 ~l~~~~~~--~Y~~~l~~li~~a  113 (198)
T PRK03963         93 RLAELPED--EYFETLKALTKEA  113 (198)
T ss_pred             HHHhhhhh--hHHHHHHHHHHHH
Confidence            66655543  4555555555544

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=95.56  E-value=0.59  Score=33.81  Aligned_cols=50  Identities=34%  Similarity=0.347  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .|-.|..+|..|+..||..    +...+.+|+.+|...++..+.+-+.+-....
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~  121 (164)
T PRK14473         68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRML  121 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666653    3444555555555555554444444444333

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=95.54  E-value=0.55  Score=34.70  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNL   30 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~   30 (110)
                      +|-.|..+|+.|+..|+..
T Consensus        87 ~L~~A~~ea~~Ii~~A~~~  105 (184)
T PRK13455         87 KQREVQEQADRIVAAAKDE  105 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444455555555554444

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=95.50  E-value=0.3  Score=36.59  Aligned_cols=91  Identities=9%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGS------------SESTVKRLEEETEIK   82 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~------------~~~~~~~l~~et~~~   82 (110)
                      .|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........++            .......+=..+..+
T Consensus        13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~   92 (185)
T PRK01194         13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH   92 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999888887776655444322            122333334445555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhc
Q 038359           83 IKQLKDSALKVSKEVTDLLIKYIT  106 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~Ll~~V~  106 (110)
                      |..+-..- .+++-+.++|+..++
T Consensus        93 L~~l~~~~-~Y~~~L~~LI~~a~~  115 (185)
T PRK01194         93 LMNITKSK-EYDSILNKMIEVAIK  115 (185)
T ss_pred             HHcccCCc-hHHHHHHHHHHHHHH
Confidence            55554211 555555555555544

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=95.44  E-value=0.3  Score=36.39  Aligned_cols=27  Identities=11%  Similarity=0.186  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038359           75 LEEETEIKIKQLKDSALKVSKEVTDLL  101 (110)
Q Consensus        75 l~~et~~~i~~i~~~~~~nk~~Vv~~L  101 (110)
                      ++.+...-+..+...+..--..++..|
T Consensus       136 I~~~k~~a~~~l~~~a~~lA~~i~~kL  162 (181)
T PRK13454        136 IAEIRAGALESVEEVAKDTAEALVAAL  162 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.34  E-value=0.5  Score=39.86  Aligned_cols=47  Identities=23%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      .|-.|..+|+.|+.+|+..-.+...++..+|..|++..+.+-..+..
T Consensus        61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie  107 (445)
T PRK13428         61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQ  107 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666677777777777665555555555555555544444444444

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=95.14  E-value=0.44  Score=34.43  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++..++.+||..-...+.+|+.+|+.+.+....+-..+......       ....+++.+...-+..++..+..-...++
T Consensus        78 e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~i~~ek~~a~~~l~~~v~~lA~~ia  150 (156)
T CHL00118         78 QYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLN-------EATKQLEAQKEKALKSLEEQVDTLSDQIE  150 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444333332       23334444555555555544444444333


Q ss_pred             HH
Q 038359           99 DL  100 (110)
Q Consensus        99 ~~  100 (110)
                      ..
T Consensus       151 ~k  152 (156)
T CHL00118        151 EK  152 (156)
T ss_pred             Hh
Confidence            33

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.01  E-value=0.57  Score=32.01  Aligned_cols=67  Identities=27%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 038359           17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSA   90 (110)
Q Consensus        17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~   90 (110)
                      ..++..++..||.....-+.+|+.+|..+++....+-+.+......       .....++.+...-+..++..+
T Consensus        53 ~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~-------~a~~~i~~e~~~a~~~l~~~~  119 (132)
T PF00430_consen   53 LAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIE-------QAEAEIEQEKEKAKKELRQEI  119 (132)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666666666666666666555555554442       333344444444444444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=95.00  E-value=0.98  Score=34.95  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRISE   63 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~   63 (110)
                      ++|-.|+++|..|+.+|+..    +...+.+|+.+|...++..+..-+.+......+
T Consensus        64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~  120 (246)
T TIGR03321        64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE  120 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778889999999977664    667788888888888877777777776655543

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=94.70  E-value=1.3  Score=34.73  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359            9 GIQMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS   65 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~   65 (110)
                      .-++|-.|++++..|+..|+..    +..-+.+|+.+|...++..+..-+.+-+....+..
T Consensus        62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~  122 (250)
T PRK14474         62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQ  122 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778888999999888875    66667777777777777777777766666655443

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=94.62  E-value=1.5  Score=33.44  Aligned_cols=77  Identities=13%  Similarity=0.206  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359           21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL  100 (110)
Q Consensus        21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~  100 (110)
                      ...+.+||..-...+..|+.+|+.+.+.-+.+-+.+-....       .....++..+...-+.++......--..++..
T Consensus       111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l-------~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~K  183 (204)
T PRK09174        111 EQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKL-------KEAEARIAAIKAKAMADVGSIAEETAAAIVEQ  183 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443333332       34455666666666677777777666666666


Q ss_pred             HHHh
Q 038359          101 LIKY  104 (110)
Q Consensus       101 Ll~~  104 (110)
                      ||..
T Consensus       184 llg~  187 (204)
T PRK09174        184 LIGG  187 (204)
T ss_pred             HhCc
Confidence            6654

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=94.42  E-value=0.84  Score=33.67  Aligned_cols=62  Identities=11%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359           21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDS   89 (110)
Q Consensus        21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~   89 (110)
                      .....+||......+.+|+..|.+.++.-+.+-..+-.....       ....+++.+...-+.+++..
T Consensus        62 e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~-------~A~~~Ie~Ek~~Al~elr~e  123 (154)
T PRK06568         62 NAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKS-------DAIQLIQNQKSTASKELQDE  123 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433333322       22333444444444444443

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=94.25  E-value=0.81  Score=29.99  Aligned_cols=50  Identities=24%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359            9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      .=..|-.|..+|..|+..|+.....-..++..+|..|.......-..+..
T Consensus        11 ~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~   60 (85)
T TIGR02926        11 AEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE   60 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788889999999988887777777777766666655544444444

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=94.04  E-value=1.7  Score=31.76  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSAL   91 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~   91 (110)
                      ..+-.++...+.+||.....-+.+|+.+|...+++++.+-+.++.....       ....+++.+-..-+.+++..+.
T Consensus        57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~-------~a~~~I~~e~~~a~~~l~~~~~  127 (161)
T COG0711          57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKE-------AAEAEIEAEKERALEELRAEVA  127 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555667777777777777788888888888888888877776654       2233444444444444444444

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=93.81  E-value=2  Score=31.88  Aligned_cols=48  Identities=27%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      -.|..+|..|+..|+..-.+...++..+|+.|++....+-+..+....
T Consensus        93 ~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k  140 (181)
T PRK13454         93 ADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIR  140 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443333

>PRK12704 phosphodiesterase; Provisional

Probab=93.63  E-value=2.7  Score=36.34  Aligned_cols=51  Identities=29%  Similarity=0.354  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      .+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus        32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~   82 (520)
T PRK12704         32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN   82 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445799999999999998776778999999999999999999888755443

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=93.36  E-value=2.2  Score=30.79  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=17.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           32 MARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        32 ~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      ..+|.+|+.+|..-++.-+.+-+.......
T Consensus        80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~  109 (156)
T CHL00118         80 EQELSKARKEAQLEITQSQKEAKEIVENEL  109 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666666666666666666555555444

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=93.16  E-value=2.6  Score=31.11  Aligned_cols=46  Identities=24%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      +.-...|..+|+....+.|.+|+.+|+..++....+-+.+......
T Consensus         5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~   50 (198)
T PRK03963          5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILR   50 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566799999999999999999999999999988888877665554

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=92.72  E-value=2.9  Score=30.53  Aligned_cols=50  Identities=28%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR   60 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~   60 (110)
                      +.|-+|..+|+.||+.|+..-..-...++.+|+.|.+.....-+.+...-
T Consensus        65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e  114 (161)
T COG0711          65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE  114 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999888666666666666666665555554444433

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=92.71  E-value=2.6  Score=29.90  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038359           18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEV   97 (110)
Q Consensus        18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V   97 (110)
                      .++..++.+|+......+.+|+.+|+.+.+....+-..+-.....       .....+..+...-+..++..+..--..+
T Consensus        59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~  131 (156)
T PRK05759         59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG  131 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666666666666555554443       3344555666666666666655555555


Q ss_pred             HHHHHHhh
Q 038359           98 TDLLIKYI  105 (110)
Q Consensus        98 v~~Ll~~V  105 (110)
                      +..+|..-
T Consensus       132 a~k~l~~~  139 (156)
T PRK05759        132 AEKILGRE  139 (156)
T ss_pred             HHHHHHhH
Confidence            55555443

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=92.62  E-value=4.1  Score=31.96  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359            8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK   44 (110)
Q Consensus         8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~   44 (110)
                      .-+..|++|..+|..|+.+||..-.+.+.+|+.+++.
T Consensus        78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~  114 (281)
T PRK06669         78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER  114 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544444444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=92.57  E-value=5.8  Score=34.26  Aligned_cols=51  Identities=31%  Similarity=0.317  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      .|-.|+.+|..|+.+|...=....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus        26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~   76 (514)
T TIGR03319        26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRN   76 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688888888888887766677888889999999999988888755544

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=92.52  E-value=2.8  Score=29.89  Aligned_cols=92  Identities=20%  Similarity=0.150  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHH
Q 038359            9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSG----SSESTVKRLEEETEIKIK   84 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g----~~~~~~~~l~~et~~~i~   84 (110)
                      .|..-|..=.++..-+..++..-...|.+|+.+|...++..+.+-..+......+...    ........++.+...-..
T Consensus        42 ~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~  121 (141)
T PRK08476         42 SIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKE  121 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444445555555666666677777777777777666666665544433221    122333344445555555


Q ss_pred             HHHHHHHHhHHHHHHH
Q 038359           85 QLKDSALKVSKEVTDL  100 (110)
Q Consensus        85 ~i~~~~~~nk~~Vv~~  100 (110)
                      .++..+..-.+.++..
T Consensus       122 ~l~~qv~~~~~~~~~~  137 (141)
T PRK08476        122 QLLSQMPEFKEALNAK  137 (141)
T ss_pred             HHHHhHHHHHHHHHHH
Confidence            5555555555554443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=92.46  E-value=3.9  Score=31.38  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=21.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 038359            7 QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKS   51 (110)
Q Consensus         7 s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~   51 (110)
                      ..-||+|++.-+  .+|+.+|+..-...|.+|+.+|..=|++=+.
T Consensus         7 ~~k~q~L~dki~--~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~   49 (207)
T PRK01005          7 QDKLKQICDALR--EETLKPAEEEAGAIVHNAKEQAKRIIAEAQE   49 (207)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555554433  4555555555555555555555444444333

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=92.20  E-value=3  Score=29.53  Aligned_cols=49  Identities=22%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQK   59 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~   59 (110)
                      ..|-.|..+|..|+..|+..    +...+.+|+.+|+.-++..+..-+.+.+.
T Consensus        63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~  115 (156)
T PRK05759         63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKR  115 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888887775    55555666666666555555555544443

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=91.86  E-value=3.2  Score=28.98  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++......||.....-+.+|+.+|.++.+.....-..+-.....       .....++.+...-+..++..+..-...++
T Consensus        61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~v~~la~~~a  133 (140)
T PRK07353         61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKE-------KARREIEQQKQAALAQLEQQVDALSRQIL  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555444444444332       33445555666666666555555444444


Q ss_pred             HHHH
Q 038359           99 DLLI  102 (110)
Q Consensus        99 ~~Ll  102 (110)
                      ..||
T Consensus       134 ~kll  137 (140)
T PRK07353        134 EKLL  137 (140)
T ss_pred             HHhh
Confidence            4443

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=91.83  E-value=7.1  Score=32.99  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      ..+...++.+|+.....-+.+|+.+|+++.+....+-+.+......
T Consensus        55 ~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~  100 (445)
T PRK13428         55 DQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKV  100 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666666666666666666666666666666666555543

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=91.65  E-value=4.8  Score=30.67  Aligned_cols=40  Identities=13%  Similarity=0.047  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           22 HIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        22 ~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .-.......-.+.|.+|+.+|..-|+..|.+-+.+.....
T Consensus       101 ~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~  140 (204)
T PRK09174        101 QEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAER  140 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445666666666666665555555444333

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=91.29  E-value=4.2  Score=29.31  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359           21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL  100 (110)
Q Consensus        21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~  100 (110)
                      ..++..||......+.+|+.+|+..++....+-..+-.....       .....++.+...-+..++..+..---.++..
T Consensus        66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~i~~ek~~a~~~l~~~i~~la~~~a~k  138 (164)
T PRK14471         66 ERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIE-------QAKASIESEKNAAMAEIKNQVANLSVEIAEK  138 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555444444443333333332       2333444555555555444444433333333


Q ss_pred             HH
Q 038359          101 LI  102 (110)
Q Consensus       101 Ll  102 (110)
                      +|
T Consensus       139 il  140 (164)
T PRK14471        139 VL  140 (164)
T ss_pred             HH
Confidence            33

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=91.16  E-value=3.5  Score=28.21  Aligned_cols=51  Identities=27%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      +.|-.|..+|..|+..|+..    ...-+.+|+.+|..-++..+..-+.+-....
T Consensus        17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~   71 (103)
T PRK08404         17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL   71 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888888877775    3444666666666666666665555554443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=91.04  E-value=4.8  Score=29.51  Aligned_cols=25  Identities=36%  Similarity=0.239  Sum_probs=11.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           35 LKQAKDEAEKEVTLYKSHLETEYQK   59 (110)
Q Consensus        35 LKqAK~eA~~EIe~yr~~kE~efk~   59 (110)
                      |.+|+.+|..-|+..+.+-+.....
T Consensus        83 L~~Ar~eA~~Ii~~A~~eAe~~~~~  107 (167)
T PRK08475         83 LEEAKEKAELIVETAKKEAYILTQK  107 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=90.96  E-value=4.6  Score=29.13  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359           32 MARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGS----SESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLI  102 (110)
Q Consensus        32 ~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~----~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll  102 (110)
                      ..+|.+|+.+|..-|+..+.+-+..+.....+....    .......++.+...-+..++.....---.+...+|
T Consensus        66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil  140 (164)
T PRK14473         66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVL  140 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555554444444333221111    12233445555555555555544444444443333

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=90.91  E-value=5.1  Score=29.54  Aligned_cols=47  Identities=13%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      .|-.|..+|+.|+.+|+....+-..+++.+|..|++....+-..+..
T Consensus        64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie  110 (154)
T PRK06568         64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ  110 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777777777777777777777777666665444444

>PRK00106 hypothetical protein; Provisional

Probab=90.56  E-value=9.3  Score=33.44  Aligned_cols=47  Identities=30%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK   59 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~   59 (110)
                      |-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+.
T Consensus        48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e   94 (535)
T PRK00106         48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS   94 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999998777778999999999999999999888743

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=90.48  E-value=4.9  Score=28.67  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKE   45 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~E   45 (110)
                      ....+...++..||..-...+..|..+|..|
T Consensus        59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~e   89 (141)
T PRK08476         59 EIEHEIETILKNAREEANKIRQKAIAKAKEE   89 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555433333333333333

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=90.23  E-value=5.7  Score=29.03  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038359           18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEV   97 (110)
Q Consensus        18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V   97 (110)
                      .++...+.+|+......+..|+.+|+.+.+....+-..+-.....       .....++.+...-+..++..+..---.+
T Consensus        71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~-------~a~~~ie~e~~~a~~el~~ei~~lA~~~  143 (173)
T PRK13460         71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD-------QAVKEIELAKGKALSQLQNQIVEMTITI  143 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666677777777777777777777766666666655543       3344556666666666665555544444


Q ss_pred             HHHHHHh
Q 038359           98 TDLLIKY  104 (110)
Q Consensus        98 v~~Ll~~  104 (110)
                      ...+|..
T Consensus       144 a~kil~~  150 (173)
T PRK13460        144 ASKVLEK  150 (173)
T ss_pred             HHHHHHH
Confidence            4444443

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=90.06  E-value=6.1  Score=29.15  Aligned_cols=44  Identities=11%  Similarity=0.020  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .++..++..||......+..|+.+|+.+.+....+-..+-....
T Consensus        79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~  122 (184)
T CHL00019         79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLE  122 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666666665555554444444333

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=89.71  E-value=6.5  Score=28.95  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038359           20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTD   99 (110)
Q Consensus        20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~   99 (110)
                      +...+..||......+.+|+.+|+.+.+..+.+-+.+-....       ......++.+...-+..++..+..---.++.
T Consensus        84 ~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~-------~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~  156 (184)
T PRK13455         84 YERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL-------AAAEDQIASAEAAAVKAVRDRAVSVAVAAAA  156 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555555555554444444433322       2333444555555555554444443333333


Q ss_pred             HH
Q 038359          100 LL  101 (110)
Q Consensus       100 ~L  101 (110)
                      .+
T Consensus       157 ki  158 (184)
T PRK13455        157 DV  158 (184)
T ss_pred             HH
Confidence            33

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=89.51  E-value=7.4  Score=29.28  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAE   43 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~   43 (110)
                      |-+|+++|.+||.+|++.-.+-++.|+.+|.
T Consensus        28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5578888888888888886655555444444

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.17  E-value=5.3  Score=27.13  Aligned_cols=87  Identities=22%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 038359            8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLK   87 (110)
Q Consensus         8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~   87 (110)
                      +.|+..+.-=.....-+......=..+|.+|+.+|..-++..+.+-+........+           .+.+....+..-.
T Consensus        33 ~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e-----------a~~~~~~~~~~a~  101 (132)
T PF00430_consen   33 AKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE-----------AEKEAERIIEQAE  101 (132)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            44544443333333334445555567788999999999988888888888766542           3333444444444


Q ss_pred             HHHHHhHHHHHHHHHHhh
Q 038359           88 DSALKVSKEVTDLLIKYI  105 (110)
Q Consensus        88 ~~~~~nk~~Vv~~Ll~~V  105 (110)
                      .....-+..+...|-..+
T Consensus       102 ~~i~~e~~~a~~~l~~~~  119 (132)
T PF00430_consen  102 AEIEQEKEKAKKELRQEI  119 (132)
T ss_dssp             HHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444443333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=89.12  E-value=7.2  Score=28.62  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI-SETSGSSESTVKRLEEETEIKIKQLKDS   89 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~-~~~~g~~~~~~~~l~~et~~~i~~i~~~   89 (110)
                      |=+|+++|..|+++|++.=.+-..++..+|.++...+.......-.... ...+.-.......+=.++..+|..+-..
T Consensus        22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~   99 (188)
T PRK02292         22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD   99 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            3468889999999998887777777888888888777665444433222 2244455566666777777777766653

>PRK09098 type III secretion system protein HrpB; Validated

Probab=88.77  E-value=9.6  Score=29.62  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      +..+|+++||..=.+-|-+|+.+|+.=++..+.+.|..|+
T Consensus        40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~   79 (233)
T PRK09098         40 ERDAVLAAARARAERIVAEARAQAEAILEAARREADRSAR   79 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777776677777777777777766666666555

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=88.47  E-value=6.8  Score=27.50  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++..++.+||..-...+.+|+.+|....+....+-+.+-....       ......++.+...-+..++.....---.++
T Consensus        51 e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~-------~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a  123 (147)
T TIGR01144        51 KAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIK-------AQARAEIEAEKEQAREELRKQVADLSVLGA  123 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555544444444443333       234445566666666666666666555555


Q ss_pred             HHHHHhhc
Q 038359           99 DLLIKYIT  106 (110)
Q Consensus        99 ~~Ll~~V~  106 (110)
                      ..||..-+
T Consensus       124 ~kll~~~l  131 (147)
T TIGR01144       124 EKIIERNI  131 (147)
T ss_pred             HHHHHHHc
Confidence            55555433

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=87.74  E-value=8.7  Score=27.93  Aligned_cols=78  Identities=17%  Similarity=0.252  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++...++.||.....-+.+|+.+|+.+++.-+.+-+.+.....       ......++.+...-+.+++..+..---.++
T Consensus        66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~A~~~I~~e~~~a~~el~~e~~~lAv~~A  138 (167)
T PRK14475         66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRA-------EMAERKIAQAEAQAAADVKAAAVDLAAQAA  138 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555554444444433333333       234455666666666666665555554444


Q ss_pred             HHHHH
Q 038359           99 DLLIK  103 (110)
Q Consensus        99 ~~Ll~  103 (110)
                      ..+|.
T Consensus       139 ~kil~  143 (167)
T PRK14475        139 ETVLA  143 (167)
T ss_pred             HHHHH
Confidence            44443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=86.87  E-value=10  Score=27.77  Aligned_cols=47  Identities=15%  Similarity=0.136  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      ....++..++.+||......+.+|+.+|+.+.+..-.+-..+.....
T Consensus        74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~  120 (167)
T PRK08475         74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI  120 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466777778888888888888888888877776666666665544

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=86.53  E-value=11  Score=27.68  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 038359           33 ARLKQAKDEAEKEVTLYKSHLETEYQKRISETS----GSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKY  104 (110)
Q Consensus        33 ~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~----g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      ++|.+|+.+|..-++..+.+-+........+..    .-.......++.+...-+..++..+..---.++..+|..
T Consensus        77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~  152 (173)
T PRK13453         77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK  152 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            335555555555555555544444443332211    111234455666666666666666655555555555543

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=86.33  E-value=11  Score=27.55  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038359           20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTD   99 (110)
Q Consensus        20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~   99 (110)
                      +...+..||.....-+..|+.+|+.+.+....+-..+-.....       .....++.+...-+..++..+..---.++.
T Consensus        75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~  147 (175)
T PRK14472         75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIA-------SAKEEIEQEKRRALDVLRNEVADLAVKGAE  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555544444444443332       333445555555555555544444444444


Q ss_pred             HHH
Q 038359          100 LLI  102 (110)
Q Consensus       100 ~Ll  102 (110)
                      .+|
T Consensus       148 kil  150 (175)
T PRK14472        148 KII  150 (175)
T ss_pred             HHH
Confidence            443

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=85.57  E-value=13  Score=31.43  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEV   46 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EI   46 (110)
                      ..+||..|.+|+..||....+.+-+|.-.++..|
T Consensus       265 i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i  298 (419)
T PRK10930        265 IREAEAYTNEVQPRANGQAQRILEEARAYKAQTI  298 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666665555555544444433

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=85.55  E-value=11  Score=26.96  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359           21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL  100 (110)
Q Consensus        21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~  100 (110)
                      ...+..||..-..-+.+|+.+|+..++.-+.+-+.+.....       .....+++.+...-+.+++..+..---.++..
T Consensus        60 e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~-------~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~k  132 (159)
T PRK09173         60 QRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRN-------KLAEQKIAQAETDAINAVRSSAVDLAIAAAEK  132 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443333322       22444566666666666666655555555544


Q ss_pred             HHHh
Q 038359          101 LIKY  104 (110)
Q Consensus       101 Ll~~  104 (110)
                      +|..
T Consensus       133 il~~  136 (159)
T PRK09173        133 LLAE  136 (159)
T ss_pred             HHHh
Confidence            4443

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=85.51  E-value=13  Score=27.60  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      +....+.+||..-.+-..+|+..+..|.+.=+..-|++++                  .--...|+.|...+.+-+....
T Consensus        66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~------------------~~~~~~~~~~~~~~~~~~~~~~  127 (155)
T PRK06569         66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK------------------NSINQNIEDINLAAKQFRTNKS  127 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHH
Confidence            3344444444444444444444444444444444444444                  3334445555555555555666


Q ss_pred             HHHHHhhccc
Q 038359           99 DLLIKYITTI  108 (110)
Q Consensus        99 ~~Ll~~V~~V  108 (110)
                      +-|++..|+|
T Consensus       128 ~~~i~~~~~i  137 (155)
T PRK06569        128 EAIIKLAVNI  137 (155)
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=84.63  E-value=13  Score=27.06  Aligned_cols=41  Identities=17%  Similarity=0.059  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR   60 (110)
Q Consensus        20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~   60 (110)
                      +...+..||......+.+|+.+|+.+.+....+-+.+-...
T Consensus        76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~  116 (174)
T PRK07352         76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARL  116 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555444444444433

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=84.50  E-value=24  Score=30.56  Aligned_cols=50  Identities=24%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359           16 AEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS   65 (110)
Q Consensus        16 AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~   65 (110)
                      +.+.|..++..|+..-..-+++|..+|+.++..++.+-+.++.....+..
T Consensus        19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele   68 (514)
T TIGR03319        19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE   68 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999998888888999999999999999999999888776654

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=84.33  E-value=16  Score=27.74  Aligned_cols=28  Identities=11%  Similarity=-0.060  Sum_probs=14.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           34 RLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        34 rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      +|.+|+.+|..-++..+.+-+.......
T Consensus       108 ~L~~A~~eA~~Ii~~A~~eAe~~~e~i~  135 (205)
T PRK06231        108 RHENALAQAKEIIDQANYEALQLKSELE  135 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555554444333

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=83.83  E-value=11  Score=25.33  Aligned_cols=51  Identities=20%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET   64 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~   64 (110)
                      =+|.+....++.+||..-...+...+.+++.+...|..+-+..........
T Consensus        21 ~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l   71 (105)
T PF03179_consen   21 EEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEEL   71 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            356667777777777777777777777777777776666665555544433

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=83.13  E-value=21  Score=28.13  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRL   75 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l   75 (110)
                      |=.|-..|.+||..|-.++..-|.||..+|.+=+.+-+.+.|.+.-.---...-..+.....|
T Consensus        47 l~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~qHV~wLve~e~lE~sL  109 (224)
T PRK15354         47 VSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQEDENQFRSL  109 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            445678899999999999999999999999999999999999988754433433333433333

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=83.00  E-value=20  Score=27.97  Aligned_cols=66  Identities=14%  Similarity=0.135  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSAL   91 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~   91 (110)
                      ++...+..|+..+...+.+|+.+|+.+.+....+-..+......       .....++.+...-+..++..+.
T Consensus        61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~-------~a~~~ie~Ek~~a~~~L~~~v~  126 (250)
T PRK14474         61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARD-------EWLEQLEREKQEFFKALQQQTG  126 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666677777777777766665555554444444432       2333444444444444444433

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=82.97  E-value=19  Score=27.72  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR   60 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~   60 (110)
                      ++...+.+|+......+.+|+.+|+.+.+....+-..+....
T Consensus        61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~  102 (246)
T TIGR03321        61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEI  102 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666666666666655555544444444433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=81.91  E-value=23  Score=27.76  Aligned_cols=49  Identities=16%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR   60 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~   60 (110)
                      .+-.+..+|..++.+|+..-..-|-.|+.+++..+..++.+.+.-+..-
T Consensus        71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a  119 (281)
T PRK06669         71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA  119 (281)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445578899999999999999999999999999999998888877743

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=81.90  E-value=15  Score=25.84  Aligned_cols=27  Identities=41%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359           19 EAQHIVSSARNLKMARLKQAKDEAEKE   45 (110)
Q Consensus        19 eA~~iV~~AR~~r~~rLKqAK~eA~~E   45 (110)
                      +|..|+++||..-.+-+.+|..+++..
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~   40 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEAS   40 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999888888888877653

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=81.64  E-value=17  Score=26.03  Aligned_cols=32  Identities=38%  Similarity=0.495  Sum_probs=18.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           31 KMARLKQAKDEAEKEVTLYKSHLETEYQKRIS   62 (110)
Q Consensus        31 r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~   62 (110)
                      -..+|.+|+.+|..-|+..+.+-+........
T Consensus        62 ~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~   93 (159)
T PRK13461         62 NERELKNAKEEGKKIVEEYKSKAENVYEEIVK   93 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34446666666666666666655555554443

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=80.92  E-value=16  Score=25.36  Aligned_cols=36  Identities=11%  Similarity=0.136  Sum_probs=26.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           28 RNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE   63 (110)
Q Consensus        28 R~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~   63 (110)
                      ...-..+|.+|+.+|..-++..+.+-+.+.....+.
T Consensus        59 ~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~   94 (140)
T PRK07353         59 EAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAE   94 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445688888888888888888888887766653

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=80.86  E-value=22  Score=26.97  Aligned_cols=47  Identities=30%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI   61 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~   61 (110)
                      .|+.+|..|..+|+..-.+...+|+.+|+.-++.+....+.+-....
T Consensus        14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~   60 (194)
T COG1390          14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER   60 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888877777777777777777777766666655443

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=80.44  E-value=19  Score=25.94  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSH   52 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~   52 (110)
                      +|..++..|+.+|...-..++......+.++++..+..
T Consensus        16 eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (198)
T PF01991_consen   16 EAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKER   53 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555544444444444444444444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
2k88_A	60	Association Of Subunit D (Vma6p) And E (Vma4p) With		3e-05
4dl0_K	119	Crystal Structure Of The Heterotrimeric Egchead Per		4e-05

>pdb|2K88|A Chain A, Association Of Subunit D (Vma6p) And E (Vma4p) With G (Vma10p) And The Nmr Solution Structure Of Subunit G (G1- 59) Of The Saccharomyces Cerevisiae V1vo Atpase Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 7  QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYK 50
          + GI  LL AE+EA  IVS AR  +  +LKQAK +A KE+  YK
Sbjct: 5  KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYK 48

>pdb|4DL0|K Chain K, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 119

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 9  GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYK 50
          GI  LL AE+EA  IVS AR  +  +LKQAK +A KE+  YK
Sbjct: 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYK 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2k88_A	60	Vacuolar proton pump subunit G; G subunit, V1VO AT	6e-11

>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Length = 60

 Score = 52.7 bits (126), Expect = 6e-11
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 7  QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK 59
          + GI  LL AE+EA  IVS AR  +  +LKQAK +A KE+  YK   + E ++
Sbjct: 5  KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKE 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.65
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	96.57
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	95.84
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	94.88
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	94.24
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.06
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	90.9

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=100.00  E-value=1.5e-42  Score=244.70  Aligned_cols=107  Identities=31%  Similarity=0.424  Sum_probs=93.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 038359            4 FRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKI   83 (110)
Q Consensus         4 ~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i   83 (110)
                      +++|+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++....+++++|+.+|
T Consensus         6 mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki   85 (119)
T 4efa_G            6 MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGEL   85 (119)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359           84 KQLKDSALKVSKEVTDLLIKYITTIKN  110 (110)
Q Consensus        84 ~~i~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      ..|+.+|.+|++.||++||++||||+|
T Consensus        86 ~~i~~~~~~~k~~Vv~~Ll~~V~dvkp  112 (119)
T 4efa_G           86 AEIKKIAEKKKDDVVKILIETVIKPSA  112 (119)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999998

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.65  E-value=0.021  Score=41.09  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCchhHHHHHHHHHHHH
Q 038359           15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET------------SGSSESTVKRLEEETEIK   82 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~------------~g~~~~~~~~l~~et~~~   82 (110)
                      +|+.+|..|+++|+..-..-+.+|+.+|+...+.....-+.+.+......            +.-.+.....+-.++...
T Consensus        10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~   89 (187)
T 3v6i_A           10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA   89 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999999999999999998888777777665443221            223344445555555666


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Q 038359           83 IKQLKDSALKVSKEVTDLLIKY  104 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      |..+-.+ ..+.+-+.++++..
T Consensus        90 L~~~~~~-~~Y~~~L~~Li~ea  110 (187)
T 3v6i_A           90 LEALPQK-PEWPEVVRKLALEA  110 (187)
T ss_dssp             HHHGGGS-TTHHHHHHHHHHHH
T ss_pred             HHhhhCC-ccHHHHHHHHHHHH
Confidence            6555443 22334344444433

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=96.57  E-value=0.0049  Score=37.83  Aligned_cols=36  Identities=28%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359            9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK   44 (110)
Q Consensus         9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~   44 (110)
                      =|..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus        17 vL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke   52 (56)
T 2k6i_A           17 AIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK   52 (56)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566899999999999999999999999999974

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=95.84  E-value=0.13  Score=30.64  Aligned_cols=48  Identities=33%  Similarity=0.351  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      +.|-.|-.+|..||..|+....+...++..+|..|.+....+--.+..
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie   49 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999998888888887777777766655444443

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=94.88  E-value=0.55  Score=31.89  Aligned_cols=90  Identities=22%  Similarity=0.322  Sum_probs=55.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 038359            6 GQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAK-----------DEAEKEVTLYKSHLETEYQKRISETSGSSESTVKR   74 (110)
Q Consensus         6 ~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK-----------~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~   74 (110)
                      |..-|+.|-.=|++=...+..||+.=...++.|.           ..|...-.+|+..-+.+-.           .+...
T Consensus         4 g~gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~e   72 (105)
T 3v6i_B            4 GLGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLAR   72 (105)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence            4455666655555555555555555445554444           4444444444444444433           33345


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 038359           75 LEEETEIKIKQLKDSALKVSKEVTDLLIKYIT  106 (110)
Q Consensus        75 l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~  106 (110)
                      ........-+.++.....+-+..|..+|..|+
T Consensus        73 ara~Aeaea~~v~~~A~~r~~~Av~~vLkeVL  104 (105)
T 3v6i_B           73 YRERAEAEAKAVREKAMARLDEAVALVLKEVL  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence            55666777788899999999999999999886

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=94.24  E-value=1.1  Score=32.99  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCchhHHHHHHHHHHH
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE------------TSGSSESTVKRLEEETEI   81 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~------------~~g~~~~~~~~l~~et~~   81 (110)
                      -+|+..|.+|..+|...-..-..++..++...|..+...++.+.......            .+...+.....+-.++..
T Consensus        26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~  105 (233)
T 4efa_E           26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE  105 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999887555445555555555655555544444322211            123344555556666777


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 038359           82 KIKQLKDSALKVSKEVTDLLIKYI  105 (110)
Q Consensus        82 ~i~~i~~~~~~nk~~Vv~~Ll~~V  105 (110)
                      +|..+..+-..++.-+..+++..+
T Consensus       106 ~L~~~~~d~~~Y~~lL~~Li~eal  129 (233)
T 4efa_E          106 KLSGIANNRDEYKPILQSLIVEAL  129 (233)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHH
Confidence            776665444444444444444443

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.06  E-value=0.18  Score=29.85  Aligned_cols=38  Identities=39%  Similarity=0.496  Sum_probs=28.9

Q ss_pred             hHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359            8 GGIQMLL-----NAEQEAQHIVSSARNLKMARLKQAKDEAEKE   45 (110)
Q Consensus         8 ~GIQqLL-----~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~E   45 (110)
                      .|+..|.     +|..+|..|+.+|+..-..-+.+|+.+|+.+
T Consensus         6 ~gle~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~   48 (52)
T 2kk7_A            6 MGVDKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR   48 (52)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555544     5888888888888888888888888887764

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=90.90  E-value=0.2  Score=35.08  Aligned_cols=46  Identities=20%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK   59 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~   59 (110)
                      =+|+.+|..|+++|+.....-+.+|+.+|..+.+.+..+-+.+...
T Consensus        13 ~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~   58 (198)
T 2dm9_A           13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL   58 (198)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999999999988877776666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.23
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	81.08

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.02  Score=33.99  Aligned_cols=45  Identities=36%  Similarity=0.361  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 038359           12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETE   56 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~e   56 (110)
                      +|-+|-.+|+.||.+|+++..+-+-+||..|..|-+.....-..+
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~e   47 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999998887766554443

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=81.08  E-value=3.4  Score=23.72  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359           13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ   58 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk   58 (110)
                      +-.|.+++..||.+|+..       |+.|+.+=|..-+.+=|.+..
T Consensus        15 i~qA~~ra~qIveeak~~-------A~~Ea~rI~~~A~~eIe~E~~   53 (61)
T d1l2pa_          15 IEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAEIEAERK   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            446888999999888764       555555555555555555444