Citrus Sinensis ID: 038360

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MAGEAPVAAAAAVAATTTTKTTTTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASAPAPAPALAPASEAATKDND
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccEEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHcccccccccccHHHHHccccc
Coil and Loop (DISEMBL)
MAGEAPVAAAAAVAATtttkttttgsieshkknriqvsntkkplFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTstvgmkdenkgrfIQKAKIEIVLGksekfdslmiasapapapalapaseaatkdnd
Flexible Loop (DISEMBL)
MAGEAPVAAAAAvaattttkttttgsieshkknriqvsntkkPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEIlknnglatekkvltstvgmkdenkgrfiqkakIEIVLGKSEKFDSLMIASAPapapalapaseaatkdnd
Low Complexity Region (SEG)
MAGEapvaaaaavaattttkttttGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIasapapapalapaseaaTKDND
Disordered region (IsUnstruct)
****************************************KKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLG********************************
Disordered Region (DISOPRED)
*****************************************KPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLT*****************KIEIVLGKSEKF***************************
Disordered Region (DISEMBL)
*******************************KNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASAPA*****************
Disordered Region (DISPRO)
******************************KKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIAS********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGEAPVAAAAAVAATTTTKTTTTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASAPAPAPALAPASEAATKDND
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
O22969	130	Uncharacterized protein A	no	no	0.684	0.784	0.754	5e-40

>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1

 Score =  162 bits (411), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 90/102 (88%)

Query: 28  ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
           +S KKNRIQVSNTKKPLFFYVNLAKRY+QQ+++VELSALGMAI TVVT+ EILKNNG A 
Sbjct: 16  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAV 75

Query: 88  EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIAS 129
           EKK++TSTV +KD+ +GR +QKAKIEI L KSEKFD LM A+
Sbjct: 76  EKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 117

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
356533643	132	PREDICTED: uncharacterized protein At2g3	0.865	0.977	0.748	7e-50
449443233	143	PREDICTED: uncharacterized protein At2g3	0.684	0.713	0.931	4e-49
255561871	153	conserved hypothetical protein [Ricinus	0.744	0.725	0.831	9e-49
356574884	132	PREDICTED: uncharacterized protein At2g3	0.778	0.878	0.790	3e-48
297833146	164	nucleic acid binding protein [Arabidopsi	0.671	0.609	0.91	2e-47
388512731	128	unknown [Lotus japonicus]	0.684	0.796	0.904	6e-47
15229322	164	Alba DNA/RNA-binding protein [Arabidopsi	0.671	0.609	0.9	6e-47
224131218	148	predicted protein [Populus trichocarpa]	0.697	0.702	0.875	1e-45
225445462	130	PREDICTED: uncharacterized protein At2g3	0.664	0.761	0.848	7e-43
168032972	131	predicted protein [Physcomitrella patens	0.664	0.755	0.828	2e-42

>gi|356533643|ref|XP_003535371.1| PREDICTED: uncharacterized protein At2g34160-like [Glycine max]

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 107/143 (74%), Positives = 115/143 (80%), Gaps = 14/143 (9%)

Query: 7   VAAAAAVAATTTTKTTTTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSAL 66
           +A  AAV A T          +SHKKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSAL
Sbjct: 1   MATVAAVPALTAN--------DSHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 52

Query: 67  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           GMAI TVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR +QKAKIEIVLGKS+KFD+LM
Sbjct: 53  GMAIATVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSDKFDNLM 112

Query: 127 IASAPAPAPALAPASEAATKDND 149
             S PAP      + EAA  D+D
Sbjct: 113 --SPPAP----TESEEAAADDDD 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443233|ref|XP_004139384.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] gi|449532210|ref|XP_004173075.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 99/102 (97%)

Query: 28  ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
           E+ KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLAT
Sbjct: 15  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLAT 74

Query: 88  EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIAS 129
           EKKVLTSTVGMKDENKGR +QKAKIEIVLGKSEKFDSLM A+
Sbjct: 75  EKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAA 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561871|ref|XP_002521944.1| conserved hypothetical protein [Ricinus communis] gi|223538748|gb|EEF40348.1| conserved hypothetical protein [Ricinus communis]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 103/119 (86%), Gaps = 8/119 (6%)

Query: 29  SHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATE 88
             KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLATE
Sbjct: 41  QQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATE 100

Query: 89  KKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASAPAPAPALAPASEAATKD 147
           KKVLTSTVGMKDENKGR +QKAKIEIVLGKSEKFDSLM         A   A+EA T+D
Sbjct: 101 KKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM--------EAANTATEAETQD 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574884|ref|XP_003555573.1| PREDICTED: uncharacterized protein At2g34160-like [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 108/129 (83%), Gaps = 13/129 (10%)

Query: 5   APVAAAAAVAATTTTKTTTTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELS 64
           A VAAA A+ A            +SHKK RIQVSNTKKPLFFYVNLAKRYIQQHDEVELS
Sbjct: 2   ATVAAAPALTAN-----------DSHKKYRIQVSNTKKPLFFYVNLAKRYIQQHDEVELS 50

Query: 65  ALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDS 124
           ALGMAI TVVTI+EILKNNGLATEKKVLTSTVGMKDENKGR +QKAKIEIVLGKS+KFD+
Sbjct: 51  ALGMAIATVVTISEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSDKFDN 110

Query: 125 LMIASAPAP 133
           LM  S PAP
Sbjct: 111 LM--SPPAP 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833146|ref|XP_002884455.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330295|gb|EFH60714.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 98/100 (98%)

Query: 27  IESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLA 86
           +E+HKKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTI+EILKNNGLA
Sbjct: 32  VETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLA 91

Query: 87  TEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           TEKKVLTSTVGMKDE KGR +QKAKIEIVLGKS+KFDSL+
Sbjct: 92  TEKKVLTSTVGMKDETKGRMVQKAKIEIVLGKSDKFDSLV 131

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512731|gb|AFK44427.1| unknown [Lotus japonicus]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 99/105 (94%), Gaps = 3/105 (2%)

Query: 28  ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
           ES KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAI TVVTIAEILKNNGLAT
Sbjct: 13  ESPKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVTIAEILKNNGLAT 72

Query: 88  EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASAPA 132
           EK+VLTSTVGMKDENKGR +QKAKIEIVLGKSEKFD+LM   APA
Sbjct: 73  EKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLM---APA 114

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229322|ref|NP_187113.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana] gi|6175166|gb|AAF04892.1|AC011437_7 unknown protein [Arabidopsis thaliana] gi|38454036|gb|AAR20712.1| At3g04620 [Arabidopsis thaliana] gi|38604012|gb|AAR24749.1| At3g04620 [Arabidopsis thaliana] gi|332640586|gb|AEE74107.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 98/100 (98%)

Query: 27  IESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLA 86
           +E+HKKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTI+EILKNNGLA
Sbjct: 32  VETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLA 91

Query: 87  TEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           TEKKVLTSTVGMKDE KG+ +QKAKIEIVLGKS+KFDSL+
Sbjct: 92  TEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131218|ref|XP_002328484.1| predicted protein [Populus trichocarpa] gi|222838199|gb|EEE76564.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 97/104 (93%)

Query: 23  TTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKN 82
           TT ++   K NRIQVSNTKKPLFFYVNLAKRY+QQ++EVELSALGMAITTVVTIAEILKN
Sbjct: 26  TTTTLAQQKNNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAITTVVTIAEILKN 85

Query: 83  NGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           NGLATEKKVLTSTV MKDENKGR +QKAKIEIVLGKSEKFDSLM
Sbjct: 86  NGLATEKKVLTSTVCMKDENKGRQVQKAKIEIVLGKSEKFDSLM 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445462|ref|XP_002285115.1| PREDICTED: uncharacterized protein At2g34160 [Vitis vinifera] gi|297738936|emb|CBI28181.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 84/99 (84%), Positives = 93/99 (93%)

Query: 28  ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
           +SHKKNRIQVSNTKKPLFFYVNLAKRY+QQH+EVELSALGMAI TVVTIAEILKNNGLA 
Sbjct: 15  DSHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAV 74

Query: 88  EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           EKK++TSTV MKDE++GR IQKAKIEI+LGK+E FD LM
Sbjct: 75  EKKIMTSTVDMKDESRGRPIQKAKIEILLGKTENFDELM 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168032972|ref|XP_001768991.1| predicted protein [Physcomitrella patens subsp. patens] gi|168033024|ref|XP_001769017.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679746|gb|EDQ66189.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679772|gb|EDQ66215.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 92/99 (92%)

Query: 28  ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
           ++HKKNRIQVSNTKKPLFFYVNLAKRY+QQH+EVELSALGMAI TVVT+AEILKNNGLA 
Sbjct: 15  DAHKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAI 74

Query: 88  EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
           EK++LTSTV MKDE +GR IQKAK+EI+LGKSE FD LM
Sbjct: 75  EKRILTSTVDMKDETRGRPIQKAKVEIILGKSEHFDELM 113

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2084873	164	DAN1 "D NUCLDUO1-ACTIVATEEIC A	0.677	0.615	0.891	2.2e-43
TAIR|locus:2029949	130	AT1G29250 [Arabidopsis thalian	0.677	0.776	0.752	1.3e-36
TAIR|locus:2055516	130	AT2G34160 [Arabidopsis thalian	0.664	0.761	0.767	1.2e-35

TAIR|locus:2084873 DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/101 (89%), Positives = 99/101 (98%)

Query:    26 SIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL 85
             ++E+HKKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTI+EILKNNGL
Sbjct:    31 TVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGL 90

Query:    86 ATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
             ATEKKVLTSTVGMKDE KG+ +QKAKIEIVLGKS+KFDSL+
Sbjct:    91 ATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2029949 AT1G29250 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 76/101 (75%), Positives = 91/101 (90%)

Query:    26 SIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL 85
             ++++ KKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct:    14 AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query:    86 ATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
             A EKK++TSTV +KD+++GR +QKAKIEI L KSEKFD LM
Sbjct:    74 AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM 114

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2055516 AT2G34160 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 76/99 (76%), Positives = 88/99 (88%)

Query:    28 ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
             +S KKNRIQVSNTKKPLFFYVNLAKRY+QQ+++VELSALGMAI TVVT+ EILKNNG A 
Sbjct:    16 DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAV 75

Query:    88 EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLM 126
             EKK++TSTV +KD+ +GR +QKAKIEI L KSEKFD LM
Sbjct:    76 EKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELM 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      149       112   0.00091  102 3  10 23  0.50    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  124 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.88u 0.17s 17.05t   Elapsed:  00:00:00
  Total cpu time:  16.88u 0.17s 17.05t   Elapsed:  00:00:00
  Start:  Sat May 11 03:25:08 2013   End:  Sat May 11 03:25:08 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam01918	67	pfam01918, Alba, Alba	4e-09

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 49.9 bits (120), Expect = 4e-09
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 33 NRIQVSNTKKPLFFYVNLAKRYIQQ--HDEVELSALGMAITTVVTIAEILKNNGLAT--E 88
          N I VS+ K P+  YV  A + ++    DEV L  LG AI+  V++AEILK   L    +
Sbjct: 1  NVIYVSS-KSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQ 59

Query: 89 KKVLTSTV 96
            V+TSTV
Sbjct: 60 VNVITSTV 67

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.93
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.92
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.91
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.5
KOG2567	179	consensus Uncharacterized conserved protein [Funct	99.2
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	98.35
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	83.74

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.93  E-value=1.4e-25  Score=163.64  Aligned_cols=85  Identities=35%  Similarity=0.494  Sum_probs=79.6

Q ss_pred             CccEEEEecCCCchhhHHHHHH--HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCee
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAK--RYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRF  106 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk--~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~  106 (149)
                      ++|.|+|++  ||.|||| ||.  +|++|.+||+|+|+|+|||+|||+|||+|+|++  +++++|+++|++++. .+||.
T Consensus         3 ~envV~vG~--KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~-~~gr~   78 (91)
T COG1581           3 EENVVLVGK--KPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEG-EDGRT   78 (91)
T ss_pred             CccEEEEcC--cchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeec-CCCce
Confidence            459999996  9999999 998  788999999999999999999999999999999  999999999999998 58998


Q ss_pred             cccceEEEEEeeC
Q 038360          107 IQKAKIEIVLGKS  119 (149)
Q Consensus       107 ~~vskIEIvL~Ks  119 (149)
                      +++|.|||+|.|.
T Consensus        79 ~~VS~IeI~L~k~   91 (91)
T COG1581          79 RNVSTIEIVLAKK   91 (91)
T ss_pred             eeEEEEEEEEecC
Confidence            8999999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.92  E-value=1.4e-24  Score=157.88  Aligned_cols=83  Identities=39%  Similarity=0.518  Sum_probs=76.0

Q ss_pred             ccEEEEecCCCchhhHHHHHH--HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360           32 KNRIQVSNTKKPLFFYVNLAK--RYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk--~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      +|.|+|++  ||.|+|| +|.  +|++|.++|+|||||+||++||++||+|+||++  +.+++|+++|+.+.+ ++|+..
T Consensus         1 e~~i~vG~--KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~-~~G~~~   76 (87)
T TIGR00285         1 ENVVYIGN--KPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKS-EQGREV   76 (87)
T ss_pred             CCEEEEcC--CcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeec-CCCcee
Confidence            48999996  9999999 666  677789999999999999999999999999987  779999999999988 589998


Q ss_pred             ccceEEEEEee
Q 038360          108 QKAKIEIVLGK  118 (149)
Q Consensus       108 ~vskIEIvL~K  118 (149)
                      ++|+|||+|.|
T Consensus        77 ~VStIEI~l~~   87 (87)
T TIGR00285        77 NVSTIEIVLAK   87 (87)
T ss_pred             eEEEEEEEEeC
Confidence            99999999986

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.91  E-value=2.9e-24  Score=157.19  Aligned_cols=87  Identities=33%  Similarity=0.401  Sum_probs=78.5

Q ss_pred             CCccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCee
Q 038360           30 HKKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRF  106 (149)
Q Consensus        30 ~~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~  106 (149)
                      ..+|.|+|++  ||.|+||..+..+| ++.++|+|||||+||++||+||||||||++  +.+++|.++|+.+.+ ++|+.
T Consensus         2 ~~en~i~Ig~--kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~-~~g~~   78 (91)
T PRK04015          2 AEENVVLVGK--KPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-EDGRE   78 (91)
T ss_pred             CCCCEEEEcC--CcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeec-CCCcE
Confidence            4679999997  79999996666555 578999999999999999999999999988  999999999999988 58888


Q ss_pred             cccceEEEEEeeC
Q 038360          107 IQKAKIEIVLGKS  119 (149)
Q Consensus       107 ~~vskIEIvL~Ks  119 (149)
                      .++|+|||+|+|.
T Consensus        79 ~~VS~IEI~l~k~   91 (91)
T PRK04015         79 SNVSTIEIVLEKK   91 (91)
T ss_pred             EEEEEEEEEEecC
Confidence            8999999999983

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.50  E-value=1.2e-13  Score=93.73  Aligned_cols=60  Identities=38%  Similarity=0.558  Sum_probs=52.5

Q ss_pred             cEEEEecCCCchhhHHHHHHHHh-----ccCCEEEEeecchhHHHHHHHHHHHHhC---CcEEEeEEEe
Q 038360           33 NRIQVSNTKKPLFFYVNLAKRYI-----QQHDEVELSALGMAITTVVTIAEILKNN---GLATEKKVLT   93 (149)
Q Consensus        33 N~I~VS~~KKP~~~YV~lAk~~L-----q~~~eV~LsAlG~AIs~AV~VAEILKrr---gla~ikkI~T   93 (149)
                      |.|+|+. ++|.++||..+..+|     +++++|.|+|+|+||++||.+||+||++   ++.++.++..
T Consensus         1 n~I~V~~-~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSS-NSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-S-TS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECC-CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7899998 569999999999999     7899999999999999999999999999   5788777765

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=2.7e-11  Score=97.68  Aligned_cols=91  Identities=26%  Similarity=0.342  Sum_probs=73.5

Q ss_pred             cCCccEEEEecCCCchhhHHHHHHHHhcc--CCEEEEeecchhHHHHHHHHHHHHhC--CcEEEeEEEeeee-eeccC-C
Q 038360           29 SHKKNRIQVSNTKKPLFFYVNLAKRYIQQ--HDEVELSALGMAITTVVTIAEILKNN--GLATEKKVLTSTV-GMKDE-N  102 (149)
Q Consensus        29 ~~~~N~I~VS~~KKP~~~YV~lAk~~Lq~--~~eV~LsAlG~AIs~AV~VAEILKrr--gla~ikkI~Tst~-~i~~e-~  102 (149)
                      ....|+++|..+.|-+ ||+.+|..+|++  +..|++||+|+||+++|.+|||||||  ||+++++|.--+. +.+.- .
T Consensus        15 pp~a~emrV~~g~kir-N~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~   93 (179)
T KOG2567|consen   15 PPDANEMRVKSGSKIR-NLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTE   93 (179)
T ss_pred             CCCcceEEEccCchHH-HHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccc
Confidence            3567889999988777 999999999986  79999999999999999999999999  8888888875433 33321 2


Q ss_pred             CC-----eecccceEEEEEeeCc
Q 038360          103 KG-----RFIQKAKIEIVLGKSE  120 (149)
Q Consensus       103 ~G-----r~~~vskIEIvL~Ks~  120 (149)
                      +|     -.++||.|-|.|.+.+
T Consensus        94 eGl~pl~vtRhVp~l~IlLS~de  116 (179)
T KOG2567|consen   94 EGLEPLEVTRHVPMLHILLSLDE  116 (179)
T ss_pred             cCccceEEeeccceEEEEEeccc
Confidence            33     2457999999999853

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=98.35  E-value=1.6e-06  Score=67.93  Aligned_cols=67  Identities=25%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhcc---------------------------------CCEEEEeecchhHHHHHHHHH
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQQ---------------------------------HDEVELSALGMAITTVVTIAE   78 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~---------------------------------~~eV~LsAlG~AIs~AV~VAE   78 (149)
                      ++.|+||+ +-|.|.+|.=...||.+                                 .++|.|+|||+||.+|+.++.
T Consensus         3 ~~~iyVss-~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~   81 (144)
T PF12328_consen    3 PKVIYVSS-KTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL   81 (144)
T ss_dssp             TTEEE--S-S--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred             CcEEEEec-CCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence            57899998 55999888777777731                                 179999999999999999999


Q ss_pred             HHHhCCcEEEeEEEeeeeeecc
Q 038360           79 ILKNNGLATEKKVLTSTVGMKD  100 (149)
Q Consensus        79 ILKrrgla~ikkI~Tst~~i~~  100 (149)
                      -++++. .-...|.|+|+.+-|
T Consensus        82 ~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   82 WFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             HHHHTT----EEEEEEEEEEEE
T ss_pred             HHhhcC-CeEEEEEeceEEEEE
Confidence            999885 445678888886544

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=83.74  E-value=4.3  Score=29.72  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             cEEEEecCCCchhhHHHHHHHHhccCCEEEEeecch-hHHHHHHHHHHHH
Q 038360           33 NRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGM-AITTVVTIAEILK   81 (149)
Q Consensus        33 N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~-AIs~AV~VAEILK   81 (149)
                      +.+.||++.+|. ...---...|.+++.|+|.|.|- |++.||...-|-+
T Consensus         2 e~LKVSs~S~p~-~vAgAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR   50 (86)
T PF04232_consen    2 EVLKVSSKSNPN-AVAGAIAGVLREGGKVELQAIGAGAVNQAVKAIAIAR   50 (86)
T ss_dssp             -EEEE-TT--HH-HHHHHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHH-HHHHHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHH
Confidence            468999987887 22211115667788999999998 8999998877764

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
1vm0_A	130	X-Ray Structure Of Gene Product From Arabidopsis Th		3e-37

>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g34160 Length = 130

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 84/100 (84%)
Query: 26  SIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL 85
           + +S KKNRIQVSNTKKPLFFYVNLAKRY QQ+++VELSALG AI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGF 73
Query: 86  ATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSL 125
           A EKK+ TS V +KD+ +GR +QKAKIEI L KSEKFD L
Sbjct: 74  AVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDEL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1vm0_A	130	Unknown protein; structural genomics, protein stru	5e-38
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	1e-05
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	6e-05
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	7e-05
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	2e-04
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	6e-04

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score =  125 bits (313), Expect = 5e-38
 Identities = 76/105 (72%), Positives = 90/105 (85%)

Query: 26  SIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL 85
           + +S KKNRIQVSNTKKPLFFYVNLAKRY+QQ+++VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 86  ATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIASA 130
           A EKK++TS V +KD+ +GR +QKAKIEI L KSEKFD LM A+ 
Sbjct: 74  AVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN 118

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1 Length = 87

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 40  TKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKN--NGLATEKKVLTSTVG 97
            KKP+  YV      +  +DEV + A G AI   V +AE+++N        KK+   T  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 98  MKDENKGRFIQKAKIEIVLGK 118
           +K+ + GR +  + IEIVL K
Sbjct: 68  VKNPD-GREVNVSTIEIVLAK 87

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 91

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 40  TKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKN---NGLATEKKVLTST 95
             KP+  YV      +     EV L A G+AI+  V +AEI++N     +  E   + + 
Sbjct: 10  GNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTE 69

Query: 96  VGMKDENKGRFIQKAKIEIVLGK 118
             + +E     +  + IEI L K
Sbjct: 70  EIIGNEGTATNV--SAIEIQLRK 90

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A* Length = 89

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 40  TKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKN---NGLATEKKVLTST 95
             KP+  YV      + +  DEV + A G AI+  V +AEI++N    G+  ++  + + 
Sbjct: 9   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 68

Query: 96  VGMKDENKGRFIQKAKIEIVLGK 118
               ++ +   +  + IEIVL K
Sbjct: 69  ELESEQGRRSNV--STIEIVLAK 89

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A Length = 97

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 40  TKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVG- 97
            KKP+  YV  A   + Q   E+ + A G AI+  V   EI++N  L  + ++    VG 
Sbjct: 15  GKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGS 74

Query: 98  -MKDENKGRFIQKAKIEIVLGK 118
            +     GR  + + IEI + K
Sbjct: 75  QVVTSQDGRQSRVSTIEIAIRK 96

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A* Length = 102

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 40  TKKPLFFYVNLAKRYIQQ--HDEVELSALGMAITTVVTIAEILKN--NGLATEKKVLTST 95
            +KP+  YV      + +   ++V + A G  I   V   EI++         K +   +
Sbjct: 12  GRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDS 71

Query: 96  VGMKDE---NKGRFIQKAKIEIVLGKSEK 121
             ++ +    + R  + + IEI L K+ +
Sbjct: 72  QEIEVQTPEGQTRTRRVSSIEICLEKAGE 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
1vm0_A	130	Unknown protein; structural genomics, protein stru	100.0
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.91
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.89
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.89
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.86
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	98.48

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=100.00  E-value=6.2e-39  Score=246.04  Aligned_cols=110  Identities=70%  Similarity=0.944  Sum_probs=91.9

Q ss_pred             ccCCccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeeeccCCCCeec
Q 038360           28 ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        28 ~~~~~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      ..+++|+|+||++|||+||||+++++||+++++|+|||||+||++||+|||||||||++++++|.|+|+++.++.+||++
T Consensus        16 ~~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v   95 (130)
T 1vm0_A           16 DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPV   95 (130)
T ss_dssp             ---CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CE
T ss_pred             CCCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCccc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999987678999


Q ss_pred             ccceEEEEEeeCcchHHHhhhcCCCCCCCC
Q 038360          108 QKAKIEIVLGKSEKFDSLMIASAPAPAPAL  137 (149)
Q Consensus       108 ~vskIEIvL~Ks~~Fd~~~~~~~~~~~~~~  137 (149)
                      ++|+|||+|+|+++||++|++++++++.+.
T Consensus        96 ~~skIEI~L~k~~~fd~~~~~~~~~~~~~~  125 (130)
T 1vm0_A           96 QKAKIEITLVKSEKFDELMAAANEEKEDAE  125 (130)
T ss_dssp             EEEEEEEEEEECTTHHHHHHHC--------
T ss_pred             ccceEEEEEEecCcHHHHHHHhhhhhcccc
Confidence            999999999999999999999999887643

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=1.4e-24  Score=158.57  Aligned_cols=90  Identities=26%  Similarity=0.329  Sum_probs=77.5

Q ss_pred             cccCCccEEEEecCCCchhhHHHHHHHHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc---EEEeEEEeeeeeeccCC
Q 038360           27 IESHKKNRIQVSNTKKPLFFYVNLAKRYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL---ATEKKVLTSTVGMKDEN  102 (149)
Q Consensus        27 ~~~~~~N~I~VS~~KKP~~~YV~lAk~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl---a~ikkI~Tst~~i~~e~  102 (149)
                      .....+|.|+|++  ||.|+||.++..+|+ |+++|+|||+|+||++||+||||||||++   ..+++|+++|+.+.++ 
T Consensus         4 ~~~~~~n~I~V~~--k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-   80 (97)
T 2bky_A            4 GTPTPSNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-   80 (97)
T ss_dssp             -----CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-
T ss_pred             ccCCCCCEEEEcC--cCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-
Confidence            3456789999996  899999999987664 58999999999999999999999999987   4589999999999884 


Q ss_pred             CCeecccceEEEEEeeC
Q 038360          103 KGRFIQKAKIEIVLGKS  119 (149)
Q Consensus       103 ~Gr~~~vskIEIvL~Ks  119 (149)
                      +|+.+++|.|||+|.|.
T Consensus        81 ~G~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           81 DGRQSRVSTIEIAIRKK   97 (97)
T ss_dssp             TSCEEEEEEEEEEEEEC
T ss_pred             CCcEEEeeEEEEEEEcC
Confidence            79888999999999874

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=1.9e-24  Score=154.88  Aligned_cols=84  Identities=33%  Similarity=0.461  Sum_probs=70.7

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeeccc
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFIQK  109 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~~v  109 (149)
                      +|.|+|++  ||.|+||.++..+|+++++|+|||||+||++||+||||||+|++  ..+++|+++|+.+.++ +|+.+++
T Consensus         2 ~n~I~V~~--k~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v   78 (87)
T 1nh9_A            2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEeC--cchHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence            69999997  59999999898766655999999999999999999999999986  6789999999999984 7888899


Q ss_pred             ceEEEEEee
Q 038360          110 AKIEIVLGK  118 (149)
Q Consensus       110 skIEIvL~K  118 (149)
                      |.|||+|.|
T Consensus        79 S~IeI~L~k   87 (87)
T 1nh9_A           79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999986

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.91  E-value=2.2e-24  Score=155.17  Aligned_cols=85  Identities=34%  Similarity=0.456  Sum_probs=76.8

Q ss_pred             CccEEEEecCCCchhhHHHHHHHHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAKRYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      .+|.|+|++  ||.|+||.++..+|+ |+++|+|||||+||++||++|||||+|++  +.+++|+++|+.+.++ +|+.+
T Consensus         2 ~~n~I~V~~--k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r   78 (89)
T 1nfj_A            2 AEHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS   78 (89)
T ss_dssp             -CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred             CCCEEEEcC--CCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence            479999996  899999999987665 58999999999999999999999999986  6789999999999884 78888


Q ss_pred             ccceEEEEEee
Q 038360          108 QKAKIEIVLGK  118 (149)
Q Consensus       108 ~vskIEIvL~K  118 (149)
                      ++|.|||+|.|
T Consensus        79 ~vs~IeI~L~k   89 (89)
T 1nfj_A           79 NVSTIEIVLAK   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999986

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.89  E-value=2.8e-23  Score=152.98  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             ccEEEEecCCCchhhHHHHHH-HHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccC-CCCe-
Q 038360           32 KNRIQVSNTKKPLFFYVNLAK-RYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDE-NKGR-  105 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk-~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e-~~Gr-  105 (149)
                      +|.|+|++  ||.|+||.++. .+|+ ++++|+|||||+||++||+||||||||++  +.+++|+++|+.+.++ .+|+ 
T Consensus         6 ~n~I~V~~--k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~   83 (102)
T 2h9u_A            6 APEVRIGR--KPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT   83 (102)
T ss_dssp             CCEEECCS--SCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred             CCEEEEcC--CCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence            69999997  89999999998 7775 48999999999999999999999999987  6779999999999884 1576 


Q ss_pred             -ecccceEEEEEeeCcc
Q 038360          106 -FIQKAKIEIVLGKSEK  121 (149)
Q Consensus       106 -~~~vskIEIvL~Ks~~  121 (149)
                       .+++|.|||+|.|.|+
T Consensus        84 ~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           84 RTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             EEEEEEEEEEEEEECSS
T ss_pred             ceeEeeeEEEEEEccCC
Confidence             7899999999999875

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.89  E-value=2.4e-23  Score=151.24  Aligned_cols=85  Identities=31%  Similarity=0.387  Sum_probs=76.3

Q ss_pred             CccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      ++|.|+|++  ||.|+||..+..+| +|+++|+|+|+|+||++||+||||||+|++  ..+++|+++|+.+.+ ++|+.+
T Consensus         3 ~~~vv~vg~--Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~-e~G~~r   79 (91)
T 3toe_A            3 EENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIG-NEGTAT   79 (91)
T ss_dssp             --CCEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEEC-TTSSEE
T ss_pred             ccCEEEECC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeec-CCCcee
Confidence            478999996  99999997777655 578999999999999999999999999988  999999999999987 488888


Q ss_pred             ccceEEEEEee
Q 038360          108 QKAKIEIVLGK  118 (149)
Q Consensus       108 ~vskIEIvL~K  118 (149)
                      ++|.|||+|.|
T Consensus        80 ~VS~IeI~L~k   90 (91)
T 3toe_A           80 NVSAIEIQLRK   90 (91)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999987

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.86  E-value=1.1e-21  Score=141.44  Aligned_cols=83  Identities=19%  Similarity=0.032  Sum_probs=71.7

Q ss_pred             cCCccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCe
Q 038360           29 SHKKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGR  105 (149)
Q Consensus        29 ~~~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr  105 (149)
                      .+++|.|+|++  ||.|+||..+..+| ++.++|+|||||+||++||++|||||+|++  +.+++|+++++.      |+
T Consensus         3 ~~~~~iv~vg~--kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~   74 (89)
T 2bky_X            3 EKLNEIVVRKT--KNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RD   74 (89)
T ss_dssp             -CCEEEECCTT--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ET
T ss_pred             CCCCCEEEECC--CCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Cc
Confidence            47889999996  79999997776544 568999999999999999999999999977  899999999885      34


Q ss_pred             ecccceEEEEEeeC
Q 038360          106 FIQKAKIEIVLGKS  119 (149)
Q Consensus       106 ~~~vskIEIvL~Ks  119 (149)
                      .+++|.|||+|.|.
T Consensus        75 ~r~VS~IeI~L~k~   88 (89)
T 2bky_X           75 RRRISYILLRLKRV   88 (89)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             ceEeeeEEEEEEec
Confidence            45789999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.48  E-value=5.9e-07  Score=69.54  Aligned_cols=70  Identities=14%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             cCCccEEEEecCCCchhhHHHHHHHHhc-----cCCEEEEeecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeeecc
Q 038360           29 SHKKNRIQVSNTKKPLFFYVNLAKRYIQ-----QHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKD  100 (149)
Q Consensus        29 ~~~~N~I~VS~~KKP~~~YV~lAk~~Lq-----~~~eV~LsAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i~~  100 (149)
                      ..-+|.|+|++ +-|.+.=+.=..+||+     +..+|.|+|||+||.+++.+|--+++++- ..-.|.|+|+.+-|
T Consensus        27 ~~~~~~iYV~s-kTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD  101 (140)
T 3iab_B           27 KQIHTTIFVKS-TTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD  101 (140)
T ss_dssp             HHHTTEEECCS-SCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred             cccCceEEEec-CCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence            33589999998 4477655544447886     47999999999999999999999999853 44568888886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	9e-37
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	2e-17
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	3e-15
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	6e-06
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-05

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (300), Expect = 9e-37
 Identities = 75/99 (75%), Positives = 87/99 (87%)

Query: 31  KKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKK 90
           KKNRIQVSNTKKPLFFYVNLAKRY+QQ+++VELSALGMAI TVVT+ EILKNNG A EKK
Sbjct: 1   KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKK 60

Query: 91  VLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIAS 129
           ++TS V +KD+ +GR +QKAKIEI L KSEKFD LM A+
Sbjct: 61  IMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 99

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 70.1 bits (172), Expect = 2e-17
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 40  TKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKN---NGLATEKKVLTSTV 96
            KKP+  YV      +  +DEV + A G AI   V +AE+++N     +  +K  + +  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 97  GMKDENKGRFIQKAKIEIVLGK 118
               + +      + IEIVL K
Sbjct: 68  VKNPDGREV--NVSTIEIVLAK 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 64.4 bits (157), Expect = 3e-15
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 40  TKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKN---NGLATEKKVLTST 95
             KP+  YV      + +  DEV + A G AI+  V +AEI++N    G+  ++  + + 
Sbjct: 7   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 66

Query: 96  VGMKDENKGRFIQKAKIEIVLGK 118
               ++ +   +  + IEIVL K
Sbjct: 67  ELESEQGRRSNV--STIEIVLAK 87

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 40.1 bits (94), Expect = 6e-06
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 40  TKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKNNGLATEKKV----LTS 94
            KKP+  YV  A   + Q   E+ + A G AI+  V   EI++N  L  + ++    + S
Sbjct: 7   GKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGS 66

Query: 95  TVGMKDENKGRFIQKAKIEIVLGK 118
            V    + +   +  + IEI + K
Sbjct: 67  QVVTSQDGRQSRV--STIEIAIRK 88

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 31  KKNRIQVSNTKKPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKNNGLATEK 89
           K N I V    K +  +V        Q  DEV L   G  I+  V +   LK+       
Sbjct: 1   KLNEIVVR-KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDR---LGD 56

Query: 90  KVLTSTVGMKDENKGRFIQKAKIEIVLGK 118
            V    V    E      + + I + L +
Sbjct: 57  GVQLVNVQTGSE-VRDRRRISYILLRLKR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	100.0
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.92
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.91
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.89
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.85

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-37  Score=227.92  Aligned_cols=99  Identities=76%  Similarity=1.036  Sum_probs=90.4

Q ss_pred             CccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeeeccCCCCeecccc
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKA  110 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i~~e~~Gr~~~vs  110 (149)
                      ++|+|+||++|||.||||++++.||+++++|+|||||+||++||+|||+|+|||++++++|+|+++++.++.+|+++++|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~~gr~~~vs   80 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKA   80 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEE
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCCCCcccccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999987789999999


Q ss_pred             eEEEEEeeCcchHHHhhhc
Q 038360          111 KIEIVLGKSEKFDSLMIAS  129 (149)
Q Consensus       111 kIEIvL~Ks~~Fd~~~~~~  129 (149)
                      +|||+|.|+|+||+||+++
T Consensus        81 ~IEI~L~K~~~F~~~~~~~   99 (99)
T d1vm0a_          81 KIEITLVKSEKFDELMAAA   99 (99)
T ss_dssp             EEEEEEEECTTHHHHHHHC
T ss_pred             eEEEEEeeCccHHHHhhcC
Confidence            9999999999999999863

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=3.3e-25  Score=158.07  Aligned_cols=84  Identities=33%  Similarity=0.459  Sum_probs=70.9

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeeccc
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFIQK  109 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~~v  109 (149)
                      +|.|+|++  ||+|+||..+..+|+++++|+|||||+||++||+|||+||||++  +.+++|+++++.+.+ ++|+.+++
T Consensus         2 en~I~Ig~--KP~m~YV~~~~~~~~~~~eV~lKArG~aIsrAVdVaEiik~R~~~~~~i~~i~i~se~~~~-~~g~~r~V   78 (87)
T d1nh9a_           2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-PDGREVNV   78 (87)
T ss_dssp             CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEcC--CCHHHHHHHHHHHhccCCeEEEEEcchhhhHHHHHHHHHHHhccCCeEEEEEEecceEEec-CCCceeEE
Confidence            79999985  89999998888777777999999999999999999999999844  899999999998877 47888899


Q ss_pred             ceEEEEEee
Q 038360          110 AKIEIVLGK  118 (149)
Q Consensus       110 skIEIvL~K  118 (149)
                      |.|||.|.|
T Consensus        79 S~IeI~L~k   87 (87)
T d1nh9a_          79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999986

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=7.7e-25  Score=155.90  Aligned_cols=84  Identities=33%  Similarity=0.452  Sum_probs=75.9

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeecc
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFIQ  108 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~~  108 (149)
                      +|.|+|++  ||.|+||..+..+|+ +.++|+|||||+||++||+|||+||||++  ..+++|.++++.+.+ ++|+.++
T Consensus         1 en~I~Ig~--Kp~~~YV~~~~~~l~~g~~eV~ikArG~aIs~AVdVaEi~k~r~~~~~~i~~i~i~se~~~~-e~g~~r~   77 (87)
T d1nfja_           1 EHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-EQGRRSN   77 (87)
T ss_dssp             CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-BTTBCCE
T ss_pred             CCEEEEcC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEEccEEEec-CCCceeE
Confidence            68999997  899999988887774 68999999999999999999999999855  889999999999877 4788788


Q ss_pred             cceEEEEEee
Q 038360          109 KAKIEIVLGK  118 (149)
Q Consensus       109 vskIEIvL~K  118 (149)
                      +|+|||+|.|
T Consensus        78 VS~IeI~L~K   87 (87)
T d1nfja_          78 VSTIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999999987

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.89  E-value=4e-23  Score=147.76  Aligned_cols=85  Identities=28%  Similarity=0.372  Sum_probs=75.6

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc---EEEeEEEeeeeeeccCCCCeec
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL---ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl---a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      .|.|+|++  ||.|+||..+..+| +|.++|+|+|||+||++||+|||++|||+|   ..+++|.++++.+.+ .+|+.+
T Consensus         1 ~n~I~IG~--Kp~mnYV~a~~~~l~~g~~~V~iKArG~aIskAVdVaEiik~R~l~~~~~i~~i~I~se~~~~-~~G~~r   77 (89)
T d2bkya1           1 SNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS-QDGRQS   77 (89)
T ss_dssp             CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE-TTSCEE
T ss_pred             CCEEEECC--CcHHHHHHHHHHHHhCCCCeEEEEEehhhhHHHHHHHHHHHHhcccCceEEEEEEeccEEeec-CCCcEE
Confidence            38899995  89999997666655 468999999999999999999999999976   778999999999888 488888


Q ss_pred             ccceEEEEEeeC
Q 038360          108 QKAKIEIVLGKS  119 (149)
Q Consensus       108 ~vskIEIvL~Ks  119 (149)
                      ++|.|||.|.|.
T Consensus        78 ~VS~IeI~L~kk   89 (89)
T d2bkya1          78 RVSTIEIAIRKK   89 (89)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEcC
Confidence            999999999983

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.85  E-value=1.4e-21  Score=139.07  Aligned_cols=82  Identities=24%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             CccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      +.|.|++.. +||.|+||..+..+| +|.++|+|+|+|+||++||+|||+++||++  +.+++|.++|++      |+.+
T Consensus         1 k~nei~~~~-~kp~~nYV~a~i~~f~~g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~sE~------~~~r   73 (86)
T d2bkyx1           1 KLNEIVVRK-TKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRR   73 (86)
T ss_dssp             CCEEEECCT-TSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTE
T ss_pred             CCceEEEEc-CCchHHHHHHHHHHHHCCCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecccc------CCce
Confidence            468888887 569999997777555 778999999999999999999999999954  999999999873      3344


Q ss_pred             ccceEEEEEeeC
Q 038360          108 QKAKIEIVLGKS  119 (149)
Q Consensus       108 ~vskIEIvL~Ks  119 (149)
                      ++|.|||.|+|.
T Consensus        74 ~VS~IeI~l~k~   85 (86)
T d2bkyx1          74 RISYILLRLKRV   85 (86)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEec
Confidence            789999999984