Citrus Sinensis ID: 038369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDHFL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHEEEcccccccccccHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccc
Coil and Loop (DISEMBL)
MSAMIIASWFIVIGQFVYLfggwcpntwkgfssaafadLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAasgyvskndhfl
Flexible Loop (DISEMBL)
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASgyvskndhfl
Low Complexity Region (SEG)
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDHFL
Disordered region (IsUnstruct)
***MIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYV*******
Disordered Region (DISOPRED)
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND***
Disordered Region (DISEMBL)
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDHFL
Disordered Region (DISPRO)
*SAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKN****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDHFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.765	0.167	0.4	8e-15
Q9LUH3	469	MATE efflux family protei	no	no	0.747	0.176	0.421	2e-10
Q9LUH2	477	MATE efflux family protei	no	no	0.747	0.174	0.397	1e-09
Q9SIA5	476	MATE efflux family protei	no	no	0.783	0.182	0.366	1e-05
Q9SIA3	476	MATE efflux family protei	no	no	0.882	0.205	0.282	2e-05
Q9SIA4	476	MATE efflux family protei	no	no	0.882	0.205	0.303	0.0003
Q8GXM8	476	MATE efflux family protei	no	no	0.684	0.159	0.346	0.0004

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%)

Query: 24  CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSIC 83
           C  TW GFS+ AF  ++P  KL+++S VM+CLE WYN  LV+++G + N TI + + SIC
Sbjct: 258 CKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISIC 317

Query: 84  LNIISWEFMLVFGFLAASGYVSKND 108
           +  ++W+   + G  AA      N+
Sbjct: 318 MYYLNWDMQFMLGLSAAISVRVSNE 342

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%)

Query: 26  NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLN 85
            TW GFS  +F  +   L LSI S  M+CLE+W   +LV LAG M+N  I  S  +IC+N
Sbjct: 240 ETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLAGLMRNPEITTSLVAICVN 299

Query: 86  IISWEFMLVFGFLAASGYVSKND 108
             S  +ML  G  AA+     N+
Sbjct: 300 TESISYMLTCGLSAATSTRVSNE 322

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%)

Query: 26  NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLN 85
            TW GFS  +F  +   L LS+ S  M+CLE+W   +LV LAG M N  I  S  +IC+N
Sbjct: 248 ETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAICVN 307

Query: 86  IISWEFMLVFGFLAASGYVSKND 108
             +  +ML +G  AA+     N+
Sbjct: 308 TEAISYMLTYGLSAAASTRVSNE 330

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 20  FGGWCPNTWKGFSSAAF-ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS 78
           F   C  T +GF S  F + +    +  I S  MICLE+W   +L+L +G + N  +E S
Sbjct: 230 FSSSCEKT-RGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETS 288

Query: 79  SFSICLNIISWEFMLVFGFLAA-SGYVSKN 107
             SICL I +  +++  G  AA S  VS N
Sbjct: 289 VLSICLTIETLHYVISAGVAAAVSTRVSNN 318

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 3   AMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
           A+ ++ WF  +    Y+ F   C  T +  S    + +    +  + S  M+CLE+W   
Sbjct: 212 AISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFE 271

Query: 62  LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
           LL+L +G ++N  +E S  SICL   +  +++  G  AA
Sbjct: 272 LLILCSGLLQNPKLETSVLSICLTTATLHYVIPVGVAAA 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 3   AMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
           A+ ++ WF V+    Y+ +   C  T    SS   + +       + S  M+CLE+W   
Sbjct: 212 AISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFE 271

Query: 62  LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
           LL+L +G + N  +E S  SICL   S  +++  G  AA
Sbjct: 272 LLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVAAA 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 24  CPNTWKGFSSAAF-ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSI 82
           C  T +GF S  F + +    +  + S  +ICLE+W   LL+L +G + N  +E S  SI
Sbjct: 234 CEKT-RGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSI 292

Query: 83  CLNIISWEFMLVFGFLAA 100
           CL I +  +++  G  AA
Sbjct: 293 CLTIGTLHYVIPSGVAAA 310

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
255580256	484	multidrug resistance pump, putative [Ric	0.972	0.223	0.703	2e-37
224126041	458	predicted protein [Populus trichocarpa]	0.972	0.235	0.685	4e-37
224126037	458	predicted protein [Populus trichocarpa]	0.972	0.235	0.657	2e-36
171854665	485	putative MATE family transporter [Capsic	0.972	0.222	0.657	3e-36
255580260	473	multidrug resistance pump, putative [Ric	0.972	0.228	0.648	6e-36
225439162	485	PREDICTED: protein TRANSPARENT TESTA 12-	0.972	0.222	0.620	4e-35
296085875	416	unnamed protein product [Vitis vinifera]	0.972	0.259	0.620	6e-35
224136940	460	predicted protein [Populus trichocarpa]	0.972	0.234	0.629	9e-35
224136936	469	predicted protein [Populus trichocarpa]	0.972	0.230	0.638	1e-34
255580258	487	multidrug resistance pump, putative [Ric	0.972	0.221	0.648	2e-34

>gi|255580256|ref|XP_002530958.1| multidrug resistance pump, putative [Ricinus communis] gi|223529473|gb|EEF31430.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 90/108 (83%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           MSAM I+SW IV G  VY+ GGWCP+TW GFSSAAF+DL P++KLSISSGVM+CLEFWYN
Sbjct: 209 MSAMGISSWSIVFGTIVYVTGGWCPDTWNGFSSAAFSDLVPMIKLSISSGVMLCLEFWYN 268

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           A+LVLLAG+MKNAT E+S+ SICLN+  WEFML FGFLA+S     N+
Sbjct: 269 AVLVLLAGYMKNATTEVSALSICLNVSGWEFMLCFGFLASSSVRVANE 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126041|ref|XP_002319741.1| predicted protein [Populus trichocarpa] gi|222858117|gb|EEE95664.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 90/108 (83%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A  I+SW +VIG+FVY+FGGWCPNTWKGF+ AAFAD+ P++KLSISSGVMICLE WY+
Sbjct: 206 MGAFSISSWLLVIGEFVYIFGGWCPNTWKGFTKAAFADMLPLIKLSISSGVMICLELWYS 265

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           ++LVLLAG+MKNATI IS+FSICLNI  WEFM+  GFL +S     N+
Sbjct: 266 SILVLLAGYMKNATIAISAFSICLNINGWEFMVCLGFLGSSCVRISNE 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126037|ref|XP_002319740.1| predicted protein [Populus trichocarpa] gi|222858116|gb|EEE95663.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 91/108 (84%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           MSA II++W +VIG+FVY+FGGWCP+TWKGF+ AAFAD+ P++KLS+SSGVMICLEFWY 
Sbjct: 206 MSAFIISAWLLVIGEFVYIFGGWCPHTWKGFTKAAFADMLPLVKLSLSSGVMICLEFWYT 265

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           ++LVLLAG+MKNAT+ IS+FSIC+NI   +FM+  GFL AS     N+
Sbjct: 266 SILVLLAGYMKNATVAISAFSICINIYGCDFMICLGFLGASSVRVSNE 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854665|dbj|BAG16522.1| putative MATE family transporter [Capsicum chinense]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 89/108 (82%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A+ I+SWF+V+G+FVY+FGGWCPNTWKGF+ AA  D+ PV+KLSISSGVM+CLE WYN
Sbjct: 211 MIALSISSWFVVVGEFVYIFGGWCPNTWKGFTLAALKDILPVVKLSISSGVMVCLELWYN 270

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           ++LVLLAG+MKNA + IS+FSICLNI  WEFM+  GFL A+     N+
Sbjct: 271 SVLVLLAGYMKNAAVAISAFSICLNINGWEFMISLGFLGAACVRVANE 318

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580260|ref|XP_002530960.1| multidrug resistance pump, putative [Ricinus communis] gi|223529475|gb|EEF31432.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 89/108 (82%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M AMI ++W I+IG+  Y+ GGWCP+TWKGF+ AAF+DL+PVLKLSISSG+M+CLE WYN
Sbjct: 206 MWAMIASTWLILIGEVAYVIGGWCPDTWKGFTLAAFSDLFPVLKLSISSGLMLCLELWYN 265

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           A+LVL+AG+MKNAT EIS+FSICLN+ +W+FML  GFLA       N+
Sbjct: 266 AVLVLMAGYMKNATTEISAFSICLNVTAWDFMLCVGFLAGISVRVANE 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439162|ref|XP_002267923.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 90/108 (83%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A+II+SW ++IG+F+Y+FGGWCP TW GFS AAF+D+ PV+KLSISSG M+CLE WYN
Sbjct: 210 MGALIISSWSMIIGEFIYIFGGWCPQTWSGFSKAAFSDILPVVKLSISSGFMLCLELWYN 269

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           A+++LLAG++KNA++ IS+FSICLNI +WEFM+  GFL+ S     N+
Sbjct: 270 AIILLLAGYLKNASVAISAFSICLNINAWEFMIALGFLSGSCVRVSNE 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085875|emb|CBI31199.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 90/108 (83%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A+II+SW ++IG+F+Y+FGGWCP TW GFS AAF+D+ PV+KLSISSG M+CLE WYN
Sbjct: 141 MGALIISSWSMIIGEFIYIFGGWCPQTWSGFSKAAFSDILPVVKLSISSGFMLCLELWYN 200

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           A+++LLAG++KNA++ IS+FSICLNI +WEFM+  GFL+ S     N+
Sbjct: 201 AIILLLAGYLKNASVAISAFSICLNINAWEFMIALGFLSGSCVRVSNE 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136940|ref|XP_002322454.1| predicted protein [Populus trichocarpa] gi|222869450|gb|EEF06581.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 88/108 (81%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A+ I++W +VIG  VY+FGGWCPNTWKGF+ AAFAD+ PV+KLSISSG MICLE WYN
Sbjct: 194 MGALTISTWSLVIGLLVYIFGGWCPNTWKGFTKAAFADILPVVKLSISSGFMICLEIWYN 253

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           ++++L AG++KNAT  IS+FS+C NI++WEFML FGFL A+     N+
Sbjct: 254 SIIILAAGYVKNATTAISAFSLCQNILTWEFMLSFGFLGAACVRVANE 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136936|ref|XP_002322453.1| predicted protein [Populus trichocarpa] gi|222869449|gb|EEF06580.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 87/108 (80%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           M A+ I++W +VIG  VY+FGGWCPNTWKGF+ AAFAD+ PV+KLSISSG MICLE WYN
Sbjct: 191 MGALTISTWSLVIGLLVYIFGGWCPNTWKGFTKAAFADILPVVKLSISSGFMICLEIWYN 250

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           ++++L AG+MKNAT  IS+FSIC NI++WEFML  GFL A+     N+
Sbjct: 251 SIIILAAGYMKNATTAISAFSICHNILAWEFMLSVGFLGAACVRVANE 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580258|ref|XP_002530959.1| multidrug resistance pump, putative [Ricinus communis] gi|223529474|gb|EEF31431.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 85/108 (78%)

Query: 1   MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
           MSAMII+ W I+IG  VY+F GWCPN+W+GFS AAF+DL P +KLSISSGVM+CLE WYN
Sbjct: 208 MSAMIISYWSIIIGTLVYVFCGWCPNSWRGFSLAAFSDLAPAIKLSISSGVMLCLELWYN 267

Query: 61  ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
           A+LVLLAG+MKNAT ++S+ SICLNI  WE ML F FL +      N+
Sbjct: 268 AVLVLLAGYMKNATTQVSALSICLNITGWEMMLCFAFLTSCTVRISNE 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2175916	497	AT5G17700 "AT5G17700" [Arabido	0.864	0.193	0.593	2.3e-30
TAIR|locus:2096379	500	AT3G03620 "AT3G03620" [Arabido	0.864	0.192	0.614	4.2e-30
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.972	0.218	0.472	4.1e-25
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.972	0.218	0.481	8.9e-25
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.900	0.202	0.49	1.9e-24
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.900	0.200	0.455	5.4e-22
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.882	0.180	0.474	1.9e-21
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.900	0.2	0.435	1.1e-20
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.828	0.176	0.467	3.6e-20
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.954	0.218	0.448	1.3e-19

TAIR|locus:2175916 AT5G17700 "AT5G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 57/96 (59%), Positives = 77/96 (80%)

Query:     6 IASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVL 65
             I+SW + I +FVY+FGGWCP+TW GFS+AAF DL P+LKLSISSG M+CLE+WY +++VL
Sbjct:   222 ISSWSVAIAEFVYVFGGWCPHTWTGFSTAAFLDLIPMLKLSISSGFMLCLEYWYMSIIVL 281

Query:    66 LAGHMKNATIEISSFSICLNIISWEFMLVFGFLAAS 101
             ++G+ K+A I IS+FSIC  I SWE  + FG + A+
Sbjct:   282 MSGYAKDANIAISAFSICQYIYSWEMNICFGLMGAA 317

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096379 AT3G03620 "AT3G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.2e-30, P = 4.2e-30
 Identities = 59/96 (61%), Positives = 75/96 (78%)

Query:     6 IASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVL 65
             + SW +V+ +FVY+FGGWCP TW GFS AAF DL P+LKLSISSG MICLE+WY ++LVL
Sbjct:   225 VGSWAMVLAEFVYIFGGWCPFTWTGFSIAAFVDLIPMLKLSISSGFMICLEYWYMSILVL 284

Query:    66 LAGHMKNATIEISSFSICLNIISWEFMLVFGFLAAS 101
             +AG+ K+A I IS+FSIC  I +WE  +  GFL A+
Sbjct:   285 MAGYTKDAKIAISAFSICQYIYTWELNICLGFLGAA 320

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 51/108 (47%), Positives = 77/108 (71%)

Query:     1 MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
             M++ ++A W   I Q +++  G C  TW+GFS  AF DL+PV KLS+SSG MICLE WYN
Sbjct:   219 MTSSLVAHWLPNIAQVLFVTCGGCTETWRGFSWLAFKDLWPVFKLSVSSGGMICLELWYN 278

Query:    61 ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
             ++L+LL G++KNA + +++ +IC+NI + E M+ FGF+AA+     N+
Sbjct:   279 SILILLTGNLKNAEVALNALAICININALEMMVAFGFMAAASVRVSNE 326

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 8.9e-25, P = 8.9e-25
 Identities = 52/108 (48%), Positives = 75/108 (69%)

Query:     1 MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
             M++ ++A W   I Q +++  G C +TW+GFS  AF DL+PV KLS+SSG M+CLE WYN
Sbjct:   219 MTSTLVAFWLPNIAQLLFVTCGGCKDTWRGFSMMAFKDLWPVFKLSMSSGGMLCLELWYN 278

Query:    61 ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
             ++LVLL G++KNA + + + +ICLNI   E M+  GFLAA+     N+
Sbjct:   279 SILVLLTGNLKNAEVALDALAICLNINGLEMMIALGFLAAASVRVSNE 326

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 49/100 (49%), Positives = 73/100 (73%)

Query:     1 MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYN 60
             M++ ++A W   I Q +Y+  G C +TW+GF+  AF DL+PV KLS+SSG M+CLE WYN
Sbjct:   219 MTSTLVAFWMPNIVQLLYVTSGGCKDTWRGFTMLAFKDLWPVFKLSLSSGGMVCLELWYN 278

Query:    61 ALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
             ++LVLL G++KNA + I + +IC+N+ + + M+  GFLAA
Sbjct:   279 SILVLLTGNLKNAEVAIDALAICINVNALQMMIALGFLAA 318

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query:     1 MSAMIIASW-FIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWY 59
             ++ ++ ASW FIV+ Q VY+F G C   W GFS  AF +L+  ++LS++S VM+CLE WY
Sbjct:   227 LAVVLNASWWFIVVAQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWY 286

Query:    60 NALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
                ++L AG++KNA I +++ SIC+NI+ W  M+  G  AA
Sbjct:   287 LMAVILFAGYLKNAEISVAALSICMNILGWTAMIAIGMNAA 327

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/99 (47%), Positives = 65/99 (65%)

Query:     2 SAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
             +A  +++W I I Q VY+ G WC + WKG S  AF D++P LKLS +S VM+CLE WY  
Sbjct:   272 AAFDVSAWGIAIAQVVYVVG-WCKDGWKGLSWLAFQDVWPFLKLSFASAVMLCLEIWYFM 330

Query:    62 LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
              +++L GH+++  I + S SIC+NI  WE ML  G  AA
Sbjct:   331 TIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAA 369

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 44/101 (43%), Positives = 67/101 (66%)

Query:     1 MSAMIIASW-FIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWY 59
             ++ ++ ASW FI + Q VY+F G C   W GFS  AF +L+  ++LS++S VM+CLE WY
Sbjct:   227 LAVVLNASWCFIDMAQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWY 286

Query:    60 NALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
                ++L AG++KNA I +++ SIC+NI+ W  M+  G   A
Sbjct:   287 FMAIILFAGYLKNAEISVAALSICMNILGWTAMIAIGMNTA 327

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:     9 WFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAG 68
             W IV+ Q VY+F   C   W GF+  AF +L+  +KLS++S  M+CLE WY   LVL AG
Sbjct:   258 WVIVVAQLVYIFNCTCGEAWSGFTWEAFHNLWGFVKLSLASAAMLCLEIWYFMALVLFAG 317

Query:    69 HMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
             ++KNA + +++ SIC+NI+ W  M+ FG  AA
Sbjct:   318 YLKNAEVSVAALSICMNILGWAAMVAFGTNAA 349

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 48/107 (44%), Positives = 65/107 (60%)

Query:     3 AMIIASWFI-VIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
             A I  SW++ V+   VY   G CP TW G SS A   L+  LKLS SSGVM+CLE WY  
Sbjct:   221 ATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSGVMLCLENWYYR 280

Query:    62 LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108
             +L+++ G+++NA I + S SIC+ I  WE M+   F A +G    N+
Sbjct:   281 ILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLAFFAGTGVRVANE 327

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	5e-22
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	2e-08

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 88.4 bits (220), Expect = 5e-22
 Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 3   AMIIASWFIVIGQFVYLFGGW-CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
           A  I+ W IV+   +Y+F       TW GFS  AF    P LKL+I S +M+CLE+W   
Sbjct: 186 ATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLEWWAFE 245

Query: 62  LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
           +LVLLAG +   T+ +++ SICL   S  +M+  G   A
Sbjct: 246 ILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIA 283

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 3   AMIIASWFIVIGQFVYLFGGW-CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNA 61
           A +I+ W + +    Y+         W+G     +  L  +LKL +     + LE    A
Sbjct: 178 ATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFA 237

Query: 62  LLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAA 100
           LL LL   +   +I +++  I LN+ S  FM  FGF  A
Sbjct: 238 LLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIA 274

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.84
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.8
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.73
PRK00187	464	multidrug efflux protein NorA; Provisional	99.69
PRK10189	478	MATE family multidrug exporter; Provisional	99.67
PRK01766	456	multidrug efflux protein; Reviewed	99.58
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.52
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.27
PRK10189	478	MATE family multidrug exporter; Provisional	98.94
PRK00187	464	multidrug efflux protein NorA; Provisional	98.82
PRK15099	416	O-antigen translocase; Provisional	98.8
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.57
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.56
PRK01766	456	multidrug efflux protein; Reviewed	98.56
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.33
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.29
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	98.2
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	98.05
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.39
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	96.99
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	96.7
KOG1347	473	consensus Uncharacterized membrane protein, predic	96.59
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.47
COG0728	518	MviN Uncharacterized membrane protein, putative vi	95.3
PRK10459	492	colanic acid exporter; Provisional	93.11
COG2244	480	RfbX Membrane protein involved in the export of O-	90.71
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	82.59

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.84  E-value=1.5e-20  Score=146.05  Aligned_cols=108  Identities=38%  Similarity=0.656  Sum_probs=104.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSF   80 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~   80 (111)
                      |++..+++|++..++..|+....++++|.+++++ +++|++++|+++|+++|.|+|||.|++..++.|.+||++.+++++
T Consensus       209 ala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~  287 (473)
T KOG1347|consen  209 ALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQ  287 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            5789999999999999999887888999999988 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           81 SICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        81 ~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +|++|+.++.||+|.|++.|+++||+|++
T Consensus       288 sI~~~~~~~~~~~~~~~~~a~strv~neL  316 (473)
T KOG1347|consen  288 SICLEIGGWHLMIPGAFSAAVSTRVSNEL  316 (473)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999986

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.80  E-value=4.8e-19  Score=136.89  Aligned_cols=107  Identities=22%  Similarity=0.251  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhccc--CcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGGWC--PNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS   78 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA   78 (111)
                      |+||.+++++.+++++.|+.+++.  +....+..+++++.+|+++|+|+|++++...|...+...+.+.+++|  +.++|
T Consensus       200 A~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lA  277 (455)
T COG0534         200 ALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALA  277 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHH
Confidence            689999999999999999988742  22323444677799999999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           79 SFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        79 A~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      ||+|+.++.++.||+++|+++|++++|||++
T Consensus       278 a~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~  308 (455)
T COG0534         278 AYGIALRIASFIFMPPFGIAQAVTILVGQNL  308 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999975

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.73  E-value=6e-17  Score=124.66  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccCcc-cCCCCHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCPNT-WKGFSSAAF-ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI   77 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~~~-~~~~~~~~~-~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l   77 (111)
                      |+||.+++++.+++...|++++ +.++. ++.+ ++++ +.+|+++|+|.|++++...|..++.+.+.+++++|  +.++
T Consensus       191 a~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~al  267 (441)
T PRK10367        191 ALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDII  267 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHH
Confidence            5899999999998887777654 22211 1111 2222 46899999999999999999999999999999999  8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |||+|+.|+.++.|++++|+++|++++|||++
T Consensus       268 Aa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~  299 (441)
T PRK10367        268 AVNAVLMTLLTFTAYALDGFAYAVEAHSGQAY  299 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999975

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.69  E-value=4.7e-16  Score=120.18  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccCc--ccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCPN--TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI   77 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~~--~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l   77 (111)
                      |+||.+++++..+.+..|++++ ++++  .++++.+++++.+|+++|+|+|++++.+.|...+.+.+.+++++|  +.++
T Consensus       194 alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~al  271 (464)
T PRK00187        194 GLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQL  271 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHH
Confidence            5799999999888877777765 3322  122333456778999999999999999999999999999999999  8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |||+++.|+..+.++++.|++.|++++|||++
T Consensus       272 Aa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~  303 (464)
T PRK00187        272 AAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY  303 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999975

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.67  E-value=9.2e-16  Score=119.17  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-c--cCcccCC-CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-W--CPNTWKG-FSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIE   76 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~--~~~~~~~-~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~   76 (111)
                      |+||.+++++..+++..++.++ +  .+..+++ +.+++++.+|+++|+|+|.+++...+...+.+.+.+++++|  +.+
T Consensus       216 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~  293 (478)
T PRK10189        216 GLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSV  293 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHH
Confidence            5799999999988876655543 2  1112222 22346788999999999999999999999988899999999  889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           77 ISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        77 lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +|||+|+.|+.++.|+++.|+++|++++|||++
T Consensus       294 ~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~  326 (478)
T PRK10189        294 IAGNFIAFSIAALINLPGNALGSASTIITGTRL  326 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999975

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.58  E-value=2.6e-14  Score=109.61  Aligned_cols=107  Identities=23%  Similarity=0.348  Sum_probs=92.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI   77 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l   77 (111)
                      |+||.+++++..+....|++++ +++  +.+.++.+++++.+|+++|+|+|..++...|...+.+...+++++|  +.++
T Consensus       197 a~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~l  274 (456)
T PRK01766        197 GVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTV  274 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHH
Confidence            4789999999999888777655 322  1233334456678999999999999999999999999999999999  8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |+++++.|+.++.++++.|++.|+++++||++
T Consensus       275 Aa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~  306 (456)
T PRK01766        275 AAHQIALNFSSLLFMLPLSLAMALTIRVGFEL  306 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999975

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.52  E-value=1.7e-13  Score=105.55  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=90.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcccCcccC-CCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGGWCPNTWK-GFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISS   79 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~~~~~~~~-~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA   79 (111)
                      |+||.+++++.+++.+.|+++++.+..++ +..+.+++.+|+++|+|+|++++...+...+.+...+.+++|+ +.++|+
T Consensus       194 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa  272 (453)
T PRK09575        194 AIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGA  272 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHH
Confidence            57999999999998888776553222221 1223556788999999999999999999999999999999994 257999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           80 FSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        80 ~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |+++.|+..+.++++.|++.+++++|||++
T Consensus       273 ~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~  302 (453)
T PRK09575        273 YAIVGYLMVLYYLVAEGIAEGMQPPVSYYF  302 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            999999999999999999999999999974

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.27  E-value=1.4e-10  Score=85.36  Aligned_cols=106  Identities=26%  Similarity=0.401  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISS   79 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA   79 (111)
                      ++++.+++.+.++....+.+++ +.+..|++..+.+++.+|+++|+|+|..+....+...+.+...+.+.+|  +.++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~  253 (342)
T TIGR00797       176 ALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAA  253 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHH
Confidence            3678889998888777666554 4433444434456678899999999999999999999999999999999  778999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369           80 FSICLNIISWEFMLVFGFLAASGYVSKND  108 (111)
Q Consensus        80 ~~I~~n~~~l~f~~~~gl~~A~sirVg~~  108 (111)
                      ++++.++..+.++++.+++.+...+++++
T Consensus       254 ~~~a~~~~~~~~~~~~~~~~a~~~~~~~~  282 (342)
T TIGR00797       254 HQIALNVESLLFMPAFGFGIAVSILVGQA  282 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.94  E-value=1.3e-08  Score=79.42  Aligned_cols=71  Identities=6%  Similarity=-0.062  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +.+|+++|+|+|..++...+.....+-+.++|++|  ++++||++++.++..+.+++..|++.++++++||++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~   96 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSL   96 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44899999999999999999999999999999999  889999999999999999999999999999999974

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.82  E-value=4.9e-08  Score=75.70  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      .+++|+++|+|+|..++...+......-+.++|++|  +.++||++++.++.++.++++.|++.+.+++++|+.
T Consensus         6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~   77 (464)
T PRK00187          6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRH   77 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456899999999999999999999999999999999  889999999999999999999999999999999874

>PRK15099 O-antigen translocase; Provisional

Probab=98.80  E-value=1.7e-07  Score=71.31  Aligned_cols=105  Identities=10%  Similarity=-0.034  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCchHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAG-HMKNATIEIS   78 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g-~lg~~~~~lA   78 (111)
                      ++||.+++.+..+..+.++.++ +.+..+.+ .+.+++.+|++++.|.|..++.........+...+++ .+|  +.+++
T Consensus       176 ~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg  252 (416)
T PRK15099        176 LLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVG  252 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhh
Confidence            4789999988877766666544 21111111 1234567899999999999999999999999888886 999  77999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 038369           79 SFSICLNIIS-WEFMLVFGFLAASGYVSKND  108 (111)
Q Consensus        79 A~~I~~n~~~-l~f~~~~gl~~A~sirVg~~  108 (111)
                      .++++.++.. +..+++.+++++..-+++++
T Consensus       253 ~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~  283 (416)
T PRK15099        253 IWQGVSSISDAYLQFITASFSVYLLPTLSRL  283 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999977 55899999999999999873

>TIGR01695 mviN integral membrane protein MviN

Probab=98.57  E-value=2.1e-06  Score=66.30  Aligned_cols=103  Identities=12%  Similarity=-0.042  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 038369            2 SAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFS   81 (111)
Q Consensus         2 iat~is~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~   81 (111)
                      +++.+++.+..+....+.++++.+  |+...+.+++.+|+++|.|.|..++...+.....+-..+.+.+|  +.++++++
T Consensus       187 ~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~  262 (502)
T TIGR01695       187 IGVLIGGVAQLLIQLPFLRKAGFL--LKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALY  262 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCc--ccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHH
Confidence            678888888887776666544321  11111123467899999999999999999999999888888888  66889999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 038369           82 ICLNIISWEFM-LVFGFLAASGYVSKND  108 (111)
Q Consensus        82 I~~n~~~l~f~-~~~gl~~A~sirVg~~  108 (111)
                      ++.++..+... +..+++.+...++++.
T Consensus       263 ~a~~l~~~~~~~~~~~i~~~~~P~~s~~  290 (502)
T TIGR01695       263 YANRIYQLPLGIFGISLSTVLLPKLSRH  290 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888775 5778999999888875

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.56  E-value=8.3e-07  Score=68.59  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +++.|+++|+++|..+++..+.....+-+.++|++|+ +.++||.+++.++..+.+.+..|++.++++.++|.+
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~   77 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAF   77 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567999999999999999999999999999999942 668999999999999999999999999999999874

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.56  E-value=1.3e-06  Score=67.08  Aligned_cols=72  Identities=13%  Similarity=0.102  Sum_probs=67.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      .+.+|+++|+++|..++...+.....+-..+++++|  +.++|+++++.++..+.+.+..|++.+.+.+++|++
T Consensus         8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~   79 (456)
T PRK01766          8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLN   79 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999  789999999999999999999999999999999864

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.33  E-value=7.6e-06  Score=63.67  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +.+|+++|+++|..+++..+...-.+=++++|++|  +.++||.+++.++..+.+.+..|++.++++.++|++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~   84 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAI   84 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            57899999999999999999999999999999999  899999999999999999999999999999999974

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.29  E-value=6.5e-06  Score=63.62  Aligned_cols=71  Identities=10%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHM-KNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~l-g~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      +..|+++|+++|..++...+...-.+-+.+.|++ |  +.++|+.+++.++..+.+.+..+++.++++++||.+
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~   80 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKR   80 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            5579999999999999999999999999999996 8  789999999999999999999999999999999864

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=98.20  E-value=1.1e-06  Score=58.11  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           48 SSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        48 P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |..++...|...+.+.+.+++++|  ++++|+++++.++..+.+++..|++.|+++++||++
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~   60 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNI   60 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccc
Confidence            899999999999999999999999  789999999999999999999999999999999864

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=98.05  E-value=0.00016  Score=55.58  Aligned_cols=107  Identities=8%  Similarity=0.083  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhc-ccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-h
Q 038369            2 SAMIIASWFIVIGQFVYLFGG-WCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHM----KN-A   73 (111)
Q Consensus         2 iat~is~~~~~~~l~~y~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~l----g~-~   73 (111)
                      +++.+++++..+....+.+++ +.+  ..+.++.+.+++.+|++++.|+|..++...+.....+-.++.++.    |. .
T Consensus       184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~  263 (488)
T TIGR02900       184 LSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTY  263 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            466778888877766555444 212  122222344567899999999999999999999988888887754    21 0


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369           74 TIEISSF----SICLNIISWEFMLVFGFLAASGYVSKND  108 (111)
Q Consensus        74 ~~~lAA~----~I~~n~~~l~f~~~~gl~~A~sirVg~~  108 (111)
                      +.+.+..    +++.++..+..++..+++.+...++++.
T Consensus       264 ~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~  302 (488)
T TIGR02900       264 REATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEA  302 (488)
T ss_pred             HHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            1122222    2445566666677788899988888875

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.39  E-value=0.016  Score=40.61  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=59.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038369           36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSK  106 (111)
Q Consensus        36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg  106 (111)
                      .+..|+++|.|.|........+.....-.++.+.+-+ +.+++-++++.++.....+++..+..+..=+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s  270 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLS  270 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999999999999998888888754 678999999999999999999888876554443

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>TIGR00797 matE putative efflux protein, MATE family

Probab=96.99  E-value=0.0058  Score=44.82  Aligned_cols=60  Identities=12%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           48 SSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        48 P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |..++...+.....+.+++.+++|  +.++++++++.++..+...++.|++++.+.++++..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~   60 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAV   60 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            677888888888999999999999  788999999999999999999999999999999753

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=96.70  E-value=0.13  Score=40.10  Aligned_cols=95  Identities=13%  Similarity=0.083  Sum_probs=65.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGGWCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS   78 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA   78 (111)
                      |++..++..++.+.++.+.++...+  ..++ +.   .++.|+++|...|..+.........-+-..+++.++  +-.++
T Consensus       161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs  234 (451)
T PF03023_consen  161 AWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD-WR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVS  234 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccccCC-CC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHH
Confidence            4678888888888777776655322  2221 11   245799999999999999999888888888899999  66777


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHH
Q 038369           79 SFSICLNIISWEF-MLVFGFLAAS  101 (111)
Q Consensus        79 A~~I~~n~~~l~f-~~~~gl~~A~  101 (111)
                      +...+..+..+.. .+..+++.+.
T Consensus       235 ~l~YA~~l~~lp~~i~~~~i~tv~  258 (451)
T PF03023_consen  235 ALNYAQRLYQLPLGIFAVSISTVV  258 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666555544 2333444443

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=96.59  E-value=0.0094  Score=46.99  Aligned_cols=72  Identities=13%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 038369           35 AFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISW-EFMLVFGFLAASGYVSKND  108 (111)
Q Consensus        35 ~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l-~f~~~~gl~~A~sirVg~~  108 (111)
                      ..++.|++.+++.|..+....+...-.+...++|++|  +.++|+.+++.++.+. .|-+-.|++.+.-+..||+
T Consensus        23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa   95 (473)
T KOG1347|consen   23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQA   95 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhh
Confidence            3578899999999999999999999999999999999  7799999999888876 6788889998888888875

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.47  E-value=0.16  Score=35.22  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 038369           41 PVLKLSISSGVMICLEFWYNALLVLLAGH-MKNATIEISSFSICLNIISWEF-MLVFGFLAASGYVSKN  107 (111)
Q Consensus        41 ~~l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~~~~lAA~~I~~n~~~l~f-~~~~gl~~A~sirVg~  107 (111)
                      +.+|-+.|........+....+-.++++. +|  .++++.++++.++..... +++.+++....-+..+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999 87  789999999999999888 8888888776665544

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=95.30  E-value=0.45  Score=38.18  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcc--cCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGGW--CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS   78 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~~--~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA   78 (111)
                      |+++.++-..+.+..+..+++.+  .+..| +++.   ++.|++.+.-.|.-+.........-+-+.+++.+.  +-+.+
T Consensus       195 a~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~-~~~~---~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~--~Gsis  268 (518)
T COG0728         195 AWGVLIGGLLQLLVQLPALRKAGLLIKPRF-GFKD---PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA--EGSVS  268 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccCCCC-CCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccHH
Confidence            46788888888888877777663  22222 2222   56799999999999999999999999999999997  33443


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 038369           79 SFSICLNIISWEFMLVFGF   97 (111)
Q Consensus        79 A~~I~~n~~~l~f~~~~gl   97 (111)
                      .    ++.....|+.|+|+
T Consensus       269 ~----l~YA~rl~qlPlGi  283 (518)
T COG0728         269 W----LYYADRLYQLPLGI  283 (518)
T ss_pred             H----HHHHHHHHHhhHHH
Confidence            3    57778888989865

>PRK10459 colanic acid exporter; Provisional

Probab=93.11  E-value=2.5  Score=32.72  Aligned_cols=53  Identities=11%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH
Q 038369           36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISW   89 (111)
Q Consensus        36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l   89 (111)
                      .+.+|++++.|.|..............-.++.|.+-+ +.+++.++.+.++..+
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~  255 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATV  255 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHH
Confidence            4668999999999999888888887777787766532 6788888888887655

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=90.71  E-value=6.3  Score=30.34  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038369           35 AFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAAS  101 (111)
Q Consensus        35 ~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~  101 (111)
                      .++.+++++|.|+|..............=.++.|.+-. +.+++-++.+..+......+...++.+.
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l  273 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVL  273 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999888888888776632 5667777766666666666666665544

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=82.59  E-value=11  Score=28.94  Aligned_cols=63  Identities=10%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 038369           43 LKLSISSGVMICLEFWYNALLVLLAGH-MKNATIEISSFSICLNIISWEFMLV-FGFLAASGYVSKN  107 (111)
Q Consensus        43 l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~~~~lAA~~I~~n~~~l~f~~~-~gl~~A~sirVg~  107 (111)
                      +|=+.|..+........--+.+.+.++ +|  +++.++.+.+.++..+..++. +|++.+.+-++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~   66 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAE   66 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            355677777777766666666777776 69  889999999998888877765 6899888887765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-06

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 3   AMIIASWFIVIGQFVYLFGGW---CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWY 59
           A  I  W +++    Y+           ++ F      +L  + +L       +  E   
Sbjct: 198 ATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTL 257

Query: 60  NALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAAS 101
            A++ LL   +   +  +++  + LN  S  FM      AA 
Sbjct: 258 FAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAV 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.37
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	97.79

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.37  E-value=4.4e-12  Score=94.79  Aligned_cols=107  Identities=17%  Similarity=0.278  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhc-ccCc--ccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369            1 MSAMIIASWFIVIGQFVYLFGG-WCPN--TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI   77 (111)
Q Consensus         1 Aiat~is~~~~~~~l~~y~~~~-~~~~--~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l   77 (111)
                      |+||.+++++..++...+++++ +.++  .++++.+++++.+|+++|+|+|..++...+...+.+...+++++|  +.++
T Consensus       196 a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~v  273 (460)
T 3mkt_A          196 GVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVV  273 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHH
Confidence            4789999999998888887765 3222  234444566788899999999999999999999999999999999  7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369           78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH  109 (111)
Q Consensus        78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l  109 (111)
                      |+++++.++.++.++++.|++.+...++|+++
T Consensus       274 a~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          274 AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=97.79  E-value=4.2e-05  Score=56.76  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369           34 AAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND  108 (111)
Q Consensus        34 ~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~  108 (111)
                      ...+..|+++|.++|..+........-.+-+.+++++|  ++++++.+++.++..+...+..|++.+.+..++++
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~   78 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQL   78 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999  77899999999999998999999999998888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00