Citrus Sinensis ID: 038373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHcHHccHHHHHHHHHHHHHHcccccEEEEHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHcccccccccccccEEEEccEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEccccccEcccccEcccccc
Coil and Loop (DISEMBL)
MASLVSIQQHAANSMIissnfnskishsisahsvtlkssspvkllcayatpnpkvyrntrfvkkqrnpssneqepktgtghsqntndplrgnaqlESLDVNLLSLCKEGKVREAIEYMgqdasasagyDVFSSLLDscgnlksieMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYaangqgadGLMLFEQMrktgphpdkeTFLVVFAACASAEAVKEGFLYFEIMkndygivpgIEHYIAIIKVLGsaghlieaeefvermpfeptVEVWEALRNFAQIHGDVELEDRAEEllgdldpskaivdkiplpprkkqsatnmleeknrvsdyrstdlyrgeyekmkglngqmreagyvpdtryvlHDIDEEAKEKALQYHSERLAIAYglistpprmplrIIKNLRICGDCHNAIKIMSKIVGrelivrdnkrfhhfrdgkcscgdyw
Flexible Loop (DISEMBL)
MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYatpnpkvyrntrfvkkqrnpssneqepktgtghsqntnDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELlgdldpskaivdkiplpprkkqsatnmleeknrvsdyrstdlyrGEYEkmkglngqmreagYVPDTRYVLHDIDEEAKEKALQYHSERLAIAyglistpprMPLRIIKNLRICGDCHNAIKIMskivgrelivrdnkrfhhfrdgkcscgdyw
Low Complexity Region (SEG)
MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Disordered region (IsUnstruct)
*****************************************VKLLCAYATPNPKVYRNT**************************************LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQM********KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELED*************************************************************MREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCG***
Disordered Region (DISOPRED)
*********HA*NSMIISSNF**K***SISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Disordered Region (DISEMBL)
********QHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVK********************NTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Disordered Region (DISPRO)
MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	475	2.2.26 [Sep-21-2011]
Q9ZQE5	579	Pentatricopeptide repeat-	yes	no	0.774	0.635	0.540	1e-124
Q9SUU7	537	Pentatricopeptide repeat-	no	no	0.825	0.729	0.399	5e-82
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.728	0.436	0.412	2e-79
Q680H3	615	Pentatricopeptide repeat-	no	no	0.772	0.596	0.404	2e-78
Q9LIQ7	633	Pentatricopeptide repeat-	no	no	0.724	0.543	0.386	1e-75
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.726	0.441	0.372	3e-75
Q9LW63	715	Putative pentatricopeptid	no	no	0.776	0.516	0.381	5e-75
Q9SHZ8	786	Pentatricopeptide repeat-	no	no	0.692	0.418	0.411	6e-73
Q9LNU6	760	Pentatricopeptide repeat-	no	no	0.776	0.485	0.348	4e-72
Q8LK93	603	Pentatricopeptide repeat-	no	no	0.722	0.568	0.371	7e-72

>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 202/374 (54%), Positives = 273/374 (72%), Gaps = 6/374 (1%)

Query: 102 LLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK 161
           ++ LC+    ++AIE +  D  A    + F  L +SC NLKS+E  K+VH+    S F  
Sbjct: 212 VMRLCQRRLYKDAIELL--DKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRG 269

Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
           D +LNN +I M+G+C +   A++VFD +  +++ SWHLM+  Y+ NG G D L LFE+M 
Sbjct: 270 DPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMT 329

Query: 222 KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281
           K G  P++ETFL VF ACA+   ++E FL+F+ MKN++GI P  EHY+ ++ VLG  GHL
Sbjct: 330 KHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHL 389

Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPR 341
           +EAE+++  +PFEPT + WEA+RN+A++HGD++LED  EEL+ D+DPSKA+++KIP PP 
Sbjct: 390 VEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPP 449

Query: 342 KKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE 401
           K    TNM+  K+R+ ++R+   Y+ E ++M    G +    YVPDTR+VLHDID+EAKE
Sbjct: 450 KSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAKKGVV----YVPDTRFVLHDIDQEAKE 505

Query: 402 KALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 461
           +AL YHSERLAIAYG+I TPPR  L IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRF
Sbjct: 506 QALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRF 565

Query: 462 HHFRDGKCSCGDYW 475
           HHF+DGKCSCGDYW
Sbjct: 566 HHFKDGKCSCGDYW 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1

 Score =  305 bits (781), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 167/418 (39%), Positives = 247/418 (59%), Gaps = 26/418 (6%)

Query: 73  QEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-- 130
           QE  TG  H Q  +    G++ L+ LD    S+C+EGKV++A+E +   +  + GY V  
Sbjct: 131 QENNTGGNHFQQDHS---GHSSLDELD----SICREGKVKKAVEII--KSWRNEGYVVDL 181

Query: 131 --FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188
                +   CG+ ++++  K VHE + +S  + D+   N +IEMY  C +   A  VF+ 
Sbjct: 182 PRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNS 241

Query: 189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
           + +RNL +W  +I  +A NGQG D +  F + ++ G  PD E F  +F AC     + EG
Sbjct: 242 MPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEG 301

Query: 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308
            L+FE M  +YGI+P +EHY++++K+L   G+L EA  FVE M  EP V++WE L N ++
Sbjct: 302 LLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSR 359

Query: 309 IHGDVELEDRAEELLGDLDPSKAIVD-KIPLPPRK-----KQSATNMLEEKNRVSDYRST 362
           +HGD+ L DR ++++  LD S+   + K  L P K     K+    M +  N    Y + 
Sbjct: 360 VHGDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAA 419

Query: 363 -DLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGL 417
            D+ R E    Y  +K L   M E GYVP ++  LHD+D+E+K++ L  H+ER A     
Sbjct: 420 GDISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTF 479

Query: 418 ISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           + TP R  +R++KNLR+C DCHNA+K+MSKIVGRELI RD KRFHH +DG CSC +YW
Sbjct: 480 LDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 212/371 (57%), Gaps = 25/371 (6%)

Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
             + +L +C  L ++ +GK VH+L+R++ F   + ++  LI MY KC +   AR++FD +
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481

Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
            K+N  +W+ MISGY  +GQG + L +F +M  +G  P   TFL V  AC+ A  VKEG 
Sbjct: 482 TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD 541

Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
             F  M + YG  P ++HY  ++ +LG AGHL  A +F+E M  EP   VWE L    +I
Sbjct: 542 EIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRI 601

Query: 310 HGDVELEDRAEELLGDLDPSK----AIVDKIPLPPRK-KQSATNMLEEKNR--------- 355
           H D  L     E L +LDP       ++  I    R   Q+AT     K R         
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661

Query: 356 -----------VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKAL 404
                       S  +S    +  YEK++ L G+MREAGY P+T   LHD++EE +E  +
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 721

Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
           + HSERLAIA+GLI+T P   +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF
Sbjct: 722 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 781

Query: 465 RDGKCSCGDYW 475
           +DG CSCGDYW
Sbjct: 782 KDGVCSCGDYW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2

 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/393 (40%), Positives = 233/393 (59%), Gaps = 26/393 (6%)

Query: 104 SLCKEGKVREAIEYMGQDASASAGYDV-FSSLL---DSCGNLKSIEMGKRVHELLRTSAF 159
           + CK GKV++A+  +  D  AS  Y V  S LL     CG  + ++  K VH  +  S  
Sbjct: 228 AFCKHGKVKKALYTI--DILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVS 285

Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
             D+  N+ L+EMY  C     A  VF+++ ++NL +W ++I  +A NG G D + +F +
Sbjct: 286 HLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSR 345

Query: 220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279
            ++ G  PD + F  +F AC     V EG L+FE M  DYGI P IE Y++++++    G
Sbjct: 346 FKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPG 405

Query: 280 HLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDK---- 335
            L EA EFVERMP EP V+VWE L N +++HG++EL D   E++  LDP++  ++K    
Sbjct: 406 FLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTR--LNKQSRE 463

Query: 336 --IPLPPR-------KKQSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREA 382
             IP+          KK+S   +   K+ + ++R+ D    E    ++ ++ L   M E 
Sbjct: 464 GFIPVKASDVEKESLKKRSGI-LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEV 522

Query: 383 GYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAI 442
           GYV +TR  LHDID+E+KE  L  HSER+A A  ++++ PR P  +IKNLR+C DCHNA+
Sbjct: 523 GYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNAL 582

Query: 443 KIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           KIMS IVGRE+I RD KRFH  ++G C+C DYW
Sbjct: 583 KIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1

 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 221/370 (59%), Gaps = 26/370 (7%)

Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
           ++SL  +C +   +E GK VH  +  S         N L++MY K  +   ARK+FD+L 
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
           KR++ SW+ +++ YA +G G + +  FE+MR+ G  P++ +FL V  AC+ +  + EG+ 
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384

Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
           Y+E+MK D GIVP   HY+ ++ +LG AG L  A  F+E MP EPT  +W+AL N  ++H
Sbjct: 385 YYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443

Query: 311 GDVELEDRAEELLGDLDP---------------------SKAIVDKIPLPPRKKQSATNM 349
            + EL   A E + +LDP                     +  +  K+     KK+ A + 
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 503

Query: 350 LEEKNRVSDYRSTDLYRGEYE----KMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
           +E +N +  + + D    + E    K + +  +++E GYVPDT +V+  +D++ +E  LQ
Sbjct: 504 VEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQ 563

Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
           YHSE++A+A+ L++TPP   + I KN+R+CGDCH AIK+ SK+VGRE+IVRD  RFHHF+
Sbjct: 564 YHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFK 623

Query: 466 DGKCSCGDYW 475
           DG CSC DYW
Sbjct: 624 DGNCSCKDYW 633

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  282 bits (722), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 217/370 (58%), Gaps = 25/370 (6%)

Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
           FSS L +C ++ ++E+GK++H  L    +     + N L+ MY KC +   A  +F ++ 
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471

Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
            +++ SW+ MI+GY+ +G G   L  FE M++ G  PD  T + V +AC+    V +G  
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531

Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
           YF  M  DYG++P  +HY  ++ +LG AG L +A   ++ MPFEP   +W  L   +++H
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591

Query: 311 GDVELEDRAEELLGDLDPSKA-----------------IVDKIPLPPR----KKQSATNM 349
           G+ EL + A + +  ++P  +                  V K+ +  R    KK    + 
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651

Query: 350 LEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
           +E +N+   +   D +  E    +  ++ L+ +M++AGYV  T  VLHD++EE KE+ ++
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVR 711

Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
           YHSERLA+AYG++      P+R+IKNLR+C DCHNAIK M++I GR +I+RDN RFHHF+
Sbjct: 712 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFK 771

Query: 466 DGKCSCGDYW 475
           DG CSCGDYW
Sbjct: 772 DGSCSCGDYW 781

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  282 bits (721), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 151/396 (38%), Positives = 224/396 (56%), Gaps = 27/396 (6%)

Query: 107 KEGKVREAIEYMGQDASASA--GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
           + G+  EA+    Q  +A    G   FSS++ +C +L ++ +GK++H  +    F  ++ 
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379

Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
           + + L++MY KC N + ARK+FD++   +  SW  +I G+A +G G + + LFE+M++ G
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439

Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
             P++  F+ V  AC+    V E + YF  M   YG+   +EHY A+  +LG AG L EA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499

Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK--AIV--------- 333
             F+ +M  EPT  VW  L +   +H ++EL ++  E +  +D     A V         
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASN 559

Query: 334 ------DKIPLPPRK----KQSATNMLEEKNRVSDYRSTDLYRGEYEK----MKGLNGQM 379
                  K+ L  RK    K+ A + +E KN+   + S D      +K    +K +  QM
Sbjct: 560 GRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQM 619

Query: 380 REAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCH 439
            + GYV DT  VLHD+DEE K + L  HSERLA+A+G+I+T P   +R+ KN+RIC DCH
Sbjct: 620 EKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCH 679

Query: 440 NAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
            AIK +SKI  RE+IVRDN RFHHF  G CSCGDYW
Sbjct: 680 VAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1

 Score =  275 bits (703), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/355 (41%), Positives = 207/355 (58%), Gaps = 26/355 (7%)

Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR-KRNLSSWHLMISGYA 205
           GK++H     S  +  V ++N LI MY K  N   A + FD +R +R+  SW  MI   A
Sbjct: 432 GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALA 491

Query: 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI 265
            +G   + L LFE M   G  PD  T++ VF+AC  A  V +G  YF++MK+   I+P +
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551

Query: 266 EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD 325
            HY  ++ + G AG L EA+EF+E+MP EP V  W +L +  ++H +++L   A E L  
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611

Query: 326 LDPSKA---------------------IVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDL 364
           L+P  +                     I   +     KK+   + +E K++V  +   D 
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671

Query: 365 YRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLIST 420
              E    Y  MK +  ++++ GYVPDT  VLHD++EE KE+ L++HSE+LAIA+GLIST
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 421 PPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           P +  LRI+KNLR+C DCH AIK +SK+VGRE+IVRD  RFHHF+DG CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 223/396 (56%), Gaps = 27/396 (6%)

Query: 107 KEGKVREAIEYM--GQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
           + GK  EA+E     Q A     +    S+L +CGN+ ++  G+  H        + +V 
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH 424

Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
           + + LI+MY KC    L++ VF+ +  +NL  W+ +++G++ +G+  + + +FE + +T 
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484

Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
             PD  +F  + +AC       EG+ YF++M  +YGI P +EHY  ++ +LG AG L EA
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544

Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK-------------- 330
            + ++ MPFEP   VW AL N  ++  +V+L + A E L  L+P                
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604

Query: 331 -------AIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEY----EKMKGLNGQM 379
                  +I +K+     KK    + ++ KNRV    + D    +     EKM  ++ +M
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664

Query: 380 REAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCH 439
           R++G+ P+  + LHD++E+ +E+ L  HSE+LA+ +GL++TP   PL++IKNLRICGDCH
Sbjct: 665 RKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCH 724

Query: 440 NAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
             IK +S   GRE+ +RD  RFHHF+DG CSCGD+W
Sbjct: 725 AVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2

 Score =  271 bits (693), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 224/369 (60%), Gaps = 26/369 (7%)

Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
           S+L SC  L S+++GK +H+  +  +F K V++N  LI+M+ KC +   A  +F+++R +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294

Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
           +  +W  MI  YA +G+    +++FE+MR     PD+ TFL +  AC+    V+EG  YF
Sbjct: 295 DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYF 354

Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
             M + +GIVP I+HY +++ +L  AG+L +A EF++++P  PT  +W  L      H +
Sbjct: 355 SQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNN 414

Query: 313 VELEDRAEELLGDLDPSKA-----------------IVDKI--PLPPRK--KQSATNMLE 351
           ++L ++  E + +LD S                    VD +   +  RK  K    + +E
Sbjct: 415 LDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIE 474

Query: 352 EKNRVSDYRSTDLYRGEYEKM-KGLNGQMRE---AGYVPDTRYVLH-DIDEEAKEKALQY 406
             N V ++ S D  +    K+ + L+  ++E   +GYVPDT  V+H +++++ KE  L+Y
Sbjct: 475 VNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRY 534

Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
           HSE+LAI +GL++TPP   +R++KNLR+C DCHNA K++S I GR++++RD +RFHHF D
Sbjct: 535 HSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594

Query: 467 GKCSCGDYW 475
           GKCSCGD+W
Sbjct: 595 GKCSCGDFW 603

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
225444971	476	PREDICTED: pentatricopeptide repeat-cont	0.983	0.981	0.650	1e-177
147835805	497	hypothetical protein VITISV_013147 [Viti	0.983	0.939	0.648	1e-176
356497955	452	PREDICTED: pentatricopeptide repeat-cont	0.898	0.944	0.621	1e-156
449446817	458	PREDICTED: pentatricopeptide repeat-cont	0.949	0.984	0.586	1e-152
449488164	458	PREDICTED: pentatricopeptide repeat-cont	0.943	0.978	0.584	1e-151
358248494	449	uncharacterized protein LOC100783921 [Gl	0.892	0.944	0.598	1e-150
147834943	627	hypothetical protein VITISV_021220 [Viti	0.909	0.688	0.570	1e-146
225428796	593	PREDICTED: pentatricopeptide repeat-cont	0.850	0.681	0.597	1e-146
357501199	446	Pentatricopeptide repeat-containing prot	0.877	0.934	0.597	1e-142
356500039	591	PREDICTED: pentatricopeptide repeat-cont	0.783	0.629	0.619	1e-138

>gi|225444971|ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Vitis vinifera]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/484 (65%), Positives = 374/484 (77%), Gaps = 17/484 (3%)

Query: 1   MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSP----VKLLCAYATPNPKVY 56
           MASL+S+ +   NS II+SNF ++I    SA  +   SSSP    +KLLC YA PN +  
Sbjct: 1   MASLMSLNR-TGNS-IITSNFKARIPAHSSALPLKPISSSPQKPPLKLLCTYALPNHQPT 58

Query: 57  RNTRFVKKQRN----PSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVR 112
              R  ++Q N    P  +  +  TGT    N N P   N  +    V+L+ LC+EGK+R
Sbjct: 59  NKPRVFRRQTNSTHPPKQHNGQNLTGT-QLNNANYPQTENFTVVHSGVDLMGLCEEGKIR 117

Query: 113 EAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172
           EA+EYMGQ   A   Y VF ++L SCG  KS+E+G+RVH+LL  S F  DVELNNKLIEM
Sbjct: 118 EAVEYMGQGVCAE--YGVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEM 175

Query: 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF 232
           YG+C + R AR+VFD++R+RN+SSWHLMI+GYAANGQG DGL+LFE+MRK G  P  ETF
Sbjct: 176 YGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQGRDGLLLFERMRKVGLRPVGETF 235

Query: 233 LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292
           + V +AC S   V+EG +YFE+MK + GI+PGIEHY+ +I VLG  GH+ EAEEFV++MP
Sbjct: 236 VAVLSACGS---VEEGLMYFELMKKECGIIPGIEHYLGVIDVLGKFGHINEAEEFVDKMP 292

Query: 293 FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEE 352
            EPT EVWEALRNFA+IHG +ELEDRAEE+L  LDPSKAI DKIP PP+KKQ A NMLE 
Sbjct: 293 IEPTAEVWEALRNFARIHGAIELEDRAEEMLAALDPSKAITDKIPTPPQKKQLAVNMLEG 352

Query: 353 KNRVSDYRSTDLYRGE-YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERL 411
           KNRVS+YRST+ Y+G+ YEK+KGLNGQMREAGYVPDTRYVLHDID+EAKE+AL YHSERL
Sbjct: 353 KNRVSEYRSTNPYKGDAYEKLKGLNGQMREAGYVPDTRYVLHDIDQEAKEQALLYHSERL 412

Query: 412 AIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSC 471
           AIAYGLISTP R PLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF+DGKCSC
Sbjct: 413 AIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSC 472

Query: 472 GDYW 475
           GDYW
Sbjct: 473 GDYW 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835805|emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/484 (64%), Positives = 374/484 (77%), Gaps = 17/484 (3%)

Query: 1   MASLVSIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSP----VKLLCAYATPNPKVY 56
           MAS +S+ +   NS II+SNF ++I    SA  +   SSSP    +KLLC YA PN +  
Sbjct: 1   MASXMSLNR-TGNS-IITSNFKARIPAHSSALPLKPISSSPQNPPLKLLCTYALPNHQPT 58

Query: 57  RNTRFVKKQRN----PSSNEQEPKTGTG-HSQNTNDPLRGNAQLESLDVNLLSLCKEGKV 111
              R  ++Q N    P  +  +  TGT  ++QN N P   N  +    V+L+ LC+EGK+
Sbjct: 59  NKPRVFRRQTNSTHPPKQHNGQNLTGTQLNTQNANYPQTENFTVVHSGVDLMGLCEEGKI 118

Query: 112 REAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171
           REA+EYMGQ   A   Y VF ++L SCG  KS+E+G+RVH+LL  S F  DVELNNKLIE
Sbjct: 119 REAVEYMGQGVCAE--YGVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIE 176

Query: 172 MYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET 231
           MYG+C + R AR+VFD++R+RN+SSWHLMI+GYAANGQG DGL+LFE+MRK G  P  ET
Sbjct: 177 MYGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQGRDGLLLFERMRKVGLRPVGET 236

Query: 232 FLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291
           F+ V +AC S E   EG +YFE+MK + GI+PGIEHY+ +I VLG  GH+ EAEEFV++M
Sbjct: 237 FVAVLSACGSVE---EGLMYFELMKKECGIIPGIEHYLGVIDVLGKFGHINEAEEFVDKM 293

Query: 292 PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLE 351
           P EPT EVWEALRNFA+IHG +ELEDRAEE+L  LDPSKAI DKIP PP+KKQ A NMLE
Sbjct: 294 PIEPTAEVWEALRNFARIHGAIELEDRAEEMLAALDPSKAITDKIPTPPQKKQLAVNMLE 353

Query: 352 EKNRVSDYRSTDLYRGE-YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSER 410
            KNRVS+YRST+ Y+G+ YEK+KGLNGQMREAGYVPDTRYVLHDID+EAKE+AL YHSER
Sbjct: 354 GKNRVSEYRSTNPYKGDAYEKLKGLNGQMREAGYVPDTRYVLHDIDQEAKEQALLYHSER 413

Query: 411 LAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCS 470
           LAIAYGLISTP R PLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF+DGKCS
Sbjct: 414 LAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 473

Query: 471 CGDY 474
           CGDY
Sbjct: 474 CGDY 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497955|ref|XP_003517821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/454 (62%), Positives = 340/454 (74%), Gaps = 27/454 (5%)

Query: 33  SVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGH----------S 82
           +V   SSS +   CAYA PN    RN        N  S  + P    G+           
Sbjct: 15  AVFTHSSSSIPF-CAYAVPNASRRRNG-----TNNSRSTHKIPPLCKGNLPNEQKLQLDH 68

Query: 83  QNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLK 142
           QN N PL        L+V+L+SLC+EG + + +E MGQ   A A Y V+ +LL+ C + +
Sbjct: 69  QNQNAPL-------PLNVDLVSLCEEGNLDQVLELMGQ--GAVADYRVYLALLNLCEHTR 119

Query: 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMIS 202
           S+E GKRVHE LR S F +DVEL+N+LI MY KC + + AR+VFDQ+ +RN+SSWHLMI 
Sbjct: 120 SLESGKRVHEFLRRSTFRRDVELSNRLIGMYCKCGSVKDARRVFDQIPERNISSWHLMIG 179

Query: 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262
           GYAANG G DGL++F+QM++ G  PD ETF +V AACA AEAV+EGFL+FE MK ++GIV
Sbjct: 180 GYAANGLGCDGLLVFQQMKQAGVPPDGETFELVLAACAQAEAVEEGFLHFESMK-EHGIV 238

Query: 263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEEL 322
           P +EHY+ +I +LG+ G L EAEEF+E++P E  VE WE+LRNFAQ HGD++LED AEE+
Sbjct: 239 PSMEHYLEVINILGNTGQLNEAEEFIEKIPIELGVEAWESLRNFAQKHGDLDLEDHAEEV 298

Query: 323 LGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGE-YEKMKGLNGQMRE 381
           L  LDPSKA+ DK+P PPRKKQS  NMLEEKNRV++YR +  Y+ E +EK+ GL+GQMRE
Sbjct: 299 LTCLDPSKAVADKLPPPPRKKQSDMNMLEEKNRVTEYRYSIPYKEEAHEKLGGLSGQMRE 358

Query: 382 AGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNA 441
           AGYVPDTRYVLHDIDEE KEKALQYHSERLAIAYGLISTPPR  LRIIKNLRICGDCHNA
Sbjct: 359 AGYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNA 418

Query: 442 IKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           IKIMSKIVGRELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 419 IKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446817|ref|XP_004141167.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/474 (58%), Positives = 341/474 (71%), Gaps = 23/474 (4%)

Query: 6   SIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQ 65
           SI  HA  +   ++NF S+I   +  H   LKS     L       +     N+RF K  
Sbjct: 4   SIPSHATVNSTATTNFKSRI---LPFHFPVLKSFRSTLL-------STNALSNSRFRKSA 53

Query: 66  RNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESL--DVNLLSLCKEGKVREAIEYMGQDAS 123
                + Q        SQN     R +  + SL   V+LL+LC+EGKV + +EY+GQ   
Sbjct: 54  HQ--YDAQSTTNTLSKSQN-----RTSDSVYSLPSTVDLLALCEEGKVIDVLEYIGQ--G 104

Query: 124 ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR 183
           A   Y VF++LL+SC NLK +E G+RV  LL+ + F  D+ELNN+LIEMY  C   + AR
Sbjct: 105 AKVDYGVFTALLNSCCNLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMKDAR 164

Query: 184 KVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243
           KVFD++  ++ SSW+LMI GY  NG+G +GL LFEQM+  G  P+ ETFLVV AACA AE
Sbjct: 165 KVFDKMANKDTSSWNLMIKGYGDNGEGDNGLALFEQMKNAGLQPNSETFLVVLAACAMAE 224

Query: 244 AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
           AVKEG  YF+IM N+YGI P IEHY+ ++ VLG +GHLIEAEEF+E+MP  PT ++W+AL
Sbjct: 225 AVKEGVFYFKIMANEYGINPEIEHYLGVVDVLGKSGHLIEAEEFIEKMPINPTAKIWDAL 284

Query: 304 RNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIP-LPPRKKQSATNMLEEKNRVSDYRST 362
           RN+A++HG++ELEDRAEEL+  LDPS       P LPPR+KQS+TNMLEEK+RV ++R  
Sbjct: 285 RNYARLHGNMELEDRAEELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREFRCA 344

Query: 363 DLYRGEYE-KMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTP 421
             Y+ E E ++KGLNGQMREAGYVPDTRYVLHDIDEEAK++ALQYHSERLAIAYGLISTP
Sbjct: 345 MPYKEEGEGRLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTP 404

Query: 422 PRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
            R  LRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 405 ARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488164|ref|XP_004157956.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 279/477 (58%), Positives = 347/477 (72%), Gaps = 29/477 (6%)

Query: 6   SIQQHAANSMIISSNFNSKISHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQ 65
           SI  HA  +   ++NF S+I   +  H   LKS     L       +     N+RF K  
Sbjct: 4   SIPSHATVNSTATTNFKSRI---LPFHFPVLKSFRSTLL-------STNALSNSRFRK-- 51

Query: 66  RNPSSNEQEPKTGTG---HSQNTNDPLRGNAQLESL--DVNLLSLCKEGKVREAIEYMGQ 120
              S+++ + ++ T     SQN     R +  + SL   V+LL+LC+EGKV +A+EY+GQ
Sbjct: 52  ---SAHQYDAQSTTNTLYKSQN-----RTSDSVYSLPSTVDLLALCEEGKVIDALEYIGQ 103

Query: 121 DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR 180
              A   Y VF++LL+SC NLK +E G+RV  LL+ + F  D+ELNN+LIEMY  C   +
Sbjct: 104 --GAKVDYGVFTALLNSCCNLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMK 161

Query: 181 LARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240
            ARKVFD++  ++ SSW+LMI G   NG+G +GL LFEQM+  G  P+ ETFLVV AACA
Sbjct: 162 DARKVFDKMANKDTSSWNLMIKGCGDNGEGDNGLALFEQMKNVGLQPNSETFLVVLAACA 221

Query: 241 SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW 300
            AEAVKEG  YF+IM N+YGI P IEHY+ ++ VLG +GHLIEAEEF+E+MP  PT ++W
Sbjct: 222 MAEAVKEGVFYFKIMANEYGINPEIEHYLGVVDVLGKSGHLIEAEEFIEKMPINPTAKIW 281

Query: 301 EALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIP-LPPRKKQSATNMLEEKNRVSDY 359
           +ALRN+A++HG++ELEDRAEEL+  LDPS       P LPPR+KQS+TNMLEEK+RV ++
Sbjct: 282 DALRNYARLHGNMELEDRAEELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREF 341

Query: 360 RSTDLYRGEYE-KMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLI 418
           R    Y+ E E ++KGLNGQMREAGYVPDTRYVLHDIDEEAK++ALQYHSERLAIAYGLI
Sbjct: 342 RCAMPYKEEGEGRLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLI 401

Query: 419 STPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           STP R  LRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 402 STPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248494|ref|NP_001239891.1| uncharacterized protein LOC100783921 [Glycine max] gi|255636013|gb|ACU18351.1| unknown [Glycine max]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/453 (59%), Positives = 334/453 (73%), Gaps = 29/453 (6%)

Query: 34  VTLKSSSPVKLLCAYATPNPKVYRNTRF----------VKKQRNPSSNEQEPKTGTGHSQ 83
               +SS     C Y  P+    RN             ++K+++P  NEQ+ K      Q
Sbjct: 15  AVFTNSSSFVPFCTYTVPDASRRRNGNTGSRSTHKITPLRKEKHP--NEQKLKLD---HQ 69

Query: 84  NTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKS 143
           N N           L+V+L++LC+EG + + +E MGQ   A A Y V+ +LL+ C + +S
Sbjct: 70  NQN----------PLNVDLVALCEEGNLDQVLELMGQ--GAVADYRVYLALLNLCEHTRS 117

Query: 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISG 203
           +E GKRVHE+LR SAF  DVEL+N+LI MY KC + + AR+VFDQ+  RN+++WHLMI G
Sbjct: 118 LESGKRVHEILRRSAFRGDVELSNRLIGMYCKCGSVKNARRVFDQMLDRNMATWHLMIGG 177

Query: 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP 263
           Y +NG G DGL++F+QM++    PD ETF +V AAC+ AEAV+EGFL+FE MK +YGIVP
Sbjct: 178 YTSNGLGCDGLLVFQQMKQAELPPDGETFELVLAACSQAEAVEEGFLHFESMK-EYGIVP 236

Query: 264 GIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323
            +EHY+ +I ++G+AG L EAEEF+E +P E  VE WE+LR FA+IHGD++LED AEELL
Sbjct: 237 SMEHYLEVINIMGNAGQLKEAEEFIENVPIELGVEAWESLRKFARIHGDLDLEDCAEELL 296

Query: 324 GDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGE-YEKMKGLNGQMREA 382
              DPSKAI DK+P PPRKKQS  NMLEEKNR ++YR +  Y+ E  EK+ GL+GQMREA
Sbjct: 297 TRFDPSKAIADKLPTPPRKKQSDVNMLEEKNRATEYRYSIPYKEEDNEKLGGLSGQMREA 356

Query: 383 GYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAI 442
           GYVPDTRYVLHDIDEE KEKALQYHSERLAIAYGLISTPPR  LRIIKNLRICGDCHNAI
Sbjct: 357 GYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAI 416

Query: 443 KIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           KIMSKIVGRELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 417 KIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834943|emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/445 (57%), Positives = 325/445 (73%), Gaps = 13/445 (2%)

Query: 40  SPVKLLCAYATPNPKVYRNTRFVKK-QRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESL 98
           SP +    +  P+P   +N  + +   RN  SN+ +     G     N+     AQ+   
Sbjct: 187 SPNQWNPQHQNPSPLNNQNENYPQPGSRNLPSNQNQSYPHQGSPSQWNNQNTNQAQIVEN 246

Query: 99  DV--------NLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRV 150
            V        +L++LC+EGKV+EA+E M +   A A    F +L +SCG+ K +E  K+V
Sbjct: 247 QVSHAPPSVADLMNLCQEGKVKEAVELMEKGVRADA--QCFYALFNSCGSPKLLEEAKKV 304

Query: 151 HELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQG 210
           H+    S F  D++LNNK++EMYG C +   AR+VFD +  R++ SWHLMI+GYA N  G
Sbjct: 305 HDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMG 364

Query: 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA 270
            DGL L+EQMRK G  P+++TFL V + CASAEAV+EGF++FE MK +YGI P  EHY+ 
Sbjct: 365 DDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVG 424

Query: 271 IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330
           II VLG +GH+IEA+EF+E+MP EP+  VWEAL N+A+IHGD++LED AEEL+  LDP K
Sbjct: 425 IIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLK 484

Query: 331 AIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY 390
           A+ +K P PP KK++A NML+ KNR+S++R+  LY+ + EK+K LNG M+EAGYVPDTRY
Sbjct: 485 AVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDD-EKLKSLNG-MKEAGYVPDTRY 542

Query: 391 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG 450
           VLHDID+EAKE+AL YHSERLAIAYGLISTP R PLRIIKNLR+CGDCHNAIKIMSKIVG
Sbjct: 543 VLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVG 602

Query: 451 RELIVRDNKRFHHFRDGKCSCGDYW 475
           RELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 603 RELIVRDNKRFHHFKDGKCSCGDYW 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428796|ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/420 (59%), Positives = 317/420 (75%), Gaps = 16/420 (3%)

Query: 66  RNPSSNEQE--PKTGTGHSQNTNDPLRGNAQLESLDV--------NLLSLCKEGKVREAI 115
           RN  SN+ +  P  G+    N  +P    AQ+    V        +L++LC+EGKV+EA+
Sbjct: 180 RNLPSNQNQSYPHQGSPSQWNNQNP--NQAQIVENQVSHAPPSVADLMNLCQEGKVKEAV 237

Query: 116 EYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175
           E M +   A A    F +L +SCG+ K +E  K+VH+    S F  D++LNNK++EMYG 
Sbjct: 238 ELMEKGVRADA--QCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGN 295

Query: 176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVV 235
           C +   AR+VFD +  R++ SWHLMI+GYA N  G DGL L+EQMRK G  P+++TFL V
Sbjct: 296 CGSMTDARRVFDHMANRDMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAV 355

Query: 236 FAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEP 295
            + CASAEAV+EGF++FE MK +YGI P  EHY+ II VLG +GH+IEA+EF+E+MP EP
Sbjct: 356 LSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLGKSGHVIEAKEFIEQMPVEP 415

Query: 296 TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNR 355
           +  VWEAL N+A+IHGD++LED AEEL+  LDP KA+ +K P PP KK++A NML+ KNR
Sbjct: 416 SAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLKAVANKTPTPPPKKRTAINMLDGKNR 475

Query: 356 VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAY 415
           +S++R+  LY+ + EK+K LNG M+EAGYVPDTRYVLHDID+EAKE+AL YHSERLAIAY
Sbjct: 476 LSEFRNPTLYKDD-EKLKSLNG-MKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 533

Query: 416 GLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
           GLISTP R PLRIIKNLR+CGDCHNAIKIMSKIVGRELIVRDNKRFHHF+DGKCSCGDYW
Sbjct: 534 GLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501199|ref|XP_003620888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355495903|gb|AES77106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/442 (59%), Positives = 313/442 (70%), Gaps = 25/442 (5%)

Query: 45  LCAYAT-------PNPKVYRNTRFVKKQRNP---SSNEQEPKTGTGHSQNTNDPLRGNAQ 94
            C YA        P      N+RF  ++  P    +   +PK    H Q         A 
Sbjct: 19  FCTYAIHHATNLHPRQNGTNNSRFTPRKTQPLRMGNPSIQPKLN--HHQ---------AP 67

Query: 95  LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELL 154
            +  +VN     +EG V + +E MGQ A A   Y  F SLL  C +LKS+E+GKRVHE L
Sbjct: 68  HQHKNVNFAHFLQEGNVNQVLELMGQGAFAD--YSDFLSLLKLCEDLKSLELGKRVHEFL 125

Query: 155 RTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGL 214
           R S F  +VEL N+LI +Y KC + + ARKVFD++  RN+ S +LMI GY  NG G DGL
Sbjct: 126 RRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDKMPDRNVGSLNLMIGGYNVNGLGIDGL 185

Query: 215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV 274
           ++F+QMR+ G  PD+ETF +V A CA  + V+EG + FE MK +YGIVPG+EHY+ ++ +
Sbjct: 186 LVFKQMRQQGVVPDEETFALVLAVCALVDGVEEGLMQFESMK-EYGIVPGMEHYLGVVNI 244

Query: 275 LGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVD 334
            G AG L EA EF+E MP E  VE+WE LRNFA+IHGD+E ED A+ELL  LDPSKA  D
Sbjct: 245 FGCAGRLDEAHEFIENMPIEAGVELWETLRNFARIHGDLEREDCADELLTVLDPSKAAAD 304

Query: 335 KIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYE-KMKGLNGQMREAGYVPDTRYVLH 393
           K+PLP RKKQSA NMLEEKNRVS+YR    Y+ E + K++GL GQMREAGYVPDTRYVLH
Sbjct: 305 KVPLPQRKKQSAINMLEEKNRVSEYRCNMPYKEEGDVKLRGLTGQMREAGYVPDTRYVLH 364

Query: 394 DIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGREL 453
           DIDEE KEKALQYHSERLAIAYGLISTPPR  LRIIKNLRICGDCHNAIKIMSKIVGREL
Sbjct: 365 DIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAIKIMSKIVGREL 424

Query: 454 IVRDNKRFHHFRDGKCSCGDYW 475
           IVRDNKRFHHF+DGKCSCGDYW
Sbjct: 425 IVRDNKRFHHFKDGKCSCGDYW 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500039|ref|XP_003518842.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Glycine max]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/376 (61%), Positives = 289/376 (76%), Gaps = 4/376 (1%)

Query: 100 VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF 159
            +L  LCKEGKV+EAIE M +   A AG   F  L D CG  KS+E  K+ H+    S F
Sbjct: 220 TDLTRLCKEGKVKEAIELMDKGVKADAG--CFDLLFDLCGQSKSLEDAKKAHDHFLQSTF 277

Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
             D+ LNNK+IEMYG C +   AR+VFD +  R++ SWHLM+ GYA N  G D L LFEQ
Sbjct: 278 RSDLTLNNKVIEMYGNCKSMTDARRVFDHMPNRDMGSWHLMLRGYAYNTNGDDALQLFEQ 337

Query: 220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279
           M + G     ET L V +ACASAE V++ FL+FE MK+ YGI PG+EHY+ ++ VLG + 
Sbjct: 338 MNELGLEITSETLLAVLSACASAEDVEDAFLHFESMKSKYGIEPGVEHYMGLLDVLGQSA 397

Query: 280 HLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLP 339
           +L EAEEF++++PFEPTV VWE L+++A++HGDV+LED  EEL+  LDPSKA+ +KIP P
Sbjct: 398 YLKEAEEFIDQLPFEPTVAVWEKLKHYARVHGDVDLEDYTEELIVSLDPSKAVANKIPTP 457

Query: 340 PRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEA 399
           P KK +A NML+ +NR+ +Y++  LY+ + EK+K L+G M+E GYVPDTRYVLHDID+EA
Sbjct: 458 PPKKYTAINMLDGRNRIIEYKNPTLYKDD-EKLKALSG-MKETGYVPDTRYVLHDIDQEA 515

Query: 400 KEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNK 459
           KE+AL YHSERLAIAYGLISTPPR PLRIIKNLR+CGDCHNAIKIMS+IVGRELIVRDNK
Sbjct: 516 KEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNK 575

Query: 460 RFHHFRDGKCSCGDYW 475
           RFHHF+DGKCSCGDYW
Sbjct: 576 RFHHFKDGKCSCGDYW 591

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
TAIR|locus:2053659	579	AT2G15690 "AT2G15690" [Arabido	0.833	0.683	0.514	9.4e-114
TAIR|locus:2127826	537	MEF8S "MEF8 similar" [Arabidop	0.825	0.729	0.401	2.1e-77
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.492	0.295	0.364	3.7e-73
TAIR|locus:2040135	615	MEF8 "AT2G25580" [Arabidopsis	0.778	0.601	0.405	4.6e-73
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.282	0.171	0.492	1.2e-69
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.282	0.170	0.543	5.9e-69
TAIR|locus:2198546	760	AT1G20230 "AT1G20230" [Arabido	0.48	0.3	0.320	8.8e-69
TAIR|locus:4010713895	595	AT4G21065 "AT4G21065" [Arabido	0.282	0.225	0.485	1.5e-68
TAIR|locus:2178188	995	MEF7 "AT5G09950" [Arabidopsis	0.467	0.223	0.353	3e-68
TAIR|locus:2049562	584	AT2G01510 "AT2G01510" [Arabido	0.475	0.386	0.354	5.3e-68

TAIR|locus:2053659 AT2G15690 "AT2G15690" [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 208/404 (51%), Positives = 287/404 (71%)

Query:    72 EQEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVF 131
             +Q+P+     +Q+ N  +   A   S++  ++ LC+    ++AIE +  D  A    + F
Sbjct:   184 QQQPQPPRSSNQSPNQ-MNEVAPPPSVE-EVMRLCQRRLYKDAIELL--DKGAMPDRECF 239

Query:   132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
               L +SC NLKS+E  K+VH+    S F  D +LNN +I M+G+C +   A++VFD +  
Sbjct:   240 VLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVD 299

Query:   192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251
             +++ SWHLM+  Y+ NG G D L LFE+M K G  P++ETFL VF ACA+   ++E FL+
Sbjct:   300 KDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLH 359

Query:   252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
             F+ MKN++GI P  EHY+ ++ VLG  GHL+EAE+++  +PFEPT + WEA+RN+A++HG
Sbjct:   360 FDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHG 419

Query:   312 DVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEK 371
             D++LED  EEL+ D+DPSKA+++KIP PP K    TNM+  K+R+ ++R+   Y+ E ++
Sbjct:   420 DIDLEDYMEELMVDVDPSKAVINKIPTPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKE 479

Query:   372 MKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKN 431
             M    G +    YVPDTR+VLHDID+EAKE+AL YHSERLAIAYG+I TPPR  L IIKN
Sbjct:   480 MAAKKGVV----YVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKN 535

Query:   432 LRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
             LR+CGDCHN IKIMSKI+GR LIVRDNKRFHHF+DGKCSCGDYW
Sbjct:   536 LRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127826 MEF8S "MEF8 similar" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 168/418 (40%), Positives = 247/418 (59%)

Query:    73 QEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS 132
             QE  TG  H Q  +    G++ L+ LD    S+C+EGKV++A+E +   +  + GY V  
Sbjct:   131 QENNTGGNHFQQDHS---GHSSLDELD----SICREGKVKKAVEII--KSWRNEGYVVDL 181

Query:   133 SLL----DSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188
               L      CG+ ++++  K VHE + +S  + D+   N +IEMY  C +   A  VF+ 
Sbjct:   182 PRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNS 241

Query:   189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
             + +RNL +W  +I  +A NGQG D +  F + ++ G  PD E F  +F AC     + EG
Sbjct:   242 MPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEG 301

Query:   249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308
              L+FE M  +YGI+P +EHY++++K+L   G+L EA  FVE M  EP V++WE L N ++
Sbjct:   302 LLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSR 359

Query:   309 IHGDVELEDRAEELLGDLDPSKAIVD-KIPLPPRK-----KQSATNMLEEKNRVSDYRST 362
             +HGD+ L DR ++++  LD S+   + K  L P K     K+    M +  N    Y + 
Sbjct:   360 VHGDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAA 419

Query:   363 -DLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGL 417
              D+ R E    Y  +K L   M E GYVP ++  LHD+D+E+K++ L  H+ER A     
Sbjct:   420 GDISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTF 479

Query:   418 ISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
             + TP R  +R++KNLR+C DCHNA+K+MSKIVGRELI RD KRFHH +DG CSC +YW
Sbjct:   480 LDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 86/236 (36%), Positives = 127/236 (53%)

Query:    95 LESLDVNLLSLCKEGKVREAIEYMG--QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHE 152
             L S +  +    + G   +AI      Q +  S      + +L +C  L ++ +GK VH+
Sbjct:   385 LPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHD 444

Query:   153 LLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGAD 212
             L+R++ F   + ++  LI MY KC +   AR++FD + K+N  +W+ MISGY  +GQG +
Sbjct:   445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQE 504

Query:   213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAII 272
              L +F +M  +G  P   TFL V  AC+ A  VKEG   F  M + YG  P ++HY  ++
Sbjct:   505 ALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMV 564

Query:   273 KVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328
              +LG AGHL  A +F+E M  EP   VWE L    +IH D  L     E L +LDP
Sbjct:   565 DILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2040135 MEF8 "AT2G25580" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 158/390 (40%), Positives = 232/390 (59%)

Query:   104 SLCKEGKVREAIEYMGQDASASAGYDV-FSSLL---DSCGNLKSIEMGKRVHELLRTSAF 159
             + CK GKV++A+  +  D  AS  Y V  S LL     CG  + ++  K VH  +  S  
Sbjct:   228 AFCKHGKVKKALYTI--DILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVS 285

Query:   160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
               D+  N+ L+EMY  C     A  VF+++ ++NL +W ++I  +A NG G D + +F +
Sbjct:   286 HLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSR 345

Query:   220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279
              ++ G  PD + F  +F AC     V EG L+FE M  DYGI P IE Y++++++    G
Sbjct:   346 FKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPG 405

Query:   280 HLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDK---- 335
              L EA EFVERMP EP V+VWE L N +++HG++EL D   E++  LDP++         
Sbjct:   406 FLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGF 465

Query:   336 IPLPPR--KKQSA---TNMLEE-KNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYV 385
             IP+     +K+S    + +L   K+ + ++R+ D    E    ++ ++ L   M E GYV
Sbjct:   466 IPVKASDVEKESLKKRSGILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYV 525

Query:   386 PDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIM 445
              +TR  LHDID+E+KE  L  HSER+A A  ++++ PR P  +IKNLR+C DCHNA+KIM
Sbjct:   526 AETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIM 585

Query:   446 SKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
             S IVGRE+I RD KRFH  ++G C+C DYW
Sbjct:   586 SDIVGREVITRDIKRFHQMKNGACTCKDYW 615

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 68/138 (49%), Positives = 98/138 (71%)

Query:   342 KKQSATNMLEEKNRVSDYRSTDLYRGEYEK----MKGLNGQMREAGYVPDTRYVLHDIDE 397
             KK    + +E +N+   +   D +  E ++    ++ L+ +M++AGYV  T  VLHD++E
Sbjct:   644 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEE 703

Query:   398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD 457
             E KE+ ++YHSERLA+AYG++      P+R+IKNLR+C DCHNAIK M++I GR +I+RD
Sbjct:   704 EEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRD 763

Query:   458 NKRFHHFRDGKCSCGDYW 475
             N RFHHF+DG CSCGDYW
Sbjct:   764 NNRFHHFKDGSCSCGDYW 781

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 5.9e-69, Sum P(2) = 5.9e-69
 Identities = 75/138 (54%), Positives = 100/138 (72%)

Query:   342 KKQSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDE 397
             KK+   + +E K++V  +   D    E    Y  MK +  ++++ GYVPDT  VLHD++E
Sbjct:   649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEE 708

Query:   398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD 457
             E KE+ L++HSE+LAIA+GLISTP +  LRI+KNLR+C DCH AIK +SK+VGRE+IVRD
Sbjct:   709 EVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRD 768

Query:   458 NKRFHHFRDGKCSCGDYW 475
               RFHHF+DG CSC DYW
Sbjct:   769 TTRFHHFKDGFCSCRDYW 786

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 8.8e-69, Sum P(3) = 8.8e-69
 Identities = 74/231 (32%), Positives = 130/231 (56%)

Query:   101 NLLSLCKE-GKVREAIEYMG--QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS 157
             ++++ C + GK  EA+E     Q A     +    S+L +CGN+ ++  G+  H      
Sbjct:   358 SIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRV 417

Query:   158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLF 217
               + +V + + LI+MY KC    L++ VF+ +  +NL  W+ +++G++ +G+  + + +F
Sbjct:   418 HLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIF 477

Query:   218 EQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277
             E + +T   PD  +F  + +AC       EG+ YF++M  +YGI P +EHY  ++ +LG 
Sbjct:   478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGR 537

Query:   278 AGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328
             AG L EA + ++ MPFEP   VW AL N  ++  +V+L + A E L  L+P
Sbjct:   538 AGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
 Identities = 67/138 (48%), Positives = 94/138 (68%)

Query:   342 KKQSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDE 397
             KK    +++E  NRV ++   D    +    Y K+K + G++R  GYVP    V  D++E
Sbjct:   458 KKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 517

Query:   398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD 457
             E KE A+ YHSE++AIA+ LISTP R P+ ++KNLR+C DCH AIK++SK+  RE++VRD
Sbjct:   518 EEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 577

Query:   458 NKRFHHFRDGKCSCGDYW 475
               RFHHF++G CSC DYW
Sbjct:   578 RSRFHHFKNGSCSCQDYW 595

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.0e-68, Sum P(2) = 3.0e-68
 Identities = 80/226 (35%), Positives = 128/226 (56%)

Query:   110 KVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL 169
             K  + + +M Q       + +++++L +  ++ ++E G  VH     +    DV + + L
Sbjct:   602 KALDLVWFMLQTGQRLDSF-MYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSAL 660

Query:   170 IEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-D 228
             ++MY KC     A + F+ +  RN  SW+ MISGYA +GQG + L LFE M+  G  P D
Sbjct:   661 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPD 720

Query:   229 KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFV 288
               TF+ V +AC+ A  ++EGF +FE M + YG+ P IEH+  +  VLG AG L + E+F+
Sbjct:   721 HVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFI 780

Query:   289 ERMPFEPTVEVWEA-LRNFAQIHG-DVELEDRAEELLGDLDPSKAI 332
             E+MP +P V +W   L    + +G   EL  +A E+L  L+P  A+
Sbjct:   781 EKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAV 826

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 5.3e-68, Sum P(2) = 5.3e-68
 Identities = 82/231 (35%), Positives = 133/231 (57%)

Query:   103 LSLCKE-GKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAF 159
             L++C + G    A+EY  +  + +  +D F+  S+L +CG L S+E+G+ +++  R    
Sbjct:   182 LAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEI 241

Query:   160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
               ++ + N  ++M+ KC NT  AR +F+++++RN+ SW  MI GYA NG   + L LF  
Sbjct:   242 DCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTT 301

Query:   220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIM--KNDYGIVPGIEHYIAIIKVLGS 277
             M+  G  P+  TFL V +AC+ A  V EG  YF +M   ND  + P  EHY  ++ +LG 
Sbjct:   302 MQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGR 361

Query:   278 AGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328
             +G L EA EF+++MP EP   +W AL     +H D+ L  +  ++L +  P
Sbjct:   362 SGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAP 412

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQE5	PP153_ARATH	No assigned EC number	0.5401	0.7747	0.6355	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	475
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-85
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-75
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	1e-22
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-21
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-16
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-14
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-04

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  274 bits (703), Expect = 6e-85
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 25/370 (6%)

Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
           FS ++     L  +E  K+ H  L  + F  D+  N  L+++Y K      AR VFD++ 
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387

Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
           ++NL SW+ +I+GY  +G+G   + +FE+M   G  P+  TFL V +AC  +   ++G+ 
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447

Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
            F+ M  ++ I P   HY  +I++LG  G L EA   + R PF+PTV +W AL    +IH
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507

Query: 311 GDVELEDRAEELLGDLDPSK----AIVDKIPLPPRKKQSATNMLEEKNRV---------- 356
            ++EL   A E L  + P K     ++  +     ++  A  ++E   R           
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567

Query: 357 -----SDYR-----STDLYRGE-YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
                 D+             E Y+K+  L  ++ E GYV +   +L D+DE+ ++ + +
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627

Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
           YHSE+LAIA+GLI+T    PL+I ++ RIC DCH  IK ++ +  RE++VRD  RFHHF+
Sbjct: 628 YHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687

Query: 466 DGKCSCGDYW 475
            GKCSCGDYW
Sbjct: 688 LGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  251 bits (643), Expect = 6e-75
 Identities = 125/376 (33%), Positives = 200/376 (53%), Gaps = 43/376 (11%)

Query: 131 FSSLLDSCGNLKSIEMGKRVH-ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
             + L +C  + ++  GK +H  +LRT        L N L+++Y +C     A   F+  
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFN-S 549

Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
            ++++ SW+++++GY A+G+G+  + LF +M ++G +PD+ TF+ +  AC+ +  V +G 
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609

Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
            YF  M+  Y I P ++HY  ++ +LG AG L EA  F+ +MP  P   VW AL N  +I
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669

Query: 310 HGDVELEDRAEELLGDLDPSKA-----------------IVDKIPLPPRKK----QSATN 348
           H  VEL + A + + +LDP+                    V ++    R+         +
Sbjct: 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729

Query: 349 MLEEKNRVSDYRSTDLYR-----------GEYEKMKGLNGQMREAGYVPDTRYVLHDIDE 397
            +E K +V  + + D              G YEKMK       E+  + +         E
Sbjct: 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI--------E 781

Query: 398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD 457
            +K+     HSERLAIA+GLI+T P MP+ + KNL +C +CHN +K +SKIV RE+ VRD
Sbjct: 782 VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRD 841

Query: 458 NKRFHHFRDGKCSCGD 473
            ++FHHF+DG+CSCGD
Sbjct: 842 TEQFHHFKDGECSCGD 857

Length = 857

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 13/94 (13%)

Query: 379 MREAGYVPDTRYVLHDIDEE------AKEKALQYHSERLAIAYGLISTPPRMPLRIIKNL 432
           ++  G VP+T+ + HD+D E       K K L  H+E+ A+AYGL++T      RIIK L
Sbjct: 29  IKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTT------RIIKVL 82

Query: 433 -RICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
            R+CGDCH   + ++K  GRE+IVRD  RFHHF+
Sbjct: 83  KRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 98.0 bits (244), Expect = 1e-21
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 10/177 (5%)

Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
           F  +L +CG +  +  G+ VH  +    F  DV++ N LI MY KC +   AR VFD++ 
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249

Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
           +R+  SW+ MISGY  NG+  +GL LF  MR+    PD  T   V +AC   E + +  L
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---ELLGDERL 306

Query: 251 YFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
             E+  + Y +  G    +    ++I++  S G   EAE+   RM  +  V  W A+
Sbjct: 307 GREM--HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-WTAM 360

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 80.3 bits (198), Expect = 6e-16
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 24/201 (11%)

Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
           +S++ +C  L    +G+ +H  +  + F  DV + N LI+MY    +   A KVF ++  
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351

Query: 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251
           ++  SW  MISGY  NG     L  +  M +    PD+ T   V +ACA       G L 
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-----GDLD 406

Query: 252 FEIMKNDYGIVPGIEHYI----AIIKVLGSAGHLIEAEEFVERMPFEPTVEVW------- 300
             +  ++     G+  Y+    A+I++      + +A E    +P E  V  W       
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGL 465

Query: 301 -------EALRNFAQIHGDVE 314
                  EAL  F Q+   ++
Sbjct: 466 RLNNRCFEALIFFRQMLLTLK 486

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 77.6 bits (191), Expect = 4e-15
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 13/271 (4%)

Query: 73  QEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-- 130
              +         +D         SL   +  L   G+ REA+E   +   A   + +  
Sbjct: 66  IRIEVSESKDARLDDTQ-IRKSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLPA 123

Query: 131 --FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188
             + +L+++C  LKSI   K V+  + +S F  D  + N+++ M+ KC     AR++FD+
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183

Query: 189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
           + +RNL+SW  +I G    G   +   LF +M + G   +  TF+V+  A A   + + G
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243

Query: 249 F-LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFA 307
             L+  ++K   G+V       A+I +    G + +A    + MP E T   W ++    
Sbjct: 244 QQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGY 300

Query: 308 QIHGDVELEDRAEELLGDLDPSKAIVDKIPL 338
            +HG  E    A  L  ++  S   +D+   
Sbjct: 301 ALHGYSE---EALCLYYEMRDSGVSIDQFTF 328

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 77.6 bits (191), Expect = 5e-15
 Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 22/252 (8%)

Query: 44  LLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPKTGTGHSQNTNDPLRGNAQLESLDVNLL 103
            L ++  PN   Y N    K+ R  S            S +T+D    N+QL        
Sbjct: 17  QLASHKAPNVLPYWNFHGRKRSRGLSV-------AASSSSSTHDS---NSQL-------R 59

Query: 104 SLCKEGKVREAIEYMG--QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK 161
           +LC  G++ +A++ +   Q+       D + +L   C   +++E G RV     +S    
Sbjct: 60  ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119

Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
            V L N ++ M+ +      A  VF ++ +R+L SW++++ GYA  G   + L L+ +M 
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179

Query: 222 KTGPHPDKETFLVVFAACASAEAVKEGF-LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH 280
             G  PD  TF  V   C     +  G  ++  +++  +G    ++   A+I +    G 
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR--FGFELDVDVVNALITMYVKCGD 237

Query: 281 LIEAEEFVERMP 292
           ++ A    +RMP
Sbjct: 238 VVSARLVFDRMP 249

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
           +S+L +C  L  +++G ++HEL      +  V + N LIEMY KC     A +VF  + +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452

Query: 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
           +++ SW  +I+G   N +  + L+ F QM  T   P+  T +   +ACA   A+  G
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 109 GKVREAIEY---MGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL 165
           G  REA      M +D S  A    F  +L +   L S   G+++H  +  +  V D  +
Sbjct: 203 GNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261

Query: 166 NNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225
           +  LI+MY KC +   AR VFD + ++   +W+ M++GYA +G   + L L+ +MR +G 
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

Query: 226 HPDKETF---LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282
             D+ TF   + +F+  A  E  K+   +  +++  + +   I    A++ +    G + 
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQA--HAGLIRTGFPL--DIVANTALVDLYSKWGRME 377

Query: 283 EAEEFVERMPFEPTVEVWEAL 303
           +A    +RMP +  +  W AL
Sbjct: 378 DARNVFDRMPRKNLIS-WNAL 397

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
           F+ L+  C + + I+   RV  L++ +    D +L   LI    K        +VF ++ 
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499

Query: 191 ----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK 246
               + N+ ++  +I G A  GQ A     +  MR     PD+  F  + +AC  + AV 
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559

Query: 247 EGFLYFEIMKND-YGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP---FEPTVEVWEA 302
             F     MK + + I P      A++K   +AG +  A+E  + +     + T EV+  
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619

Query: 303 LRNFAQIHGDVE 314
             N     GD +
Sbjct: 620 AVNSCSQKGDWD 631

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240
           ++ +++ +I GY   G+  + L LF +M+K G  P+  T+ ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.76
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.72
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PF13041	50	PPR_2: PPR repeat family	99.59
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.48
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.47
PF13041	50	PPR_2: PPR repeat family	99.42
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.34
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.3
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.23
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.13
PF12854	34	PPR_1: PPR repeat	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.08
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.05
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.04
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.99
PF12854	34	PPR_1: PPR repeat	98.99
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.95
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.93
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.89
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.89
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.88
PRK12370	553	invasion protein regulator; Provisional	98.88
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.87
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.86
KOG1126	638	consensus DNA-binding cell division cycle control	98.81
PRK12370	553	invasion protein regulator; Provisional	98.79
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.64
PRK14574	822	hmsH outer membrane protein; Provisional	98.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.53
PRK11189	296	lipoprotein NlpI; Provisional	98.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.5
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.44
KOG1126	638	consensus DNA-binding cell division cycle control	98.43
PRK11189	296	lipoprotein NlpI; Provisional	98.42
KOG1129	478	consensus TPR repeat-containing protein [General f	98.38
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.38
PRK14574	822	hmsH outer membrane protein; Provisional	98.37
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.26
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.22
KOG2003	840	consensus TPR repeat-containing protein [General f	98.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.19
KOG1129	478	consensus TPR repeat-containing protein [General f	98.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.15
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.12
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.12
PLN02789	320	farnesyltranstransferase	98.09
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.98
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.98
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.97
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.95
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.94
KOG2076	895	consensus RNA polymerase III transcription factor	97.91
KOG2003	840	consensus TPR repeat-containing protein [General f	97.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.86
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.84
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.79
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.77
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.74
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.73
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.72
KOG2076	895	consensus RNA polymerase III transcription factor	97.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.7
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.69
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.67
PRK15359	144	type III secretion system chaperone protein SscB;	97.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.64
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.61
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.6
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.59
PRK15359	144	type III secretion system chaperone protein SscB;	97.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.53
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.47
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.42
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.41
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.41
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.34
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.33
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.33
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.31
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.17
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.15
PRK04841	903	transcriptional regulator MalT; Provisional	97.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.12
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.07
KOG1125	579	consensus TPR repeat-containing protein [General f	97.04
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.91
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.86
PRK04841	903	transcriptional regulator MalT; Provisional	96.85
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.85
PLN02789	320	farnesyltranstransferase	96.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.81
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.81
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.8
KOG1125	579	consensus TPR repeat-containing protein [General f	96.78
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.69
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.65
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.63
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.55
KOG3941	406	consensus Intermediate in Toll signal transduction	96.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.53
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.49
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.42
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.42
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.4
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.38
KOG3941	406	consensus Intermediate in Toll signal transduction	96.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.21
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.2
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.89
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.85
PF12688	120	TPR_5: Tetratrico peptide repeat	95.82
KOG0553	304	consensus TPR repeat-containing protein [General f	95.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.72
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.68
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.65
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.49
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.47
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.17
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.08
PF12688	120	TPR_5: Tetratrico peptide repeat	95.02
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.97
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.86
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.59
KOG0553	304	consensus TPR repeat-containing protein [General f	94.57
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.54
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.5
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.38
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.24
PRK10803	263	tol-pal system protein YbgF; Provisional	93.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.87
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.85
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.73
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	93.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	93.37
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.34
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.32
PRK10803	263	tol-pal system protein YbgF; Provisional	93.01
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.82
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.81
PF13371	73	TPR_9: Tetratricopeptide repeat	92.51
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.32
PF13371	73	TPR_9: Tetratricopeptide repeat	92.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	91.9
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.79
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.07
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	90.72
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	90.52
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	90.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	90.23
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.16
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	89.06
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.58
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.35
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	88.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.48
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.42
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.68
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.68
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.61
COG4105	254	ComL DNA uptake lipoprotein [General function pred	86.15
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	85.6
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.41
PF13512	142	TPR_18: Tetratricopeptide repeat	85.32
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	85.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	84.88
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.72
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	84.55
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.52
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.42
COG4700	251	Uncharacterized protein conserved in bacteria cont	84.18
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	83.81
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	83.71
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	83.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.97
PRK11906	458	transcriptional regulator; Provisional	82.93
PRK15331	165	chaperone protein SicA; Provisional	82.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	82.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	82.01
PHA02875	413	ankyrin repeat protein; Provisional	82.01
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.99
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	81.53
PF13428	44	TPR_14: Tetratricopeptide repeat	81.09
PF13428	44	TPR_14: Tetratricopeptide repeat	80.93
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	80.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.84
KOG4555	175	consensus TPR repeat-containing protein [Function	80.6

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.7e-74  Score=615.75  Aligned_cols=391  Identities=34%  Similarity=0.582  Sum_probs=370.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373           85 TNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD  162 (475)
Q Consensus        85 ~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~  162 (475)
                      .++.....+|+++||+||.+|++.|++++|+++|++|...+  ||.+||+++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus       280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d  359 (697)
T PLN03081        280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD  359 (697)
T ss_pred             HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence            33344457899999999999999999999999999997655  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA  242 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~  242 (475)
                      ..+||+||++|+|+|++++|.++|++|.+||++|||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.
T Consensus       360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373          243 EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       243 g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  322 (475)
                      |++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.++|++|++.||..+|++||.+|+++|+++.|+++.+.
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~  519 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK  519 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            99999999999999778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCChh---------------------hhccCCCCCcccccceeEEecCeEEEEEccCcc---chH-HHHHHHHHH
Q 038373          323 LGDLDPSKAI---------------------VDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLY---RGE-YEKMKGLNG  377 (475)
Q Consensus       323 l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~a~~l~~  377 (475)
                      +.++.|++..                     .+.|...+..+.++++|++..+.++.|..++..   ..+ ++++.++..
T Consensus       520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~  599 (697)
T PLN03081        520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK  599 (697)
T ss_pred             HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence            9999987531                     246777888899999999999999999988633   333 788899999


Q ss_pred             HHHHcCcccCCccccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEec
Q 038373          378 QMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD  457 (475)
Q Consensus       378 ~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d  457 (475)
                      +|++.|+.||.......+++..++..+..|+|++|++||++.++++.+++|++|++.|||||.|.|+++++.+|+||+||
T Consensus       600 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd  679 (697)
T PLN03081        600 EISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRD  679 (697)
T ss_pred             HHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEec
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCcCCCCCCC
Q 038373          458 NKRFHHFRDGKCSCGDYW  475 (475)
Q Consensus       458 ~~~~~~~~~g~cs~~~~~  475 (475)
                      ..|||||++|.|||||||
T Consensus       680 ~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        680 ASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             CCccccCCCCcccccccC
Confidence            999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.5e-67  Score=578.62  Aligned_cols=397  Identities=31%  Similarity=0.559  Sum_probs=366.8

Q ss_pred             CCCCCccccccCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 038373           75 PKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGKRVHEL  153 (475)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  153 (475)
                      .+.|..+.+...+.....+|+++||+||.+|++.|+.++|+++|++|.. ..||.+||+++|.+|++.|+++.+.++|..
T Consensus       435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            3344444444444445568999999999999999999999999999875 349999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          154 LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       154 m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                      |.+.|+.+|..++|+||++|+|+|++++|.++|++| .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  593 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI  593 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~  313 (475)
                      ++|.+|++.|++++|.++|+.|.+++|+.||..+|++||++|++.|++++|.+++++|+++||..+|++|+.+|..+|++
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~  673 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV  673 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence            99999999999999999999999778999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCChhh---------------------hccCCCCCcccccceeEEecCeEEEEEccCcc---chH-
Q 038373          314 ELEDRAEELLGDLDPSKAIV---------------------DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLY---RGE-  368 (475)
Q Consensus       314 ~~a~~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-  368 (475)
                      +.++.+.+.+.+++|++...                     ..|...++++.++++|++.++.+|.|..++..   ..+ 
T Consensus       674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i  753 (857)
T PLN03077        674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI  753 (857)
T ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHH
Confidence            99999999999999987532                     45678889999999999999999999988743   344 


Q ss_pred             HHHHHHHHHHHHHcCcccCCccccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhh
Q 038373          369 YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKI  448 (475)
Q Consensus       369 ~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m  448 (475)
                      ++...+|..+|++.|+.||+.... ..++..++..+..|+|++|++||++.++++.+++|++|++.|||||.|.|+++++
T Consensus       754 ~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~  832 (857)
T PLN03077        754 NTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI  832 (857)
T ss_pred             HHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHH
Confidence            777888999999999999987655 4467788999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEecCCccccccCCcCCCCC
Q 038373          449 VGRELIVRDNKRFHHFRDGKCSCGD  473 (475)
Q Consensus       449 ~~~~i~~~d~~~~~~~~~g~cs~~~  473 (475)
                      .+|+||+||..|||||++|.|||||
T Consensus       833 ~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        833 VRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             hCeEEEEecCCcceeCCCCcccCCC
Confidence            9999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.4e-53  Score=454.17  Aligned_cols=374  Identities=19%  Similarity=0.232  Sum_probs=269.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373           90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN  167 (475)
Q Consensus        90 ~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  167 (475)
                      ...||+++||+||.+|++.|++++|+++|++|...+  ||..||+.+|.+|++.|.++.+.+++..|.+.|+.||..+||
T Consensus       184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n  263 (697)
T PLN03081        184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC  263 (697)
T ss_pred             CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence            345666666666666666666666666666665433  666666666666666666666666666667777778888889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      +||++|+|+|++++|.++|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.||.+||+++|.+|++.|++++
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      |.++|..|.+ .|+.||..+||+||++|+++|++++|.++|++|. +||++|||+||.+|+++|+.++|.+.++.|.+  
T Consensus       344 a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~--  419 (697)
T PLN03081        344 AKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIA--  419 (697)
T ss_pred             HHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            9999999995 5999999999999999999999999999999997 68999999999999999999666666555543  


Q ss_pred             CCChhhhccCCCCCc---------cc---ccceeEEec------CeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc
Q 038373          328 PSKAIVDKIPLPPRK---------KQ---SATNMLEEK------NRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR  389 (475)
Q Consensus       328 ~~~~~~~~~~~~~~~---------~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~  389 (475)
                       .+..|+..++..+.         ..   .+..+....      ..+...+...++.|++++|.+++++|   ++.||..
T Consensus       420 -~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~  495 (697)
T PLN03081        420 -EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN  495 (697)
T ss_pred             -hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence             34434333211000         00   000000000      00111122223344444444444332   3445555


Q ss_pred             cccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceE--------EEecCCcc
Q 038373          390 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGREL--------IVRDNKRF  461 (475)
Q Consensus       390 t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i--------~~~d~~~~  461 (475)
                      +|.+++.+|...+.+....+.....+++.+.....++.+++.|+++|+.++|.+++++|.++|+        +.-+. ..
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~-~~  574 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK-QD  574 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC-eE
Confidence            5555555554444433322222233444443345677899999999999999999999999975        33344 34


Q ss_pred             ccccCCcCCCC
Q 038373          462 HHFRDGKCSCG  472 (475)
Q Consensus       462 ~~~~~g~cs~~  472 (475)
                      |.|..|+.+..
T Consensus       575 ~~f~~~d~~h~  585 (697)
T PLN03081        575 HSFFSGDRLHP  585 (697)
T ss_pred             EEEccCCCCCc
Confidence            88988876653

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.9e-52  Score=456.84  Aligned_cols=383  Identities=19%  Similarity=0.218  Sum_probs=314.4

Q ss_pred             CCCccccccCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038373           77 TGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELL  154 (475)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m  154 (475)
                      .|..+.+..++.....||+++||+||.+|++.|++++|+++|++|...+  ||.+||+++|.+|++.|+++.|.++|.+|
T Consensus       235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~  314 (857)
T PLN03077        235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV  314 (857)
T ss_pred             CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            3444444444455567999999999999999999999999999998755  99999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373          155 RTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV  234 (475)
Q Consensus       155 ~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~  234 (475)
                      .+.|+.||..+||+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||.+||++
T Consensus       315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~  394 (857)
T PLN03077        315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS  394 (857)
T ss_pred             HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 038373          235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE  314 (475)
Q Consensus       235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~  314 (475)
                      +|.+|++.|++++|.++|+.|.+ .|+.||..+||+||++|+++|++++|.++|++|. ++|+++||+||.+|++.|+.+
T Consensus       395 ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~  472 (857)
T PLN03077        395 VLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCF  472 (857)
T ss_pred             HHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHH
Confidence            99999999999999999999995 5999999999999999999999999999999997 689999999999999999997


Q ss_pred             HHHHHHHHHhc-cCCCChhhhccC--------------------CCCCccc------------------cc---ceeEEe
Q 038373          315 LEDRAEELLGD-LDPSKAIVDKIP--------------------LPPRKKQ------------------SA---TNMLEE  352 (475)
Q Consensus       315 ~a~~~~~~l~~-~~~~~~~~~~~~--------------------~~~~~~~------------------~~---~~~~~~  352 (475)
                      +|.+.++.|.+ +.|+..++..+.                    ..+....                  .+   +..+ .
T Consensus       473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~  551 (857)
T PLN03077        473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E  551 (857)
T ss_pred             HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence            77777666543 334433221110                    0000000                  00   0000 1


Q ss_pred             cCeE--EEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHhhhhhhH---HHHHHhhcccCCCCCchh
Q 038373          353 KNRV--SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSE---RLAIAYGLISTPPRMPLR  427 (475)
Q Consensus       353 ~~~~--~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~---~l~~~~~~~~~~~~~~~~  427 (475)
                      .+.+  +..+.+.+.+|+.++|+++|++|.+.|+.||.+||+.+|.+|++.+.+....+   .+...+|+.+.. ..+.+
T Consensus       552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~  630 (857)
T PLN03077        552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYAC  630 (857)
T ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHH
Confidence            1111  12223446688999999999999999999999999999999999887754333   344456644443 35569


Q ss_pred             eeccccccccccchhHHHhhhcCceEEEecCCccccccCC
Q 038373          428 IIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDG  467 (475)
Q Consensus       428 ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g  467 (475)
                      +++.|+++|++++|.++|++|+.    ..|..+|..+..+
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m~~----~pd~~~~~aLl~a  666 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKMPI----TPDPAVWGALLNA  666 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHCCC----CCCHHHHHHHHHH
Confidence            99999999999999999999973    3344455554443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-51  Score=446.78  Aligned_cols=358  Identities=19%  Similarity=0.198  Sum_probs=264.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .++.+.++.++.+|++.|.+++|+++|+.|..  ||..||+.||++|++.|+++.|.++|++|.+.|+.||..+||+||+
T Consensus       403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~  480 (1060)
T PLN03218        403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS  480 (1060)
T ss_pred             CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            35666667777777777777777777777766  8888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          172 MYGKCCNTRLARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      +|+++|++++|.++|++|.    .||++|||+||.+|++.|++++|+++|++|.+.|+.||.+||++||.+|++.|++++
T Consensus       481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de  560 (1060)
T PLN03218        481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR  560 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            8888888888888888887    478888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhh-CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          248 GFLYFEIMKND-YGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       248 a~~~~~~m~~~-~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      |.++|++|... .|+.||.++|++||++|+++|++++|.++|++|   ++.|+..+||+||.+|++.|++++|.++++.|
T Consensus       561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            88888888642 478888888888888888888888888888888   67788888888888888888885555555444


Q ss_pred             hccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHh
Q 038373          324 GDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKA  403 (475)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~  403 (475)
                      .   ..+..|+..++.                  .++.+.++.|++++|.++|++|.+.|+.||..||+.+|+++++.+.
T Consensus       641 ~---~~Gv~PD~~Tyn------------------sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~  699 (1060)
T PLN03218        641 K---KKGVKPDEVFFS------------------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN  699 (1060)
T ss_pred             H---HcCCCCCHHHHH------------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            3   333333322111                  1122234466677777777777777777777777777777777666


Q ss_pred             hhhhhHHHHHH--hhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcCCCCCC
Q 038373          404 LQYHSERLAIA--YGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDY  474 (475)
Q Consensus       404 l~~~~~~l~~~--~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~cs~~~~  474 (475)
                      +....+.....  .|+.++ ..+.+.+|++|+++|+.++|.++|++|...|+ ..|..+|..++.+.|.+|++
T Consensus       700 ~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        700 WKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCH
Confidence            54443322221  221111 12345777777777777777777777777774 34555777777777776653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-51  Score=446.79  Aligned_cols=357  Identities=15%  Similarity=0.182  Sum_probs=309.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038373           88 PLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL  165 (475)
Q Consensus        88 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  165 (475)
                      +....||..+||.||.+|++.|++++|+++|++|...|  ||.++|++||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus       430 ~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT  509 (1060)
T PLN03218        430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT  509 (1060)
T ss_pred             HHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence            33445999999999999999999999999999998766  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRK--TGPHPDKETFLVVFAAC  239 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~--~g~~pd~~t~~~li~~~  239 (475)
                      ||+||++|++.|++++|.++|++|.    .||.+|||+||.+|++.|++++|+++|++|..  .|+.||.+||++||.+|
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999997    48999999999999999999999999999986  68999999999999999


Q ss_pred             HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHH
Q 038373          240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a  316 (475)
                      ++.|++++|.++|+.|.+ .|+.|+..+||+||++|++.|++++|.++|++|   |+.||.+||++||.+|++.|++++|
T Consensus       590 ~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999995 599999999999999999999999999999999   8899999999999999999999776


Q ss_pred             HHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccccc
Q 038373          317 DRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDID  396 (475)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~  396 (475)
                      .++++.+.+   .+..++..+                  ++..+.+.++.|++++|.++|++|.+.|+.||.+||+.+|.
T Consensus       669 ~~l~~eM~k---~G~~pd~~t------------------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~  727 (1060)
T PLN03218        669 FEILQDARK---QGIKLGTVS------------------YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT  727 (1060)
T ss_pred             HHHHHHHHH---cCCCCCHHH------------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            666666554   333222111                  11223344668889999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHH--hhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcC
Q 038373          397 EEAKEKALQYHSERLAIA--YGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKC  469 (475)
Q Consensus       397 ~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~c  469 (475)
                      ++++.+.+....+.+...  .|+.++ ..+...+++.+++.|+.++|.++|.+|.+.|+. .|..+|+.++ |.|
T Consensus       728 gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLI-glc  799 (1060)
T PLN03218        728 ALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCIT-GLC  799 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH-HHH
Confidence            999988776655544432  232222 234568899999999999999999999999854 4555777765 444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.78  E-value=8.3e-17  Score=161.75  Aligned_cols=274  Identities=12%  Similarity=0.012  Sum_probs=206.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC--C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA--G---YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN  167 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p--~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  167 (475)
                      .+..+|..+...+.+.|++++|..+++.+....+  +   ..++..+...+.+.|++++|..+|..+.+.. ..+..+++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~  145 (389)
T PRK11788         67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ  145 (389)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence            3456788888889999999999999888765331  1   2457788888889999999999999988753 45678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRKRN--------LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~~~--------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      .++..|.+.|++++|.++|+.+.+.+        ...|..+...+.+.|++++|...|+++.+.. ..+...+..+...+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  224 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence            99999999999999999999886421        1245677778888999999999999988753 22355777888889


Q ss_pred             HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHH
Q 038373          240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDR  318 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~  318 (475)
                      .+.|++++|.++++++.+. +......+++.++..|++.|++++|.+.++++ ...|+...+..+...+.+.|+++.|..
T Consensus       225 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~  303 (389)
T PRK11788        225 LAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA  303 (389)
T ss_pred             HHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999998843 22222456788899999999999999999988 456777777888888999999988888


Q ss_pred             HHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc
Q 038373          319 AEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR  389 (475)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~  389 (475)
                      .++...+..|+......+...                   +. .....|+..+++.++++|.+.+++||..
T Consensus       304 ~l~~~l~~~P~~~~~~~l~~~-------------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        304 LLREQLRRHPSLRGFHRLLDY-------------------HL-AEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHhCcCHHHHHHHHHH-------------------hh-hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            877766666655433211100                   00 0011456788999999999999998887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.76  E-value=1.9e-16  Score=159.20  Aligned_cols=267  Identities=14%  Similarity=0.070  Sum_probs=213.3

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcC
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCC  177 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g  177 (475)
                      ...+...|++++|+..|.++....|+. .++..+...+...|++++|..+++.+.+.+-.++   ..++..|...|.+.|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            335678899999999999998877755 4688899999999999999999999988643222   357889999999999


Q ss_pred             CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHH
Q 038373          178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK----ETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~  250 (475)
                      ++++|..+|+++.+   .+..+|+.++..|.+.|++++|.++|++|.+.+..++.    ..|..+...+.+.|++++|..
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999975   46789999999999999999999999999986644432    245667778889999999999


Q ss_pred             HHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          251 YFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT--VEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       251 ~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      +++++.+.   .| +...+..+...|.+.|++++|.++|+++ ...|+  ..+++.+..+|...|+.+.|...++.+.+.
T Consensus       202 ~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        202 LLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999842   34 4567888899999999999999999998 33454  456889999999999999888888887777


Q ss_pred             CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccccc
Q 038373          327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDID  396 (475)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~  396 (475)
                      .|+......                       ........|++++|..+++++.+.  .||..++..++.
T Consensus       279 ~p~~~~~~~-----------------------la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~  323 (389)
T PRK11788        279 YPGADLLLA-----------------------LAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD  323 (389)
T ss_pred             CCCchHHHH-----------------------HHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence            665432110                       111223367799999999988865  688777765554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.72  E-value=2.4e-15  Score=166.48  Aligned_cols=234  Identities=10%  Similarity=0.002  Sum_probs=178.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+..+++.+...+.+.|+.++|..+|+++....| +...+..+...+.+.|++++|.++++.+.+.. ..+..+|..+..
T Consensus       531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  609 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR  609 (899)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4667888888888888888888888887765443 44557778888888888888888888887654 566778888888


Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a  248 (475)
                      +|.+.|++++|...|+.+.+  | +...|..+...|.+.|++++|...|+++.+.. ..+..++..+...+...|++++|
T Consensus       610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  688 (899)
T TIGR02917       610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA  688 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888887753  2 56678888888888888888888888887642 23467788888888888888888


Q ss_pred             HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      .++++.+.+. + ..+...+..+...|.+.|++++|.+.|+++ ...|+..++..+...+.+.|+.++|.+.++.+.+..
T Consensus       689 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       689 KKIAKSLQKQ-H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH  766 (899)
T ss_pred             HHHHHHHHhh-C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            8888888743 2 345666777788888888888888888877 445666777777788888888877777777666666


Q ss_pred             CCC
Q 038373          328 PSK  330 (475)
Q Consensus       328 ~~~  330 (475)
                      |..
T Consensus       767 ~~~  769 (899)
T TIGR02917       767 PND  769 (899)
T ss_pred             CCC
Confidence            554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=8.8e-16  Score=169.90  Aligned_cols=373  Identities=13%  Similarity=0.039  Sum_probs=251.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ..+...+..+...+.+.|++++|.+.|+++....| +..++..+...+.+.|+.++|..++..+.+.+ ..+...+..+.
T Consensus       496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  574 (899)
T TIGR02917       496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA  574 (899)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence            34566788888999999999999999998776554 55678889999999999999999999998775 56778889999


Q ss_pred             HHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      ..|.+.|++++|..+++.+.+   .+..+|..+...|.+.|++++|...|+++.+.. ..+...+..+...+.+.|++++
T Consensus       575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  653 (899)
T TIGR02917       575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK  653 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999873   367899999999999999999999999998753 2356788899999999999999


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      |..+++.+.+.  ...+..++..+...+.+.|++++|.++++.+  ....+...|..+...+...|+++.|.+.++...+
T Consensus       654 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  731 (899)
T TIGR02917       654 AITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK  731 (899)
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999998832  2335788999999999999999999999999  2235677888888899999999988888888777


Q ss_pred             cCCCChhhhcc----CCCCCccc---ccceeEEec--Ce--EEEEEccCccchHHHHHHHHHHHHHHcCcccCCcc-ccc
Q 038373          326 LDPSKAIVDKI----PLPPRKKQ---SATNMLEEK--NR--VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY-VLH  393 (475)
Q Consensus       326 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~--~~--~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t-~~~  393 (475)
                      ..|.......+    ...+....   .....+...  +.  ...........|++++|...|+++.+..  |+... +..
T Consensus       732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~  809 (899)
T TIGR02917       732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNN  809 (899)
T ss_pred             hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            76665321100    00000000   000000000  00  0000011122566888888888887653  44322 222


Q ss_pred             cccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcCCCCC
Q 038373          394 DIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGD  473 (475)
Q Consensus       394 ~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~cs~~~  473 (475)
                      +.......+. ....+.+..+..+.+..+.....+...+..-|+.++|.+.+.++...+.  .+...+-+.....+..|+
T Consensus       810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP--EAAAIRYHLALALLATGR  886 (899)
T ss_pred             HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCC
Confidence            2111111111 1111222223332222221112333445666888888888888776542  244444444444444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.59  E-value=3.7e-15  Score=102.59  Aligned_cols=50  Identities=28%  Similarity=0.584  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      ||+++||+||++|++.|++++|+++|++|++.|+.||..||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999985

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=2e-11  Score=115.95  Aligned_cols=227  Identities=15%  Similarity=0.260  Sum_probs=177.6

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhccc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDAS--ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL  169 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L  169 (475)
                      ..+..||.+||.++|+.-..++|.+++++-..  ...+..+||.+|.+-.    +..+.++..+|....+.||..|+|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence            45667899999999999999999999987543  2278889999998764    33448899999999999999999999


Q ss_pred             HHHHHHcCCHHHHH----HHHHhcc----cCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC----CHHHH
Q 038373          170 IEMYGKCCNTRLAR----KVFDQLR----KRNLSSWHLMISGYAANGQGAD-GLMLFEQMRK----TGPHP----DKETF  232 (475)
Q Consensus       170 i~~~~k~g~~~~A~----~~f~~m~----~~~~~tyn~li~~~~~~g~~~~-A~~l~~~M~~----~g~~p----d~~t~  232 (475)
                      +.+..+.|+++.|+    +++.+|+    +|...+|..+|.-+++.++..+ |..+..+...    +-++|    |..-|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            99999999888765    4566776    5888899999999999998844 5555555554    23443    55678


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhhCC--Cc-CC---HHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHH
Q 038373          233 LVVFAACASAEAVKEGFLYFEIMKNDYG--IV-PG---IEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEAL  303 (475)
Q Consensus       233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~-p~---~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~l  303 (475)
                      .+.++.|.+..+.+.|.+++.-....-+  +. |+   ..-|..+.+..|....++.-.+.++.|   -.-|+..+-.-+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            8999999999999999999988764322  22 22   234678899999999999999999999   234777787888


Q ss_pred             HHHHHHcCCchHHHHHHHH
Q 038373          304 RNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       304 i~~~~~~g~~~~a~~~~~~  322 (475)
                      +.+....|.++..-+++.-
T Consensus       440 lrA~~v~~~~e~ipRiw~D  458 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKD  458 (625)
T ss_pred             HHHHhhcCcchhHHHHHHH
Confidence            8888888888555454443

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.47  E-value=6.8e-14  Score=113.61  Aligned_cols=99  Identities=60%  Similarity=1.014  Sum_probs=83.2

Q ss_pred             EEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHH--------HHhhhhhhHHHHHHhhcccCCCCCchhe
Q 038373          357 SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK--------EKALQYHSERLAIAYGLISTPPRMPLRI  428 (475)
Q Consensus       357 ~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~--------~~~l~~~~~~l~~~~~~~~~~~~~~~~i  428 (475)
                      +.|..++..+...    ++..+|...|+.|+.......++...+        +..+..|+|++|.+||++..      .+
T Consensus         9 h~F~sgd~shp~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~v   78 (116)
T PF14432_consen    9 HSFVSGDRSHPQS----ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RV   78 (116)
T ss_pred             EEEEeCCCcCccH----HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eE
Confidence            5677665444444    788888899999998877766655443        45778899999999998888      78


Q ss_pred             eccc-cccccccchhHHHhhhcCceEEEecCCcccccc
Q 038373          429 IKNL-RICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR  465 (475)
Q Consensus       429 i~~~-~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~  465 (475)
                      ++++ +.|+|||++.|+++++.+|.|++||..+||||+
T Consensus        79 vkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   79 VKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             EecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            8888 999999999999999999999999999999995

>PF13041 PPR_2: PPR repeat family

Probab=99.42  E-value=3.8e-13  Score=92.52  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      ||.++||++|++|++.|++++|.++|++|.+.|+.||..|||+||++|||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78888999999999999999999999999999999999999999988875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.34  E-value=4.4e-10  Score=119.88  Aligned_cols=230  Identities=8%  Similarity=-0.082  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .+..+..+....|++++|++.|++.....|+. ..+..+-..+...|++++|...++...+.. ..+...+..+...|..
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~  156 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL  156 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            34445566677889999999888877655544 456667777888888999988888887753 3456778888888888


Q ss_pred             cCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      .|+.++|...++.+.  .| +...|..+ ..+.+.|++++|..+++++......++...+..+..++...|+.++|...+
T Consensus       157 ~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~  235 (656)
T PRK15174        157 MDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG  235 (656)
T ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            899998888888764  23 23333333 347788888888888888776543345555556667778888888888888


Q ss_pred             HHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          253 EIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIE----AEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       253 ~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~----A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      +.....   .| +...+..+-..|.+.|+.++    |...|++. ...| +...+..+...+...|+.+.|...++...+
T Consensus       236 ~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~  312 (656)
T PRK15174        236 ESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA  312 (656)
T ss_pred             HHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            887732   23 45666777888888888875    67777777 3344 455777777788888888888777777777


Q ss_pred             cCCCCh
Q 038373          326 LDPSKA  331 (475)
Q Consensus       326 ~~~~~~  331 (475)
                      +.|+..
T Consensus       313 l~P~~~  318 (656)
T PRK15174        313 THPDLP  318 (656)
T ss_pred             hCCCCH
Confidence            776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=1.4e-09  Score=115.99  Aligned_cols=230  Identities=13%  Similarity=0.036  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      +...-..|.+.|++++|+..|++.....|+...|..+-.++.+.|++++|.+.+...++.. ..+...+..+-.+|...|
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg  208 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG  208 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence            4455566888999999999999988777998889999999999999999999999988764 345678888888999999


Q ss_pred             CHHHHHHHHHhccc--------------------------------C-CHHHHHHHHH----------------------
Q 038373          178 NTRLARKVFDQLRK--------------------------------R-NLSSWHLMIS----------------------  202 (475)
Q Consensus       178 ~~~~A~~~f~~m~~--------------------------------~-~~~tyn~li~----------------------  202 (475)
                      ++++|..-|.....                                + +..+|..+-.                      
T Consensus       209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (615)
T TIGR00990       209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE  288 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence            99988765432210                                0 0000000000                      


Q ss_pred             ----HH----------HhcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-H
Q 038373          203 ----GY----------AANGQGADGLMLFEQMRKTG-PHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-I  265 (475)
Q Consensus       203 ----~~----------~~~g~~~~A~~l~~~M~~~g-~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~  265 (475)
                          ++          ...+++++|++.|++..+.+ ..|+ ...|+.+-..+...|++++|...++...   ...|+ .
T Consensus       289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~  365 (615)
T TIGR00990       289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVT  365 (615)
T ss_pred             ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcH
Confidence                00          11245677777777776654 2343 3456666666667777777777777766   23444 4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          266 EHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       266 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ..|..+...|...|++++|.+.|++. ...| +...|..+...+...|+++.|...++...++.|+..
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            45666666677777777777777665 2223 455666666667777777777777766666666543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.30  E-value=1.5e-09  Score=115.90  Aligned_cols=231  Identities=10%  Similarity=0.002  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|..+...+.+.|++++|...+++.....|+.......+..+...|++++|..+++.+.+..-.++...+..+...+.
T Consensus       144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~  223 (656)
T PRK15174        144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC  223 (656)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            33444455555555555555555544333222222211111224445555555555555544422223333444455666


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGAD----GLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVK  246 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~----A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~  246 (475)
                      +.|+.++|...|++..+  | +...++.+-..|...|++++    |+..|++..+.  .| +...+..+...+...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Confidence            66666766666666542  2 45566677777777777764    67777777663  34 4457777778888888888


Q ss_pred             HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHHcCCchHHHHHHHHH
Q 038373          247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEA-LRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~-li~~~~~~g~~~~a~~~~~~l  323 (475)
                      +|...++....   ..|+ ...+..+...|.+.|++++|.+.|+++ ...|+...+.. +...+...|+.++|...++..
T Consensus       302 eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        302 KAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888888773   2443 445666778888888888888888877 34566544433 345677888888888887777


Q ss_pred             hccCCCC
Q 038373          324 GDLDPSK  330 (475)
Q Consensus       324 ~~~~~~~  330 (475)
                      .+..|+.
T Consensus       379 l~~~P~~  385 (656)
T PRK15174        379 IQARASH  385 (656)
T ss_pred             HHhChhh
Confidence            6666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.23  E-value=8.4e-09  Score=109.96  Aligned_cols=229  Identities=13%  Similarity=0.080  Sum_probs=183.1

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+...|+.+-..+...|++++|+..|++.....|+ ...|..+...+...|++++|...++...+.. ..+..+|..+..
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~  407 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ  407 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34567888888889999999999999987766676 4468888888899999999999999998764 456788999999


Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~  247 (475)
                      .|...|++++|...|++..+  | +...|..+...|.+.|++++|+..|++....  .| +...|+.+-..+...|++++
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHH
Confidence            99999999999999998763  4 5678888899999999999999999998764  35 46788889999999999999


Q ss_pred             HHHHHHHHhhhCCCcCC--H------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHH
Q 038373          248 GFLYFEIMKNDYGIVPG--I------EHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELED  317 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~--~------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~  317 (475)
                      |...|+....   +.|+  .      ..++.....|...|++++|.+++++. .+.|+ ...+..|...+...|+.++|.
T Consensus       486 A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi  562 (615)
T TIGR00990       486 AIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL  562 (615)
T ss_pred             HHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            9999998772   2232  1      11222333445579999999999885 44454 456888889999999998888


Q ss_pred             HHHHHHhccC
Q 038373          318 RAEELLGDLD  327 (475)
Q Consensus       318 ~~~~~l~~~~  327 (475)
                      +.++...++.
T Consensus       563 ~~~e~A~~l~  572 (615)
T TIGR00990       563 KLFERAAELA  572 (615)
T ss_pred             HHHHHHHHHh
Confidence            8777766553

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.3e-09  Score=103.89  Aligned_cols=175  Identities=14%  Similarity=0.159  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------------------------HcCCHH
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG-----------------------------KCCNTR  180 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~-----------------------------k~g~~~  180 (475)
                      |=|.|++. ...|.+..+.-+|+.|...|+..+..+--.|+..-|                             |.|.+.
T Consensus       118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA  196 (625)
T KOG4422|consen  118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA  196 (625)
T ss_pred             chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence            34555543 334667777777777777776666655555544322                             222222


Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373          181 LARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG  260 (475)
Q Consensus       181 ~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g  260 (475)
                      +   ++-+..-+.-.||.+||.|+|+--..+.|.++++|-.+...+.+..+||.+|.+-+-    ..+.++..+|... .
T Consensus       197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq-k  268 (625)
T KOG4422|consen  197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQ-K  268 (625)
T ss_pred             H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHh-h
Confidence            2   222222234468999999999999999999999999988888999999999987553    3347888999955 9


Q ss_pred             CcCCHHHHHHHHHHHHhcCCHHHHH----HHHHhC---CCCCCHHHHHHHHHHHHHcCCc
Q 038373          261 IVPGIEHYIAIIKVLGSAGHLIEAE----EFVERM---PFEPTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       261 ~~p~~~~y~~li~~~~~~g~~~~A~----~~~~~m---~~~p~~~t~~~li~~~~~~g~~  313 (475)
                      +.||..|+|+++....+.|+++.|.    +++.+|   |++|...+|..+|.-+++.++.
T Consensus       269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp  328 (625)
T KOG4422|consen  269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP  328 (625)
T ss_pred             cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence            9999999999999999999887654    455555   8999999999999888888776

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.14  E-value=2.6e-08  Score=109.53  Aligned_cols=230  Identities=11%  Similarity=0.006  Sum_probs=181.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      +...|..+-.++.. |+.++|+..|.+.....|+......+...+...|++++|...++.+...  .|+...+..+...+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence            56677777777776 8999999988876665687655444455556899999999999987654  45555567777889


Q ss_pred             HHcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373          174 GKCCNTRLARKVFDQLRKRNL---SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~~~~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      .+.|+.++|...|++..+.+.   ..+..+...+.+.|++++|+..|++..+  +.|+...|..+-..+.+.|+.++|..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~  630 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS  630 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999998765332   2233333344456999999999999887  45788899999999999999999999


Q ss_pred             HHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          251 YFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       251 ~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      .++...   ...|+ ...++.+-..+...|+.++|.+.|++. ...| +...+..+-.++...|+.+.|...++...++.
T Consensus       631 ~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        631 DLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999988   34564 566778888999999999999999987 3344 56778888889999999999999999988888


Q ss_pred             CCCh
Q 038373          328 PSKA  331 (475)
Q Consensus       328 ~~~~  331 (475)
                      |+..
T Consensus       708 P~~a  711 (987)
T PRK09782        708 DNQA  711 (987)
T ss_pred             CCCc
Confidence            7664

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.13  E-value=3.7e-08  Score=90.44  Aligned_cols=193  Identities=12%  Similarity=0.056  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...+..+...+.+.|++++|.+.|++.....|+ ...+..+...+...|++++|.+.++...+.. ..+...+..+...|
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            456667777888888888888888876554444 4556667777778888888888888777664 34556677777777


Q ss_pred             HHcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373          174 GKCCNTRLARKVFDQLRKR-----NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~~-----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a  248 (475)
                      ...|++++|.+.|++..+.     ....|..+...|...|++++|...|++..... ..+...+..+...+...|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence            7788888888887776431     23456666667777777777777777766542 12345666666777777777777


Q ss_pred             HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ...+++..+.  ...+...+..+...+...|+.++|..+.+.+
T Consensus       189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777776632  2224455556666667777777777666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12854 PPR_1: PPR repeat

Probab=99.11  E-value=1.2e-10  Score=72.38  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373          157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      .|+.||.+|||+||++|||.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4889999999999999999999999999999985

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.08  E-value=9.7e-08  Score=87.67  Aligned_cols=196  Identities=15%  Similarity=0.059  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGY  204 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~  204 (475)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+   .+...|..+...|
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4567788888999999999999999998764 44577888899999999999999999987753   3566888899999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 038373          205 AANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE  283 (475)
Q Consensus       205 ~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~  283 (475)
                      ...|++++|.+.|++.......| +...+..+...+...|++++|...+....+.  ...+...+..+...+.+.|++++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence            99999999999999998753333 3456777788889999999999999998842  22245678889999999999999


Q ss_pred             HHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          284 AEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       284 A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      |.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+.
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999987 22 345667777778888899998877776666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.05  E-value=1.5e-10  Score=110.84  Aligned_cols=223  Identities=16%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             HHHHcCChHHHHHHHHhcc-cC-CCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373          104 SLCKEGKVREAIEYMGQDA-SA-SAGYDVFSSLLD-SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR  180 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~-~~-~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~  180 (475)
                      .+.+.|++++|++++++.. .. +|+...|-.++. .+-..++.+.|.+.++.+.+.+- -+...+..++.. ...++.+
T Consensus        17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~   94 (280)
T PF13429_consen   17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPE   94 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccc
Confidence            4455566666666664322 22 233333333222 23334556666666666655442 244445555555 4556666


Q ss_pred             HHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373          181 LARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       181 ~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~  257 (475)
                      +|.+++++.-  .++...+..++..+.+.|+++++.+++++..... ...|...|..+...+.+.|+.++|.+.++...+
T Consensus        95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen   95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6665555432  2344455555555666666666666665554321 233444555555555566666666666665552


Q ss_pred             hCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          258 DYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       258 ~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                         ..|+ ....+.++..+...|+.+++.++++..  ....|...|..+..+|...|+.+.|...++......|++.
T Consensus       175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence               2342 444555666666666666555555544  1123334455555556666666555555555555444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.04  E-value=1.8e-08  Score=100.21  Aligned_cols=187  Identities=11%  Similarity=0.098  Sum_probs=143.6

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGAD  212 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~  212 (475)
                      .|-..|.++.|..-|++.++.  .|+ ...||.|-+++-..|++.+|.+.|.....  |+ .-+-|.|-..|...|.+++
T Consensus       295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence            344456677777777666654  333 56788888888888888888888877653  33 3477788888888888888


Q ss_pred             HHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          213 GLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       213 A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      |..+|..-.+  +.|.- ..+|.|-..|-+.|++++|...+++..   .+.|+ ...|+.+=+.|-..|+++.|...+.+
T Consensus       373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r  447 (966)
T KOG4626|consen  373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTR  447 (966)
T ss_pred             HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence            8888887765  55653 478888888899999999999888877   57776 45678888888888999999988887


Q ss_pred             C-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          291 M-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       291 m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      . .+.|. ...++.|-..|...|++.+|...++.-..++|+-
T Consensus       448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            6 55565 3567788889999999999999998888888764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.00  E-value=1.5e-07  Score=102.51  Aligned_cols=346  Identities=10%  Similarity=0.006  Sum_probs=197.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+...+..+...+.+.|++++|.++|++.....|+ ...+..+...+...|++++|...++...+.. ..+.. +..+..
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~  124 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY  124 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence            44556788888888888888888888886654443 4556677777888888888888888887763 34555 777888


Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHH------------------------------
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFE------------------------------  218 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~------------------------------  218 (475)
                      +|.+.|+.++|...|++..+  | +...+..+...+...|+.++|++.++                              
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            88888888888888887764  3 44455566666666666665554444                              


Q ss_pred             ----------------HHHHc-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHhhhCCC-cCCHHHHHHHHHHH
Q 038373          219 ----------------QMRKT-GPHPDKE-TF----LVVFAACASAEAVKEGFLYFEIMKNDYGI-VPGIEHYIAIIKVL  275 (475)
Q Consensus       219 ----------------~M~~~-g~~pd~~-t~----~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~y~~li~~~  275 (475)
                                      .+.+. .-.|+.. .+    ...+.++...|+.++|...|+.+.+. +- .|+.. --.+...|
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~~~~P~~a-~~~la~~y  282 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-GQIIPPWA-QRWVASAY  282 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCCCHHH-HHHHHHHH
Confidence                            33321 1122211 11    11133445667788888888887743 32 23321 12245678


Q ss_pred             HhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCccccccee
Q 038373          276 GSAGHLIEAEEFVERM-PFEPT-----VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNM  349 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (475)
                      ...|+.++|.++|+++ ...|.     ...+..|..++...|+.++|.+.++.+.+..|.....-....    ..+-..+
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----~~p~~~~  358 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----SIPNDDW  358 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----CCCCchH
Confidence            8888888888888776 22222     234555556677778887766666666555443211000000    0000000


Q ss_pred             EEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccc-cHHHHHHhhhhhhHHHHHHhhcccCCCCCchhe
Q 038373          350 LEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI-DEEAKEKALQYHSERLAIAYGLISTPPRMPLRI  428 (475)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i  428 (475)
                      ..   ............|++++|+++++++...  .|+.......+ ......+......+.+..+..+.+.........
T Consensus       359 ~~---a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        359 LQ---GQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            00   0000001123367799999999998754  57764422211 112222222223333444444443322222233


Q ss_pred             eccccccccccchhHHHhhhcCc
Q 038373          429 IKNLRICGDCHNAIKIMSKIVGR  451 (475)
Q Consensus       429 i~~~~~~g~~~~A~~~~~~m~~~  451 (475)
                      ..++-..|+.++|.++++++..+
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh
Confidence            34566778999999999888654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.99  E-value=6.7e-09  Score=103.23  Aligned_cols=328  Identities=12%  Similarity=0.095  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-  172 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-  172 (475)
                      ..+|..+-+.+-..|++++|+.+++.+.+..|+- ..|..+-.++...|+.+.|.+.|.+.++.  .|+.+...+-+.- 
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL  193 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence            4578889999999999999999999998877754 56999999999999999999999988875  4766554444333 


Q ss_pred             HHHcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHH
Q 038373          173 YGKCCNTRLARKVFDQLR--KRN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~--~~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a  248 (475)
                      +-..|++++|...|-+..  +|. .+.|+.|-..+-..|+..+|+.-|++...  +.|+- -.|..|-..|...+.+++|
T Consensus       194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHH
Confidence            334688888888876544  343 35777777777777888888777777654  34442 2455555555544444444


Q ss_pred             HHHHHHHhhh-------------------------------CCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373          249 FLYFEIMKND-------------------------------YGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP  295 (475)
Q Consensus       249 ~~~~~~m~~~-------------------------------~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p  295 (475)
                      ...+......                               ..+.|+ ...|+.|-+++-..|++.+|.+.+++- ...|
T Consensus       272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p  351 (966)
T KOG4626|consen  272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP  351 (966)
T ss_pred             HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence            4444433310                               023333 234555555555555555555555444 2122


Q ss_pred             -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHH
Q 038373          296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKG  374 (475)
Q Consensus       296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  374 (475)
                       -..+.+.|-..|...|+++.|.+.++.-.+..|.-..+                      .+.+....-+.|++.+|+.
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa----------------------~nNLa~i~kqqgnl~~Ai~  409 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA----------------------HNNLASIYKQQGNLDDAIM  409 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh----------------------hhhHHHHHHhcccHHHHHH
Confidence             22344445555555555555555444444433332211                      1112223345677888888


Q ss_pred             HHHHHHHcCcccCCccccccccH-HHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcC
Q 038373          375 LNGQMREAGYVPDTRYVLHDIDE-EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG  450 (475)
Q Consensus       375 l~~~M~~~G~~Pd~~t~~~~l~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~  450 (475)
                      -+++-.  .|.|+-.--...+.. +...+....+......+.-+.++....-.-+-..|...|.+.+|+.-.+.-..
T Consensus       410 ~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  410 CYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK  484 (966)
T ss_pred             HHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence            887654  356663322222221 11122222222222233332333222222455567888999999887776543

>PF12854 PPR_1: PPR repeat

Probab=98.99  E-value=6.2e-10  Score=69.17  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=27.9

Q ss_pred             CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          260 GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       260 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |+.||.+|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            78888888888888888888888888888887

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.98  E-value=3.6e-07  Score=100.61  Aligned_cols=234  Identities=6%  Similarity=-0.094  Sum_probs=178.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .|+......+...+.+.|++++|...|++.....|+...+..+..++.+.|++++|.+.++...+.. ..+...+..+..
T Consensus       506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~  584 (987)
T PRK09782        506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA  584 (987)
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence            3554333333444568999999999999876655666666677778889999999999999998875 333344444444


Q ss_pred             HHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a  248 (475)
                      .+.+.|++++|...|++..  .|+...|..+...+.+.|+.++|+..|++....  .|+ ...++.+-.++...|+.++|
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            5556699999999999876  478889999999999999999999999998874  464 45677777899999999999


Q ss_pred             HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          249 FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV-EVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      ..+++...+   ..| +...+..+-..|.+.|++++|++.|++. ...|+. .+.-..-....+..+++.+.+.++.-..
T Consensus       663 i~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        663 REMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999883   345 4677889999999999999999999998 556654 2222333344556667666777777766


Q ss_pred             cCCCCh
Q 038373          326 LDPSKA  331 (475)
Q Consensus       326 ~~~~~~  331 (475)
                      +.+...
T Consensus       740 ~~~~~~  745 (987)
T PRK09782        740 FSFDSS  745 (987)
T ss_pred             cCccch
Confidence            776665

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.97  E-value=3.7e-09  Score=101.27  Aligned_cols=220  Identities=13%  Similarity=0.076  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      -|-.+-.-.-..+++++|.+.++++...++. ...|..++.. ...+++++|.++....-+..  ++...+..++..|.+
T Consensus        46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~  122 (280)
T PF13429_consen   46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYR  122 (280)
T ss_dssp             ---------------------------------------------------------------------------H-HHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHH
Confidence            3433333445688899999999988775543 4456666666 68899999999988775543  566777889999999


Q ss_pred             cCCHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 038373          176 CCNTRLARKVFDQLR-----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~-----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~  249 (475)
                      .|+.+++.++++...     ..+...|..+...+.+.|+.++|++++++..+.  .|| ....+.++..+...|+.+++.
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~  200 (280)
T PF13429_consen  123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAR  200 (280)
T ss_dssp             TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence            999999999999865     246778999999999999999999999999884  564 667889999999999999999


Q ss_pred             HHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       250 ~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      +++......  ...|...+..+-.+|...|+.++|..+|++. ...| |..+...+.+++...|+.+.|.++...+
T Consensus       201 ~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  201 EALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999988844  2445566789999999999999999999998 3344 6667777788999999998777765544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.95  E-value=2e-07  Score=106.22  Aligned_cols=228  Identities=13%  Similarity=0.030  Sum_probs=113.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--------CCCH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF--------VKDV  163 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--------~p~~  163 (475)
                      .+...+..+-..|.+.|++++|++.|++.....|+ ...+..+...+. .++.++|..+++.+....-        ....
T Consensus       383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            34556677777788888888888888876654444 233333333331 2233333333332211100        0001


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH-------
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETF-------  232 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~-------  232 (475)
                      ..+..+...|...|++++|.+.|++..+  | +...+..+...|.+.|++++|...|++..+.  .|+ ...+       
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l  539 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYL  539 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            1233344444455555555555554432  2 2334444444455555555555555554432  121 1111       


Q ss_pred             -------------------------------------HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373          233 -------------------------------------LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL  275 (475)
Q Consensus       233 -------------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~  275 (475)
                                                           ..+...+...|+.++|..+++.      ...+...+..|-..|
T Consensus       540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~  613 (1157)
T PRK11447        540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWA  613 (1157)
T ss_pred             HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHH
Confidence                                                 1223334445555555554441      112333455666667


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373          276 GSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPS  329 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~  329 (475)
                      .+.|+.++|.+.|++. ...| +...+..+...+...|+.++|.+.++.+.+..|+
T Consensus       614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~  669 (1157)
T PRK11447        614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND  669 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence            7777777777777766 2233 4566666777777777776666666665555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.95  E-value=7.5e-09  Score=106.67  Aligned_cols=254  Identities=15%  Similarity=0.113  Sum_probs=128.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHh--cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      -.|+-+||..+|..||..|+++.|- +|.-  +...+.+...|+.++.+...+++.+.+.           .|-..||+.
T Consensus        21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~   88 (1088)
T KOG4318|consen   21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN   88 (1088)
T ss_pred             CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence            3455566666666666666655555 4432  2223344555555555555555554443           455555666


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR-KTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~-~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      |..+|.+.||+..    |+..++    -.-.++..+..+|....-..++.... .-+.-||..+-   +.-....|-++.
T Consensus        89 Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaq  157 (1088)
T KOG4318|consen   89 LLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQ  157 (1088)
T ss_pred             HHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHH
Confidence            6666666655544    222221    11223334444554444444433322 12334554433   222333455566


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA-GHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      +.+++..|-...-..|-.+    .+.-.... ..+++-..+-....-.|+..+|.+++......|++   +-+..++.+|
T Consensus       158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~---d~Ak~ll~em  230 (1088)
T KOG4318|consen  158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV---DGAKNLLYEM  230 (1088)
T ss_pred             HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch---hhHHHHHHHH
Confidence            6665544431101111111    12211111 12333333333332259999999999999999999   4566666666


Q ss_pred             CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccc
Q 038373          327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI  395 (475)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l  395 (475)
                      ...+....          .           |.|-.-.+..+...-++.+++.|++.|+.||..|+..-+
T Consensus       231 ke~gfpir----------~-----------HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyv  278 (1088)
T KOG4318|consen  231 KEKGFPIR----------A-----------HYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYV  278 (1088)
T ss_pred             HHcCCCcc----------c-----------ccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence            65554221          1           111111122444566788999999999999999976543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.93  E-value=2.9e-07  Score=92.65  Aligned_cols=257  Identities=10%  Similarity=0.023  Sum_probs=180.9

Q ss_pred             cCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN--KLIEMYGKCCNTRLARK  184 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~Li~~~~k~g~~~~A~~  184 (475)
                      .|++++|.+++.......+++.. |.....+..+.|+.+.|.+.+.++.+.  .|+...+-  .....+...|+.++|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            69999999988875543333333 333344447889999999999999875  45554333  44678899999999999


Q ss_pred             HHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          185 VFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       185 ~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      .+++..+  | +...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.
T Consensus       175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~  254 (398)
T PRK10747        175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN  254 (398)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            9998874  3 6678889999999999999999999999988766433       2444445544555566677777777


Q ss_pred             HhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhh
Q 038373          255 MKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIV  333 (475)
Q Consensus       255 m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~  333 (475)
                      +-+  ....+.....++...+.+.|+.++|.+++++. ...||....  ++.+....++.+.+.+..+.+.+-.|++...
T Consensus       255 lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l  330 (398)
T PRK10747        255 QSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLL  330 (398)
T ss_pred             CCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHH
Confidence            653  23446777889999999999999999999887 444555221  3344445688877777777777777766532


Q ss_pred             hccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccc
Q 038373          334 DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHD  394 (475)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~  394 (475)
                      -..                      +.......+++++|.+.|+...+.  .|+..++..+
T Consensus       331 ~l~----------------------lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L  367 (398)
T PRK10747        331 WST----------------------LGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL  367 (398)
T ss_pred             HHH----------------------HHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence            100                      001112256699999999988864  5887765543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.91  E-value=1.2e-06  Score=88.07  Aligned_cols=215  Identities=9%  Similarity=-0.052  Sum_probs=151.2

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT  179 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~  179 (475)
                      ..+..+.|++++|.+.|.++....|+...+.  .....+...|+.+.|.+.++.+.+.. +-+..+...+...|.+.|++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence            3334678888888888877766556654433  22345667788888888888877765 44567777777888888888


Q ss_pred             HHHHHHHHhcccC---------------------------------------------CHHHHHHHHHHHHhcCChHHHH
Q 038373          180 RLARKVFDQLRKR---------------------------------------------NLSSWHLMISGYAANGQGADGL  214 (475)
Q Consensus       180 ~~A~~~f~~m~~~---------------------------------------------~~~tyn~li~~~~~~g~~~~A~  214 (475)
                      ++|.+++..+.+.                                             +......+..++...|+.++|.
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            8888777766531                                             2224445567777888888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038373          215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-P  292 (475)
Q Consensus       215 ~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~  292 (475)
                      +++++..+.  .||..  ..++.+....++.+++.+..+...++   .| |...+.++-..+.+.|++++|.+.|+.. .
T Consensus       284 ~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~  356 (398)
T PRK10747        284 QIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK  356 (398)
T ss_pred             HHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            888887763  44442  11233444568888888888887743   33 4455778888888899999999999888 6


Q ss_pred             CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373          293 FEPTVEVWEALRNFAQIHGDVELEDRAEELLG  324 (475)
Q Consensus       293 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~  324 (475)
                      ..|+..+|..|-..+.+.|+.++|.+.++.-.
T Consensus       357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            67888888888888888899877776666543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.89  E-value=1e-06  Score=100.61  Aligned_cols=222  Identities=14%  Similarity=0.080  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      +..+...+...|++++|++.|++.....|+ ...+..+...+.+.|++++|...++.+.+.. ..+...+..+...+.+.
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~  542 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS  542 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence            445566788899999999999998776675 4456778888999999999999999998753 33455555555667889


Q ss_pred             CCHHHHHHHHHhcccC----CHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373          177 CNTRLARKVFDQLRKR----NLS---------SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE  243 (475)
Q Consensus       177 g~~~~A~~~f~~m~~~----~~~---------tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g  243 (475)
                      |+.++|...++.+...    +..         .+-.+...+...|+.++|.++++.     ...+...+..+-..+.+.|
T Consensus       543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g  617 (1157)
T PRK11447        543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG  617 (1157)
T ss_pred             CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence            9999999999988632    111         233456778899999999999872     2345567778888899999


Q ss_pred             CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHH
Q 038373          244 AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAE  320 (475)
Q Consensus       244 ~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~  320 (475)
                      +.++|...|+...+.   .| +...+..+...|...|+.++|.+.++.. ...|+ ...+..+-..+...|+.++|.+.+
T Consensus       618 ~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  694 (1157)
T PRK11447        618 DYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF  694 (1157)
T ss_pred             CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999998842   45 5678889999999999999999999987 34444 455666777888899998888888


Q ss_pred             HHHhccCC
Q 038373          321 ELLGDLDP  328 (475)
Q Consensus       321 ~~l~~~~~  328 (475)
                      +.+....+
T Consensus       695 ~~al~~~~  702 (1157)
T PRK11447        695 NRLIPQAK  702 (1157)
T ss_pred             HHHhhhCc
Confidence            87766543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.89  E-value=3.9e-07  Score=92.35  Aligned_cols=229  Identities=14%  Similarity=0.080  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccC-----C---CCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHc---CC-CCC-
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASA-----S---AGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTS---AF-VKD-  162 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~-----~---p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~-~p~-  162 (475)
                      +..-|-..|...|++++|..++++..+.     |   |...+ .+.+-..|...+++++|..+|+++..-   .+ .-+ 
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4444888899999999999999864432     2   44433 344556778889999999999998653   12 222 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHhccc----------CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC
Q 038373          163 --VELNNKLIEMYGKCCNTRLARKVFDQLRK----------RNLS-SWHLMISGYAANGQGADGLMLFEQMRK---TGPH  226 (475)
Q Consensus       163 --~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~---~g~~  226 (475)
                        ..+++.|-..|++.|++++|...+++..+          +.+. -++.++..|+..+++++|..+++.-.+   .-+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence              34566666689999999999988876431          2333 567788889999999999999987543   2234


Q ss_pred             CCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhC---CC--cCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 038373          227 PDK----ETFLVVFAACASAEAVKEGFLYFEIMKNDY---GI--VPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-----  291 (475)
Q Consensus       227 pd~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---g~--~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-----  291 (475)
                      ++.    -+|+.|-..|-+.|++++|+++|+......   +.  .+. ...++-|-..|.+.++.++|.++|.+-     
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            443    489999999999999999999999876432   11  222 456778888899999999999999876     


Q ss_pred             ---CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          292 ---PFEPTV-EVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       292 ---~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                         +..||+ .+|..|...|...|+.|.|.+..+.+..
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence               233444 5789999999999999988888776643

>TIGR00540 hemY_coli hemY protein

Probab=98.88  E-value=1.6e-06  Score=87.64  Aligned_cols=220  Identities=10%  Similarity=-0.030  Sum_probs=150.4

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHH
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL-------NNKLIEMY  173 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~Li~~~  173 (475)
                      ...+.+.|++++|++.++.+....| +..++..+...+...|+++++.+++..+.+.++.+....       +..+++.-
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~  239 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA  239 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4556677888888888877766555 444567777778888888888888888888765432222       11112111


Q ss_pred             HHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHH
Q 038373          174 GKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET---FLVVFAACASAEAVKE  247 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---~~~li~~~~~~g~~~~  247 (475)
                      ......+...++.+..++   .+...+-.+...+...|+.++|.+++++..+.  .||...   .....-.....++.+.
T Consensus       240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence            222223444445555543   37778888999999999999999999999875  344432   1222222334577888


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER--M-PFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      +.+.++...+...-.|+.....++-..+.+.|++++|.+.|+.  . ...||...+..+...+.+.|+.++|.+.++.-
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888887774423333224455788889999999999999993  3 56799999999999999999998887777653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=98.88  E-value=1.1e-06  Score=92.41  Aligned_cols=226  Identities=10%  Similarity=-0.018  Sum_probs=157.6

Q ss_pred             CCHHHHHHHHHHHHH-----cCChHHHHHHHHhcccCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHHHHc
Q 038373           93 AQLESLDVNLLSLCK-----EGKVREAIEYMGQDASASAGYD-VFSSLLDSCG---------NLKSIEMGKRVHELLRTS  157 (475)
Q Consensus        93 ~~~~~~n~li~~~~~-----~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~m~~~  157 (475)
                      .+.-.|...+.+...     .+..++|+++|++.....|+.. .|..+-.++.         ..+++++|...+++..+.
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            334445555555321     1235688889988777667654 3444433332         234588999999999887


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 038373          158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFL  233 (475)
Q Consensus       158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~  233 (475)
                      . +-+...+..+-..+...|++++|...|++..  .| +...|..+-..|...|++++|+..+++..+.  .|+.. .+.
T Consensus       334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~  410 (553)
T PRK12370        334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGI  410 (553)
T ss_pred             C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHH
Confidence            5 4577888888888999999999999999876  35 4568888889999999999999999998874  44432 333


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHc
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV-WEALRNFAQIH  310 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~~~li~~~~~~  310 (475)
                      .++..+...|++++|...+++....  ..|+ ...+..+-..|...|+.++|.+.+.++ ...|+..+ ++.|-..|+..
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            4445566789999999999888733  2343 444677778889999999999999988 33455443 44454566766


Q ss_pred             CCchHHHHHHHHHhc
Q 038373          311 GDVELEDRAEELLGD  325 (475)
Q Consensus       311 g~~~~a~~~~~~l~~  325 (475)
                      |+  .+...++.+.+
T Consensus       489 g~--~a~~~l~~ll~  501 (553)
T PRK12370        489 SE--RALPTIREFLE  501 (553)
T ss_pred             HH--HHHHHHHHHHH
Confidence            63  45555554443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.87  E-value=2e-08  Score=103.64  Aligned_cols=193  Identities=14%  Similarity=0.081  Sum_probs=116.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHEL-LRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~Li~  171 (475)
                      -+...|+.++.+..++++.+.+.         .|-..||..|+.+|...||+.. .+..++ |.            .++.
T Consensus        57 v~e~vf~~lv~sh~~And~Enpk---------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~  114 (1088)
T KOG4318|consen   57 VREGVFRGLVASHKEANDAENPK---------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQ  114 (1088)
T ss_pred             ccchhHHHHHhcccccccccCCC---------CCchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHh
Confidence            34567899999999998877664         3888999999999999999876 222222 22            2233


Q ss_pred             HHHHcCCHHHHHHHHHhccc-----CCHH----------HHHHHHHHHHhc------CC-----------hHHHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK-----RNLS----------SWHLMISGYAAN------GQ-----------GADGLMLFEQ  219 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~-----~~~~----------tyn~li~~~~~~------g~-----------~~~A~~l~~~  219 (475)
                      .+...|.-..-..++..+..     ||..          .|..+++-..+.      +-           .....++.. 
T Consensus       115 sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~-  193 (1088)
T KOG4318|consen  115 SFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLN-  193 (1088)
T ss_pred             hhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHH-
Confidence            34444444444444433221     1211          233333332111      10           111122222 


Q ss_pred             HHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC
Q 038373          220 MRKTGP-HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEP  295 (475)
Q Consensus       220 M~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p  295 (475)
                      |.+.+. .||..+|..++++-.-+|+++.|..++.+|+++ |+..+..-|-.|+-+   .+...-++.++..|   |+.|
T Consensus       194 ~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p  269 (1088)
T KOG4318|consen  194 MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP  269 (1088)
T ss_pred             HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence            233223 478888888888888888888888888888855 887777666666654   66666666666666   7788


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 038373          296 TVEVWEALRNFAQIHGD  312 (475)
Q Consensus       296 ~~~t~~~li~~~~~~g~  312 (475)
                      +..|+..-+-.+..+|.
T Consensus       270 ~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  270 GSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             CcchhHHHHHhhhcchh
Confidence            88887766555555443

>TIGR00540 hemY_coli hemY protein

Probab=98.86  E-value=3e-07  Score=92.94  Aligned_cols=274  Identities=14%  Similarity=-0.004  Sum_probs=180.8

Q ss_pred             HHHHHHHH--HHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           98 LDVNLLSL--CKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        98 ~n~li~~~--~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      +..+..++  ...|+++.|.+.+.+.....|+... |-..-.+..+.|+.+.|.+.+....+.--.++..+.-+....+.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            34455553  3689999999999887766676544 33444567788999999999999876531222334455578888


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC---ASAEAVKEG  248 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~---~~~g~~~~a  248 (475)
                      ..|+.+.|...++.+.+  | +...+..+...|.+.|++++|.+++.++.+.++.+.......-..+.   ...+..+++
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999874  4 66688899999999999999999999999987643332211111121   222233333


Q ss_pred             HHHHHHHhhhC--CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHH--HHHHcCCchHHHHHHHH
Q 038373          249 FLYFEIMKNDY--GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE-ALRN--FAQIHGDVELEDRAEEL  322 (475)
Q Consensus       249 ~~~~~~m~~~~--g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~-~li~--~~~~~g~~~~a~~~~~~  322 (475)
                      .+.+..+.+..  ....+...+..+...+...|+.++|.+++++. ...||..... .++.  .....++.+.+.+..+.
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            34555554321  11137788899999999999999999999998 5456654310 1222  22334666666777777


Q ss_pred             HhccCCCCh--hh-hccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccc
Q 038373          323 LGDLDPSKA--IV-DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHD  394 (475)
Q Consensus       323 l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~  394 (475)
                      ..+..|++.  .. +.+                       .....+.|++++|.+.|+.-......||...+.++
T Consensus       325 ~lk~~p~~~~~~ll~sL-----------------------g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       325 QAKNVDDKPKCCINRAL-----------------------GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             HHHhCCCChhHHHHHHH-----------------------HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence            666666665  21 111                       11123367799999999954444456887665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.86  E-value=1.4e-06  Score=95.00  Aligned_cols=237  Identities=12%  Similarity=0.033  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      .+...+..+...+.+.|++++|+..+++.....|+...+..+-.++...|+.++|...++++.+.. +.+...+..+..+
T Consensus        81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~  159 (765)
T PRK10049         81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA  159 (765)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345567778888999999999999999876655544337777778888999999999999998864 3355566667777


Q ss_pred             HHHcCCHHHHHHHHHh----------------------------------------------ccc-----CCHH-----H
Q 038373          173 YGKCCNTRLARKVFDQ----------------------------------------------LRK-----RNLS-----S  196 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~----------------------------------------------m~~-----~~~~-----t  196 (475)
                      +.+.|..++|.+.++.                                              +.+     |+..     .
T Consensus       160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a  239 (765)
T PRK10049        160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA  239 (765)
T ss_pred             HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence            7777776665555542                                              221     1110     1


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHH
Q 038373          197 WHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIK  273 (475)
Q Consensus       197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~  273 (475)
                      +...+..+...|++++|+..|+++.+.+-. |+..-. .+..++...|+.++|..+|+.+.......+  ....+..|..
T Consensus       240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~  318 (765)
T PRK10049        240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY  318 (765)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence            111133456778999999999999887632 443222 246688899999999999998873311111  1344667777


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          274 VLGSAGHLIEAEEFVERM-PFEP-------------T---VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       274 ~~~~~g~~~~A~~~~~~m-~~~p-------------~---~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ++.+.|++++|.++++++ ...|             +   ...+..+...+...|+.++|.+.++.+.+..|...
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~  393 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ  393 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            889999999999999988 2223             2   12344556678888999888888888877777664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=1.9e-07  Score=94.14  Aligned_cols=223  Identities=12%  Similarity=0.026  Sum_probs=143.3

Q ss_pred             HHHHHcCChHHHHHHHHhcccCC-----------------------------------CCHHHHHHHHHHHhccCCHHHH
Q 038373          103 LSLCKEGKVREAIEYMGQDASAS-----------------------------------AGYDVFSSLLDSCGNLKSIEMG  147 (475)
Q Consensus       103 ~~~~~~g~~~~A~~l~~~~~~~~-----------------------------------p~~~t~~~ll~~~~~~~~~~~a  147 (475)
                      .+|-..+++++|.++|+...+..                                   -.+.||-++-++|.-.++-+.|
T Consensus       361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A  440 (638)
T KOG1126|consen  361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA  440 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence            35666778888888886432211                                   2345666666666667777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHHcC
Q 038373          148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHL---MISGYAANGQGADGLMLFEQMRKTG  224 (475)
Q Consensus       148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~---li~~~~~~g~~~~A~~l~~~M~~~g  224 (475)
                      .+.|++..+.. +...++|+-+-+-+.-...+|.|...|..-...|...||+   |--.|.+.++++.|+--|+...+  
T Consensus       441 ik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--  517 (638)
T KOG1126|consen  441 IKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--  517 (638)
T ss_pred             HHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--
Confidence            77777766543 2266777777777777777777777777766666665555   34557777777777777777665  


Q ss_pred             CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-H
Q 038373          225 PHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV-W  300 (475)
Q Consensus       225 ~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~  300 (475)
                      +.| |.+....+...+-+.|+.|+|.+++++..   -+.| |...--.-...+.-.++.++|+..++++ .+.|+..+ |
T Consensus       518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~  594 (638)
T KOG1126|consen  518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVF  594 (638)
T ss_pred             CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence            334 45555566666667777778877777765   2333 2222223344466677778888887777 44555444 4


Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          301 EALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       301 ~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      -.|-..|.+.|+.+.|..-+....+++|.+.
T Consensus       595 ~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  595 ALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            4444577777777777666666777776654

>PRK12370 invasion protein regulator; Provisional

Probab=98.79  E-value=1.9e-06  Score=90.47  Aligned_cols=196  Identities=7%  Similarity=-0.129  Sum_probs=144.4

Q ss_pred             CChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373          109 GKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD  187 (475)
Q Consensus       109 g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~  187 (475)
                      +++++|...+++.....| +...+..+-..+...|++++|...+++..+.. +.+...+..+-..|...|+.++|...|+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            457899999999877666 45567777777888999999999999998875 4457788889999999999999999999


Q ss_pred             hccc--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC
Q 038373          188 QLRK--RNL-SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP  263 (475)
Q Consensus       188 ~m~~--~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p  263 (475)
                      +..+  |+- ..+..+...+...|++++|...+++..... .|+ ...+..+-.++...|+.++|...+..+...   .|
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~  472 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EI  472 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cc
Confidence            8764  432 234445556777899999999999987653 343 445677777888999999999999887632   34


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCc
Q 038373          264 G-IEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       264 ~-~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~g~~  313 (475)
                      + ....+.|-..|+..|  ++|...++.+    ...++..-+..++.  .-.|+-
T Consensus       473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~  523 (553)
T PRK12370        473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEA  523 (553)
T ss_pred             hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhh
Confidence            3 344556666778888  4777766666    33344444444444  445664

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.64  E-value=4.1e-08  Score=61.52  Aligned_cols=35  Identities=29%  Similarity=0.574  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK  229 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~  229 (475)
                      ++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.58  E-value=5.9e-06  Score=89.43  Aligned_cols=332  Identities=13%  Similarity=0.059  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      .|...| -..+.|+++.|++.|++.....|+.  ..+ .++..+...|+.++|..+++...... .......-++...|.
T Consensus        37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~  113 (822)
T PRK14574         37 QYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence            344444 4679999999999999988777775  244 88888889999999999999987211 223344444466888


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      ..|++++|.++|+++.+  | |...+..++..|...|+.++|++.+++....  .|+...|..++..+...++..+|.+.
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            88999999999999974  3 4567778889999999999999999998774  56766775555555456666669999


Q ss_pred             HHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH------HHHHHHH-----HHcCCchHHH
Q 038373          252 FEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERMP--FEPTVEVW------EALRNFA-----QIHGDVELED  317 (475)
Q Consensus       252 ~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~t~------~~li~~~-----~~~g~~~~a~  317 (475)
                      ++++.+.   .| +...+..++..+.+.|-...|.++..+-+  +.+...-|      ..+|..-     ....++..++
T Consensus       192 ~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        192 SSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            9999843   46 46677899999999999999999988763  22222111      0111100     0122344556


Q ss_pred             HHHHHHhccCCC-ChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCc-ccCCccccccc
Q 038373          318 RAEELLGDLDPS-KAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGY-VPDTRYVLHDI  395 (475)
Q Consensus       318 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~-~Pd~~t~~~~l  395 (475)
                      +++..+..+... +..|..        .+...-+.    + ..+......+++.++++.++.|+..|. .|+-+- -.+-
T Consensus       269 ~ala~~~~l~~~~~~~p~~--------~~~~~~~~----~-Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~-~a~a  334 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEA--------QADYQRAR----I-DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR-RWAA  334 (822)
T ss_pred             HHHHHHHHHHhhccCCCcc--------chHHHHHH----H-HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH-HHHH
Confidence            666665553310 000100        00000000    0 000112335679999999999998885 476321 1122


Q ss_pred             cHHHHHHhhhhhhHHHHHHhhcc----cCCCCC--chheeccccccccccchhHHHhhhcC
Q 038373          396 DEEAKEKALQYHSERLAIAYGLI----STPPRM--PLRIIKNLRICGDCHNAIKIMSKIVG  450 (475)
Q Consensus       396 ~~~~~~~~l~~~~~~l~~~~~~~----~~~~~~--~~~ii~~~~~~g~~~~A~~~~~~m~~  450 (475)
                      +++.....-......+...+.--    ..+...  ...+...|...|+.++|..+++++..
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            22222111111111121111100    011111  23578899999999999999999986

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.53  E-value=0.00013  Score=70.02  Aligned_cols=223  Identities=11%  Similarity=0.011  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASA--SAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +..|..-..+--+.|+.+.|-.++.+.-+.  .++...+-+.-......|+.+.|..-...+.+.+ ..+..+......+
T Consensus       118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~  196 (400)
T COG3071         118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRA  196 (400)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence            334444444555556666665555544332  1233333344444445555555555555554444 3344445555555


Q ss_pred             HHHcCCHHHHHHHHHhcccC---------------------------------------------CHHHHHHHHHHHHhc
Q 038373          173 YGKCCNTRLARKVFDQLRKR---------------------------------------------NLSSWHLMISGYAAN  207 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~~---------------------------------------------~~~tyn~li~~~~~~  207 (475)
                      |.+.|++.+...+...|.+.                                             +...-.+++.-+.+.
T Consensus       197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l  276 (400)
T COG3071         197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL  276 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence            55555555555555555321                                             233344556667788


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373          208 GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF  287 (475)
Q Consensus       208 g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~  287 (475)
                      |+.++|.++..+-.+.+..|+-.++    -.+.+.++.+.-.+..+.-.+.++-.|  ..+.+|=..|.+.+.+.+|.+.
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~  350 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEA  350 (400)
T ss_pred             CChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHH
Confidence            8888888888888887777763332    355566777666666666665666666  4578888889999999999999


Q ss_pred             HHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373          288 VERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLG  324 (475)
Q Consensus       288 ~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~  324 (475)
                      |+.- ...|+..+|+-+-+++.+.|+.+.|.++.+.-.
T Consensus       351 leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         351 LEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9977 778999999999999999999988888766544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.51  E-value=5.6e-05  Score=72.88  Aligned_cols=91  Identities=9%  Similarity=-0.130  Sum_probs=47.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN  207 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~  207 (475)
                      |..+-..+...|+.++|...|....+.. ..+...|+.+-..|...|++++|...|+...+  | +..+|..+...|...
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            3334444455555555555555555443 23445555555555555555555555555432  2 234555555555555


Q ss_pred             CChHHHHHHHHHHHH
Q 038373          208 GQGADGLMLFEQMRK  222 (475)
Q Consensus       208 g~~~~A~~l~~~M~~  222 (475)
                      |++++|++.|+.-.+
T Consensus       146 g~~~eA~~~~~~al~  160 (296)
T PRK11189        146 GRYELAQDDLLAFYQ  160 (296)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=1.7e-05  Score=75.80  Aligned_cols=229  Identities=14%  Similarity=0.079  Sum_probs=147.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~Li~~  172 (475)
                      +....--+.+++...|+.+.++.-......  |.......+-..+....+-+.+..-+.+....+.. .+..+.-..-.+
T Consensus        34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~--~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i  111 (290)
T PF04733_consen   34 KLERDFYQYRSYIALGQYDSVLSEIKKSSS--PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI  111 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHS-TTSS--CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhccCCC--hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            344555677788888988876655544332  66665544444444334444444444333333323 233333333346


Q ss_pred             HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCCHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA----SAEAVKEG  248 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~----~~g~~~~a  248 (475)
                      |...|++++|.++++.-  .+.......|..|.+.++++.|.+.++.|.+.  ..|.+ ...|..++.    -...+.+|
T Consensus       112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHH
Confidence            77789999999998775  56667778899999999999999999999874  34544 333444433    23468999


Q ss_pred             HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCc-hHHHHHHHHHhc
Q 038373          249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDV-ELEDRAEELLGD  325 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~-~~a~~~~~~l~~  325 (475)
                      ..+|+++.+  .+.++..+.|.+..++...|++++|.+++.+. ...| |..+...+|......|+. +.+++..+.+..
T Consensus       187 ~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  187 FYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            999999985  45577888999999999999999999999886 3233 455555677766777776 556677777766


Q ss_pred             cCCCCh
Q 038373          326 LDPSKA  331 (475)
Q Consensus       326 ~~~~~~  331 (475)
                      ..|...
T Consensus       265 ~~p~h~  270 (290)
T PF04733_consen  265 SNPNHP  270 (290)
T ss_dssp             HTTTSH
T ss_pred             hCCCCh
Confidence            655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.49  E-value=1.9e-07  Score=58.06  Aligned_cols=34  Identities=24%  Similarity=0.586  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373          194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      +.|||++|.+|++.|+++.|+++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999887

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=4.9e-05  Score=70.86  Aligned_cols=214  Identities=14%  Similarity=0.068  Sum_probs=154.3

Q ss_pred             HcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHH
Q 038373          107 KEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSA-FVK--DVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       107 ~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      -..+.++|.++|-+|....|..+- --+|-+.|-+.|.++.|.++|+-+.++- ..-  -....--|-.=|.+.|-+|.|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            357889999999999884443332 3456677888899999999999988742 111  123344566778999999999


Q ss_pred             HHHHHhcccCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHH
Q 038373          183 RKVFDQLRKRNLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE----TFLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       183 ~~~f~~m~~~~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----t~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      +.+|....+-+..   .--.|+..|-...+|++|+++-.++...|-++..+    -|.-|-.......+++.|..++...
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999998874444   56678999999999999999999998876665443    3444555555677889999988877


Q ss_pred             hhhCCCcCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          256 KNDYGIVPGIE-HYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV--EVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       256 ~~~~g~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      .+   ..|+.+ .--.+=+.+...|+++.|.+.++.. .-.|+.  .+-..|..+|...|+.+.....+...
T Consensus       207 lq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         207 LQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             Hh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            63   234332 2224446788999999999999988 334554  45677888999999986554444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=6.8e-06  Score=83.16  Aligned_cols=192  Identities=13%  Similarity=-0.015  Sum_probs=155.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-  169 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-  169 (475)
                      +-.+.+|.++=++|.-+++.+.|++.|++.....| ..++|+-+-.-+.....+|.|...|+..+    ..|...||+. 
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwY  493 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWY  493 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHH
Confidence            45578999999999999999999999999888666 66778777777788889999999998776    4566667665 


Q ss_pred             --HHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          170 --IEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       170 --i~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                        --.|.|.++++.|+--|....+  | +.+.-..+...+-+.|+.++|+++|++.....-+ |..+---....+...++
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR  572 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc
Confidence              5579999999999999998764  3 6777777888899999999999999998764322 34444444556667899


Q ss_pred             HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          245 VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .++|.+.+++++   .+.|+ ...|-.|...|-+.|+.+.|+.-|.-+
T Consensus       573 ~~eal~~LEeLk---~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  573 YVEALQELEELK---ELVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             hHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            999999999998   46675 567788889999999999999888666

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.42  E-value=0.00013  Score=70.29  Aligned_cols=204  Identities=10%  Similarity=-0.104  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+-..|.+.|+.++|...|++.....|+ ...|+.+-..+...|++++|.+.|+...+.. .-+..++..+..+|
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l  142 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            455777777899999999999999987776664 5679999999999999999999999998764 33567888899999


Q ss_pred             HHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          174 GKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      ...|++++|.+.|+...+  |+-.........+...++.++|.+.|.+.... ..|+...+ .+.  ....|++.++ +.
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~~-~~  217 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISEE-TL  217 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCHH-HH
Confidence            999999999999998653  43221111122234567899999999775543 23333222 222  2235565544 35


Q ss_pred             HHHHhhhCCCcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH
Q 038373          252 FEIMKNDYGIVP-----GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALR  304 (475)
Q Consensus       252 ~~~m~~~~g~~p-----~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li  304 (475)
                      +..+.+.....+     ....|..|-..|.+.|+.++|...|++. ... ||.+-+...+
T Consensus       218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~  277 (296)
T PRK11189        218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL  277 (296)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            555552211111     2356888889999999999999999987 323 4766665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=2.9e-05  Score=72.36  Aligned_cols=226  Identities=14%  Similarity=0.061  Sum_probs=176.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcC
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN-NKLIEMYGKCC  177 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~Li~~~~k~g  177 (475)
                      +-|-.+|.+-|.+.+|.+.|+......|-+.||--|-++|.+..+.+.|..++.+-.+.  .|-.+|| .-+-..+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            56677899999999999999987776788889999999999999999999999988765  4555554 44556777789


Q ss_pred             CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      +.++|.+++++..+   -|+.+-..+-.+|.-.++++-|++.++++.+.|+. +...|+.+--+|.-.+.+|-+.--|..
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            99999999998764   26667777788899999999999999999999986 778888888888889999998888776


Q ss_pred             HhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373          255 MKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP  328 (475)
Q Consensus       255 m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~  328 (475)
                      ...- --.|+  ..+|-.|=......|++.-|.+.|+--  .-.-+...+|.|--.-.+.|+++.|...+..-....|
T Consensus       384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            6532 22233  223555555667789999999999876  3234567888887777889999776665555444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8.5e-06  Score=79.13  Aligned_cols=219  Identities=15%  Similarity=0.128  Sum_probs=160.3

Q ss_pred             HHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCC--CCCHHHH------------
Q 038373          103 LSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSC-GNLKSIEMGKRVHELLRTSAF--VKDVELN------------  166 (475)
Q Consensus       103 ~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~-~~~~~~~~a~~~~~~m~~~g~--~p~~~~~------------  166 (475)
                      .++-+-.+.+++++-.......| |+.--+-+.+.++ -...++++|..+|+++.++.-  --|..+|            
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            34445556666666555554444 4433333444333 345677777777777776621  0133333            


Q ss_pred             -------------------HHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373          167 -------------------NKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTG  224 (475)
Q Consensus       167 -------------------~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g  224 (475)
                                         .++-+-|+-.++.++|...|++..+  | -...|+.|-+-|....+...|++-++...+-.
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence                               3444555666778889999987664  3 45689999999999999999999999987742


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373          225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE  301 (475)
Q Consensus       225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~  301 (475)
                       +.|-..|-.|-.+|.-.+...-|.-.|++..   .++| |...|.+|=+.|.+-+++++|.+.|.+.  .-.-+...+.
T Consensus       395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             -chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence             3477899999999999999999999998876   5667 7899999999999999999999999988  2134558888


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHhc
Q 038373          302 ALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       302 ~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      .|-+.|.+.++.++|...++...+
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999888877776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.37  E-value=0.00012  Score=79.52  Aligned_cols=196  Identities=10%  Similarity=-0.013  Sum_probs=142.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHH
Q 038373          134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---------NLSSWHLMISGY  204 (475)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------~~~tyn~li~~~  204 (475)
                      -|-++...++..++.+.|+.|...|.+.-.++--++.++|...++.++|..+|.+....         ++.....|..+|
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            34466777888888888888888886655667888888888888888888888876421         333457788888


Q ss_pred             HhcCChHHHHHHHHHHHHcC-------------CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHH
Q 038373          205 AANGQGADGLMLFEQMRKTG-------------PHPDKETF-LVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYI  269 (475)
Q Consensus       205 ~~~g~~~~A~~l~~~M~~~g-------------~~pd~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~  269 (475)
                      ...+++++|..+++++.+.-             ..||-..+ ..++..+...|++.+|++.++.+...   .| |.....
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~  454 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRI  454 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence            88888888888888888731             11233333 34556677888888888888888732   34 667778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      .+-+.+...|+..+|++.++.. ...|+ ..+.......+...|+++.|+...+.+.+..|+...
T Consensus       455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        455 ALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            8888888888888888888666 44554 344445556667778888888888777777776653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.35  E-value=4e-07  Score=55.25  Aligned_cols=31  Identities=35%  Similarity=0.662  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~  225 (475)
                      +|||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.34  E-value=0.00026  Score=67.88  Aligned_cols=277  Identities=15%  Similarity=0.068  Sum_probs=197.3

Q ss_pred             HHHHHHHH--cCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373          100 VNLLSLCK--EGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus       100 ~li~~~~~--~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      .+..++.+  .|+|.+|.++..+-...++.+. .|-.-..+--..|+.+.+.+++.+..+.--.++..++-+........
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            34445443  7899999999987655454443 37777777888999999999999998874378888888999999999


Q ss_pred             CCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHH
Q 038373          177 CNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAACASAEAVK  246 (475)
Q Consensus       177 g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~~~~g~~~  246 (475)
                      |+...|..-.++..   -++...-.....+|.+.|++.+.+.++..|.+.|+--|.       .+|+.++.-+...+..+
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~  246 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE  246 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence            99999998887654   457889999999999999999999999999999977664       58899999988888888


Q ss_pred             HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      .-...|+..-.  ..+-+...-.+++.-|.++|+.++|.++..+- +-..|.. .-.+ -.+.+-++.+.-.++.+....
T Consensus       247 gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~-~~~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         247 GLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL-IPRLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             HHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH-HhhcCCCCchHHHHHHHHHHH
Confidence            87778888774  34445556688999999999999999998876 3233443 1122 234455666544555555444


Q ss_pred             cCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHhh
Q 038373          326 LDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKAL  404 (475)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l  404 (475)
                      -.|++...  .                    .+...-..+++.|.+|.+.|+.  .-...|+..+|.-.-+.+.+.+..
T Consensus       323 ~h~~~p~L--~--------------------~tLG~L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~  377 (400)
T COG3071         323 QHPEDPLL--L--------------------STLGRLALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGEP  377 (400)
T ss_pred             hCCCChhH--H--------------------HHHHHHHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCCh
Confidence            33333211  0                    0000111225568899888884  334678888876655555444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.26  E-value=0.00023  Score=72.45  Aligned_cols=200  Identities=16%  Similarity=0.148  Sum_probs=146.0

Q ss_pred             CCCHHHH-HHHHHHHHHcCChHHHHHHHHhccc-----CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 038373           92 NAQLESL-DVNLLSLCKEGKVREAIEYMGQDAS-----ASAGYD----VFSSLLDSCGNLKSIEMGKRVHELLRTS----  157 (475)
Q Consensus        92 ~~~~~~~-n~li~~~~~~g~~~~A~~l~~~~~~-----~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~----  157 (475)
                      .|.+.+. +.+-..|...+++++|..+|+++..     .|++..    +++.|-.+|.+.|++++|...++...+-    
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            4554432 3456678899999999999987543     343333    3666777899999999998888766432    


Q ss_pred             -CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHhccc-------C-C--H-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          158 -AF-VKDVE-LNNKLIEMYGKCCNTRLARKVFDQLRK-------R-N--L-SSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       158 -g~-~p~~~-~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~-~--~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                       |. .|.+. .++.+...|+..+++++|..++..-.+       + +  + -+|+.|-..|-..|++++|.++|++....
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             22 23333 355667778889999999998875431       2 3  1 28999999999999999999999987652


Q ss_pred             -----C-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh---hhCCCc-CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          224 -----G-PHP-DKETFLVVFAACASAEAVKEGFLYFEIMK---NDYGIV-PG-IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       224 -----g-~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~---~~~g~~-p~-~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                           | ..+ ....++-|-.+|.+.+..++|.++|.+-.   ...|.. || ..+|..|...|.+.|++++|.++.+..
T Consensus       397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                 1 122 24577888899999999999999887543   223332 33 568899999999999999999998766

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.22  E-value=0.00078  Score=69.32  Aligned_cols=220  Identities=16%  Similarity=0.180  Sum_probs=154.4

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----C
Q 038373          104 SLCKEGKVREAIEYMGQDASASAGYDVF-SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC-----C  177 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~-----g  177 (475)
                      .+.+.|++++|++.+..-...-+|..++ ...-..+.+.|+.++|..+|..+++.+ +.|..-|..|..+.+-.     .
T Consensus        13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~   91 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE   91 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence            4678899999999998755555777664 555667788999999999999999886 44555556666665332     2


Q ss_pred             CHHHHHHHHHhccc----------------------------------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          178 NTRLARKVFDQLRK----------------------------------RNL-SSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       178 ~~~~A~~~f~~m~~----------------------------------~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      +.+...++|+++.+                                  +++ .+++.|-.-|....+.+-..+++.+...
T Consensus        92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~  171 (517)
T PF12569_consen   92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN  171 (517)
T ss_pred             cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            56777788887642                                  122 2566666666655555555556655543


Q ss_pred             c----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHH
Q 038373          223 T----G----------PHPDK--ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       223 ~----g----------~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~  285 (475)
                      .    |          -.|..  .|+..+-..|...|++++|.++.+...   ...|+ +..|..--..|-+.|++++|.
T Consensus       172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa  248 (517)
T PF12569_consen  172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAA  248 (517)
T ss_pred             hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            2    1          12344  255666777888999999999999887   34565 567777788899999999999


Q ss_pred             HHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          286 EFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       286 ~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      +.++.. .+ .-|-..-+--...+.+.|+++.|++.+.++..-.
T Consensus       249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            988877 22 2466666777788889999988888888876544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=0.00028  Score=68.55  Aligned_cols=186  Identities=12%  Similarity=0.010  Sum_probs=138.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038373          141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLF  217 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~  217 (475)
                      .|++++|.+.|.+.+...-.-....||+=+ .+-+.|++++|+..|-.+.   ..++...--+.+.|-...+...|++++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            378999999999988665333333444332 3566799999999987664   346666666777888888899999987


Q ss_pred             HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373          218 EQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP  295 (475)
Q Consensus       218 ~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p  295 (475)
                      -+.  ..+.| |.....-|-..|-+.|+-..|.+.+..-. + -+..+..|..=|-.-|....-.++|..+|++. -++|
T Consensus       582 ~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsy-r-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  582 MQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-R-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-c-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            554  34555 67788889999999999999999887655 2 34457777777888888888899999999998 5789


Q ss_pred             CHHHHHHHHHHH-HHcCCchHHHHHHHHHhccCCCCh
Q 038373          296 TVEVWEALRNFA-QIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       296 ~~~t~~~li~~~-~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      +.+-|..||..| .+.|+...|.+.+....+-.|.+.
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence            999999999755 568999666655555555445543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00081  Score=60.14  Aligned_cols=196  Identities=15%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN  207 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~  207 (475)
                      ..-|--+|...|+...|..-++..++.. +.+..++..+-..|-+.|..+.|.+-|+.-..  | +-..-|..-.-+|..
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            3344445666666666666666666654 34455666666667777777777776665431  2 333444444456777


Q ss_pred             CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHH
Q 038373          208 GQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       208 g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~  285 (475)
                      |++++|...|++-...---|. ..||..+.-+..+.|+.+.|++.|..-.+   ..|+ ..+.-.+-....+.|+.-.|.
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence            777777777777665422221 24666666566677777777777776652   2332 334556677777777777777


Q ss_pred             HHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          286 EFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       286 ~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      .++++.  ...++..+.-..|..-...|+.+.+.+.-..|....|..
T Consensus       194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            777776  223566665556666666777766666655665555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=5e-05  Score=70.80  Aligned_cols=207  Identities=10%  Similarity=0.029  Sum_probs=165.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038373           88 PLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS-SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN  166 (475)
Q Consensus        88 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  166 (475)
                      .+...|-+-||-.|-.+|.+-.+++.|+.+|.+.....|-.+||- .+-+.+-..++.++|.++|++..+.. .-++...
T Consensus       249 sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai  327 (478)
T KOG1129|consen  249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI  327 (478)
T ss_pred             HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee
Confidence            344577888899999999999999999999999988789889874 44455667789999999999998864 4566666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHc
Q 038373          167 NKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACAS  241 (475)
Q Consensus       167 ~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--t~~~li~~~~~  241 (475)
                      .++-..|.-.++.+-|.+.+.++.+   .+-..|+.+--+|.-.+++|-++--|++....--.|+..  .|-.|-.....
T Consensus       328 Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~  407 (478)
T KOG1129|consen  328 ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT  407 (478)
T ss_pred             eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe
Confidence            6777778888999999999998775   456689999889999999999999999887765556543  45566666678


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV  297 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  297 (475)
                      .|++..|.+.|+..... . .-....+|.|--.-.+.|++++|..+++.. .+.|+.
T Consensus       408 iGD~nlA~rcfrlaL~~-d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  408 IGDFNLAKRCFRLALTS-D-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             ccchHHHHHHHHHHhcc-C-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            89999999999887632 2 224677888888889999999999999876 334543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00037  Score=68.06  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYA  205 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~  205 (475)
                      .|..++-+-|+-.++-++|...|++.++.+ +.....|+-+-+-|....+...|..-++...   .+|-..|-.|-.+|.
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            455566666666677777777777777665 4445666666667777777777777776544   246667777777777


Q ss_pred             hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373          206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA  284 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A  284 (475)
                      -.+...=|+-.|++-..  ++| |...|.+|-.+|.+.+++++|.+.|.... . .-+.+...|..|-+.|-+-++..+|
T Consensus       410 im~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~-~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI-L-LGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH-h-ccccchHHHHHHHHHHHHHHhHHHH
Confidence            77777777777776655  455 56677777777777777777777777766 2 2333456677777777777777777


Q ss_pred             HHHHHhC-------CCCCCHHHHH--HHHHHHHHcCCchHHHH
Q 038373          285 EEFVERM-------PFEPTVEVWE--ALRNFAQIHGDVELEDR  318 (475)
Q Consensus       285 ~~~~~~m-------~~~p~~~t~~--~li~~~~~~g~~~~a~~  318 (475)
                      ...|++-       |..-+.....  -|-..+.+.+++++|..
T Consensus       486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence            7666544       2221211111  13345566677765554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.12  E-value=0.00094  Score=62.53  Aligned_cols=185  Identities=11%  Similarity=0.012  Sum_probs=83.1

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAGY------DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      =+-|-+.|.+|+|+.+-+..... ||.      ...--|-.-|-..|-+|.|..+|..+.+.| +--...---|+..|-+
T Consensus        76 GnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~  153 (389)
T COG2956          76 GNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQA  153 (389)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHH
Confidence            33455566666666655432221 222      122233334555566666666666555433 2223334445555555


Q ss_pred             cCCHHHHHHHHHhcccCCHHH--------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHH
Q 038373          176 CCNTRLARKVFDQLRKRNLSS--------WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV-VFAACASAEAVK  246 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~~~~t--------yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-li~~~~~~g~~~  246 (475)
                      ..++++|..+-++..+-+--+        |.-|-..+....+.+.|..++.+-.+.  .|+.+--++ +-+.....|+++
T Consensus       154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~  231 (389)
T COG2956         154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQ  231 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchH
Confidence            556665555555444322222        222333333344455555555554442  222222222 223334455555


Q ss_pred             HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .|.+.++.+.+. +..--..+-..|..+|...|+.++...++.++
T Consensus       232 ~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         232 KAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            555555555432 22222333445555555555555555554444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.12  E-value=3.5e-06  Score=52.49  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD  162 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~  162 (475)
                      +||++|++|++.|++++|.++|.+|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PLN02789 farnesyltranstransferase

Probab=98.09  E-value=0.002  Score=62.55  Aligned_cols=210  Identities=10%  Similarity=0.017  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      .+++.+-..+...++.++|+.+..+.....|+..| |+.--..+.+.+ +++++...++.+.+.. ..+..+|+-.--.+
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l  116 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence            35666666778888999999999998876677765 554444455556 6899999999998775 44555676554455


Q ss_pred             HHcCC--HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCH
Q 038373          174 GKCCN--TRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA---EAV  245 (475)
Q Consensus       174 ~k~g~--~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~---g~~  245 (475)
                      -+.|+  .+++..+++.+.+   +|..+|+.....+...|++++|++.++++.+.... |...|+.....+.+.   |..
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            56665  3677888877764   47889999999999999999999999999987654 566676665555544   222


Q ss_pred             ----HHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc
Q 038373          246 ----KEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA----GHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIH  310 (475)
Q Consensus       246 ----~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~----g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~  310 (475)
                          ++..++...+.   ...| |...|+-+-..|...    ++..+|.+++.+. ... .+......|++.|+..
T Consensus       196 ~~~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        196 EAMRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence                34556665555   2344 566788777777773    3446688888776 323 3567778888888753

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.08  E-value=6.2e-06  Score=51.10  Aligned_cols=33  Identities=9%  Similarity=0.326  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK  161 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p  161 (475)
                      .||+++|++|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888876

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.98  E-value=0.0052  Score=63.37  Aligned_cols=232  Identities=14%  Similarity=0.108  Sum_probs=157.2

Q ss_pred             CCCHHHHH-HHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHh-cc-----CCHHHHHHHHHHHH---------
Q 038373           92 NAQLESLD-VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCG-NL-----KSIEMGKRVHELLR---------  155 (475)
Q Consensus        92 ~~~~~~~n-~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~-~~-----~~~~~a~~~~~~m~---------  155 (475)
                      -+|..+|- ..-..|.+.|+.++|...+.......|+...|-..+..+. -.     .+.+.-.++++++.         
T Consensus        34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~  113 (517)
T PF12569_consen   34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP  113 (517)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch
Confidence            46666654 4445588999999999999998888898888655544443 11     23555566665553         


Q ss_pred             -------------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc------------------cC
Q 038373          156 -------------------------TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR------------------KR  192 (475)
Q Consensus       156 -------------------------~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~------------------~~  192 (475)
                                               +.|+   +.+++.|-..|....+.+-..+++....                  .|
T Consensus       114 ~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p  190 (517)
T PF12569_consen  114 RRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP  190 (517)
T ss_pred             hHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence                                     3332   1356666666665555555555555542                  12


Q ss_pred             CHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHH
Q 038373          193 NLS--SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI  269 (475)
Q Consensus       193 ~~~--tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~  269 (475)
                      ...  +|.-+-..|-..|++++|++..++-.+.  .|+. -.|.+-...+-+.|++++|.+..+... +.... |...-+
T Consensus       191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~-DRyiNs  266 (517)
T PF12569_consen  191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLA-DRYINS  266 (517)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChh-hHHHHH
Confidence            333  4455677788999999999999998874  6774 477888889999999999999999887 33332 777778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCC---CCC--CH----HHHHH--HHHHHHHcCCchHHHHH----HHHHhccCCCC
Q 038373          270 AIIKVLGSAGHLIEAEEFVERMP---FEP--TV----EVWEA--LRNFAQIHGDVELEDRA----EELLGDLDPSK  330 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m~---~~p--~~----~t~~~--li~~~~~~g~~~~a~~~----~~~l~~~~~~~  330 (475)
                      -.+..+.++|++++|.+++...-   ..|  |.    ..|=-  --.+|.+.|+...|.+-    .+.+.++..+-
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ  342 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ  342 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence            88999999999999999988872   112  11    12322  23578888998776543    33444444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.98  E-value=0.001  Score=61.63  Aligned_cols=181  Identities=14%  Similarity=-0.049  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDV-ELN  166 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~  166 (475)
                      .....+-.+...+.+.|++++|...|++.....|+.    .++..+-.++.+.|++++|...++.+.+..-. +.. .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            455567777778889999999999998766544542    35666777888889999999999998765311 111 234


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373          167 NKLIEMYGKC--------CNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVV  235 (475)
Q Consensus       167 ~~Li~~~~k~--------g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l  235 (475)
                      ..+-.+|.+.        |+.++|.+.|+.+.+  |+ ...+.++.....    ....      ..        .....+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~~  172 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELYV  172 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHHH
Confidence            4444455543        677888888877753  32 222222111000    0000      00        001133


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          236 FAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      -..+.+.|+.++|...+....+.+.-.| ....+..+...|.+.|+.++|..+++.+
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456677777777777777664432223 2456667777777777777777777766

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.97  E-value=0.002  Score=70.76  Aligned_cols=222  Identities=13%  Similarity=0.127  Sum_probs=162.4

Q ss_pred             CCC-HHHHHHHHHHHHHcCChHHHHHHHHhccc-CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 038373           92 NAQ-LESLDVNLLSLCKEGKVREAIEYMGQDAS-ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE  164 (475)
Q Consensus        92 ~~~-~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  164 (475)
                      .|| .+.|-.-|.-..+.+..++|.+++++... ..+-     .-.|.++++.-...|.-+...++|++..+.-  --..
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence            454 35788888888899999999999887543 2111     1235566665555577788889999887753  2356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH-HHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD--KETFL-VVFAA  238 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~-~li~~  238 (475)
                      +|..|...|.+.+..++|-++|+.|-++   ....|...+..+.++.+-++|.+++.+..+.  -|-  .+-+. -.+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence            7899999999999999999999999864   5568999999999999999999999887764  343  33222 22233


Q ss_pred             HHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCc
Q 038373          239 CASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEP--TVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~t~~~li~~~~~~g~~  313 (475)
                      -.+.|+-+++..+|+.....+--+  ...|+.+|++=.+.|+.+.++.+|++.   ++.|  =-..|.--+..=..+|+-
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence            357899999999999888553333  446999999999999999999999988   3322  345677777776777876


Q ss_pred             hHHHHH
Q 038373          314 ELEDRA  319 (475)
Q Consensus       314 ~~a~~~  319 (475)
                      +.++.+
T Consensus      1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred             hhHHHH
Confidence            554443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.95  E-value=0.00015  Score=64.37  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGN-----LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM  200 (475)
Q Consensus       126 p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l  200 (475)
                      .|..+|..+|..+.+     .|.++-....+..|.+-|+..|..+|+.||+.+=| |.+- -..+|+.|       |   
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F---  112 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F---  112 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h---
Confidence            456666666666643     47888888889999999999999999999998876 3322 11122111       1   


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 038373          201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV-KEGFLYFEIMK  256 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~-~~a~~~~~~m~  256 (475)
                       .-|  -.+-+-|++|+++|+..|+.||..|+..|++.+++.+.. .+..++.-.|-
T Consensus       113 -~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  113 -MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             -ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence             112  133567899999999999999999999999999776643 33344444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.94  E-value=0.00049  Score=68.19  Aligned_cols=128  Identities=14%  Similarity=0.142  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                      ...+|+..+...++++.|..+|+++.+.+...+-.|+..|...++-.+|++++++..... .-|......-...|.+.++
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            344556666667999999999999987766666678888888999999999999988642 2366666777777889999


Q ss_pred             HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 038373          245 VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT  296 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~  296 (475)
                      .+.|.++.+++.   ...|+ ..+|..|...|.+.|++++|+..++.++..+.
T Consensus       250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~  299 (395)
T PF09295_consen  250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY  299 (395)
T ss_pred             HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence            999999999998   45675 56999999999999999999999999975543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.00094  Score=63.87  Aligned_cols=190  Identities=12%  Similarity=0.044  Sum_probs=126.1

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS---AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      .|.......+...+...++-+.++.-+++.....   .+.......-..+...|++++|.+++..-      .+......
T Consensus        63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al  136 (290)
T PF04733_consen   63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL  136 (290)
T ss_dssp             SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred             ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence            3555555444333333345556666665533322   23222222223466789999999888642      46777778


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccC--CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRKR--NLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE  243 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~~--~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g  243 (475)
                      .|..|.+.++++.|.+.|+.|++-  |.+   ...+.|+.+.-.+.+.+|.-+|+|+.+. ..++..+.|.+..+....|
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC
Confidence            899999999999999999999854  433   2233333333345689999999998654 6788999999999999999


Q ss_pred             CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 038373          244 AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL-IEAEEFVERM  291 (475)
Q Consensus       244 ~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~-~~A~~~~~~m  291 (475)
                      ++++|.+++.+..++   .| |..+...+|-.....|+- +.+.+++.++
T Consensus       216 ~~~eAe~~L~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  216 HYEEAEELLEEALEK---DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             -HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            999999999887633   33 344555677777777877 7788899998

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.94  E-value=0.001  Score=61.77  Aligned_cols=178  Identities=13%  Similarity=0.065  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-H---HHH
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN-L---SSW  197 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~-~---~ty  197 (475)
                      ....+-.+...+.+.|+++.|...++++.+.. +.+   ..++..+..+|.+.|++++|...|+++.+  |+ .   .+|
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34455556666666777777777777665542 111   13455566666777777777777776642  21 1   133


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH
Q 038373          198 HLMISGYAAN--------GQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY  268 (475)
Q Consensus       198 n~li~~~~~~--------g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y  268 (475)
                      ..+-.++.+.        |+.++|.+.|++....  .|+.. .+..+...    +...      ....         ...
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~------~~~~---------~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLR------NRLA---------GKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHH------HHHH---------HHH
Confidence            3333444433        5566666666666553  23321 11111100    0000      0000         011


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          269 IAIIKVLGSAGHLIEAEEFVERM-PF---EP-TVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~m-~~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      -.+-..|.+.|+.++|...|++. ..   .| ....|..+..++.+.|+.++|...++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            24556789999999999999887 22   23 3568888999999999998887777766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.91  E-value=0.013  Score=61.95  Aligned_cols=198  Identities=16%  Similarity=0.054  Sum_probs=147.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      |.+...-...+-+.-.|+.++|.+++.+..+..| +...|-+|-..|-..|+.+++...+-..--.. +.|...|-.+-+
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~lad  215 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            4444433333333444999999999999877554 55679999999999999999988776554443 557789999999


Q ss_pred             HHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCC
Q 038373          172 MYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL----VVFAACASAEA  244 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~----~li~~~~~~g~  244 (475)
                      ...+.|.++.|.-.|.+..+.   +...+--=+.-|-+.|+..+|.+-|.+|...-..-|..-+-    .++..+-..++
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~  295 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE  295 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999999987643   43333334566888999999999999998753322222222    34555667777


Q ss_pred             HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          245 VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      -+.|.+.++....+.+-..+...++.++..|.+....+.|......+
T Consensus       296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~  342 (895)
T KOG2076|consen  296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD  342 (895)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            78888888877655455556778899999999999999999887776

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.0036  Score=61.02  Aligned_cols=198  Identities=14%  Similarity=0.161  Sum_probs=147.6

Q ss_pred             cCChHHHHHHHHhcccCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAGYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR  183 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~  183 (475)
                      +|++++|.+.+++...  -|...    ||+=|. +-..|++++|...|-.+-.. +.-++.+.--+.+.|--..+...|.
T Consensus       503 ngd~dka~~~ykeal~--ndasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALN--NDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             cCcHHHHHHHHHHHHc--CchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            6889999999998776  33322    444333 45678999999887665321 1345666667778888888889999


Q ss_pred             HHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373          184 KVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG  260 (475)
Q Consensus       184 ~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g  260 (475)
                      +++-+...  | |....+-|-.-|-+.|+-..|++..-+--+. +.-|..|.--|-.-|....-++++..+|+...   =
T Consensus       579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---l  654 (840)
T KOG2003|consen  579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---L  654 (840)
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---h
Confidence            98876653  3 6677888889999999999999876553321 33356666667777777888899999998775   5


Q ss_pred             CcCCHHHHHHHHH-HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCc
Q 038373          261 IVPGIEHYIAIIK-VLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       261 ~~p~~~~y~~li~-~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~  313 (475)
                      +.|+..-|..||. .+.+.|++.+|+++++..  .+.-|+....-|+..+...|..
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            7899999998875 456789999999999998  5666888888888877777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0046  Score=55.43  Aligned_cols=200  Identities=12%  Similarity=0.048  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      .--|--+|.+.|+...|..-+++.....|+. .++..+-..|-+.|..+.|.+-|+...+.. +-+-.+.|..-..+|..
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence            3445558999999999999999988766654 468888889999999999999999998765 44567788888899999


Q ss_pred             CCHHHHHHHHHhcc-cCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          177 CNTRLARKVFDQLR-KRN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       177 g~~~~A~~~f~~m~-~~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      |++++|...|++-. .|+    ..||..+.-+..+.|+.+.|.+.|++-.+..-. ...+...+..-.-+.|++-.|..+
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence            99999999998754 453    348999988899999999999999998874321 345777788888899999999999


Q ss_pred             HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038373          252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE  301 (475)
Q Consensus       252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~  301 (475)
                      ++.....  ..++...--..|..--+.|+.+.|.+.=..+ ..-|...-|.
T Consensus       196 ~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q  244 (250)
T COG3063         196 LERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ  244 (250)
T ss_pred             HHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            9998843  3377777777777778888888777665444 2224444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.86  E-value=0.00093  Score=70.82  Aligned_cols=222  Identities=14%  Similarity=0.044  Sum_probs=96.1

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR  183 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~  183 (475)
                      +-..++.+.|.++|......-|+-++ |--+....-..+.+.+|...+.+..... ..+..+.+-+-+.|.+...+..|.
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~  584 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK  584 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence            33444566666666655444454443 3222211112244555555555554432 233333333444555555555555


Q ss_pred             HHHHhccc-----CCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038373          184 KVFDQLRK-----RNLSSWHLMISGYA------------ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK  246 (475)
Q Consensus       184 ~~f~~m~~-----~~~~tyn~li~~~~------------~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~  246 (475)
                      +-|+.+-+     +|..+--+|-+.|.            ..+..++|+++|.+.++... -|...-|.+--.++..|+++
T Consensus       585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~  663 (1018)
T KOG2002|consen  585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFS  663 (1018)
T ss_pred             cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCch
Confidence            53333321     12222212222111            11234455555555444221 13344444444455555555


Q ss_pred             HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373          247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  322 (475)
                      +|..+|.++.+. .. -+..+|-.|-+.|..+|++..|.++|+.-    .-+-++...+.|-.++-..|.+.+|.++...
T Consensus       664 ~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~  741 (1018)
T KOG2002|consen  664 EARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK  741 (1018)
T ss_pred             HHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            555555555532 11 11223444555555555555555555443    2223444444455555555555444444444


Q ss_pred             HhccCCCC
Q 038373          323 LGDLDPSK  330 (475)
Q Consensus       323 l~~~~~~~  330 (475)
                      -..+.|.+
T Consensus       742 a~~~~p~~  749 (1018)
T KOG2002|consen  742 ARHLAPSN  749 (1018)
T ss_pred             HHHhCCcc
Confidence            44444433

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.84  E-value=1.8e-05  Score=47.78  Aligned_cols=27  Identities=37%  Similarity=0.433  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK  191 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~  191 (475)
                      |||+||++|++.|++++|.++|++|.+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            344444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.82  E-value=0.002  Score=70.75  Aligned_cols=199  Identities=12%  Similarity=0.173  Sum_probs=157.8

Q ss_pred             CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-C-HHH
Q 038373          124 ASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTS-AFV---KDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-N-LSS  196 (475)
Q Consensus       124 ~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~---p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~-~~t  196 (475)
                      ..||.. .|-.-|.-..+.++++.|+++.++.+.. ++.   --..+|.++++.-.--|.-+...++|++..+- | ...
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence            346654 4777777788999999999999998764 222   12457888888888888999999999998763 4 357


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHHHH
Q 038373          197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAIIK  273 (475)
Q Consensus       197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~li~  273 (475)
                      |..|..-|.+.+.+++|-++|++|.+. +.-....|...+..+.+..+-+.|..++.+..   .+.|-   +......+.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL---~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL---KSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH---hhcchhhhHHHHHHHHH
Confidence            999999999999999999999999875 33466789999999999999999999998877   23444   334566677


Q ss_pred             HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          274 VLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       274 ~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      .-.++|+-+.+..+|+..  ....-...|+..|+.-.++|+.+.+...++....+
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            788999999999999988  22235668999999999999997777777766554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.81  E-value=0.015  Score=59.59  Aligned_cols=234  Identities=18%  Similarity=0.167  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|-+-+.-..++..+++|..+|.+.....|+...|..-++.---.++.++|.+++++.++. +.--...|--+-..|-
T Consensus       618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE  696 (913)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence            345555666666666777777777666555566666555444444556677777777666554 1222334444445555


Q ss_pred             HcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLR--KRN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~--~~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      +.++++.|+..|..=.  .|+ +..|-.|..-=-+.|++-+|..+|+.-...+. -|..-|...|..=.+.|..+.|..+
T Consensus       697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~l  775 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELL  775 (913)
T ss_pred             HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHH
Confidence            5666666666655432  243 34676666666677788888888877766543 2677788888888888888888776


Q ss_pred             HHHHhhhC----------------------------CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373          252 FEIMKNDY----------------------------GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE  301 (475)
Q Consensus       252 ~~~m~~~~----------------------------g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~  301 (475)
                      .....+++                            .+.-|..+.-++-..|-...++++|.+.|.+. ...| +..+|.
T Consensus       776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa  855 (913)
T KOG0495|consen  776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA  855 (913)
T ss_pred             HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence            65555331                            12333444445555666667889999999987 3344 467899


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          302 ALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       302 ~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      -+...+.++|.-+.-.+++..+..-+|..
T Consensus       856 ~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  856 WFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            99999999998776677777776665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.79  E-value=0.0066  Score=59.97  Aligned_cols=195  Identities=12%  Similarity=-0.002  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAGYDVFSS-LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK--  168 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--  168 (475)
                      ...|..+-..+...|+.+++..-+.....   ..++...... ....+...|++++|.++++...+.. +.|...++.  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            44566666677778888887666654222   1234322221 1223456799999999999988763 344444442  


Q ss_pred             -HHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          169 -LIEMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       169 -Li~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                       +....-..|..+.+.+.++....  |+ ...+..+...+...|++++|.+.+++..+.. ..+...+..+-..+...|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence             22222234666677777665322  22 3344555667889999999999999998853 2245677888888999999


Q ss_pred             HHHHHHHHHHHhhhCCCcCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          245 VKEGFLYFEIMKNDYGIVPGI--EHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +++|..+++.........|+.  ..|..+...+...|+.++|.+++++.
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999877422222333  34567888899999999999999997

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.77  E-value=0.0089  Score=59.07  Aligned_cols=220  Identities=12%  Similarity=-0.000  Sum_probs=135.9

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCCHH-HHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 038373          104 SLCKEGKVREAIEYMGQDASASAGYD-VFSS---LLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCN  178 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~~~-t~~~---ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~  178 (475)
                      .+...|++++|.+++++.....|+.. .+..   ........+..+.+.+.+..  .....|+ ......+...+...|+
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence            46788999999999988665456544 3332   11111223555555555544  2222343 3445566678899999


Q ss_pred             HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHHHHHH
Q 038373          179 TRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP-HPDK--ETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       179 ~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~--~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      +++|...+++..+   .+...+..+-..|...|++++|...+++.....- .|+.  ..|..+...+...|+.++|..++
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999998764   3567888999999999999999999998876432 2333  34557788889999999999999


Q ss_pred             HHHhhhCCCcCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-C-CCCCHHHHH--HHHHHHHHcCCchHHHHHHHH
Q 038373          253 EIMKNDYGIVPGIEHY-I--AIIKVLGSAGHLIEAEEF---VERM-P-FEPTVEVWE--ALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       253 ~~m~~~~g~~p~~~~y-~--~li~~~~~~g~~~~A~~~---~~~m-~-~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~  322 (475)
                      +.........+..... +  .++.-+-..|..+.+.++   ...- + .......++  ....++...|+.+.|.+.++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~  289 (355)
T cd05804         210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA  289 (355)
T ss_pred             HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            9976321212222211 2  334445555544444433   2211 1 111122233  344566778888766666655


Q ss_pred             Hhc
Q 038373          323 LGD  325 (475)
Q Consensus       323 l~~  325 (475)
                      +..
T Consensus       290 l~~  292 (355)
T cd05804         290 LKG  292 (355)
T ss_pred             HHH
Confidence            543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.023  Score=55.17  Aligned_cols=230  Identities=11%  Similarity=0.033  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHcC---------
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSA---------  158 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~m~~~g---------  158 (475)
                      +-|+--...+-+.+...|+.++|...|++.....|+.++    |..|+.   +.|+.+....+...+....         
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            344555677777788888888888888775553354443    444443   3333333333322221110         


Q ss_pred             ---------------------CCCCHHHHHHH---HHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChH
Q 038373          159 ---------------------FVKDVELNNKL---IEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGA  211 (475)
Q Consensus       159 ---------------------~~p~~~~~~~L---i~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~  211 (475)
                                           +..|....-++   -+.+...|+.++|.--|....  .| +..+|--|+.+|...|++.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence                                 01111111111   123444566666666665433  33 6667777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038373          212 DGLMLFEQMRKTGPHPDKETFLVVF-AACA-SAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFV  288 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~~t~~~li-~~~~-~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~  288 (475)
                      ||.-+-++-.+. +.-+..|.+.+- ..|. ....-++|..+++.-.   .+.|+ ...-+.+-..+...|+.+++..++
T Consensus       386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            766555443221 112223332220 1121 1222355666665443   34555 233456667777788888888888


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373          289 ERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP  328 (475)
Q Consensus       289 ~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~  328 (475)
                      ++- ...||....+.|-+.+.......++..-+..-..++|
T Consensus       462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence            776 5567888888887777766666444444443333433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.73  E-value=0.00047  Score=54.58  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCCh
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAF-VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQG  210 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~  210 (475)
                      ...|..|...+++.....+|+.+++.|+ .|++.+||.++.+.++..-              |-         ..-.++.
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l--------------D~---------~~ie~kl   85 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL--------------DS---------EDIENKL   85 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc--------------cc---------hhHHHHH
Confidence            4456667777999999999999999999 8999999999998876321              11         1123345


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          211 ADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      -+.+.+++.|...+++|+..||+.++..+.+
T Consensus        86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            6788999999999999999999999998764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.72  E-value=0.00031  Score=62.45  Aligned_cols=98  Identities=13%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             HHHHHhc--ccCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 038373          183 RKVFDQL--RKRNLSSWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA-------------  242 (475)
Q Consensus       183 ~~~f~~m--~~~~~~tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~-------------  242 (475)
                      ...|+..  ..+|-.+|..+|..|.+.     |..+-....++.|.+-|+.-|..+|+.||+.+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3455554  456777777777777654     66677777788888888888888888888876542             


Q ss_pred             ---CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCH
Q 038373          243 ---EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL  281 (475)
Q Consensus       243 ---g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~  281 (475)
                         ..-+-|.+++++|+ ++|+-||..|+..|++.+++.+..
T Consensus       114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence               23456888999998 569999999999999999888763

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.72  E-value=0.02  Score=60.69  Aligned_cols=238  Identities=16%  Similarity=0.156  Sum_probs=153.8

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ..+...|-+|-..|-+.|+.++++..+-...... -|..-|..+-.-..+.|++++|.-.|.+.++.. .++...+--=+
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers  248 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS  248 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence            4566788889899999999999988764322222 344556777777777777888877777777664 34444444445


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C------------------------------------------CHHHHHHHHHHHHh
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R------------------------------------------NLSSWHLMISGYAA  206 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~------------------------------------------~~~tyn~li~~~~~  206 (475)
                      ..|-+.|+...|..-|.++-+  |                                          +...+|+++.-|.+
T Consensus       249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~  328 (895)
T KOG2076|consen  249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK  328 (895)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            566666666666666555431  1                                          12256677777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHH----------------------HHH----HHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373          207 NGQGADGLMLFEQMRKTGPHPDKET----------------------FLV----VFAACASAEAVKEGFLYFEIMKNDYG  260 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~~g~~pd~~t----------------------~~~----li~~~~~~g~~~~a~~~~~~m~~~~g  260 (475)
                      ..+++.|.....++.....++|..-                      |..    +.-++.+....+...-+......+ .
T Consensus       329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n  407 (895)
T KOG2076|consen  329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-N  407 (895)
T ss_pred             hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-c
Confidence            7777888777777766222222221                      111    122233333333333333333322 4


Q ss_pred             CcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          261 IVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       261 ~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      +.|  +...|.-+.++|.+.|++.+|.++|..+   +.-.+...|--+-..|...|..+.|.+.+++...+.|+..
T Consensus       408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~  483 (895)
T KOG2076|consen  408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL  483 (895)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence            333  5667888889999999999999999988   2223566788888888888999999999998888888764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0068  Score=60.92  Aligned_cols=231  Identities=10%  Similarity=0.032  Sum_probs=149.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      -.-..-+-..+++.+.+++++.... .++....+..=|.++...|+-.+-..+=..|++.- +....+|-++---|.-.|
T Consensus       248 ~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~  326 (611)
T KOG1173|consen  248 AEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG  326 (611)
T ss_pred             HHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence            3444556678889999998887554 33555556666777778887766666655665542 445677888877777779


Q ss_pred             CHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCChHHHH----------------------------------HHHHHH
Q 038373          178 NTRLARKVFDQLRKRN---LSSWHLMISGYAANGQGADGL----------------------------------MLFEQM  220 (475)
Q Consensus       178 ~~~~A~~~f~~m~~~~---~~tyn~li~~~~~~g~~~~A~----------------------------------~l~~~M  220 (475)
                      +.++|++.|..-..-|   -..|-..-..|+-.|..|.|+                                  +.|.+-
T Consensus       327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999987654322   124555555555555544444                                  444333


Q ss_pred             HHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC-CC---c-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 038373          221 RKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY-GI---V-PGIEHYIAIIKVLGSAGHLIEAEEFVERM--P  292 (475)
Q Consensus       221 ~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~---~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~  292 (475)
                      .  ++-| |...++-+--..-+.+.+.+|..+|....... .+   . -...+++.|=..|.|.++.++|...|++-  -
T Consensus       407 ~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l  484 (611)
T KOG1173|consen  407 L--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL  484 (611)
T ss_pred             H--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            2  2444 44445444444445677778887776554110 01   1 13445778888899999999999999877  3


Q ss_pred             CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          293 FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       293 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      ...|..++.++--.|...|+++.|.+.+..-..+.|++..
T Consensus       485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            3457788888877888889998777777776667777643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0026  Score=62.81  Aligned_cols=208  Identities=11%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             HHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038373          106 CKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARK  184 (475)
Q Consensus       106 ~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~  184 (475)
                      .-.|+.-.|.+.|+......|.... |--+-..|....+-++..+.|+...+.. +-|..+|.---.++.-.+++++|..
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence            3455555555555554443322222 4444445555566666666666655543 2233333333333344455666666


Q ss_pred             HHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC
Q 038373          185 VFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGI  261 (475)
Q Consensus       185 ~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~  261 (475)
                      =|++-..  | ++..|--+--+.-+.+++++++..|++-++. +.--...||..-..+...++++.|.+.|+..+   .+
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~L  491 (606)
T KOG0547|consen  416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---EL  491 (606)
T ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hh
Confidence            6655442  2 3444444444444555666666666665543 22233455555556666666666666665544   12


Q ss_pred             cCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHH
Q 038373          262 VPG---------IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRA  319 (475)
Q Consensus       262 ~p~---------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~  319 (475)
                      .|+         ..+--+++-.-. .+++..|.+++++. .+.| ....|-+|-..-.+.|++++|.+.
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel  559 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL  559 (606)
T ss_pred             ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            222         111122222222 25666666666555 2222 234455555555555655443333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.69  E-value=0.00076  Score=69.41  Aligned_cols=214  Identities=14%  Similarity=0.038  Sum_probs=160.8

Q ss_pred             HHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373          101 NLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR  180 (475)
Q Consensus       101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~  180 (475)
                      +...+...|-...|+.+|++.       ..+.-+|.+|+..|+-.+|..+..+-.+.  +||...|..|.+..-.---++
T Consensus       404 laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE  474 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE  474 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence            444577788888898888764       34667788999999999999998888773  799999999999888777799


Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373          181 LARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY  259 (475)
Q Consensus       181 ~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~  259 (475)
                      +|.++++....+--..|+.++   .++++++++.+.|+.-.+ ..+  -.-||-.+=-+.-+.+++..|.+.|..-.   
T Consensus       475 kawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcv---  546 (777)
T KOG1128|consen  475 KAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCV---  546 (777)
T ss_pred             HHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHh---
Confidence            999999877655333444443   237899999998876444 222  23456555555667889999999988877   


Q ss_pred             CCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          260 GIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       260 g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ...|| ...||.|-.+|.+.|+-.+|...+.+- .+ .-+-..|-.-+....+.|.+++|.+|+..+.+|.....
T Consensus       547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            45675 678999999999999999999999887 22 22334455555566789999999999988888765543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.67  E-value=0.00057  Score=68.08  Aligned_cols=118  Identities=12%  Similarity=0.015  Sum_probs=74.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNL-----SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~-----~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                      .-+......+++......+++++..++-..+. |+.     .|.+++|..|.+.|..++++++++.=...|+-||..|||
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            34555555666666666666666666655542 211     144577777777777777777777777777777777777


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA  278 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~  278 (475)
                      .||+.+.+.|++..|.++..+|..+ +...+..|+.--+.++.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence            7777777777777777776666643 4444555555555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.65  E-value=0.0021  Score=54.76  Aligned_cols=88  Identities=7%  Similarity=-0.175  Sum_probs=45.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCCh
Q 038373          134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQG  210 (475)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~  210 (475)
                      +-.++...|++++|...|....... ..+..+|..+-.++.+.|++++|...|+...+  | +...|..+-.++.+.|+.
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence            3344445555555555555555443 23445555555555555555555555554442  2 344555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 038373          211 ADGLMLFEQMRK  222 (475)
Q Consensus       211 ~~A~~l~~~M~~  222 (475)
                      ++|+..|++-.+
T Consensus       109 ~eAi~~~~~Al~  120 (144)
T PRK15359        109 GLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.64  E-value=0.014  Score=53.40  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=108.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG  208 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g  208 (475)
                      ..+=+++--.|+-+....+...... ....|....++++....+.|++.+|...|.+...   +|..+||.+--+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence            3334445555666655555554322 2245666777788888888888888888887764   47788888888888888


Q ss_pred             ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373          209 QGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF  287 (475)
Q Consensus       209 ~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~  287 (475)
                      ++++|..-|.+..+  +.| +...+|.|.-.+.-.|+.+.|+.++.....  .-.-|...-..|.-..+..|++++|+++
T Consensus       149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            88888888887776  334 345667777777778888888888887763  2233555566777778888888888888


Q ss_pred             HHhC
Q 038373          288 VERM  291 (475)
Q Consensus       288 ~~~m  291 (475)
                      ...-
T Consensus       225 ~~~e  228 (257)
T COG5010         225 AVQE  228 (257)
T ss_pred             cccc
Confidence            7654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.61  E-value=0.00077  Score=53.37  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHhhhCCCcCCHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGP-HPDKETFLVVFAACASAE--------AVKEGFLYFEIMKNDYGIVPGIE  266 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~~g~~p~~~  266 (475)
                      |-...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-+...++..|.. .+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence            555677778888999999999999999999 999999999999987643        23455677888884 48999999


Q ss_pred             HHHHHHHHHHh
Q 038373          267 HYIAIIKVLGS  277 (475)
Q Consensus       267 ~y~~li~~~~~  277 (475)
                      ||+.+|..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99998887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.60  E-value=0.008  Score=54.91  Aligned_cols=155  Identities=12%  Similarity=-0.038  Sum_probs=124.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      .-+-..+-..|+-+.++.+..+..... -|....+..++...+.|++..|...+.+..... .+|..+||.+--+|-+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            334556777888888888877644322 455556778999999999999999999998765 789999999999999999


Q ss_pred             CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      ++++|..-|.+..+   .+-..+|.|--.|.-.|+.+.|..++..-...+.. |...-..+.-.....|++++|+.+-..
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999987653   46678888888899999999999999998887644 455555666678899999999987654


Q ss_pred             H
Q 038373          255 M  255 (475)
Q Consensus       255 m  255 (475)
                      -
T Consensus       228 e  228 (257)
T COG5010         228 E  228 (257)
T ss_pred             c
Confidence            3

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0067  Score=59.94  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      |--+-..|.+..+.++....|+......| |+.+|..=-....-.+++++|..=|+..++.. +-+++.|--+--+..|.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence            55555668888888888888887655442 33445443344444567778877777776654 34566666666677778


Q ss_pred             CCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHH--HHHHHHHccCCHH
Q 038373          177 CNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKT-----GPHPDKETFL--VVFAACASAEAVK  246 (475)
Q Consensus       177 g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g~~pd~~t~~--~li~~~~~~g~~~  246 (475)
                      +++++++..|++.+++   -...||-.-..+...+++++|.+.|+.-.+-     ++-.+..++.  .++- +--.+++.
T Consensus       442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~  520 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDIN  520 (606)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHH
Confidence            8888888888887753   3457888888888888888888888876552     1222222221  1111 11337788


Q ss_pred             HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +|.++++...   .+.|- ...|-+|-..-...|++++|.++|++-
T Consensus       521 ~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  521 QAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888888776   34442 356778888888888888888888875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.58  E-value=0.0031  Score=53.70  Aligned_cols=89  Identities=8%  Similarity=-0.071  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh
Q 038373          199 LMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS  277 (475)
Q Consensus       199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~  277 (475)
                      .+...+...|++++|...|+...... ..+...|..+-.++...|++++|...|+....   ..| +...+..+-..|.+
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHH
Confidence            34444455555555555555554421 11344445555555555555555555555541   222 34444455555555


Q ss_pred             cCCHHHHHHHHHhC
Q 038373          278 AGHLIEAEEFVERM  291 (475)
Q Consensus       278 ~g~~~~A~~~~~~m  291 (475)
                      .|+.++|.+.|++.
T Consensus       105 ~g~~~eAi~~~~~A  118 (144)
T PRK15359        105 MGEPGLAREAFQTA  118 (144)
T ss_pred             cCCHHHHHHHHHHH
Confidence            55555555555554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.56  E-value=0.002  Score=63.91  Aligned_cols=124  Identities=12%  Similarity=0.074  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISG  203 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~  203 (475)
                      +..--.+|++.+...++++.|..+++++.+..  |++  ...|...|...++-.+|.+++++..+   .|....+.-..-
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33445677778888899999999999998774  654  34577888888888899999887764   255566666677


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      |.+.++.+.|+++.+++.+  +.|+.. +|..|..+|.+.|+++.|...++.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            8899999999999999987  567665 99999999999999999999998775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.53  E-value=0.02  Score=51.63  Aligned_cols=114  Identities=9%  Similarity=0.012  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHH-HhcCC--hHHHH
Q 038373          141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGY-AANGQ--GADGL  214 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~-~~~g~--~~~A~  214 (475)
                      .++.+++...++...+.. ..|...|..|-..|...|++++|...|++..+  | |...|..+-.++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            344444444444444443 44555566666666666666666666655442  2 444555555542 44454  35666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       215 ~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      +++++..+.... +...+..+-..+.+.|++++|...|+.+.
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666665553221 33455555555556666666666666655

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.53  E-value=0.0027  Score=65.30  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             HcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038373          107 KEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVF  186 (475)
Q Consensus       107 ~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f  186 (475)
                      .+..|.+|+.+++.......-.--|.-+-.-|+..|+++.|.++|.+.   |      .++--|++|.++|++++|.++-
T Consensus       744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHH
Confidence            344455555555544332111222677777888889999998888753   2      3667788999999999999988


Q ss_pred             HhcccC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373          187 DQLRKR--NLSSWHLMISGYAANGQGADGLMLFE  218 (475)
Q Consensus       187 ~~m~~~--~~~tyn~li~~~~~~g~~~~A~~l~~  218 (475)
                      ++...|  .++.|-+-..-+-++|++.+|.+++-
T Consensus       815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence            877655  34456665555666777776666653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.50  E-value=0.0032  Score=56.71  Aligned_cols=123  Identities=11%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             cCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--HHHHH
Q 038373          108 EGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCN--TRLAR  183 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~--~~~A~  183 (475)
                      .++.+++...+++..... .|...|..+-..+...|+++.|...++...+.. ..+..++..+-.+ |...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            344566666666554444 456668888889999999999999999998876 4578888888886 467787  59999


Q ss_pred             HHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373          184 KVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       184 ~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      ++|++..+  | +..++..+-..+.+.|++++|+..|+++.+.. .|+.--+
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence            99998874  3 67899999999999999999999999998753 4444444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.49  E-value=0.0037  Score=52.30  Aligned_cols=90  Identities=9%  Similarity=-0.023  Sum_probs=44.2

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG  208 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g  208 (475)
                      ..+...+...|+.++|.+.++.....+ ..+...+..+-..|.+.|++++|..+|++..+   .+...|..+-..|...|
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence            333344445555555555555554433 23444555555555555555555555554421   23344444445555555


Q ss_pred             ChHHHHHHHHHHHH
Q 038373          209 QGADGLMLFEQMRK  222 (475)
Q Consensus       209 ~~~~A~~l~~~M~~  222 (475)
                      ++++|+..|++..+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.013  Score=58.93  Aligned_cols=207  Identities=14%  Similarity=0.023  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTS--AF-VKDVELNNKLI  170 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~~~~~Li  170 (475)
                      .++|-++---|--.|+..+|.+.|.+.....|.- -.|-..-..++-.+.-++|...+...-+.  |. .|..  |..  
T Consensus       312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Ylg--  387 (611)
T KOG1173|consen  312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--YLG--  387 (611)
T ss_pred             CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--HHH--
Confidence            3455555555555566666666665533211111 13444555566666666666666555442  32 2322  222  


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHHc
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPH----PDKETFLVVFAACAS  241 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~----pd~~t~~~li~~~~~  241 (475)
                      --|.+.++++.|.+.|.+...  | |....|-+--.....+.+.+|...|+.-+..  .+.    -..-|++.|-.+|.+
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence            236667788888888876542  3 6667777666666778899999999887621  111    144578999999999


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFA  307 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~  307 (475)
                      .+.+++|...|+....  -..-|..+|+++--.|...|+++.|.+.|.+- .+.||..+-..|+.-+
T Consensus       468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            9999999999998873  23337788888888899999999999999988 8889988888887643

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.42  E-value=0.0016  Score=64.92  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHH
Q 038373          193 NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA  270 (475)
Q Consensus       193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~  270 (475)
                      +.+....+++.+....+.+++..++.+....  ...--..|..++|+.|-+.|..+++..+++.=. .+|+-||..+||.
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~  143 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNL  143 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHH
Confidence            5567778888888888899999999888765  332334566799999999999999999998877 6899999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 038373          271 IIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIH  310 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~  310 (475)
                      ||+.+.+.|++..|.+++..|   +.-.+..|+.--+.+|.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999988   3334556666666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.41  E-value=0.02  Score=61.35  Aligned_cols=139  Identities=11%  Similarity=0.045  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS  202 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~  202 (475)
                      +...+-.|-....+.|..++|..+++...+.  .|| ......+...+.+.+++++|...+++...  | +....+.+-.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            3555666666666667777777777776654  343 44455556667777777777777766653  3 3445566666


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHH
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAI  271 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~l  271 (475)
                      ++.+.|++++|.++|++....  .|| ..++..+-.++-..|+.++|...|+...+  ...|...-|+-+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~  228 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR  228 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence            677777777777777777662  233 55666666667777777777777776663  344444444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.41  E-value=0.048  Score=54.21  Aligned_cols=189  Identities=10%  Similarity=0.054  Sum_probs=128.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      +.||...+...+.+.-....-..+-.++.+....+-...-|..-+..| ..|.++.|+..+..+.+.- +-|++......
T Consensus       270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~  347 (484)
T COG4783         270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAG  347 (484)
T ss_pred             CCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            346666777777665444433333333322222122233466555543 5688899999999987653 44566666667


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      +.+.+.++..+|.+.|+.+..  |+ ...+-.+-.+|.+.|++.+|+.++++-.... +-|...|..|-.+|...|+..+
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHH
Confidence            889999999999999998873  54 4566677788999999999999998877653 4478899999999999998887


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE  301 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~  301 (475)
                      +..-..+                   +|.-.|++++|..++...  ..+++..+|.
T Consensus       427 a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a  463 (484)
T COG4783         427 ALLARAE-------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWA  463 (484)
T ss_pred             HHHHHHH-------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence            7654443                   355678888888877665  2334555553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.41  E-value=0.12  Score=53.11  Aligned_cols=180  Identities=13%  Similarity=0.128  Sum_probs=95.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373          141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFE  218 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~  218 (475)
                      .|++..|..++.+..+.. .-+...+-+-+..-.....++.|+.+|.+...  +....|.--++----.|+.++|+++++
T Consensus       597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            344555555544444432 12334444444444445555555555544332  233333333333333444555555554


Q ss_pred             HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 038373          219 QMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM--PFE  294 (475)
Q Consensus       219 ~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~  294 (475)
                      +-.+  .-||-. .|..+-..+-+.++++.|.+.|..=.   ...|+ ...|-.|...=-+.|.+-+|..+|++-  .-.
T Consensus       676 e~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  676 EALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            4433  233332 33333334444445555544443322   12343 455677777777888888999998887  334


Q ss_pred             CCHHHHHHHHHHHHHcCCchHHHHHHH-HHhcc
Q 038373          295 PTVEVWEALRNFAQIHGDVELEDRAEE-LLGDL  326 (475)
Q Consensus       295 p~~~t~~~li~~~~~~g~~~~a~~~~~-~l~~~  326 (475)
                      .|...|-..|..-.+.|+.+.|+.... .|++.
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec  783 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQEC  783 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            578889999999999999987766543 33443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.40  E-value=0.031  Score=55.48  Aligned_cols=116  Identities=17%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCC
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHPDKETFL-VVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGH  280 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~  280 (475)
                      .+...|++++|+..++++...  .||..-|. .....+.+.++.++|.+.++.+.   ...|+ ....-.+-++|.+.|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence            456789999999999998764  56666554 55677889999999999999998   45676 4555677789999999


Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          281 LIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       281 ~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      ..+|..++++.  ...-|...|..|-.+|...|+..++..+....
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999988  44568899999999999999998877776554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.34  E-value=0.008  Score=51.17  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLRK--RNL----SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFA  237 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~----~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~  237 (475)
                      |..++..+ ..++...+...++.+.+  |+.    ..+=.+-..+...|++++|...|++.......|+.  .....|..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444444 25556666555555543  221    11222334566666666666666666665422221  23334455


Q ss_pred             HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      .+...|++++|...++..... .+.  ...+..+=+.|.+.|+.++|...|+.
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~-~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDE-AFK--ALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCc-chH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            556666666666666554311 222  23344555666666666666666653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.073  Score=57.05  Aligned_cols=233  Identities=13%  Similarity=0.059  Sum_probs=153.4

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS----AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VEL  165 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~  165 (475)
                      .-|++..|.|-+-|.-.|++..++++...+....    .-...|--+-+++-..|++++|...|.+..+..  +|  +..
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~  344 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP  344 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence            4566677888888899999999999887655422    122347777888999999999999998877653  44  344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG----QGADGLMLFEQMRKTGPHPDKETFLVVFAA  238 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g----~~~~A~~l~~~M~~~g~~pd~~t~~~li~~  238 (475)
                      +-.|..+|.+.|+++.|...|+..-+  | +..|--+|-.-|+..+    ..++|..++.+-.+.- .-|...|..+-..
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql  423 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL  423 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence            55678899999999999999998863  4 4456666666666665    3466666666555432 2255566666555


Q ss_pred             HHccCCHHHHHHHHH----HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCCH-----H--HHH
Q 038373          239 CASAEAVKEGFLYFE----IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-----EPTV-----E--VWE  301 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~----~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~-----~--t~~  301 (475)
                      +-.. +...+..++.    .+... +-.+-...-|.+-..+...|.+++|.+.|+.. +.     .+|.     +  -||
T Consensus       424 ~e~~-d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  424 LEQT-DPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHhc-ChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            5443 3333354443    33323 44466677888888899999999999988776 21     2333     1  233


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          302 ALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       302 ~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                       |-...-..++.+.|++.+..+....|.-
T Consensus       502 -larl~E~l~~~~~A~e~Yk~Ilkehp~Y  529 (1018)
T KOG2002|consen  502 -LARLLEELHDTEVAEEMYKSILKEHPGY  529 (1018)
T ss_pred             -HHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence             2233344567777777777666555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.12  Score=47.52  Aligned_cols=174  Identities=15%  Similarity=0.046  Sum_probs=116.4

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373          148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      .++.+++...-...+...-..-...|++.|++++|++..+....-.+..-|  +..+.+..+++-|.+.+++|.+-   -
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d  167 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D  167 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c
Confidence            345555555444455444444455789999999999998884433444443  34466777889999999999763   2


Q ss_pred             CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373          228 DKETFLVVFAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE  301 (475)
Q Consensus       228 d~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~  301 (475)
                      +..|.+-|..++.+    .+.+.+|.-+|++|.+  ...|+.-+-|-....+...|++++|+.++++.  .-..|..+..
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            55677766666543    4668899999999984  46677778888888888999999999999887  3334566666


Q ss_pred             HHHHHHHHcCCch-HHHHHHHHHhccCC
Q 038373          302 ALRNFAQIHGDVE-LEDRAEELLGDLDP  328 (475)
Q Consensus       302 ~li~~~~~~g~~~-~a~~~~~~l~~~~~  328 (475)
                      .+|-.....|.-. .-.+-...+....|
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p  273 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHP  273 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence            6665555566542 22334444444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.31  E-value=0.012  Score=50.07  Aligned_cols=122  Identities=14%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HH---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DV---FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV--ELNNKLI  170 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~Li  170 (475)
                      .|..++..+ ..++...+...++.+....|+. ..   .-.+-..+...|++++|...|+......-.++.  ...-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344445444 3555555555555544433333 11   112223445556666666666666555422211  1222344


Q ss_pred             HHHHHcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRKR--NLSSWHLMISGYAANGQGADGLMLFEQ  219 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~~--~~~tyn~li~~~~~~g~~~~A~~l~~~  219 (475)
                      ..+...|++++|...++....+  ....+...-..|.+.|+.++|...|++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4555556666666666554332  122334444455556666666555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.31  E-value=0.0099  Score=49.64  Aligned_cols=93  Identities=10%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      ......+...|.+.|+.++|.+.|+...+  | +...|..+-..|.+.|++++|...|++....+ ..+..++..+-..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            34455556666667777777777766542  2 45566666666767777777777776655543 22445555555666


Q ss_pred             HccCCHHHHHHHHHHHh
Q 038373          240 ASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~  256 (475)
                      ...|+.++|...|+...
T Consensus        96 ~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        96 LALGEPESALKALDLAI  112 (135)
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            66677777777666665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.30  E-value=0.0047  Score=63.81  Aligned_cols=186  Identities=15%  Similarity=0.103  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      +..|.-+|-+|+..|+..+|..+..+..+..||..-|..+.+......-+++|.++.+..-..       .--.+-.-..
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~  496 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL  496 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence            345788899999999999999998887776699999999999888777788888888766432       1111111122


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~  250 (475)
                      +.++++++.+.|+.--+  | -.-+|=.+-.+..+.++++.|.+.|..-..  ..||. ..||++-.+|.+.++-.+|..
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            36888888888875332  2 345777777777888888888888877665  56765 478999999999999999998


Q ss_pred             HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       251 ~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .+.+.. +++.. +...|-..+-...+.|.+++|.+.+.++
T Consensus       575 ~l~EAl-Kcn~~-~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  575 KLKEAL-KCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHh-hcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            888887 55633 3445666666778889999988888877

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.26  E-value=0.0028  Score=60.46  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV  274 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~  274 (475)
                      +|-.+|...-+.+..++|..+|.+..+.+ +..+.....++|.-+ ..++.+.|..+|+...+.  +.-+...|...|+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            45555555555555566666665555322 233333333333322 234455566666665533  22344445666666


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373          275 LGSAGHLIEAEEFVERM-PFEPTV----EVWEALRNFAQIHGDVELEDRAEELLGDLDPS  329 (475)
Q Consensus       275 ~~~~g~~~~A~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~  329 (475)
                      +.+.|+.+.|..+|++. ..-|..    ..|...|..=.+.|+++.+.++.+.+.++.++
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            66666666666666665 212222    36666666666666666665665555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.25  E-value=0.018  Score=61.68  Aligned_cols=141  Identities=9%  Similarity=0.001  Sum_probs=115.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      ++..+-.|-....+.|..++|+.+++......||... ...+...+.+.+++++|....++..+.. .-+....+.+-.+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~  163 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS  163 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence            3666777777888999999999999998877787765 6777888999999999999999998875 4456677778888


Q ss_pred             HHHcCCHHHHHHHHHhcccC--C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRKR--N-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF  236 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~~--~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li  236 (475)
                      +.+.|+.++|..+|++...+  | ..+|..+-.++-..|+.++|...|++-.+. ..|....|+..+
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~  229 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL  229 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence            99999999999999998754  3 568889999999999999999999998763 233445555444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.21  E-value=0.0043  Score=47.00  Aligned_cols=87  Identities=17%  Similarity=0.059  Sum_probs=38.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 038373          100 VNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN  178 (475)
Q Consensus       100 ~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~  178 (475)
                      .+...+.+.|++++|...|++.....|+. ..+..+...+...+++++|.+.+....+.. ..+..++..+...+...|+
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence            34444555555555555555544333322 333444444444455555555555444432 2222334444444444444


Q ss_pred             HHHHHHHHH
Q 038373          179 TRLARKVFD  187 (475)
Q Consensus       179 ~~~A~~~f~  187 (475)
                      .++|...|+
T Consensus        84 ~~~a~~~~~   92 (100)
T cd00189          84 YEEALEAYE   92 (100)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.19  E-value=0.0095  Score=56.86  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHH---H-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMIS---G-YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA  238 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~---~-~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~  238 (475)
                      +.+|..+++..-|.+.++.|+.+|.+..+.+-.+|...+.   - |...++.+.|..+|+...+. +.-+..-|..-|+-
T Consensus         1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            3588999999999999999999999988654444433332   1 33356677799999998875 45567778888899


Q ss_pred             HHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          239 CASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +.+.++.+.|..+|+.......-.. -...|...|+-=.+.|+++.+.++.+++
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999985422222 2358999999999999999999999888

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.17  E-value=0.034  Score=57.59  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      |..+.+-|+..|+++.|.++|-+...       |+-.|..|.+.|+++.|.++-.+.  .|-+.....|-+-..-+-+.|
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehg  838 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHG  838 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhc
Confidence            56677789999999999999987643       667789999999999999886554  454556677777777788899


Q ss_pred             CHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373          178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       178 ~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      ++.+|+++|-.+.+|+.     -|..|-+.|..++.+++..+-     .||.  .|-.-+-.-+-..|++..|++-|-+.
T Consensus       839 kf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  839 KFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             chhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            99999999998888884     467899999999999988763     3332  35555666777789999998877654


Q ss_pred             hhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          256 KNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       256 ~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      -          -|.+-+++|-..+.+++|.++-+.-
T Consensus       909 ~----------d~kaavnmyk~s~lw~dayriakte  934 (1636)
T KOG3616|consen  909 G----------DFKAAVNMYKASELWEDAYRIAKTE  934 (1636)
T ss_pred             h----------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence            4          2677889999999999999887665

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.16  E-value=0.054  Score=59.06  Aligned_cols=209  Identities=10%  Similarity=0.055  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH---HHHHHHHHhccCCHHHHHHH------------------H
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV---FSSLLDSCGNLKSIEMGKRV------------------H  151 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t---~~~ll~~~~~~~~~~~a~~~------------------~  151 (475)
                      .+...|-.||..|-..+++++|.++.++.....|+...   |..+  .+.+.++.+.+..+                  +
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence            56678999999999999999999998865554455543   2222  33444444444333                  3


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038373          152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD  228 (475)
Q Consensus       152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd  228 (475)
                      ..|.+.+  -+-..+-.|..+|-+.|+.++|..+++++.+   .|...-|-+-..|+.. +.++|.+++.+....-+  |
T Consensus       107 ~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~  181 (906)
T PRK14720        107 DKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K  181 (906)
T ss_pred             HHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence            3333322  2224666777888888999999999988874   3677888888888888 88888888887655311  1


Q ss_pred             HHHHHHHHHH---H--HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373          229 KETFLVVFAA---C--ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE  301 (475)
Q Consensus       229 ~~t~~~li~~---~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~  301 (475)
                      ..-|+.+..-   +  +...+++.-.++.+.+....|+.--+.++-.|.+-|-+..+++++.++|+.. ...| |.-...
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~  261 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE  261 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence            1122222211   1  1223344444444444443344444556667777788888888888888887 3333 455556


Q ss_pred             HHHHHHH
Q 038373          302 ALRNFAQ  308 (475)
Q Consensus       302 ~li~~~~  308 (475)
                      -|+..|.
T Consensus       262 ~l~~~y~  268 (906)
T PRK14720        262 ELIRFYK  268 (906)
T ss_pred             HHHHHHH
Confidence            6666665

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.027  Score=51.68  Aligned_cols=115  Identities=10%  Similarity=0.085  Sum_probs=68.3

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHh----cCChH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN-LSSWHLMISGYAA----NGQGA  211 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~-~~tyn~li~~~~~----~g~~~  211 (475)
                      .|++.+++++|.+.....      -+....-.=+..+.|..+++-|.+.++.|.+-| -.|-+-|-.++.+    .+.+.
T Consensus       117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence            466677777777665541      112222222344555666777777777776542 2344433333332    34567


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373          212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND  258 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  258 (475)
                      +|+-+|+||-++ ..|+..+.|....++-..|++++|..++++...+
T Consensus       191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            777777777543 5677777777777777777777777777776644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.15  E-value=0.1  Score=58.59  Aligned_cols=229  Identities=9%  Similarity=-0.041  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhccc----CC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AG--YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV--K-  161 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--p-  161 (475)
                      ..++.+-..+...|++++|...+.+...    .+ +.  ..++..+-..+...|+++.|.+.+++....    |..  + 
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            3456666667889999999999876442    12 21  223455555677889999999998876542    321  1 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK------R--NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETF  232 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~------~--~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~  232 (475)
                      ....+..+-..+...|++++|...+++...      +  ....+..+...+...|+.++|.+.+.+.....-. .....+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            234455566677778999999998887532      1  1335555667788899999999999887542111 111111


Q ss_pred             -----HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-
Q 038373          233 -----LVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT-  296 (475)
Q Consensus       233 -----~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-  296 (475)
                           ...+..+...|+.+.|...+...... .....   ...+..+...+...|+.++|..++++.       +..++ 
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~  730 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL  730 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence                 11224445588999999988776521 11111   111345667788999999999988876       32222 


Q ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          297 VEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       297 ~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      ..+...+-.++...|+.+.|...+....+
T Consensus       731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        731 NRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            23444555678889999777666555444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.12  E-value=0.0084  Score=45.31  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373          198 HLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS  277 (475)
Q Consensus       198 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~  277 (475)
                      ..+...+...|++++|+.+|++..+.. ..+...+..+...+...+++++|.+.++..... . ..+...+..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-D-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcchhHHHHHHHHHHH
Confidence            334444445555555555555544321 112234444444444555555555555544421 1 1122344444455555


Q ss_pred             cCCHHHHHHHHHh
Q 038373          278 AGHLIEAEEFVER  290 (475)
Q Consensus       278 ~g~~~~A~~~~~~  290 (475)
                      .|+.++|.+.|.+
T Consensus        81 ~~~~~~a~~~~~~   93 (100)
T cd00189          81 LGKYEEALEAYEK   93 (100)
T ss_pred             HHhHHHHHHHHHH
Confidence            5555555555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.34  Score=48.20  Aligned_cols=234  Identities=12%  Similarity=0.083  Sum_probs=135.4

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .||...|++.|+.=.+...++.|..+++.-+-..|+..+|---.+.=-+.|++..+..+|....+.  --|...--.|..
T Consensus       171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfv  248 (677)
T KOG1915|consen  171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFV  248 (677)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence            566677777776666666677777776665444466666655555555666666666666655442  111222222222


Q ss_pred             HHH----HcCCHHHHHHHHHh----ccc------------------------------------------C-CHHHHHHH
Q 038373          172 MYG----KCCNTRLARKVFDQ----LRK------------------------------------------R-NLSSWHLM  200 (475)
Q Consensus       172 ~~~----k~g~~~~A~~~f~~----m~~------------------------------------------~-~~~tyn~l  200 (475)
                      +++    ++..++.|.-+|.-    +++                                          | |--+|--.
T Consensus       249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy  328 (677)
T KOG1915|consen  249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY  328 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence            332    33444444444432    110                                          0 12245555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHhhhCCCcC-CHHHHH
Q 038373          201 ISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAAC---ASAEAVKEGFLYFEIMKNDYGIVP-GIEHYI  269 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~---~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~  269 (475)
                      +.---..|+.+...++|+..... +.|-.       ..|.-+=-+|   ....+++.+.++++... +  +-| ...||.
T Consensus       329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l-~--lIPHkkFtFa  404 (677)
T KOG1915|consen  329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL-D--LIPHKKFTFA  404 (677)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-h--hcCcccchHH
Confidence            55555567777777777766543 44411       1221111111   24566777777777666 2  333 455665


Q ss_pred             HHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          270 AIIKVLG----SAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       270 ~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .+--+|+    ++-++..|.+++... |.-|-..+|..-|..=.+.+++|.....++.+.+..|.+.
T Consensus       405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c  471 (677)
T KOG1915|consen  405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC  471 (677)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence            5544443    567788888888766 7778888888888777778888888888888888777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.12  Score=54.44  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             ccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 038373          241 SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       241 ~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~  313 (475)
                      ..|+++.|..+|...+ +         |-+++...|-.|++++|-++-++-|   |....-.|-.-|-..|++
T Consensus       924 S~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v  983 (1416)
T KOG3617|consen  924 SVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDV  983 (1416)
T ss_pred             cccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHH
Confidence            3455555555444443 1         3344455555555555555555543   333333344444444544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.092  Score=53.23  Aligned_cols=205  Identities=15%  Similarity=0.084  Sum_probs=127.0

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR  183 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~  183 (475)
                      +.+.|.+.+|.-.|+..+...|.. ..|--|-...+..++-..|...+.+..+.. .-|..+.-+|--.|...|.=.+|.
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence            567888999998898876655643 457667667777777777888887777764 445666677777777777777777


Q ss_pred             HHHHhcc--c--------------------------------------------CCHHHHHHHHHHHHhcCChHHHHHHH
Q 038373          184 KVFDQLR--K--------------------------------------------RNLSSWHLMISGYAANGQGADGLMLF  217 (475)
Q Consensus       184 ~~f~~m~--~--------------------------------------------~~~~tyn~li~~~~~~g~~~~A~~l~  217 (475)
                      +.|+.-.  .                                            .|...++.|---|--.|++++|...|
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            7776431  0                                            12224444545555666777777777


Q ss_pred             HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 038373          218 EQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM----  291 (475)
Q Consensus       218 ~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m----  291 (475)
                      +..+.  ++| |..+||-|-..++...+-++|...|.+..   .+.|+ +.....|--.|...|.++||.+.|-..    
T Consensus       454 ~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  454 EAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            76665  445 44567777777777777777777777665   35554 222222333466677777766655332    


Q ss_pred             --------CCCCCHHHHHHHHHHHHHcCCchH
Q 038373          292 --------PFEPTVEVWEALRNFAQIHGDVEL  315 (475)
Q Consensus       292 --------~~~p~~~t~~~li~~~~~~g~~~~  315 (475)
                              ...++...|.+|=.++.-.++.|.
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence                    011234566666555555555543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.026  Score=53.66  Aligned_cols=194  Identities=14%  Similarity=0.045  Sum_probs=110.7

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 038373          104 SLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC-----GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN  178 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~-----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~  178 (475)
                      -|.+.+++.+|..+.++.....|-.+..-.+..+-     +....+.-|.+.|...-+++.+-|..-           | 
T Consensus       294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp-----------G-  361 (557)
T KOG3785|consen  294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP-----------G-  361 (557)
T ss_pred             eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc-----------c-
Confidence            45666666666666666544334333333332221     111234445555555444444333221           1 


Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373          179 TRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND  258 (475)
Q Consensus       179 ~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  258 (475)
                                        --+|.+.+.-..++++.+-.++..+.-=..-|.+.|| +..+.+..|.+.+|+++|-.+.. 
T Consensus       362 ------------------RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~-  421 (557)
T KOG3785|consen  362 ------------------RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG-  421 (557)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-
Confidence                              2233333444444555555555444432223333443 55677888888888888877652 


Q ss_pred             CCCcCCHHHHHH-HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          259 YGIVPGIEHYIA-IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALR-NFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       259 ~g~~p~~~~y~~-li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      ..+ -|..+|.+ |...|.++++.+-|.+++-++.-..+..+.--+| +-|-+.+.+--|.+|+..++.++|..
T Consensus       422 ~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  422 PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            122 35667754 4578889999999999988885444555544455 46777888877888888888777654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.17  Score=50.25  Aligned_cols=208  Identities=14%  Similarity=0.119  Sum_probs=147.6

Q ss_pred             HcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 038373          107 KEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV-ELNNKLIEMYGKCCNTRLARK  184 (475)
Q Consensus       107 ~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~Li~~~~k~g~~~~A~~  184 (475)
                      ..+++..|..+|+...... -+...|-.-+.+=.+...+..|..+++..+..  -|-+ ..+--.+.+=-..|++..|++
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence            3556677888888766522 23233555555667788899999999988764  3332 234445555566799999999


Q ss_pred             HHHh-cc-cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          185 VFDQ-LR-KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       185 ~f~~-m~-~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      +|+. |. +||.-.|++.|+-=.+-..++.|..+++...-  +.|++.+|.-...-=-+.|.+..+..+|....+..|-.
T Consensus       163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d  240 (677)
T KOG1915|consen  163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD  240 (677)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence            9985 44 79999999999999999999999999999876  56999999888888889999999999998877543321


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 038373          263 P-GIEHYIAIIKVLGSAGHLIEAEEFVER----MPFEPTVEVWEALRNFAQIHGDVELEDR  318 (475)
Q Consensus       263 p-~~~~y~~li~~~~~~g~~~~A~~~~~~----m~~~p~~~t~~~li~~~~~~g~~~~a~~  318 (475)
                      - +...+++...-=.++..++.|.-+|+-    ++.......|..+...=.+.|+.+..+.
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd  301 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED  301 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence            1 223344444444566778888877653    3433346677777776667777644333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.87  E-value=0.07  Score=53.66  Aligned_cols=126  Identities=13%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh-ccc-CCHHHH-HHHHHHHH
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK-DVELNNKLIEMYGKCCNTRLARKVFDQ-LRK-RNLSSW-HLMISGYA  205 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~-m~~-~~~~ty-n~li~~~~  205 (475)
                      +|...++..-+..-++.|+.+|.+..+.+..+ ++++++++|.-||. ++.+-|.++|+- |++ +|.-.| +..+.-+.
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~  446 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLS  446 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            35555555555555666666666666555555 55666666665553 455556666652 222 233222 23334444


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          206 ANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ..++-..|..||+.....++.||.  ..|..+|.-=+.-|++..+.++-+++.
T Consensus       447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            455555555566555555444443  355555555555555555555555444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.86  E-value=0.39  Score=49.56  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHHc----------CCCC
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLS-------SWHLMISGYAANGQGADGLMLFEQMRKT----------GPHP  227 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~-------tyn~li~~~~~~g~~~~A~~l~~~M~~~----------g~~p  227 (475)
                      .|..+-+.|-..|+++.|+.+|++-.+-+-.       +|-.--..=.++.+++.|+++.+....-          |-.|
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            4556777788889999999999887653222       4444444445667778888877664321          1111


Q ss_pred             -------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCC
Q 038373          228 -------DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV-PGIEHYIAIIKVLGSAGHLIEAEEFVERM-P-F-EPT  296 (475)
Q Consensus       228 -------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~  296 (475)
                             ....|...++---..|-++....+++.+. +..+. |-.+.--++  -+-...-++++.+++++= . + -|+
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii-dLriaTPqii~NyAm--fLEeh~yfeesFk~YErgI~LFk~p~  545 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII-DLRIATPQIIINYAM--FLEEHKYFEESFKAYERGISLFKWPN  545 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHH--HHHhhHHHHHHHHHHHcCCccCCCcc
Confidence                   11233444444445567777777777777 33332 222111111  133444566677766653 1 1 133


Q ss_pred             H-HHHHHHHH
Q 038373          297 V-EVWEALRN  305 (475)
Q Consensus       297 ~-~t~~~li~  305 (475)
                      + ..||+-+.
T Consensus       546 v~diW~tYLt  555 (835)
T KOG2047|consen  546 VYDIWNTYLT  555 (835)
T ss_pred             HHHHHHHHHH
Confidence            3 35666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.85  E-value=0.34  Score=54.43  Aligned_cols=222  Identities=9%  Similarity=-0.023  Sum_probs=139.7

Q ss_pred             HHHHcCChHHHHHHHHhcccCC--CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASAS--AGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDVELNNKLIEM  172 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~--p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~Li~~  172 (475)
                      .+...|++++|...+++.....  .+.    ...+.+-..+...|++++|...+.+....    |- .....+++.+-..
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            4568999999999988754311  222    23455555667889999999999887643    21 1123455666677


Q ss_pred             HHHcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK-------R----NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPHPD--KETFLVVFA  237 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~-------~----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd--~~t~~~li~  237 (475)
                      +...|++++|...+++...       +    ....+..+...+...|++++|...+++....  ...+.  ..++..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            8889999999998876542       1    1234555556677789999999999887552  12222  334555666


Q ss_pred             HHHccCCHHHHHHHHHHHhhh---CCCcCCH-HH-HHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHH
Q 038373          238 ACASAEAVKEGFLYFEIMKND---YGIVPGI-EH-YIAIIKVLGSAGHLIEAEEFVERMPF-E-PTV----EVWEALRNF  306 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~---~g~~p~~-~~-y~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~t~~~li~~  306 (475)
                      .....|+.++|.+.+.....-   .+..... .. -...+..+...|+.+.|.+++..... . ...    ..+..+..+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            777899999999988877521   1111111 00 01123455668999999999877621 1 111    113344556


Q ss_pred             HHHcCCchHHHHHHHHHhc
Q 038373          307 AQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       307 ~~~~g~~~~a~~~~~~l~~  325 (475)
                      +...|+.++|...++...+
T Consensus       701 ~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        701 QILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            7788998777666554433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.85  E-value=0.0044  Score=51.16  Aligned_cols=79  Identities=9%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMR---------------KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY  259 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~---------------~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~  259 (475)
                      .++.++|.++++.|+.+....+.+..-               ...+.||..+..+++.+|+..|++..|.++.+...+.+
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344555555555555555444443321               12334445555555555555555555555555444444


Q ss_pred             CCcCCHHHHHHHHH
Q 038373          260 GIVPGIEHYIAIIK  273 (475)
Q Consensus       260 g~~p~~~~y~~li~  273 (475)
                      ++..+..+|..|+.
T Consensus        83 ~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   83 PIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCCHHHHHHHHH
Confidence            44444444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN02789 farnesyltranstransferase

Probab=96.82  E-value=0.43  Score=46.35  Aligned_cols=169  Identities=8%  Similarity=0.012  Sum_probs=117.3

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCCh--HH
Q 038373          139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC-NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQG--AD  212 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g-~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~--~~  212 (475)
                      ...+..++|..+...+++.. .-+..+|+-.-.++.+.| ++++++..++++.+   ++..+|+.--..+.+.|+.  ++
T Consensus        48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            34567788888888888753 233445555555666667 68999999998764   3566788766666666763  67


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc---CCH----HHHH
Q 038373          213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA---GHL----IEAE  285 (475)
Q Consensus       213 A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~---g~~----~~A~  285 (475)
                      ++.++++|.+... -|..+|+..-.++.+.|+++++.+.++.+.+. +.. |...|+..-..+.+.   |..    +++.
T Consensus       127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence            8999999987543 27789999999999999999999999999843 443 455666555545444   323    4566


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038373          286 EFVERM-PFEP-TVEVWEALRNFAQIHG  311 (475)
Q Consensus       286 ~~~~~m-~~~p-~~~t~~~li~~~~~~g  311 (475)
                      ++..+. ...| |...|+-+-..+...+
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~  231 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDK  231 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCC
Confidence            666444 3333 6678988888777643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.81  E-value=0.034  Score=44.87  Aligned_cols=90  Identities=14%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 038373          167 NKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAA  238 (475)
Q Consensus       167 ~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~  238 (475)
                      -.+...+.+.|++++|.+.|+.+.+  |+    ...+..+...+.+.|++++|...|++.......  .....+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            3344444445555555555554432  11    123333444455555555555555554432111  012233344444


Q ss_pred             HHccCCHHHHHHHHHHHh
Q 038373          239 CASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~~m~  256 (475)
                      +.+.|+.++|...++++.
T Consensus        86 ~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHhCChHHHHHHHHHHH
Confidence            444455555555555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.81  E-value=0.7  Score=47.74  Aligned_cols=222  Identities=16%  Similarity=0.061  Sum_probs=134.0

Q ss_pred             HHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR  183 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~  183 (475)
                      ++.-|+-++|.+..+.+.+.. -+.+.|..+--.+-...+.++|.+.|....+.+ +-|...+--|--.-++.|+++...
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence            344566666666666555433 233445544444445566777777777666655 445555554444444445555444


Q ss_pred             HHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHH
Q 038373          184 KVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVF------AACASAEAVKEGFLYFE  253 (475)
Q Consensus       184 ~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li------~~~~~~g~~~~a~~~~~  253 (475)
                      ..-...-+   ..-..|..+.-++--.|+...|..+.++....- -.|+...|--..      .-..+.|..++|.+.+.
T Consensus       130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~  209 (700)
T KOG1156|consen  130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL  209 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            43333322   244578888889999999999999999988754 246665554332      23456788888888776


Q ss_pred             HHhhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--HcCCchHHHHHHHHHhccCCC
Q 038373          254 IMKNDYGIVPGIEHY-IAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQ--IHGDVELEDRAEELLGDLDPS  329 (475)
Q Consensus       254 ~m~~~~g~~p~~~~y-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~l~~~~~~  329 (475)
                      .-..  .+ .|-..| -+-.+.+.+.|++++|..++..+ ...||.+-|.-.+..+.  -.+..+.....+..+.+.-|.
T Consensus       210 ~~e~--~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r  286 (700)
T KOG1156|consen  210 DNEK--QI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR  286 (700)
T ss_pred             hhhh--HH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence            5542  22 233333 35567789999999999999988 44688888877665333  233333333555555554444


Q ss_pred             C
Q 038373          330 K  330 (475)
Q Consensus       330 ~  330 (475)
                      .
T Consensus       287 ~  287 (700)
T KOG1156|consen  287 H  287 (700)
T ss_pred             c
Confidence            3

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.81  E-value=0.041  Score=48.26  Aligned_cols=126  Identities=10%  Similarity=-0.005  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      .|..+-..+.+.|++++|...|++.....|+    ...+..+-..+.+.|++++|...+....+.. .-+...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3444444555556666666655554432222    1234444455555555555555555554432 1233344444444


Q ss_pred             HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                      |...|+...+..-++...                 ..+++|.+++++...  ..|+.  |..++.-+...|+
T Consensus       116 ~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~  166 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence            444444333332222110                 114667777766654  33443  6666666655554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.80  E-value=0.034  Score=44.87  Aligned_cols=93  Identities=14%  Similarity=0.091  Sum_probs=38.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHH
Q 038373          199 LMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVL  275 (475)
Q Consensus       199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~  275 (475)
                      .+...+.+.|++++|.+.|.++....-.  .....+..+...+.+.|++++|...++.+.....-.+ ....+..+...|
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3344444455555555555554432100  0112333344444455555555555554442211100 122233444444


Q ss_pred             HhcCCHHHHHHHHHhC
Q 038373          276 GSAGHLIEAEEFVERM  291 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m  291 (475)
                      .+.|+.++|.+.+++.
T Consensus        87 ~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        87 QELGDKEKAKATLQQV  102 (119)
T ss_pred             HHhCChHHHHHHHHHH
Confidence            4455555555555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.053  Score=54.86  Aligned_cols=189  Identities=12%  Similarity=0.057  Sum_probs=123.4

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373          139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM  215 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~  215 (475)
                      .+.|++.+|.-.|+..++.. +-+...|--|--.-...++=..|...+.+..+  | |...--+|--.|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34566666666666665553 33455555555555555555556655555443  2 55566666677777777777777


Q ss_pred             HHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373          216 LFEQMRKTGPH--------PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF  287 (475)
Q Consensus       216 l~~~M~~~g~~--------pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~  287 (475)
                      .|+.-.....+        ++..+=++  +.+.....+.+..++|-++....+..+|..+++.|=-.|--.|++++|.+.
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            77776543211        00000000  122223345566667777766667556666677777778899999999999


Q ss_pred             HHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          288 VERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       288 ~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      |+.. .++| |..+||-|=..++...+-++|..|+..-.++.|.-
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            9987 4555 67899999999998888999999999998887664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.49  Score=43.37  Aligned_cols=177  Identities=14%  Similarity=0.144  Sum_probs=115.2

Q ss_pred             CCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChH
Q 038373          142 KSIEMGKRVHELLRT---SA-FVKDVEL-NNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGA  211 (475)
Q Consensus       142 ~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~  211 (475)
                      .+.++..+++.+|+.   .| ..++..+ |--++-+...+|+.+.|..++++...  |   -+.-..+|.  +-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence            455666666666643   24 5555543 44455566677888888888887653  2   222222222  34478899


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +|+++++...++. +-|.++|--=+...-..|+--+|.+-+....+  .|.-|...|--|-+.|...|++++|.-.++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999988876 44777887666666666777788877777773  56778888999999999999999999999998


Q ss_pred             -CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          292 -PFEPTVE-VWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       292 -~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                       -+.|-.. -+..+-..+-..|..+.-+-+.+.+
T Consensus       181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             3345443 3444444444444444333343333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.37  Score=46.20  Aligned_cols=105  Identities=12%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCccccc
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALR-NFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSA  346 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li-~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  346 (475)
                      .+..+++..|...+|+++|-++ +.+ .|..+|.+++ ..|.++|..   +-||+++..++.....+..+.         
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP---~lAW~~~lk~~t~~e~fsLLq---------  465 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP---QLAWDMMLKTNTPSERFSLLQ---------  465 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc---hHHHHHHHhcCCchhHHHHHH---------
Confidence            4667889999999999999888 322 5788888877 477888888   668888877765544332110         


Q ss_pred             ceeEEecCeEEEEEccCcc-chHHHHHHHHHHHHHHcCcccCCccccccccHHHH
Q 038373          347 TNMLEEKNRVSDYRSTDLY-RGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK  400 (475)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~  400 (475)
                                  .+...|+ .+++--|-+-|+++..  .-|++..|..--.+|..
T Consensus       466 ------------lIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG  506 (557)
T KOG3785|consen  466 ------------LIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAG  506 (557)
T ss_pred             ------------HHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHH
Confidence                        1111122 2334445555655543  35777777766666643

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.63  E-value=0.033  Score=46.02  Aligned_cols=85  Identities=20%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHh--------------hhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 038373          228 DKETFLVVFAACASAEAVKEGFLYFEIMK--------------NDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--  291 (475)
Q Consensus       228 d~~t~~~li~~~~~~g~~~~a~~~~~~m~--------------~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--  291 (475)
                      |..++.++|-++++.|+++....+.+..-              ....+.|+..+-.+++.+|+..|++..|.++++..  
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            56789999999999999999988886543              11235678889999999999999999999998887  


Q ss_pred             --CCCCCHHHHHHHHHHHHHcCC
Q 038373          292 --PFEPTVEVWEALRNFAQIHGD  312 (475)
Q Consensus       292 --~~~p~~~t~~~li~~~~~~g~  312 (475)
                        ++.-+..+|..|+.-+...-+
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHhcC
Confidence              677779999999985544433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.76  Score=49.93  Aligned_cols=86  Identities=17%  Similarity=0.297  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV  274 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~  274 (475)
                      ..|.-+-.+-.+.|.+.+|++-|-+.      -|...|.-+|+.+.+.|.+++-.+++...+++ .-+|.+.  +.||-+
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFA 1175 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHH
Confidence            36999999999999999998877542      37789999999999999999999988777644 6677654  789999


Q ss_pred             HHhcCCHHHHHHHHH
Q 038373          275 LGSAGHLIEAEEFVE  289 (475)
Q Consensus       275 ~~~~g~~~~A~~~~~  289 (475)
                      |++.+++.+-++++.
T Consensus      1176 yAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA 1190 (1666)
T ss_pred             HHHhchHHHHHHHhc
Confidence            999999999888764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.56  E-value=0.04  Score=54.56  Aligned_cols=95  Identities=8%  Similarity=-0.089  Sum_probs=53.5

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373          139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM  215 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~  215 (475)
                      ...|+++.|.+.|.+.++.. .-+...|..+-.+|.+.|++++|...+++..+  | +...|..+-.+|...|++++|+.
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            34455666666666655543 33455555555666666666666666665542  2 44456666666666666666666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHH
Q 038373          216 LFEQMRKTGPHPDKETFLVVF  236 (475)
Q Consensus       216 l~~~M~~~g~~pd~~t~~~li  236 (475)
                      .|++..+  +.|+...+...+
T Consensus        92 ~~~~al~--l~P~~~~~~~~l  110 (356)
T PLN03088         92 ALEKGAS--LAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHH--hCCCCHHHHHHH
Confidence            6666655  344444443333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.55  E-value=0.0086  Score=45.58  Aligned_cols=79  Identities=14%  Similarity=0.208  Sum_probs=36.9

Q ss_pred             cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHHHHHHhcCCHHHH
Q 038373          207 NGQGADGLMLFEQMRKTGP-HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAIIKVLGSAGHLIEA  284 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li~~~~~~g~~~~A  284 (475)
                      .|++++|+.+|+++.+... .|+...+-.+..++.+.|++++|..+++. .   ...++. ...-.+-.+|.+.|+.++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3555666666666555332 12233333355555666666666666555 1   111211 1222334555566666666


Q ss_pred             HHHHH
Q 038373          285 EEFVE  289 (475)
Q Consensus       285 ~~~~~  289 (475)
                      .++|+
T Consensus        78 i~~l~   82 (84)
T PF12895_consen   78 IKALE   82 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.54  E-value=0.029  Score=51.85  Aligned_cols=99  Identities=16%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 038373          142 KSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN-GQGADGLMLFEQM  220 (475)
Q Consensus       142 ~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~-g~~~~A~~l~~~M  220 (475)
                      +.++--...++.|.+.|++.|..+|+.||+.+=|-.-+                .-|.+=..|..- .+-+-++.++++|
T Consensus        86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~nvfQ~~F~HYP~QQ~C~I~vLeqM  149 (406)
T KOG3941|consen   86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQNVFQKVFLHYPQQQNCAIKVLEQM  149 (406)
T ss_pred             chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHHHHHHHHhhCchhhhHHHHHHHHH
Confidence            34555555678899999999999999999987653211                111111222222 1234589999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 038373          221 RKTGPHPDKETFLVVFAACASAEAV-KEGFLYFEIMK  256 (475)
Q Consensus       221 ~~~g~~pd~~t~~~li~~~~~~g~~-~~a~~~~~~m~  256 (475)
                      ...|+.||..+--.|++++.+.+-- .+..++.-.|-
T Consensus       150 E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  150 EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            9999999999999999999887643 33444444454

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.53  E-value=0.087  Score=46.19  Aligned_cols=58  Identities=16%  Similarity=0.007  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .+..+...|.+.|++++|...|++..+  ++    ...|..+...|.+.|++++|...+++..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444455555555555555555554431  11    23455555555555555555555555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.38  Score=52.10  Aligned_cols=199  Identities=14%  Similarity=0.105  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|.-+-.+-.+.|.+.+|.+-|-+.    -|+..|.-+|..+.+.|.+++-.+.+...++..-+|.+  -+.||-+|+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYA 1177 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence            345777777777777777777766544    35677999999999999999999998888877766654  468999999


Q ss_pred             HcCCHHHHHHHHHhccc-----------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373          175 KCCNTRLARKVFDQLRK-----------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET  231 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~-----------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t  231 (475)
                      |.+++.+-+++...-..                       .++.-|.-|-..+...|++..|..--++.      -+..|
T Consensus      1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred             HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence            99999887765432100                       12334444555555555555555443321      24456


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 038373          232 FLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQI  309 (475)
Q Consensus       232 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~  309 (475)
                      |--+-.+|...+.+.-|     +|. ...+..-..-..-||.-|-..|-+++-..+++.- |++ ...-.|+-|--.|.+
T Consensus      1252 WK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence            66666666655554433     333 1122223334567888888889888888888765 544 344556666666776


Q ss_pred             cC
Q 038373          310 HG  311 (475)
Q Consensus       310 ~g  311 (475)
                      ..
T Consensus      1326 yk 1327 (1666)
T KOG0985|consen 1326 YK 1327 (1666)
T ss_pred             cC
Confidence            54

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.48  E-value=0.61  Score=45.23  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL  275 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~  275 (475)
                      +-+..|.-+...|+...|.++-++..    .||..-|-..|.+++..++|++-.++... + +     ..+-|-..++.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-K-----sPIGyepFv~~~  247 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-K-----SPIGYEPFVEAC  247 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-C-----CCCChHHHHHHH
Confidence            44445566666777777777766652    46777777777777777777766654332 1 1     235677777777


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 038373          276 GSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELED  317 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~  317 (475)
                      .+.|+..+|..++.+++       +..-+..|.+.|++.+|.
T Consensus       248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~  282 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAA  282 (319)
T ss_pred             HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHH
Confidence            77777777777777643       233455566667765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.43  E-value=0.26  Score=53.94  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=100.7

Q ss_pred             hcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHH
Q 038373          120 QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHL  199 (475)
Q Consensus       120 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~  199 (475)
                      .+...+-+...+-.+-.+|-+.|+.+++.++|+++++.. .-|..+.|-+-..|+.. ++++|.+++.+..+.       
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------  178 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------  178 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence            343333444667778888889999999999999999988 67899999999999999 999999998765433       


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373          200 MISGYAANGQGADGLMLFEQMRKT-------------------GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG  260 (475)
Q Consensus       200 li~~~~~~g~~~~A~~l~~~M~~~-------------------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g  260 (475)
                          |...+++.+++++|.++...                   |..--..++--|-..|....+++++..+++.+.   .
T Consensus       179 ----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL---~  251 (906)
T PRK14720        179 ----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL---E  251 (906)
T ss_pred             ----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---h
Confidence                45555666666666665542                   222233444455577778888999999999988   3


Q ss_pred             CcC-CHHHHHHHHHHHH
Q 038373          261 IVP-GIEHYIAIIKVLG  276 (475)
Q Consensus       261 ~~p-~~~~y~~li~~~~  276 (475)
                      ..| |.....-|+..|.
T Consensus       252 ~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        252 HDNKNNKAREELIRFYK  268 (906)
T ss_pred             cCCcchhhHHHHHHHHH
Confidence            344 4445555666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.42  E-value=0.099  Score=45.61  Aligned_cols=79  Identities=8%  Similarity=-0.144  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ...|..+...+...|++++|+..|++.....|+    ..++..+-..+...|+.++|.+.+....+.. +....+++.+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            345566666666777777777777765432222    1245555556666666666666666665442 22233344444


Q ss_pred             HHHH
Q 038373          171 EMYG  174 (475)
Q Consensus       171 ~~~~  174 (475)
                      ..|.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            4444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.35  Score=49.35  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=85.1

Q ss_pred             HHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--H
Q 038373          101 NLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL--IEMYG--K  175 (475)
Q Consensus       101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L--i~~~~--k  175 (475)
                      =++-+...|++++|++.-.+.....||..+ +..=+-+..+.+.+++|..+.+   ..+   -..+++..  =.+||  +
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence            456678889999999999887776676554 6666667788888998885544   222   12233333  45565  6


Q ss_pred             cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373          176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~  225 (475)
                      .+..|+|...++....-|..+-..=-..+-+.|++++|+.+|+.+.+.+.
T Consensus        92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            78999999999966555554555555667889999999999999977654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.54  Score=44.05  Aligned_cols=187  Identities=16%  Similarity=0.121  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGK  175 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k  175 (475)
                      +++.|..+.+..++++|.+++..-....| +....+.|-.+|-...++..|-..++++-..  .|...-|.-- -..+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence            45666677888899999999875544445 6666888888888999999999999988654  4555444322 234567


Q ss_pred             cCCHHHHHHHHHhccc-CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRK-RNLSSWHLMISG--YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~-~~~~tyn~li~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      ++.+.+|.+|...|.. ++...-..=+.+  .-..+++..+..++++...+|   +..+.+..--..-+.|+.++|.+-|
T Consensus        91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence            8889999999988875 332221111111  223566666777776654332   2222222222234677788888777


Q ss_pred             HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +...+-.|+.|-+ .||.-+.- -+.|+.+.|+++..++
T Consensus       168 qaAlqvsGyqpll-AYniALaH-y~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  168 QAALQVSGYQPLL-AYNLALAH-YSSRQYASALKHISEI  204 (459)
T ss_pred             HHHHhhcCCCchh-HHHHHHHH-HhhhhHHHHHHHHHHH
Confidence            7777666666643 56655543 3456777777776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.40  E-value=0.13  Score=49.13  Aligned_cols=201  Identities=16%  Similarity=0.171  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhccc----CC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL  169 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L  169 (475)
                      .|+-.-..|-..|++++|.+.|.+...    .+ +..  ..|......+-+. ++++|.+.               |.-.
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A  100 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKA  100 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHH
Confidence            466666677777778877777764321    11 111  1133322222222 44444444               3444


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcc
Q 038373          170 IEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN-GQGADGLMLFEQMRK----TGPHPD--KETFLVVFAACASA  242 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~-g~~~~A~~l~~~M~~----~g~~pd--~~t~~~li~~~~~~  242 (475)
                      +..|.+.|++..|-+++.++           -..|-.. |++++|++.|++-.+    .| .+.  ..++..+...+.+.
T Consensus       101 ~~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence            56677777777776665543           3345555 677777777776543    23 221  23556667778888


Q ss_pred             CCHHHHHHHHHHHhhhCCC-----cCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHH
Q 038373          243 EAVKEGFLYFEIMKNDYGI-----VPGIE-HYIAIIKVLGSAGHLIEAEEFVERM-PFEP------TVEVWEALRNFAQI  309 (475)
Q Consensus       243 g~~~~a~~~~~~m~~~~g~-----~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m-~~~p------~~~t~~~li~~~~~  309 (475)
                      |++++|.++|+++... -.     ..++. .|-..+-.+...|+...|.+.|++. ...|      ....-..||.+|- 
T Consensus       169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-  246 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-  246 (282)
T ss_dssp             T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence            8999999888887643 22     12222 2222333555578888888888876 2222      2334455566654 


Q ss_pred             cCCchHHHHHHHHHhccC
Q 038373          310 HGDVELEDRAEELLGDLD  327 (475)
Q Consensus       310 ~g~~~~a~~~~~~l~~~~  327 (475)
                      .|+.+....+...+..+.
T Consensus       247 ~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  247 EGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             TT-CCCHHHHCHHHTTSS
T ss_pred             hCCHHHHHHHHHHHcccC
Confidence            677776666666665554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.38  E-value=0.016  Score=44.02  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=8.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHh
Q 038373          169 LIEMYGKCCNTRLARKVFDQ  188 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~  188 (475)
                      +..+|.+.|+.++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            34444444444444444433

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.36  E-value=0.027  Score=52.02  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             HHHHHHHhcc--cCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 038373          181 LARKVFDQLR--KRNLSSWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE----------  243 (475)
Q Consensus       181 ~A~~~f~~m~--~~~~~tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g----------  243 (475)
                      -.++.|...+  ++|-.+|-+++..|...     +.++-....++.|.+.|+.-|..+|+.||+.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3455666666  67777888888777654     556777777889999999999999999998875532          


Q ss_pred             ------CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCH
Q 038373          244 ------AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL  281 (475)
Q Consensus       244 ------~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~  281 (475)
                            .-+=+..++++|+ .+|+.||-.+-..||+++++.|..
T Consensus       132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence                  1234678999999 679999999999999999999874

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.23  E-value=0.15  Score=52.99  Aligned_cols=136  Identities=7%  Similarity=-0.016  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHhcc-
Q 038373          126 AGYDVFSSLLDSCGNL-----KSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKC--------CNTRLARKVFDQLR-  190 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~--------g~~~~A~~~f~~m~-  190 (475)
                      .|...|...+.+....     ++.+.|..+|++..+.  .|| ...|..|..+|...        +++..+.+..+... 
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            5667788888875433     2367888888888876  354 44454443333221        12444555544422 


Q ss_pred             ----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH
Q 038373          191 ----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE  266 (475)
Q Consensus       191 ----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~  266 (475)
                          ..+...|.++--.....|++++|...|++..+..  |+...|..+-..+...|+.++|.+.+++..   .+.|...
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~p  487 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGEN  487 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCc
Confidence                1244677777666667899999999999988744  788889999999999999999999988876   3455544


Q ss_pred             HH
Q 038373          267 HY  268 (475)
Q Consensus       267 ~y  268 (475)
                      ||
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            44

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.21  E-value=1.2  Score=42.61  Aligned_cols=224  Identities=13%  Similarity=0.046  Sum_probs=154.6

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCHH----------------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGYD----------------VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~~----------------t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      +.+.|.+++|..=|+......|+..                .....+..+...|+...|......+++.. .-|...|-.
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~  194 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA  194 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence            6789999999998887655444221                12334555667789999999999998865 578889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH------
Q 038373          169 LIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET----FLVV------  235 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t----~~~l------  235 (475)
                      --.+|...|++..|..=+....   .-|+.+.--+-.-+...|+.+.++...++-.+  +.||...    |-.|      
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence            9999999999999987665443   34666666666777888999999988888766  5676532    1111      


Q ss_pred             ---HHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 038373          236 ---FAACASAEAVKEGFLYFEIMKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFA  307 (475)
Q Consensus       236 ---i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~  307 (475)
                         +......++|-++.+-.+...+. .-.-..+.   +..+-..|...|++-+|.+.-.+. .+.|| +.++.-=..+|
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence               11223456666666666555422 22212233   345666778889999998877666 55565 66766666788


Q ss_pred             HHcCCchHHHHHHHHHhccCCCChh
Q 038373          308 QIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       308 ~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      .-..+.+.|..-++.-.+.++++..
T Consensus       352 l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhcCcccHH
Confidence            8788888888888888888777653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.20  E-value=0.41  Score=49.42  Aligned_cols=174  Identities=7%  Similarity=0.045  Sum_probs=97.1

Q ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373          112 REAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       112 ~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      +.++-++.+|.+      .|-.-+....+.+++..-...|+..+.. -+.-...+|.-.|...-..|-.+-+.+++++-.
T Consensus        92 er~lv~mHkmpR------Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL  165 (835)
T KOG2047|consen   92 ERCLVFMHKMPR------IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL  165 (835)
T ss_pred             HHHHHHHhcCCH------HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence            444555555533      3444444455666666666666655443 333334455666666666666667777776665


Q ss_pred             cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC
Q 038373          191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG  264 (475)
Q Consensus       191 ~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~  264 (475)
                      +-+...-+--|.-+++.+++++|-+.+......      .-+-+...|.-+-+-.++..+.-....+=..|+.-.+.-+|
T Consensus       166 k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD  245 (835)
T KOG2047|consen  166 KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD  245 (835)
T ss_pred             hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH
Confidence            544444555666667777777776666554331      12334455555555555555444433333333321133344


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          265 --IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       265 --~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                        ...|++|.+-|.+.|++++|.++|++-
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeea  274 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEA  274 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence              245677777788888888888777664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.19  E-value=0.077  Score=52.53  Aligned_cols=92  Identities=13%  Similarity=0.028  Sum_probs=47.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHH
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLI  282 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~  282 (475)
                      +...|++++|+++|++..+... -+...|..+-.++.+.|++++|...++....   +.| +...|..+-.+|...|+++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHH
Confidence            3445556666666655554321 1334455555555556666666666555552   233 3344555555556666666


Q ss_pred             HHHHHHHhC-CCCCCHHH
Q 038373          283 EAEEFVERM-PFEPTVEV  299 (475)
Q Consensus       283 ~A~~~~~~m-~~~p~~~t  299 (475)
                      +|.+.|++. .+.|+...
T Consensus        88 eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         88 TAKAALEKGASLAPGDSR  105 (356)
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            666666554 33344333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.08  E-value=0.04  Score=39.76  Aligned_cols=49  Identities=14%  Similarity=0.047  Sum_probs=26.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373          141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      .|++++|.++++.+.+.. +-+..+.-.|..+|.+.|++++|.++++.+.
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455555555555555443 2244555555555555566666666555554

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.08  E-value=0.15  Score=44.51  Aligned_cols=61  Identities=10%  Similarity=0.034  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP--DKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .|..+...+...|++++|+..|++.......|  ...+|..+-..+...|+.++|...++...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45555555555566666666665554432111  12345555555556666666666665554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.00  E-value=0.03  Score=40.38  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             ccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038373          241 SAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEAL  303 (475)
Q Consensus       241 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~l  303 (475)
                      +.|++++|.++|+.+...   .| +...+-.+...|.+.|++++|.++++++ ...|+...|..|
T Consensus         3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            345556666666655532   22 3444455666666666666666666666 334554444443

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.00  E-value=0.33  Score=50.46  Aligned_cols=141  Identities=8%  Similarity=-0.024  Sum_probs=96.6

Q ss_pred             cCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcC--------ChHHHHHHHHHH
Q 038373          157 SAFVKDVELNNKLIEMYGK--CC---NTRLARKVFDQLRK--RN-LSSWHLMISGYAANG--------QGADGLMLFEQM  220 (475)
Q Consensus       157 ~g~~p~~~~~~~Li~~~~k--~g---~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g--------~~~~A~~l~~~M  220 (475)
                      .+...|...|...+.+...  .+   ..+.|..+|++..+  || ...|..+..+|....        +...+.+...+.
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4457888999999887554  33   37899999998874  54 345555444443321        123334444433


Q ss_pred             HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 038373          221 RKT-GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE  298 (475)
Q Consensus       221 ~~~-g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  298 (475)
                      ... ....+...|..+--.....|++++|...+++..   .+.|+...|..+-..|...|+.++|.+.+++- .+.|...
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            332 233355677766555556799999999999988   34578889999999999999999999999876 4455555


Q ss_pred             HH
Q 038373          299 VW  300 (475)
Q Consensus       299 t~  300 (475)
                      ||
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            54

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.38  Score=45.02  Aligned_cols=142  Identities=15%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             HHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------CCH-----
Q 038373          172 MYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-------------PDK-----  229 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-------------pd~-----  229 (475)
                      ...+.|+.+.|.+-|....+    ...+.||.-+..| +.|+.+.|+++..|..+.|++             ||+     
T Consensus       153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN  231 (459)
T KOG4340|consen  153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN  231 (459)
T ss_pred             eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence            34467777777777776553    2456777666544 456777788877777776643             221     


Q ss_pred             -HH--HHHHHHHH-------HccCCHHHHHHHHHHHhhhCCCcCCHHHH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373          230 -ET--FLVVFAAC-------ASAEAVKEGFLYFEIMKNDYGIVPGIEHY--IAIIKVLGSAGHLIEAEEFVERM-PFEPT  296 (475)
Q Consensus       230 -~t--~~~li~~~-------~~~g~~~~a~~~~~~m~~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~~~~~m-~~~p~  296 (475)
                       .+  -+.++.++       -+.|+.+.|.+.+-.|-.+..-+.|.+|.  -+|.++=++-|.--+-+.++-+. ++  -
T Consensus       232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf--P  309 (459)
T KOG4340|consen  232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF--P  309 (459)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCC--C
Confidence             11  12233332       35667777777766665333333333333  34444444334333333333333 32  2


Q ss_pred             HHHHHHHHHHHHHcCCchHH
Q 038373          297 VEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       297 ~~t~~~li~~~~~~g~~~~a  316 (475)
                      ..||..++-.||++.-++.|
T Consensus       310 ~ETFANlLllyCKNeyf~lA  329 (459)
T KOG4340|consen  310 PETFANLLLLYCKNEYFDLA  329 (459)
T ss_pred             hHHHHHHHHHHhhhHHHhHH
Confidence            35666677777777766443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.89  E-value=2.2  Score=45.83  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=125.8

Q ss_pred             CCCHHHHHHHHHH--HHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           92 NAQLESLDVNLLS--LCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        92 ~~~~~~~n~li~~--~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      .|+. .|...+.+  +.|.|+.++|..+++.....+ -|..|..++-.+|-..++.++|..+|++..+.  -|+......
T Consensus        39 ~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~  115 (932)
T KOG2053|consen   39 HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH  115 (932)
T ss_pred             CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence            3444 34445555  458899999998888654433 47788999999999999999999999988765  577778888


Q ss_pred             HHHHHHHcCCHHH----HHHHHHhcccCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcC-CCCCHHHHH
Q 038373          169 LIEMYGKCCNTRL----ARKVFDQLRKRNLSSWHLMISGYAANGQ----------GADGLMLFEQMRKTG-PHPDKETFL  233 (475)
Q Consensus       169 Li~~~~k~g~~~~----A~~~f~~m~~~~~~tyn~li~~~~~~g~----------~~~A~~l~~~M~~~g-~~pd~~t~~  233 (475)
                      +..+|.|.+++.+    |.+++...++.--.-|+ +|+-+.+.-.          ..-|.+.++.+.+.+ -.-+..-.-
T Consensus       116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~  194 (932)
T KOG2053|consen  116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII  194 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence            8889999887665    55566655544444444 3444433211          123556666666554 222222233


Q ss_pred             HHHHHHHccCCHHHHHHHHH-HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          234 VVFAACASAEAVKEGFLYFE-IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~-~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .-+..+...|++++|.+++. ...++ -..-+...-+--++.+...+++.+-.++-.+.
T Consensus       195 Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  195 LYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            33344566788999999884 33322 22223444456778888899888877665555

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.54  Score=43.30  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=33.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      .+.++..+-..+.+.-...++.+.++..-+.++.....|..+-.+.|+++.|...|+..+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve  239 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE  239 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344444444555555555566665555444555556666666666666666666666443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.85  E-value=3.4  Score=44.57  Aligned_cols=177  Identities=14%  Similarity=0.105  Sum_probs=122.7

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC--GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      ....+++.+|++...+..+.-||. .|..+++++  .+.|..++|..+++.....+.. |..|..+|-.+|-+.|+.++|
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence            456788999999888766655775 477777776  5789999999888888766633 999999999999999999999


Q ss_pred             HHHHHhccc--CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------CHH
Q 038373          183 RKVFDQLRK--RNLSSWHLMISGYAANGQGAD----GLMLFEQMRKTGPHPDKETFLVVFAACASAE----------AVK  246 (475)
Q Consensus       183 ~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~----A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g----------~~~  246 (475)
                      ..+|+...+  |+..--..+..+|.+.+.+.+    |+++++.     +.-+...|=++++.....-          -+.
T Consensus        97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            999998874  665566667778888877654    4555542     2234455555555543321          134


Q ss_pred             HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373          247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVE  289 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~  289 (475)
                      -|.+.++.+.++.| ... ..-.-.-...+-..|+.++|.+++.
T Consensus       172 LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~  214 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLA  214 (932)
T ss_pred             HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            56777777776644 222 2112222344567788999999983

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.82  E-value=0.21  Score=40.84  Aligned_cols=106  Identities=11%  Similarity=0.113  Sum_probs=72.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc
Q 038373          202 SGYAANGQGADGLMLFEQMRKTGPHPD--KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA  278 (475)
Q Consensus       202 ~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~  278 (475)
                      .++-..|+.++|+.+|++-...|+...  ...+..+-+.+...|+.++|..+++....++.-.+ +......+--++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            456678999999999999988887665  34666777888899999999999988875421101 111222233467888


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373          279 GHLIEAEEFVERMPFEPTVEVWEALRNFAQ  308 (475)
Q Consensus       279 g~~~~A~~~~~~m~~~p~~~t~~~li~~~~  308 (475)
                      |+.++|.+.+-..- -++...|.--|.+|.
T Consensus        89 gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   89 GRPKEALEWLLEAL-AETLPRYRRAIRFYA  117 (120)
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            99999988875541 234446666666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.80  E-value=0.13  Score=48.17  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCH
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHL  281 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~  281 (475)
                      ..+++++.+|+..|.+-++  +.| |.+-|..--.+|++.|.++.|.+=.+...   .+.|. ..+|..|=-+|...|++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence            5678899999999999887  455 66777888889999999999887666555   34553 56788888899999999


Q ss_pred             HHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373          282 IEAEEFVERM-PFEPTVEVWEALRN  305 (475)
Q Consensus       282 ~~A~~~~~~m-~~~p~~~t~~~li~  305 (475)
                      ++|.+.|++- .+.|+-.+|-.=|.
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHH
Confidence            9999998887 78888888766554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.78  E-value=0.63  Score=47.13  Aligned_cols=126  Identities=14%  Similarity=0.189  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK  273 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~  273 (475)
                      .+|-.+|+.--+..-+..|..+|.+..+.+..+ ++..++++|.-+|. ++.+-|.++|+-=.+++|=.|  .--...++
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSP--EYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence            366667776666666777888888888877777 67777777777764 566777777776443444332  22356777


Q ss_pred             HHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          274 VLGSAGHLIEAEEFVERM---PFEPT--VEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       274 ~~~~~g~~~~A~~~~~~m---~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      -+..-++=..|..+|++.   ++.||  ...|..+|..=...|+++.+.++.+..
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR  498 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            777778877888888777   22332  467888888777778876655554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.93  Score=47.25  Aligned_cols=184  Identities=14%  Similarity=0.123  Sum_probs=111.5

Q ss_pred             hHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCCHHH
Q 038373          111 VREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRT-SAFVK--------DVELNNKLIEMYGKCCNTRL  181 (475)
Q Consensus       111 ~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p--------~~~~~~~Li~~~~k~g~~~~  181 (475)
                      .++|.++.++    .|-+.-|..|-.+....-.++.|...|-+... .|++.        +...-.+=|.+|.  |++++
T Consensus       679 ledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--g~fee  752 (1189)
T KOG2041|consen  679 LEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--GEFEE  752 (1189)
T ss_pred             hHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--cchhH
Confidence            3444444433    36677777776666566667777666654432 13321        1122233344443  89999


Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373          182 ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP----DKETFLVVFAACASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       182 A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p----d~~t~~~li~~~~~~g~~~~a~~~~~~m~~  257 (475)
                      |+++|-+|.++|..     |.-+.+.|++-...++++.   -|-.-    -...|+.+-..+.....|++|.+.+..-..
T Consensus       753 aek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  753 AEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999988853     5566777877666666542   11111    135777888888888888888887764431


Q ss_pred             hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 038373          258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAE  320 (475)
Q Consensus       258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~  320 (475)
                             .   .-+|++|.+..++++-+.+-..++  -|....-.|-+.+...|+-++|.+++
T Consensus       825 -------~---e~~~ecly~le~f~~LE~la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  825 -------T---ENQIECLYRLELFGELEVLARTLP--EDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             -------h---HhHHHHHHHHHhhhhHHHHHHhcC--cccchHHHHHHHHHhhchHHHHHHHH
Confidence                   1   345667777777777776666664  24444455666777777775554443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.72  E-value=2.3  Score=44.18  Aligned_cols=218  Identities=15%  Similarity=0.144  Sum_probs=121.1

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGYDVFS-SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGKCCNTRLA  182 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k~g~~~~A  182 (475)
                      ..++|.+++|++.+..-...-.|.+.|- +--..+.+.+++++|..++..++...  ||-.-|+-. ..++++.-+.-++
T Consensus       195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~  272 (700)
T KOG1156|consen  195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEA  272 (700)
T ss_pred             HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHH
Confidence            5567777788777654333223444432 23334567778888888888777663  555555443 4455444444444


Q ss_pred             H-HHHHhccc----------------------------------CCH-HHHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 038373          183 R-KVFDQLRK----------------------------------RNL-SSWHLMISGYAANGQGAD----GLMLFEQMRK  222 (475)
Q Consensus       183 ~-~~f~~m~~----------------------------------~~~-~tyn~li~~~~~~g~~~~----A~~l~~~M~~  222 (475)
                      . .+|....+                                  +++ .++..+.+-|-.-...+-    +..+..-+..
T Consensus       273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~  352 (700)
T KOG1156|consen  273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG  352 (700)
T ss_pred             HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence            4 55554431                                  000 133333333322221111    1111111211


Q ss_pred             cCC----------CCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 038373          223 TGP----------HPDKE--TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAIIKVLGSAGHLIEAEEFVE  289 (475)
Q Consensus       223 ~g~----------~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~  289 (475)
                      .|.          .|.+.  |+-.++..+-+.|+++.|..+.+...   +..|+. ..|-+=-..+...|++++|..+++
T Consensus       353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~  429 (700)
T KOG1156|consen  353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLD  429 (700)
T ss_pred             ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            111          34444  44456777788899999998888877   556653 344445577888899999999988


Q ss_pred             hC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          290 RM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       290 ~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      +. ++ .+|...-.-=.....+..+.++|+++..++.+-.
T Consensus       430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            77 21 3455443333445556778877777777765543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.68  E-value=1.2  Score=42.76  Aligned_cols=143  Identities=13%  Similarity=0.182  Sum_probs=98.5

Q ss_pred             CCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHhccc------
Q 038373          126 AGYDVFSSLLDSCGN--LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK--CC----NTRLARKVFDQLRK------  191 (475)
Q Consensus       126 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k--~g----~~~~A~~~f~~m~~------  191 (475)
                      ....++.++|..-..  ...+++...+++.|++.|+..+.++|-+..-..-.  ..    .+..|..+|+.|++      
T Consensus        58 ~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT  137 (297)
T PF13170_consen   58 NHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT  137 (297)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence            455667777766554  13367788999999999999998888774444333  22    37789999999985      


Q ss_pred             -CCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCc
Q 038373          192 -RNLSSWHLMISGYAANGQ----GADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       192 -~~~~tyn~li~~~~~~g~----~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~  262 (475)
                       ++-+++.+|+..  ..++    .+++...|+.+.+.|+..+ ..-+.+-|-+++....   +.++.++++.++++ |++
T Consensus       138 s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~k  214 (297)
T PF13170_consen  138 SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVK  214 (297)
T ss_pred             CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCc
Confidence             355678788765  3333    3667888999999898764 4344444445443222   55788889999955 999


Q ss_pred             CCHHHHHHH
Q 038373          263 PGIEHYIAI  271 (475)
Q Consensus       263 p~~~~y~~l  271 (475)
                      +...+|..+
T Consensus       215 ik~~~yp~l  223 (297)
T PF13170_consen  215 IKYMHYPTL  223 (297)
T ss_pred             cccccccHH
Confidence            888777643

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.65  E-value=1.1  Score=43.53  Aligned_cols=208  Identities=13%  Similarity=0.066  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCC---C---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----------CC
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASAS---A---GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA----------FV  160 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----------~~  160 (475)
                      +|..+-..-.+.|+.+-|..|++.-....   |   .-.-+...|.-..+.|+.+....++-.|.+.-          -.
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~   81 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQN   81 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            56666667778888888888876432200   0   00013444455556666666666655554421          01


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---------------CHH----HHHHHHHHHHhcCC-------hHHHH
Q 038373          161 KDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---------------NLS----SWHLMISGYAANGQ-------GADGL  214 (475)
Q Consensus       161 p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------------~~~----tyn~li~~~~~~g~-------~~~A~  214 (475)
                      |.   -+.|..-||+..+.+.-..+|.+-.+.               ++.    ........|.+..+       .++..
T Consensus        82 p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~  158 (319)
T PF04840_consen   82 PV---ASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQI  158 (319)
T ss_pred             cc---hHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            11   234555566655555555554433211               111    11122222333222       22222


Q ss_pred             HHHHHHHH----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          215 MLFEQMRK----TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       215 ~l~~~M~~----~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      ++++.-.+    .+......+.+..|.-|...|....|.++-.    ++++ ||..-|-.-|.+|+..|++++-.++-..
T Consensus       159 ~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s  233 (319)
T PF04840_consen  159 KLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS  233 (319)
T ss_pred             HHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence            33322211    1111122244444555555666655555433    3333 5666666667777777776666655432


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCchH
Q 038373          291 MPFEPTVEVWEALRNFAQIHGDVEL  315 (475)
Q Consensus       291 m~~~p~~~t~~~li~~~~~~g~~~~  315 (475)
                         +...+-|-.++.+|.+.|+..+
T Consensus       234 ---kKsPIGyepFv~~~~~~~~~~e  255 (319)
T PF04840_consen  234 ---KKSPIGYEPFVEACLKYGNKKE  255 (319)
T ss_pred             ---CCCCCChHHHHHHHHHCCCHHH
Confidence               2233566666666666666633

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.57  E-value=0.46  Score=47.51  Aligned_cols=66  Identities=12%  Similarity=0.025  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYD----VFSSLLDSCGNLKSIEMGKRVHELLRTS  157 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~  157 (475)
                      ..+...|+.+-.+|.+.|++++|+..|++.....|+..    +|..+-.+|++.|++++|.+.++...+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46678899999999999999999999999887778753    5899999999999999999999999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.53  E-value=0.94  Score=43.23  Aligned_cols=117  Identities=16%  Similarity=0.215  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhCCC--cC--CHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA-EAVKEGFLYFEIMKNDYGI--VP--GIEHYIA  270 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~g~--~p--~~~~y~~  270 (475)
                      .|.-.+..|...|++..|-+++.++-               ..|-.. |++++|.+.|....+-+.-  .+  -..++..
T Consensus        96 ~~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   96 CYEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            45566777888888888877776654               355566 7899998888776532111  11  1345677


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCC---C-----CCCHHH--HHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373          271 IIKVLGSAGHLIEAEEFVERMP---F-----EPTVEV--WEALRNFAQIHGDVELEDRAEELLGDLDP  328 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~t--~~~li~~~~~~g~~~~a~~~~~~l~~~~~  328 (475)
                      +...+.+.|++++|.++|++.+   .     +.++..  .+++| .+...|+...|.++++.+.+..|
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Confidence            8889999999999999999872   1     112221  23333 44557888788888887766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.49  E-value=0.55  Score=40.11  Aligned_cols=88  Identities=7%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038373          170 IEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK  246 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~  246 (475)
                      -.-+...|++++|.++|+-..  .| +..-|-.|-..|-..|++++|+..|.....-.. -|...+-.+-.++...|+.+
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC  120 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence            334556677777777776544  33 444556666666666777777777766665432 24455555566666667777


Q ss_pred             HHHHHHHHHhhh
Q 038373          247 EGFLYFEIMKND  258 (475)
Q Consensus       247 ~a~~~~~~m~~~  258 (475)
                      .|.+.|+.....
T Consensus       121 ~A~~aF~~Ai~~  132 (157)
T PRK15363        121 YAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHH
Confidence            777766665543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=1  Score=44.19  Aligned_cols=154  Identities=12%  Similarity=0.039  Sum_probs=110.4

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHH-HHHHhcCC-hH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMI-SGYAANGQ-GA  211 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li-~~~~~~g~-~~  211 (475)
                      .+...++.++|.=-|+...... +-+...|-.|++.|.-.|++.+|.-+-++.-   ..+..+.+.+- ..+.-... -+
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE  421 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE  421 (564)
T ss_pred             HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence            3456688888888888776653 3578899999999999999999887655432   12333332221 11222222 36


Q ss_pred             HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          212 DGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      +|..+++.-..  +.|+-. ..+.+..-|...|..+++..+++.-.   ...||...-+.|-+.+.....+.+|++.|..
T Consensus       422 KAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  422 KAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             HHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            78877776544  567654 56667778889999999999999877   3568999999999999999999999999876


Q ss_pred             C-CCCCC
Q 038373          291 M-PFEPT  296 (475)
Q Consensus       291 m-~~~p~  296 (475)
                      . .+.|+
T Consensus       497 ALr~dP~  503 (564)
T KOG1174|consen  497 ALRQDPK  503 (564)
T ss_pred             HHhcCcc
Confidence            5 44444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=1  Score=46.12  Aligned_cols=176  Identities=11%  Similarity=0.050  Sum_probs=113.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH--HHHHH--hcC
Q 038373          133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM--ISGYA--ANG  208 (475)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l--i~~~~--~~g  208 (475)
                      +=|+-+.+.+++++|.+....++..+ +-|...+..=+-+..+.+++++|+.+.+.-.  -..++|..  =.+||  +.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhhHHHHHHHHHcc
Confidence            34566778899999999999998877 5666677777778899999999997665432  22344444  55666  578


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH-HHHhcCCHHHHHH
Q 038373          209 QGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK-VLGSAGHLIEAEE  286 (475)
Q Consensus       209 ~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~-~~~~~g~~~~A~~  286 (475)
                      +.++|+..++     |+.++.. +...--..|-+.|++++|..+|..+.+. +. +|   |...+. .+...+-.-.+. 
T Consensus        94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~-dd---~d~~~r~nl~a~~a~l~~~-  162 (652)
T KOG2376|consen   94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NS-DD---QDEERRANLLAVAAALQVQ-  162 (652)
T ss_pred             cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC-ch---HHHHHHHHHHHHHHhhhHH-
Confidence            8999999887     5555544 5555556788999999999999999732 32 22   222111 122222222222 


Q ss_pred             HHHhCCCCCCHHHHHHHHH---HHHHcCCchHHHHHHHHH
Q 038373          287 FVERMPFEPTVEVWEALRN---FAQIHGDVELEDRAEELL  323 (475)
Q Consensus       287 ~~~~m~~~p~~~t~~~li~---~~~~~g~~~~a~~~~~~l  323 (475)
                      +.+..+..| ..||..+-+   .+...|++..|++.++.-
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            455555555 335555443   234468887776665544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.40  E-value=0.061  Score=38.43  Aligned_cols=51  Identities=20%  Similarity=0.199  Sum_probs=24.4

Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .|.+.|++++|.+.|++..+  | +...|..+-..+...|++++|..+|++..+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555555554442  2 233444455555555555555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.33  E-value=0.12  Score=43.80  Aligned_cols=67  Identities=22%  Similarity=0.372  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKET  231 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t  231 (475)
                      +...++..+...|+.++|.++.+....  | |-..|-.+|.+|...|+..+|+++|+++..     -|+.|+..|
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            445556666666777777777666553  3 455677777777777777777776666532     366665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.17  E-value=0.36  Score=41.21  Aligned_cols=84  Identities=14%  Similarity=-0.004  Sum_probs=47.3

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      -+.+.|++++|..+|+-.....|.... |-.|--+|-..|++++|...|....... .-|...+--+-.+|.+.|+.+.|
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            455666666666666654443344443 3333334444566666666666666555 34555555555666666666666


Q ss_pred             HHHHHh
Q 038373          183 RKVFDQ  188 (475)
Q Consensus       183 ~~~f~~  188 (475)
                      ++-|+.
T Consensus       123 ~~aF~~  128 (157)
T PRK15363        123 IKALKA  128 (157)
T ss_pred             HHHHHH
Confidence            666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.08  E-value=1.1  Score=48.81  Aligned_cols=122  Identities=12%  Similarity=0.089  Sum_probs=56.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHH--HHH
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN---LSSWHLMIS--GYA  205 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~---~~tyn~li~--~~~  205 (475)
                      |..|-..|+..-+...|.+.|+...+.. ..|....-++.+.|++..+++.|..+.-...+++   ...||-+-.  .|.
T Consensus       495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  495 FAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            4555555555455555666665555443 3445555566666666666666666532222211   111221111  133


Q ss_pred             hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373          206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      +.++..+|+.-|+.-.+.  .| |...|..+..+|-..|++..|.++|...
T Consensus       574 ea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             CccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            344444444444443332  22 3334445555555555555555555444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.02  E-value=0.66  Score=37.93  Aligned_cols=83  Identities=7%  Similarity=-0.032  Sum_probs=40.9

Q ss_pred             HhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCC
Q 038373          138 CGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQ  209 (475)
Q Consensus       138 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~  209 (475)
                      +-..|+.++|..+|+.....|...+  ...+-.+-..|...|++++|..+|++...  |+    ......+--++...|+
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence            3345666666666666666665433  12233334455555666666666654431  22    1111112224455566


Q ss_pred             hHHHHHHHHHH
Q 038373          210 GADGLMLFEQM  220 (475)
Q Consensus       210 ~~~A~~l~~~M  220 (475)
                      .++|++.+-+.
T Consensus        91 ~~eAl~~~l~~  101 (120)
T PF12688_consen   91 PKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHHHHH
Confidence            66666655443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.97  E-value=1.5  Score=36.70  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      ..+|..+.+.+.......+++.+.+.| ..+...+|.||..|++.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            345555555566666666666665555 24555666666666654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.90  E-value=3.3  Score=40.84  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccC---CHHH-HH---HHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRKR---NLSS-WH---LMISGYAA---NGQGADGLMLFEQMRKTGPHPDKETFLVVFA  237 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~~---~~~t-yn---~li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~  237 (475)
                      .|+-.|-...+++...++.+.|+..   ++.. -+   -..-++-+   .|+.++|++++..+....-.++.-||..+-.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444688889999999999999854   2221 11   22334455   7899999999999777666778888887776


Q ss_pred             HHHc---------cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HhC----C---CC
Q 038373          238 ACAS---------AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH-LI---EAEEFV---ERM----P---FE  294 (475)
Q Consensus       238 ~~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~-~~---~A~~~~---~~m----~---~~  294 (475)
                      .|-.         ...+++|...|.+--   .+.||.++--.+...+--.|. .+   +..++-   ..+    |   -.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            6532         223556666655332   344554332222333333443 22   222322   111    1   12


Q ss_pred             CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          295 PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       295 p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .|-=-+.+++.++.-.|+.+.|.++.+.+..+.|...
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            3334456788888899999999999999888765543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.86  E-value=1  Score=47.91  Aligned_cols=53  Identities=9%  Similarity=0.135  Sum_probs=41.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          232 FLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       232 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |-++++..|-.|++++|.++-++-.       |....-.|-.+|-..|++.+|..+|.+.
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4456666778899999998877543       4455667889999999999999999875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=3.4  Score=38.12  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             cCChHHHHHHHHhccc------CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH
Q 038373          108 EGKVREAIEYMGQDAS------ASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCNT  179 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~------~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~~  179 (475)
                      ..+.++.++++.++..      .|++..+ |--++-+....|+.+.|...++.+...-  |...-.-.|=.+ +--.|+.
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            4567888888876432      4577766 6667777778899999999999987653  433322223222 2335899


Q ss_pred             HHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          180 RLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       180 ~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ++|.++++...+  | |.++|--=|...-..|+.-+|++-+.+-.+. +.-|...|--+-..|...|+++.|.-.++++.
T Consensus       103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            999999999875  3 6777776666777788888999888887765 66799999999999999999999999999998


Q ss_pred             hhCCCcCCHHH-HHHHHHHHHhcC---CHHHHHHHHHhC
Q 038373          257 NDYGIVPGIEH-YIAIIKVLGSAG---HLIEAEEFVERM  291 (475)
Q Consensus       257 ~~~g~~p~~~~-y~~li~~~~~~g---~~~~A~~~~~~m  291 (475)
                         =+.|-... +-.+-+.+--.|   +++-|.++|.+-
T Consensus       182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               34564333 334444443333   466788888776

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.67  E-value=0.13  Score=38.19  Aligned_cols=55  Identities=13%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc---------CC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK---------RN-LSSWHLMISGYAANGQGADGLMLFEQ  219 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---------~~-~~tyn~li~~~~~~g~~~~A~~l~~~  219 (475)
                      +|+.+-..|.+.|++++|...|++..+         ++ ..+|+.|-..|...|++++|++.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444455555544444443321         11 22444444444445555555444443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=94.59  E-value=0.12  Score=36.92  Aligned_cols=54  Identities=19%  Similarity=0.269  Sum_probs=35.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          201 ISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ...+.+.|++++|.+.|++..+..  | +...+..+-..+...|++++|..+|+...
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345667777777777777777654  4 34456666666777777777777777765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.57  E-value=0.46  Score=44.59  Aligned_cols=94  Identities=12%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHH
Q 038373          138 CGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGL  214 (475)
Q Consensus       138 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~  214 (475)
                      ..+.+++++|...|.+.++.. .-|.+-|.-=-.+|++.|..+.|.+=-+.-..-   -..+|..|-.+|...|++++|+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            355677778888887777654 445666666677788888777777665544432   2347777777888888888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHH
Q 038373          215 MLFEQMRKTGPHPDKETFLV  234 (475)
Q Consensus       215 ~l~~~M~~~g~~pd~~t~~~  234 (475)
                      +-|++-++  +.|+..+|-.
T Consensus       170 ~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  170 EAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHHhhhc--cCCCcHHHHH
Confidence            87777665  6777766644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.54  E-value=0.83  Score=47.19  Aligned_cols=218  Identities=13%  Similarity=0.108  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHH---------HhcccCCCCHHHHHHHHHHHhccCCHHHHH--HHHHHHHHcCCCC
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYM---------GQDASASAGYDVFSSLLDSCGNLKSIEMGK--RVHELLRTSAFVK  161 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~---------~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~~~~m~~~g~~p  161 (475)
                      +-.+.+.+-+-.|..+|.+++|.++-         +.......+...|++.=++|.+.+++..-.  .-+++|+++|-.|
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P  633 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP  633 (1081)
T ss_pred             cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence            44455556666788889998887752         111111155666888888888887765433  3345777788778


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHH-------------hcccCC--------------------HHHH--H-----HHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFD-------------QLRKRN--------------------LSSW--H-----LMI  201 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~-------------~m~~~~--------------------~~ty--n-----~li  201 (475)
                      +......   .++-.|++.+|-++|.             .|+--|                    -..|  +     +-.
T Consensus       634 ~~iLlA~---~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA  710 (1081)
T KOG1538|consen  634 NDLLLAD---VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA  710 (1081)
T ss_pred             hHHHHHH---HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence            7654332   2333344444444444             332100                    0011  1     111


Q ss_pred             HHHHhcCChHHHHHHHHH-----HH-HcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHH
Q 038373          202 SGYAANGQGADGLMLFEQ-----MR-KTGPHP---DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAII  272 (475)
Q Consensus       202 ~~~~~~g~~~~A~~l~~~-----M~-~~g~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li  272 (475)
                      ..+...|+.++|..+.-+     |. +-+-+.   +..+.-.+-.-+-+...+..|.++|..|-.          ...++
T Consensus       711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiV  780 (1081)
T KOG1538|consen  711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLV  780 (1081)
T ss_pred             HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHh
Confidence            223334555555444321     11 111111   223343444444455556666677766642          25788


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCCCHHH-----------HHHHHHHHHHcCCchHHHHHHHHH
Q 038373          273 KVLGSAGHLIEAEEFVERM-PFEPTVEV-----------WEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~m-~~~p~~~t-----------~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      ++....|++.+|..+-++. ...||+..           |.---.+|.+.|+..+|.++++.+
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence            9999999999999999998 45566532           222335788888885555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.50  E-value=0.18  Score=42.81  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRT-----SAFVKDVEL  165 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~  165 (475)
                      ...++..+...|++++|+.+.+...... -|...|-.+|.++...|+...|.++|+.+.+     .|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555666777777777776655433 3455677777777777777777777766643     377776554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.38  E-value=3.3  Score=36.36  Aligned_cols=122  Identities=17%  Similarity=0.122  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH
Q 038373          160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKT---GPHPDKETF  232 (475)
Q Consensus       160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t~  232 (475)
                      .|++.---.|-++..+.|+..+|...|++-..    .|....-.+-.+....+++.+|...++.+-+.   +-.||.  .
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence            45555555556666666666666666665432    24444444555555566666666666655543   223332  2


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373          233 LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE  286 (475)
Q Consensus       233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~  286 (475)
                      ..+-..+...|+..+|+.-|+...   ..-|+...-.-.-.++.+.|+.++|..
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence            333455556666666666666665   223333222222234566666655543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.24  E-value=0.99  Score=44.77  Aligned_cols=141  Identities=18%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF-LVVF  236 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~li  236 (475)
                      ..+|..+|+.--|..-++.|+.+|-+..+     +++..|+++|.-+|. |+..-|..+|+-=..  --||.-.| +-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence            45677777777777777777777776653     466677777776664 556667777754222  13444444 3455


Q ss_pred             HHHHccCCHHHHHHHHHHHhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 038373          237 AACASAEAVKEGFLYFEIMKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQ  308 (475)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~  308 (475)
                      .-+...++-+.|..+|+.-..  .+.-+  ...|..+|+-=.+-|++..|..+=++| ..-|...+-....+-|.
T Consensus       474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence            566677777888888875442  22223  457888888888888888777766666 22344444444444444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.94  E-value=0.92  Score=42.74  Aligned_cols=94  Identities=13%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK----ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIA  270 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~  270 (475)
                      .|+..+.-+.+.|++++|...|+.+...  .|+.    ..+-.+-..+...|++++|...|..+.+++.-.|. ...+-.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4555554445567777777777776653  2332    24445556666677777777777776643222111 112223


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 038373          271 IIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +...|.+.|+.++|.++|++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            344455667777777666655

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.87  E-value=4.6  Score=42.83  Aligned_cols=164  Identities=15%  Similarity=0.240  Sum_probs=96.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                      ..+.-|..+|-.|.-+..++|+++.+-+.|++...   .-...|+.+-..|...|.-..|+.++++-....-.|+..+--
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            34556777888888888888888888888876542   233467777778888888778888777654433235443333


Q ss_pred             HHHHHHH--ccCCHHHHHHHHHHHh--------------------------------------------------hhCCC
Q 038373          234 VVFAACA--SAEAVKEGFLYFEIMK--------------------------------------------------NDYGI  261 (475)
Q Consensus       234 ~li~~~~--~~g~~~~a~~~~~~m~--------------------------------------------------~~~g~  261 (475)
                      .++...|  +.+.++++.++-....                                                  +.-+-
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3332222  2344444444333332                                                  22234


Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373          262 VPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       262 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  322 (475)
                      .|++..|-++=  |+-.++++.|.+...+.   +-.-+...|.-|.-.+.-.+++..|+.+.+.
T Consensus       477 dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  477 DPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             CchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            45555554443  55666777777766655   2234667777766666666676666555443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.85  E-value=6.8  Score=39.16  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH-H
Q 038373          192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY-I  269 (475)
Q Consensus       192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y-~  269 (475)
                      +=...|...|+.-.+..-.+.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+-=...   -||...| +
T Consensus       395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~  470 (660)
T COG5107         395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKE  470 (660)
T ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHH
Confidence            345688899998888887999999999999999 78899999999998875 7778889998764323   2454444 5


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM--PFEPT--VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ..++-+.+-++-+.|..+|+.-  .+..+  ...|..+|..-.+.|++..+....+.+.+.-|...
T Consensus       471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen  536 (660)
T COG5107         471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN  536 (660)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence            6778889999999999999955  22333  67899999999999999888777788888777664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.73  E-value=2  Score=46.80  Aligned_cols=172  Identities=11%  Similarity=0.054  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373          144 IEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQ  219 (475)
Q Consensus       144 ~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~  219 (475)
                      ...+...|-...+.  .++ ...|..|-..|+..-+...|.+.|+..-+   .|...|-.+...|++...+++|+.+.-.
T Consensus       474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            44444444444333  222 45788899999988899999999987654   4677899999999999999999998322


Q ss_pred             HHHcCCCC-CHHHHHHHHH--HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038373          220 MRKTGPHP-DKETFLVVFA--ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE  294 (475)
Q Consensus       220 M~~~g~~p-d~~t~~~li~--~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~  294 (475)
                      --+  ..| -...+|-+-.  .+-+.++...+..-|+...   ...| |...|..|..+|.++|+..-|.++|.+. -++
T Consensus       552 ~~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  552 AAQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             Hhh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            211  111 1122232222  3456677777777777665   4556 7888999999999999999999999988 445


Q ss_pred             CCHHHHHHH-HH-HHHHcCCchHHHHHHHHH
Q 038373          295 PTVEVWEAL-RN-FAQIHGDVELEDRAEELL  323 (475)
Q Consensus       295 p~~~t~~~l-i~-~~~~~g~~~~a~~~~~~l  323 (475)
                      |+. +|... +. .-|..|..+++..+.+++
T Consensus       627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  627 PLS-KYGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            543 22222 11 234567776665555444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.62  E-value=0.2  Score=37.19  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKT--GPH---PD-KETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~---pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .+|+.+-..|...|++++|+..|++..+-  -..   |+ ..+++.+-..+...|+.++|.+++++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888888888888888888876542  111   22 3466666677777777777777776544

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.52  E-value=6.4  Score=36.62  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=24.0

Q ss_pred             HHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          273 KVLGSAGHLIEAEEFVERM-----PFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~m-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      .-|-+.|...-|..=|+.+     +........-.|+.+|...|..++|..+...+
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3455555555444444444     11122233344455565566665555555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=2  Score=39.71  Aligned_cols=139  Identities=12%  Similarity=-0.012  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE----  171 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~----  171 (475)
                      .+.++..+--.|.+.-.+.++++.....  -++.-...|.+.-.+.|+.+.|...|+...+..-+.|-.+++.++.    
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3566666666677777777777655433  3445567777777888999999999998876544566666666654    


Q ss_pred             -HHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373          172 -MYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA  238 (475)
Q Consensus       172 -~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~  238 (475)
                       .|.-..++.+|.+.|+++...   |.+.-|.=.-+..-.|+..+|++.+..|+..  .|...+-++++--
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n  328 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN  328 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence             344567888999999887753   5666665444555578899999999999874  5665555554433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=93.42  E-value=0.34  Score=34.85  Aligned_cols=62  Identities=18%  Similarity=0.088  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLK-SIEMGKRVHELLRT  156 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~m~~  156 (475)
                      ...|..+-..+.+.|++++|+..|.+.....|+. ..|..+-.++.+.| ++++|.+.++...+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3455555556666666666666666544433433 23455555555555 46666665555443

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=93.37  E-value=0.4  Score=34.49  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG-QGADGLMLFEQMRK  222 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g-~~~~A~~l~~~M~~  222 (475)
                      ..+|..+-..|.+.|++++|...|++..+  | +...|..+-.+|.+.| ++++|++.|++-.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            45566666677777777777777766542  3 4456777777777777 57777777766543

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.34  E-value=0.81  Score=45.81  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNL----SSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~----~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      ..+...++.+-.+|.+.|++++|...|++-.  +||-    .+|..+-.+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4578899999999999999999999999854  4553    46999999999999999999999998875

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.32  E-value=4.2  Score=33.96  Aligned_cols=122  Identities=15%  Similarity=0.161  Sum_probs=70.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373          167 NKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE  243 (475)
Q Consensus       167 ~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g  243 (475)
                      ..+|..+.+.+.......+++.+...   +...+|.+|..|++.. ..+.++.++.      ..+.+....+++.|.+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            45566666666677777777665432   3446777777777653 3334444432      233444455667777777


Q ss_pred             CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373          244 AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA-GHLIEAEEFVERMPFEPTVEVWEALRNFAQ  308 (475)
Q Consensus       244 ~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~t~~~li~~~~  308 (475)
                      .++++..++..+. .         |...++.+.+. ++++.|.+++.+-   .+...|..++..+.
T Consensus        84 l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l  136 (140)
T smart00299       84 LYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL  136 (140)
T ss_pred             cHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence            7777777776553 1         22333334444 6777777777763   25566776666554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.01  E-value=1.2  Score=42.08  Aligned_cols=94  Identities=11%  Similarity=-0.026  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTSA--FVKDVELNNKL  169 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~L  169 (475)
                      ..|+..+.-+.+.|++++|...|+.....-|+.    ..+-.+-.++...|++++|...|..+.+.-  -......+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            345555554566788888888887766544543    244455556666677777777666665431  00111222223


Q ss_pred             HHHHHHcCCHHHHHHHHHhc
Q 038373          170 IEMYGKCCNTRLARKVFDQL  189 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m  189 (475)
                      ...|.+.|+.++|.++|++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            33444555555555555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.82  E-value=6.3  Score=37.84  Aligned_cols=65  Identities=14%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHhhhCCC--cCCHHHHHHHHHH
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVFAACAS--AE----AVKEGFLYFEIMKNDYGI--VPGIEHYIAIIKV  274 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~~g~--~p~~~~y~~li~~  274 (475)
                      +++.+.+++.|.+.|++-+..+|.+..-....  ..    .+.+|..+|+.|++++.+  .++...+.+|+.+
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~  150 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM  150 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence            45667888999999999998888763333222  22    256788999999977665  3455667777654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.81  E-value=6.1  Score=40.71  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=89.6

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHH----cCCHHHHHHHHHhccc--CCHHHHHHHH
Q 038373          134 LLDSCGNLKSIEMGKRVHELLRTS-AFVK-----DVELNNKLIEMYGK----CCNTRLARKVFDQLRK--RNLSSWHLMI  201 (475)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~m~~~-g~~p-----~~~~~~~Li~~~~k----~g~~~~A~~~f~~m~~--~~~~tyn~li  201 (475)
                      ++...+=.||-+.+.+.+.+-.+. |+.-     -..+|+..+..++-    ...++.|.++++.+.+  |+-.-|.-.-
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~  273 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE  273 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            344444446666666666555442 2221     12345555554443    3467777777777765  6655554333


Q ss_pred             H-HHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373          202 S-GYAANGQGADGLMLFEQMRKTG---PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS  277 (475)
Q Consensus       202 ~-~~~~~g~~~~A~~l~~~M~~~g---~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~  277 (475)
                      . -+...|++++|++.|++.....   -+.....|=-+...+.-.++|++|.+.|..+.+...+.+..++|-.- -.|..
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a-~c~~~  352 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA-ACLLM  352 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHh
Confidence            2 2445677788887777654311   11123344455556677778888888888887655554444444322 23455


Q ss_pred             cCCH-------HHHHHHHHhC
Q 038373          278 AGHL-------IEAEEFVERM  291 (475)
Q Consensus       278 ~g~~-------~~A~~~~~~m  291 (475)
                      .|+.       ++|.++|.+.
T Consensus       353 l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHH
Confidence            6666       7888888877

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=92.51  E-value=0.81  Score=33.24  Aligned_cols=52  Identities=17%  Similarity=0.164  Sum_probs=21.8

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      |.+.+++++|+++++.+...+.. +...+...-..+.+.|++++|.+.++...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44444444444444444442111 22233333344444444444444444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.32  E-value=5.4  Score=41.10  Aligned_cols=164  Identities=16%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH---------HHHHHHHHHHHhc----CC
Q 038373          144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNL---------SSWHLMISGYAAN----GQ  209 (475)
Q Consensus       144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~---------~tyn~li~~~~~~----g~  209 (475)
                      +.-+.-+|..+... ++|   ....++...+=.|+-+.+.+++.+-.+ .|+         ..|+.++..++..    ..
T Consensus       173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~  248 (468)
T PF10300_consen  173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP  248 (468)
T ss_pred             HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence            44556667776654 233   456788888888999999988876543 222         3788888887765    45


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhh-hCCCc-CCHHHHHHHHHHHHhcCCHHHHHH
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVF-AACASAEAVKEGFLYFEIMKN-DYGIV-PGIEHYIAIIKVLGSAGHLIEAEE  286 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li-~~~~~~g~~~~a~~~~~~m~~-~~g~~-p~~~~y~~li~~~~~~g~~~~A~~  286 (475)
                      .+.|.++++++...  -|+..-|...- +.+...|++++|.+.|+.... +.... .....|--+.-.+.-.+++++|.+
T Consensus       249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            68899999999874  68888776544 345678999999999996542 11211 123344455566888999999999


Q ss_pred             HHHhC-C-CCCCHHHHHHHHHHH-HHcCCc
Q 038373          287 FVERM-P-FEPTVEVWEALRNFA-QIHGDV  313 (475)
Q Consensus       287 ~~~~m-~-~~p~~~t~~~li~~~-~~~g~~  313 (475)
                      .|.++ . -.....+|.-+..+| ...|+.
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            99999 2 234455555555433 335666

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=92.27  E-value=0.75  Score=33.40  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      ..|.+.+++++|.++++.+.+  | +...|...-..|.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            457777788888888777653  3 5556777777788888888888888877764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.90  E-value=2.1  Score=40.37  Aligned_cols=110  Identities=15%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHH
Q 038373          193 NLSSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYI  269 (475)
Q Consensus       193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~  269 (475)
                      |...|--|-..|...|+++.|..-|..-.+ .|-.|+.. -|...+-.-....+-.++.++|+++.   ..+|+ +..-.
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~iral~  231 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRALS  231 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHHHH
Confidence            677888888889999999888888887765 34334333 22222322233344567888888887   34553 44455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRN  305 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~  305 (475)
                      -|--.+...|++.+|...|+.| ..-|....|..+|.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie  268 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            5566788888888888888888 44566666666664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.79  E-value=18  Score=38.58  Aligned_cols=103  Identities=18%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHH
Q 038373          197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLG  276 (475)
Q Consensus       197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~  276 (475)
                      -+--|.-+..-|+..+|.++-.+.+    -||..-|--=+.+++..+++++-+++-+.++.       ..-|--.+..+.
T Consensus       687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~  755 (829)
T KOG2280|consen  687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACL  755 (829)
T ss_pred             HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHH
Confidence            3444555666777777777776653    57888888888899999999887777766652       344667788899


Q ss_pred             hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 038373          277 SAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       277 ~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a  316 (475)
                      +.|+.+||.+++.+.+-.+      -...+|.+.|++.+|
T Consensus       756 ~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA  789 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA  789 (829)
T ss_pred             hcccHHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence            9999999999999884222      456778888888544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.62  E-value=15  Score=36.21  Aligned_cols=215  Identities=16%  Similarity=0.084  Sum_probs=111.4

Q ss_pred             HcCChHHHHHHHHhcccCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          107 KEGKVREAIEYMGQDASASAGYDVF----SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       107 ~~g~~~~A~~l~~~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      -.|++++|.+-|+.|..   |+.|-    -.|.-.--+.|+-+.|.+.-+..-+.- .-=.....+++...|..|+++.|
T Consensus       132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A  207 (531)
T COG3898         132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA  207 (531)
T ss_pred             hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence            35777777777777765   33332    222222234566666666655543322 11234566777777777777777


Q ss_pred             HHHHHhcc-----cCCHH--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHH
Q 038373          183 RKVFDQLR-----KRNLS--SWHLMISGYAA---NGQGADGLMLFEQMRKTGPHPDKET-FLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       183 ~~~f~~m~-----~~~~~--tyn~li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~t-~~~li~~~~~~g~~~~a~~~  251 (475)
                      .++.+.-+     ++|+.  .--.|+.+-+.   .-+...|...-.+  ...+.||-+- -..--.++.+.|++.++-.+
T Consensus       208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~i  285 (531)
T COG3898         208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKI  285 (531)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence            77777544     33433  22233332221   1223333332222  2235555442 22334567777888888888


Q ss_pred             HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH--HH--HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE--AE--EFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~--A~--~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      ++.+. +..--|+.    .++..+.+.|+--.  ..  +-+..|. ..|..+--++..+....|++..|....+....+.
T Consensus       286 lE~aW-K~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~  359 (531)
T COG3898         286 LETAW-KAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA  359 (531)
T ss_pred             HHHHH-hcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence            87777 32333442    23333556665321  11  1233343 2344555555566666777776666666666666


Q ss_pred             CCChhh
Q 038373          328 PSKAIV  333 (475)
Q Consensus       328 ~~~~~~  333 (475)
                      |....+
T Consensus       360 pres~~  365 (531)
T COG3898         360 PRESAY  365 (531)
T ss_pred             chhhHH
Confidence            665544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.15  E-value=17  Score=35.89  Aligned_cols=227  Identities=16%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             HHHHHHHHH--HcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Q 038373           98 LDVNLLSLC--KEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCG--NLKSIEMGKRVHELLRTSAFVKDVEL--NNKLI  170 (475)
Q Consensus        98 ~n~li~~~~--~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li  170 (475)
                      |.+|-.++.  -.|+-..|.++-.+..+ ..-|......||.+-.  -.|+.+.|.+-|+.|...   |....  .-.|.
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy  161 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY  161 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence            344444433  35566677666554321 2245555656666543  348889999999888642   22211  12222


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHH--HHHHHHHHHc---
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--RNL-SSWHLMISGYAANGQGADGLMLFEQMRKT-GPHPDKET--FLVVFAACAS---  241 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~t--~~~li~~~~~---  241 (475)
                      -.--+.|..+.|.+.-+.--+  |.. -.|.+.+...|..|+++.|++|++.-+.. -+.+|+.-  =..|+.+-..   
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            223356778888777765543  322 37889999999999999999999887653 45666542  2233333211   


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHH-HH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVPGIEHY-IAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELE-DR  318 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a-~~  318 (475)
                      ..+-..|...-.+-.   .+.||.+-- -.--.+|.+.|++.++-.+++.+ ..+|....|..-+  +.+.|+.-.. .+
T Consensus       242 dadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlk  316 (531)
T COG3898         242 DADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLK  316 (531)
T ss_pred             cCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHH
Confidence            122334444333322   456664322 23346799999999999999999 5567776665443  4566765321 12


Q ss_pred             HHHHHhccCCCChh
Q 038373          319 AEELLGDLDPSKAI  332 (475)
Q Consensus       319 ~~~~l~~~~~~~~~  332 (475)
                      -.+.|..|++++..
T Consensus       317 Ra~~L~slk~nnae  330 (531)
T COG3898         317 RAKKLESLKPNNAE  330 (531)
T ss_pred             HHHHHHhcCccchH
Confidence            24556778877653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.07  E-value=4.9  Score=40.97  Aligned_cols=158  Identities=11%  Similarity=0.031  Sum_probs=106.7

Q ss_pred             HHHcCChHHHHHHHHh--cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          105 LCKEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      ..-.|+++++.++...  ....-| ..-.+.++..+-+.|..+.|.++-..-.            .-.+...++|+++.|
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA  337 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence            4457889998877762  221113 4558889999999999999998865432            234567789999999


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          183 RKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       183 ~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      .++-++..  +...|..|-....+.|+++-|.+.|++..         -|..|+--|.-.|+.+.-.++.+....+ |- 
T Consensus       338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~-~~-  404 (443)
T PF04053_consen  338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER-GD-  404 (443)
T ss_dssp             HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T--
T ss_pred             HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc-cC-
Confidence            99876665  66799999999999999999999998754         2555666677778887777777665533 32 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038373          263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMPF  293 (475)
Q Consensus       263 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~  293 (475)
                           +|.-..++.-.|++++..+++.+-|.
T Consensus       405 -----~n~af~~~~~lgd~~~cv~lL~~~~~  430 (443)
T PF04053_consen  405 -----INIAFQAALLLGDVEECVDLLIETGR  430 (443)
T ss_dssp             -----HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence                 56666667778899988888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.83  E-value=2.4  Score=40.05  Aligned_cols=76  Identities=17%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKETFLV  234 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t~~~  234 (475)
                      ..++..++..+..+|+.+.+...+++.-..   |...|-.||.+|.++|+...|+..|+++..     -|+.|-..+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            456778888888899999988888877643   667899999999999999999998888765     477777776666


Q ss_pred             HHHH
Q 038373          235 VFAA  238 (475)
Q Consensus       235 li~~  238 (475)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5555

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=90.72  E-value=17  Score=35.21  Aligned_cols=192  Identities=10%  Similarity=0.081  Sum_probs=127.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 038373          100 VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLD---SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGK  175 (475)
Q Consensus       100 ~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k  175 (475)
                      .+=..+..+|++.+|+.-|.......|  ..|-++.+   .|...|+-..|..=+...++.  +||-..-..- -..+.|
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence            344456677888888888888777334  44544443   344455555565555555543  5664322211 235778


Q ss_pred             cCCHHHHHHHHHhcccCCH----------------HHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRKRNL----------------SSWH--LMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVF  236 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~~~----------------~tyn--~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li  236 (475)
                      .|.++.|..=|+...+.+.                ..|+  ..+..+.-.|+...|++....+.+  +.| |...|-.--
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Ra  196 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARA  196 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHH
Confidence            9999999999998864221                1232  345566778999999999988887  455 666677778


Q ss_pred             HHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 038373          237 AACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV  299 (475)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t  299 (475)
                      .+|...|+...|..=++... +..-. ++.+.--+-..|-..|+.+.++...++- .+.||-..
T Consensus       197 kc~i~~~e~k~AI~Dlk~as-kLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQAS-KLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             HHHHhcCcHHHHHHHHHHHH-hcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            88999999998877666555 22222 4555556667788899999998887776 67777543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=90.52  E-value=8.9  Score=31.74  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      .+.-+..+...|+-+.-.++.+++.. .-+++......+-.||.+.|+..++.+++.+.-++ |+.
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k  152 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK  152 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence            34455666777777777777777654 23566666777777777778777777777777643 653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.38  E-value=4.3  Score=38.30  Aligned_cols=96  Identities=15%  Similarity=-0.007  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHhccc--C-CHHHHHHH
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC--C-NTRLARKVFDQLRK--R-NLSSWHLM  200 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~--g-~~~~A~~~f~~m~~--~-~~~tyn~l  200 (475)
                      |...|-.|-..|...|+++.|..-|....+.- .++...+..+-.++...  + .-.++..+|+++..  | |+.+-.-|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            34445555555555555555555555554432 23333333333332221  1 23455566665543  2 44455555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc
Q 038373          201 ISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      -.++...|++.+|...|+.|.+.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc
Confidence            55666667777777777666653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=24  Score=36.15  Aligned_cols=220  Identities=11%  Similarity=-0.029  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVF-SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-------  169 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-------  169 (475)
                      .-.+-++.-+..+++.|++-+....... ...+| +..-.++...|...++...-....+.|.+ ...-|+-|       
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence            3445556666777777877777655544 44444 44445677888887777777766666532 22223322       


Q ss_pred             HHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHH
Q 038373          170 IEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET-FLVVFAACASAEAVK  246 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~li~~~~~~g~~~  246 (475)
                      -++|.+.++.+.|...|.+...  ++..    +   ..+....++++.......-  +.|+... .-.=-+.+.+.|++.
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~----~---ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPD----L---LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHH----H---HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHH
Confidence            2255566677777777766431  1100    1   1112223333333332222  2232211 111134566778888


Q ss_pred             HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373          247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE-VWEALRNFAQIHGDVELEDRAEELLG  324 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~l~  324 (475)
                      .|...+.+++.+ . .-|...|..---+|.+.|.+.+|.+=-+.- ...|+.. .|--=-.++.-..+++.|.++++.-.
T Consensus       376 ~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  376 EAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887733 2 225777888888888888887777654443 2233321 11111111222234445555555555


Q ss_pred             ccCCCC
Q 038373          325 DLDPSK  330 (475)
Q Consensus       325 ~~~~~~  330 (475)
                      +..|+.
T Consensus       454 e~dp~~  459 (539)
T KOG0548|consen  454 ELDPSN  459 (539)
T ss_pred             hcCchh
Confidence            555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.16  E-value=7.2  Score=39.02  Aligned_cols=134  Identities=10%  Similarity=0.042  Sum_probs=88.9

Q ss_pred             HHHcCChHHHHHHHHhcccCC---CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 038373          105 LCKEGKVREAIEYMGQDASAS---AG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~---p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~  176 (475)
                      +-+.+++.+|.++|.+.....   |.    .+.-+-+|+||.. .+++.....+.+..+. |-.+-...+-+|+  .-+.
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~   92 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQ   92 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHh
Confidence            447889999999998654322   22    2234677788765 4677777777766553 4333333333332  3467


Q ss_pred             CCHHHHHHHHHhcccC------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHH
Q 038373          177 CNTRLARKVFDQLRKR------------------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP----HPDKETFLV  234 (475)
Q Consensus       177 g~~~~A~~~f~~m~~~------------------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~----~pd~~t~~~  234 (475)
                      +..++|.+.|..-.+.                  |.+-=+..+.++...|++.++..++++|...=+    .-|.-+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            8899998887654321                  223446778888999999999999999887543    378889988


Q ss_pred             HHHHHHc
Q 038373          235 VFAACAS  241 (475)
Q Consensus       235 li~~~~~  241 (475)
                      ++-.+++
T Consensus       173 ~vlmlsr  179 (549)
T PF07079_consen  173 AVLMLSR  179 (549)
T ss_pred             HHHHHhH
Confidence            7766654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=89.06  E-value=19  Score=33.43  Aligned_cols=57  Identities=12%  Similarity=-0.017  Sum_probs=42.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          235 VFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +..-|-+.|.+..|..-++.+.+++.-.| .....-.|+.+|-+.|..++|.++...+
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            34557788999999999999886654433 2345567889999999999998877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.58  E-value=16  Score=31.84  Aligned_cols=217  Identities=18%  Similarity=0.086  Sum_probs=149.0

Q ss_pred             cCChHHHHHHHHhcccCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAG---YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKCCNTRLAR  183 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~g~~~~A~  183 (475)
                      .+....+...+.......+.   ...+......+...+.+..+...+...... ........+..+...+...+....+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35556666666554443343   567778888888889999888888887653 33456667777778888888899999


Q ss_pred             HHHHhccc--C-CHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373          184 KVFDQLRK--R-NLSSWHLMIS-GYAANGQGADGLMLFEQMRKTGPHP----DKETFLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       184 ~~f~~m~~--~-~~~tyn~li~-~~~~~g~~~~A~~l~~~M~~~g~~p----d~~t~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      +.+.....  + +...+..... .+...|++++|...|.+...  ..|    ....+......+...++.+++...+...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            99987764  2 2223333334 78899999999999999855  333    3444555555577888999999999988


Q ss_pred             hhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373          256 KNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDP  328 (475)
Q Consensus       256 ~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~  328 (475)
                      ..  .... ....+..+-..+...|+.++|...+... ...|+ ...+..+...+...|..+.+....+...+..+
T Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            73  2223 3677888888899999999999999888 44454 33444444444466667666655555554433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.35  E-value=4.2  Score=38.68  Aligned_cols=101  Identities=14%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038373          157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNLS-----SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE  230 (475)
Q Consensus       157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~~-----tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~  230 (475)
                      .|....+.+...++..-....+++++...+-..+. |+..     +-.+.|. ++..=++++++.++..=.+.|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence            35555666667777766667788888877766652 2211     1112222 233446789999999889999999999


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKND  258 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~  258 (475)
                      |++.+|+.+.+.+++.+|..+.-+|..+
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999998887776644

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=88.09  E-value=41  Score=36.08  Aligned_cols=130  Identities=15%  Similarity=0.186  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIK  273 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~  273 (475)
                      .|......+.+.+..++|...+.|...  +.| ....|.-.-..+-..|.+++|.+.|....   -+.|| +...++|-.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~  726 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE  726 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence            355556667777777777766666543  333 22334433344556788888888887765   56775 667789999


Q ss_pred             HHHhcCCHHHHHH--HHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          274 VLGSAGHLIEAEE--FVERM-PFE-PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       274 ~~~~~g~~~~A~~--~~~~m-~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      +|.+.|+-.-|.+  ++.++ .+. -+...|-.|-..+.+.|+.+.|-+.++.-.++++..
T Consensus       727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            9999998877777  88877 333 467889999899999999988887777776666544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.62  E-value=14  Score=37.79  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      --.+.++.-+-+.|..+.|+++-.+       +.+   =.....+.|+++.|.++-.+.      .+...|..|-+...+
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D-------~~~---rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~  359 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTD-------PDH---RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR  359 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS--------HHH---HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCC-------hHH---HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence            3478889999999999999988543       222   123345679999998876543      477899999999999


Q ss_pred             cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      .|+++-|++.|.+...     |..|.--|.-.|+.++-.++-+.-...|-      +|....++--.|++++..+++..
T Consensus       360 ~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  360 QGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             TTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998753     66777778888988777777766665552      45555566666777777766653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.48  E-value=1.3  Score=27.26  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQM  220 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M  220 (475)
                      +|+.|-..|.+.|++++|+++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566666677777777777776663

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.42  E-value=9.8  Score=39.76  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH--------
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH--------  267 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--------  267 (475)
                      +.-.+-.-+-+...+.-|-++|..|-..         ..++......++|.+|..+-+..-   .+.||++.        
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAE  816 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhh
Confidence            4333333344555667788888877432         356677788999999998887665   45566532        


Q ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          268 ---YIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       268 ---y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                         |---=.+|-|+|+-.||.++++++
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence               223335788888888888888887

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.95  E-value=7.3  Score=34.27  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCC----HHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPG----IEH  267 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~----~~~  267 (475)
                      .|..+..-|++.|+.++|++.|.++.+....+...  .+-.+|..+...+++..+.........-.  |-.++    ...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44444445555555555555555554443333322  33444444445555555444443332110  11111    233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          268 YIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       268 y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |..|.  +...|++.+|-+.|-+.
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHcc
Confidence            44444  23357788888777766

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.68  E-value=20  Score=31.08  Aligned_cols=199  Identities=18%  Similarity=0.112  Sum_probs=140.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ....+......+...+.+..+...+.....   .......+..........+....+...+.........+ ........
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  136 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA  136 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence            356677788889999999999998876543   22444556677777777788999999999888765433 12222223


Q ss_pred             H-HHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373          171 E-MYGKCCNTRLARKVFDQLRKR------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE  243 (475)
Q Consensus       171 ~-~~~k~g~~~~A~~~f~~m~~~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g  243 (475)
                      . .|...|+++.|...|++...-      ....+......+...++.++|...+.+............+..+-..+...+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            3 789999999999999987432      223444444557788999999999999887432214677888888888899


Q ss_pred             CHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373          244 AVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT  296 (475)
Q Consensus       244 ~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~  296 (475)
                      +++.+...+.....   ..|+ ...+..+...+...|..+++...+.+. ...|+
T Consensus       217 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         217 KYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999998873   3343 334444444455778899999888877 33344

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.68  E-value=13  Score=31.94  Aligned_cols=47  Identities=17%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             HcCCHHHHHHHHHhcc--cCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          175 KCCNTRLARKVFDQLR--KRNL---SSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~--~~~~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      +.++.+++..+++.|.  .|..   .++-..+  +...|++.+|+++|+++.+.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence            4566777777777665  3432   2444333  45667777777777776554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.61  E-value=12  Score=32.99  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRKRN------LSSWHLMISGYAANGQGADGLMLFEQMRK---TGPHPDKETFLV  234 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~------~~tyn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~t~~~  234 (475)
                      ..+..+.+.|++.|++++|.+.|.++.+..      +..+-.+|......|++..+.....+...   .|-.++...-..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            467788889999999999999999988642      23667788888888898888887776654   222222222222


Q ss_pred             HHHHH--HccCCHHHHHHHHHHHhh
Q 038373          235 VFAAC--ASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       235 li~~~--~~~g~~~~a~~~~~~m~~  257 (475)
                      +..|+  ...+++.+|-+.|-....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            22222  246788888888776653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=86.15  E-value=29  Score=32.25  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM--PFEPT---VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m--~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      .+-.-|.+.|....|..-|++|  ..+-.   ....-.|..+|...|..++|+++.+.+..-.|+.
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            3446688889988888888888  21112   2344556789999999999999999998766655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.60  E-value=10  Score=35.32  Aligned_cols=95  Identities=15%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAII  272 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li  272 (475)
                      .|+.-+.. .+.|++.+|...|...++....  -..-.+--|-.++...|++++|..+|..+.++++-.|-. ..+--|-
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            46666654 3456677777777777764311  011233346677777777777777777777655544432 4455666


Q ss_pred             HHHHhcCCHHHHHHHHHhC
Q 038373          273 KVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~m  291 (475)
                      ....+.|+.++|..+|++.
T Consensus       223 ~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         223 VSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHH
Confidence            6677777777777777766

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.45  E-value=6.8  Score=30.72  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373          212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK  273 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~  273 (475)
                      +..+-++.+-...+.|+.....+.+.||.+..++..|.++|+.++.+.|-.  ...|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            445555666667789999999999999999999999999999998765543  337887774

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.41  E-value=8.6  Score=40.83  Aligned_cols=110  Identities=13%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                      +.+--|.-+..-|+..+|.++-.+.+-||-.-|--=+.+++..+++++-+++-+.++.      .+-|.-.+.+|.+.|+
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n  759 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN  759 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence            4444455566789999999999999999999999999999999999988877776642      4556667889999999


Q ss_pred             HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          245 VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      .++|.+++....   |.       .-.+.+|.++|++.+|.++--+
T Consensus       760 ~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  760 KDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence            999999887654   22       2578899999999999876543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=85.32  E-value=7.6  Score=32.64  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=22.1

Q ss_pred             cCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRKR------NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .|++++|.+.|+.+..+      ..-.---|+.+|.+.|++++|...+++..+
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34555555555544421      112333345555555555555555555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.06  E-value=14  Score=36.56  Aligned_cols=85  Identities=9%  Similarity=-0.008  Sum_probs=46.9

Q ss_pred             HHHHHcCCHHHHHHHHHhccc------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      +.|.|.|++..|..-|+....                  .-+.+++.|..+|.+.+++.+|++.-+..++.+ .+|+-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            578899999999988876431                  012245555555556666666555555544432 1233333


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHh
Q 038373          233 LVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       233 ~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ----.+|...|+++.|...|..+.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKAL  318 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHH
Confidence            333344445555555555555554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=84.88  E-value=11  Score=37.83  Aligned_cols=142  Identities=11%  Similarity=0.089  Sum_probs=97.3

Q ss_pred             hccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CHHHHHHHHHHH--HhcCCh
Q 038373          139 GNLKSIEMGKRVHELLRTSAF-VK----DVELNNKLIEMYGKCCNTRLARKVFDQLRKR-NLSSWHLMISGY--AANGQG  210 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~~~tyn~li~~~--~~~g~~  210 (475)
                      -+.+++.++.++|..+-+.-- .|    ..+..+-+|++|.- .+++.....+.+..+. .-..|-.|..+.  -+.|.+
T Consensus        17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence            467899999999998865421 11    13456778888875 4666666666666542 344566666663  467888


Q ss_pred             HHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCCHHHHHHHHH
Q 038373          211 ADGLMLFEQMRKT--GPHP------------DKETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPGIEHYIAIIK  273 (475)
Q Consensus       211 ~~A~~l~~~M~~~--g~~p------------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~~~~y~~li~  273 (475)
                      ++|++.|..-.+.  +-+|            |-+-=+..+..+...|++.+|..+++.|..+   .....++.+||-++-
T Consensus        96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl  175 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL  175 (549)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence            9999888776654  4333            2222356677888999999999999988753   133468889999888


Q ss_pred             HHHhcCCH
Q 038373          274 VLGSAGHL  281 (475)
Q Consensus       274 ~~~~~g~~  281 (475)
                      +|++.=-+
T Consensus       176 mlsrSYfL  183 (549)
T PF07079_consen  176 MLSRSYFL  183 (549)
T ss_pred             HHhHHHHH
Confidence            89886443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.72  E-value=20  Score=30.23  Aligned_cols=89  Identities=12%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             HHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhcc---------cCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 038373          154 LRTSAFVKDV--ELNNKLIEMYGKCCNTRLARKVFDQLR---------KRNLSSWHLMISGYAANGQ-GADGLMLFEQMR  221 (475)
Q Consensus       154 m~~~g~~p~~--~~~~~Li~~~~k~g~~~~A~~~f~~m~---------~~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~  221 (475)
                      |.+.+..++.  ...|++++-...-+++....++++.+.         ..+-.+|++++.+..+..- ---+..+|+-|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            3334444443  234555555555555555555555553         1234478888888765554 234677788888


Q ss_pred             HcCCCCCHHHHHHHHHHHHcc
Q 038373          222 KTGPHPDKETFLVVFAACASA  242 (475)
Q Consensus       222 ~~g~~pd~~t~~~li~~~~~~  242 (475)
                      +.+.+++..-|-.+|.+|.+-
T Consensus       108 ~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHcC
Confidence            777788888888888876553

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.69  E-value=7.2  Score=30.27  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK  273 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~  273 (475)
                      .-++.+-++.+....+.|+.....+.++||.+..++..|.++++.++.+.|.  +...|..+++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            3455666666777788999999999999999999999999999988865443  4556777763

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=84.55  E-value=24  Score=35.93  Aligned_cols=78  Identities=10%  Similarity=0.135  Sum_probs=51.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHH
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP-F-EP--TVEVWEALRNFAQI  309 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~-~p--~~~t~~~li~~~~~  309 (475)
                      -+-.++-+.|+.++|.+.+++|.++....-+......||..|...+...++..++.+-. + -|  -...|++.+--+..
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            35556678889999998888887543322234456678888889999999988888773 1 12  34566665544433


Q ss_pred             cC
Q 038373          310 HG  311 (475)
Q Consensus       310 ~g  311 (475)
                      .|
T Consensus       344 v~  345 (539)
T PF04184_consen  344 VG  345 (539)
T ss_pred             hc
Confidence            33

The molecular function of this protein is uncertain.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.52  E-value=11  Score=35.67  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ++..++..+...|+.+.+.+.++++.... .-|...|-.+|.+|.+.|+...|...|+.+.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44455555555555555555555555432 1245555555555555555555555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.42  E-value=38  Score=32.14  Aligned_cols=192  Identities=14%  Similarity=0.121  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHh----------cccCCCCH-----HHHHHHHHHHhccCCH---HHHHHHHHHHHHc
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQ----------DASASAGY-----DVFSSLLDSCGNLKSI---EMGKRVHELLRTS  157 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~----------~~~~~p~~-----~t~~~ll~~~~~~~~~---~~a~~~~~~m~~~  157 (475)
                      +.||.-...+.+..++++|...+++          +....|+.     .++..+..++-..+..   ++|..+++.+...
T Consensus        37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e  116 (278)
T PF08631_consen   37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE  116 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence            4577666666555488887776653          22233554     2356666677666654   4566666666443


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-C--HHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373          158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-N--LSSWHLMISGY---AANGQGADGLMLFEQMRKTGPHPDKET  231 (475)
Q Consensus       158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~--~~tyn~li~~~---~~~g~~~~A~~l~~~M~~~g~~pd~~t  231 (475)
                      . .-...++--=|..+.+.++.+++.+++.+|... +  ...+..++..+   ... ....|...++++....+.|..-.
T Consensus       117 ~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~  194 (278)
T PF08631_consen  117 Y-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQ  194 (278)
T ss_pred             C-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhH
Confidence            2 222445545566666688899999999888642 2  24555555555   333 34567777777777666665421


Q ss_pred             H-----HHHHHHHHcc------CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH-------HHhcCCHHHHHHHHH
Q 038373          232 F-----LVVFAACASA------EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV-------LGSAGHLIEAEEFVE  289 (475)
Q Consensus       232 ~-----~~li~~~~~~------g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~-------~~~~g~~~~A~~~~~  289 (475)
                      +     .+.+-.....      ..++...++++.+....+...+..+-.++...       +-+.+++++|.+.|+
T Consensus       195 ~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  195 WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE  270 (278)
T ss_pred             HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            1     1111111221      12445555555444333444444444444333       334556666666654

It is also involved in sporulation [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=84.18  E-value=29  Score=30.67  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCCHHHHH
Q 038373          192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPGIEHYI  269 (475)
Q Consensus       192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~~~~y~  269 (475)
                      |.+..---|-.+..+.|+..||...|++-..--+.-|......+-++....++..+|...++.+-+-.  +-.||.  .-
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence            44444456777788888888888888887654445577788888888888888888888888766321  223443  34


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCCchHH
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM-PFEPTV---EVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~---~t~~~li~~~~~~g~~~~a  316 (475)
                      .+-..|...|+.++|+.-|+.. ..-|+.   .-|..++   .+.|+.+++
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L---a~qgr~~ea  212 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML---AKQGRLREA  212 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH---HHhcchhHH
Confidence            5556788888888888888766 333333   3344443   456655443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=83.81  E-value=32  Score=30.83  Aligned_cols=53  Identities=13%  Similarity=-0.002  Sum_probs=24.1

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRT  156 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  156 (475)
                      .+.+.|++.+|.+.|++....-|+    ....-.+..++-+.|+++.|...++...+
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666666665554331111    12233444455555555555555555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=83.71  E-value=45  Score=34.12  Aligned_cols=162  Identities=10%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      .+..|-.+ =+..+...-.++=++.....||..+.-+++ +--....+.++.+++++..+.|= -          .|.+.
T Consensus       171 Aq~IMq~A-WRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-~----------~lg~s  237 (539)
T PF04184_consen  171 AQEIMQKA-WRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-A----------SLGKS  237 (539)
T ss_pred             HHHHHHHH-HhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-H----------hhchh
Confidence            33444433 344555555555555555446654432222 22234568899999998877651 0          11111


Q ss_pred             CCHHHHHHHHHhcccCCH--HHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 038373          177 CNTRLARKVFDQLRKRNL--SSW--HLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       177 g~~~~A~~~f~~m~~~~~--~ty--n~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      ...+..-...+.+..+|.  ..|  --|-.+.-+.|+.+||++.|++|.+.--.- +....-.||.++-..+.+.++..+
T Consensus       238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            111111111122223332  221  224445567799999999999987653221 233667788999999999999998


Q ss_pred             HHHHhhhCCC-cCCHHHHHHHH
Q 038373          252 FEIMKNDYGI-VPGIEHYIAII  272 (475)
Q Consensus       252 ~~~m~~~~g~-~p~~~~y~~li  272 (475)
                      +..-. +... +.-..+|++.+
T Consensus       318 L~kYd-Di~lpkSAti~YTaAL  338 (539)
T PF04184_consen  318 LAKYD-DISLPKSATICYTAAL  338 (539)
T ss_pred             HHHhc-cccCCchHHHHHHHHH
Confidence            88765 2122 22356677644

The molecular function of this protein is uncertain.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.61  E-value=0.3  Score=41.18  Aligned_cols=83  Identities=12%  Similarity=0.092  Sum_probs=43.6

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHH
Q 038373          134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A  213 (475)
                      +|..+-+.+.++...++++.+.+.+-.-+....|.|+..|++.++.++..++++....   .-...++.-|-+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            3455555566666666666666555455566667777777766555555555542221   2233444444555555555


Q ss_pred             HHHHHH
Q 038373          214 LMLFEQ  219 (475)
Q Consensus       214 ~~l~~~  219 (475)
                      .-++.+
T Consensus        90 ~~Ly~~   95 (143)
T PF00637_consen   90 VYLYSK   95 (143)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.97  E-value=22  Score=30.12  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=14.1

Q ss_pred             HcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHhc
Q 038373          175 KCCNTRLARKVFDQLRKRN-LSSWHLMISGYAAN  207 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~~~-~~tyn~li~~~~~~  207 (475)
                      +.|++++|.++|++..+.. ...|..-+.++|-.
T Consensus        56 ~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        56 ARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            3444444444444444332 22344444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK11906 transcriptional regulator; Provisional

Probab=82.93  E-value=56  Score=33.19  Aligned_cols=75  Identities=7%  Similarity=0.088  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 038373          144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLS-SWHLMISGYAANGQGADGLMLFEQ  219 (475)
Q Consensus       144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~-tyn~li~~~~~~g~~~~A~~l~~~  219 (475)
                      ..+|.++-+...+.+ .-|......+-.++.-.|+++.|..+|++-.  .||.. +|-..--..+-+|+.++|.+.+++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344455555555544 4455555555444455555666666665543  23221 222222223335555555555555

>PRK15331 chaperone protein SicA; Provisional

Probab=82.71  E-value=6.3  Score=33.98  Aligned_cols=82  Identities=11%  Similarity=0.048  Sum_probs=43.7

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHH
Q 038373          140 NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLML  216 (475)
Q Consensus       140 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l  216 (475)
                      ..|++++|..+|..+...++ -|..-+..|-.+|-..+++++|...|...-   ..|...+--+-.+|...|+.+.|...
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence            45666666666666655442 223334445555555566666666665321   22333344445556666666666666


Q ss_pred             HHHHHH
Q 038373          217 FEQMRK  222 (475)
Q Consensus       217 ~~~M~~  222 (475)
                      |....+
T Consensus       128 f~~a~~  133 (165)
T PRK15331        128 FELVNE  133 (165)
T ss_pred             HHHHHh
Confidence            665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=82.16  E-value=75  Score=33.92  Aligned_cols=118  Identities=7%  Similarity=-0.049  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCChHHHHHHHHhccc-CC----------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038373           90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDAS-AS----------AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA  158 (475)
Q Consensus        90 ~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g  158 (475)
                      .+.|....|..|...-.+.-.++-|...|-+-.. .|          .+...--+=|.+|  -|.+++|.++|-+|-++.
T Consensus       687 EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD  764 (1189)
T KOG2041|consen  687 EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD  764 (1189)
T ss_pred             hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence            3578888888777766666667777776654221 00          0111111122222  389999999999887654


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC---HHHHHHHHHHHHhcCChHHHHHHHH
Q 038373          159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RN---LSSWHLMISGYAANGQGADGLMLFE  218 (475)
Q Consensus       159 ~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~---~~tyn~li~~~~~~g~~~~A~~l~~  218 (475)
                      +         -|..+.+.|++-...++++.=..  -|   ...|+.+-..++....+++|.+.+.
T Consensus       765 L---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  765 L---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             h---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3         35666777777666666653211  01   1245555555555545555544443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=82.01  E-value=2.8  Score=25.79  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQL  189 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m  189 (475)
                      +|+.|-+.|.+.|++++|.++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4778889999999999999999873

>PHA02875 ankyrin repeat protein; Provisional

Probab=82.01  E-value=14  Score=37.18  Aligned_cols=195  Identities=10%  Similarity=0.007  Sum_probs=99.9

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAGYDV--FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCC  177 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g  177 (475)
                      +..-++.|+.+-+..+++.+..  |+...  ..+.|..++..|+.+    +.+.+.+.|..|+..  ...+.+...++.|
T Consensus         6 L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          6 LCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence            3445677888777777776543  33221  234455556667765    444555667655533  1234566677888


Q ss_pred             CHHHHHHHHHhcccCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHH
Q 038373          178 NTRLARKVFDQLRKRNLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF--LVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       178 ~~~~A~~~f~~m~~~~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~--~~li~~~~~~g~~~~a~~~~  252 (475)
                      +.+.+..+++.-...+..   .-++.+...+..|+.    ++++.+.+.|..|+....  .+.+...+..|+.+-+..++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI  155 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            888888887754321111   112233334455654    455555666776654321  23444555677776555444


Q ss_pred             HHHhhhCCCcCCH---HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCc
Q 038373          253 EIMKNDYGIVPGI---EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEV---WEALRNFAQIHGDV  313 (475)
Q Consensus       253 ~~m~~~~g~~p~~---~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t---~~~li~~~~~~g~~  313 (475)
                      +     .|..++.   .-+ +.+...+..|+.+-+..+++ .|..++...   ..+++...+..|+.
T Consensus       156 ~-----~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~  215 (413)
T PHA02875        156 D-----HKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKI  215 (413)
T ss_pred             h-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCH
Confidence            3     2443332   222 33334455677655444443 443444322   12445544556664

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.99  E-value=5.3  Score=38.01  Aligned_cols=97  Identities=9%  Similarity=-0.029  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-----AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN  167 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  167 (475)
                      ...++-..++..-....+++++...+-+.....     |+. +-.+++.-|-+ -+.+++..+...=++.|+-||-++++
T Consensus        62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c  139 (418)
T KOG4570|consen   62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC  139 (418)
T ss_pred             cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence            344455556666666777888887654332211     221 22233333333 36778888888888899999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccc
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRK  191 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~  191 (475)
                      .||+.+.+.++..+|.++.-+|..
T Consensus       140 ~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  140 LLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999988777654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=81.53  E-value=14  Score=37.68  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=62.2

Q ss_pred             HHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRL  181 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~  181 (475)
                      +.+..|+++.|+.+|-+..... +|.+-|+.=..++++.|++++|.+=-..-++  +.|+ ..-|+-+-.++.-.|++++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence            4456777888888776644433 4666677777777777777776654444333  3454 3356666666666677777


Q ss_pred             HHHHHHhccc--C-CHHHHHHHHHHH
Q 038373          182 ARKVFDQLRK--R-NLSSWHLMISGY  204 (475)
Q Consensus       182 A~~~f~~m~~--~-~~~tyn~li~~~  204 (475)
                      |..-|.+=.+  | |-..++-+..++
T Consensus        89 A~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   89 AILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            7777776543  2 455666666666

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=81.09  E-value=2.4  Score=27.47  Aligned_cols=33  Identities=9%  Similarity=-0.021  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYD  129 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~  129 (475)
                      .|..+-..|.+.|++++|.++|++.....|+..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            456677778888888888888887766556543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=80.93  E-value=3.6  Score=26.58  Aligned_cols=28  Identities=18%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      +|..+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566677777777777777777777764

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=80.91  E-value=23  Score=29.43  Aligned_cols=61  Identities=13%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH  226 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~  226 (475)
                      .+.-++.+.+.|+-|.-.+++.++.   +++....-.+-.+|.+.|+..+|-+++++.-+.|++
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3444555666666666666666553   344444455566666666666666666666666654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.84  E-value=4.1  Score=25.46  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMR  221 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~  221 (475)
                      .+++.|-..|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            356666666677777777776666654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=80.60  E-value=18  Score=29.95  Aligned_cols=86  Identities=15%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHcCCH
Q 038373          104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI---EMYGKCCNT  179 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li---~~~~k~g~~  179 (475)
                      +++..|+.+.|++.|.+....-| ....||.--.++--.|+.++|..=+++..+..-...-..+.+.+   ..|-..|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            57889999999999988655433 55678888888888889988888887776642122333333332   235556777


Q ss_pred             HHHHHHHHhc
Q 038373          180 RLARKVFDQL  189 (475)
Q Consensus       180 ~~A~~~f~~m  189 (475)
                      +.|+.=|+..
T Consensus       132 d~AR~DFe~A  141 (175)
T KOG4555|consen  132 DAARADFEAA  141 (175)
T ss_pred             HHHHHhHHHH
Confidence            7777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 48.3 bits (113), Expect = 5e-06
 Identities = 38/378 (10%), Positives = 102/378 (26%), Gaps = 33/378 (8%)

Query: 113 EAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172
             +E   + A  S   +  + LL       S+++ +        +      +      + 
Sbjct: 77  GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136

Query: 173 YGKCCNTRLARKVFDQLRKR-------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225
                   LA  +      +        L  ++ ++ G+A  G   + + +   ++  G 
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196

Query: 226 HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE 285
            PD  ++          +                     IE  +  +   G     +   
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAG----------------TIERCLEQMSQEGLKLQALFTA 240

Query: 286 EFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQS 345
             +        ++    ++    +   +       +LL D+      V    L    K  
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300

Query: 346 ATNMLE----EKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE 401
                +    E        S +      +++K    +  +       + +   + E    
Sbjct: 301 QCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR-KTLKTLRDQWEKALCRALRETKNR 359

Query: 402 KALQYHSERLAIAYGLISTPPR----MPLRIIKNLRICGDCHNAIKI-MSKIVGRELIVR 456
              + +  R ++   L     R    M L++++ L   G+    +   +S       +V+
Sbjct: 360 LEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQ 419

Query: 457 DNKRFHHFRDGKCSCGDY 474
             +     +  +     Y
Sbjct: 420 RQRVSGQVQALQNHYRKY 437

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 56/440 (12%), Positives = 135/440 (30%), Gaps = 119/440 (27%)

Query: 59  TRFVKKQRNPSSNEQEPKTGTGHSQNTNDPL------RGNAQLESLDVNLLSLCKEGKVR 112
           +    +QR PS   +          N N         R       L   LL L     V 
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNV- 153

Query: 113 EAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL--I 170
             I+ +        G           G  K+        ++  +       +++ K+  +
Sbjct: 154 -LIDGVL-------G----------SG--KTW----VALDVCLSYKVQC--KMDFKIFWL 187

Query: 171 EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLML-----FEQMRKTGP 225
            +   C +      V + L+   L   + +   + +    +  + L       ++R+   
Sbjct: 188 NL-KNCNSPET---VLEMLQ--KL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 226 HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG---IVPGIEHYIAIIKVLGSAGHLI 282
               E  L+V     +A+A       F     +     ++     +  +   L +A    
Sbjct: 240 SKPYENCLLVLLNVQNAKAWN----AF-----NLSCKILL--TTRFKQVTDFLSAATTTH 288

Query: 283 EAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRK 342
            + +    M   P     E      +      L+ R ++L     P +  +   P     
Sbjct: 289 ISLDH-HSMTLTPD----EVKSLLLKY-----LDCRPQDL-----PREV-LTTNPR---- 328

Query: 343 KQSATNMLEEKNRVSDYRST-DLYRG-EYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK 400
                +++ E   + D  +T D ++    +K+      + E+           ++ E A+
Sbjct: 329 ---RLSIIAE--SIRDGLATWDNWKHVNCDKLT----TIIESSL---------NVLEPAE 370

Query: 401 EKALQYHSERLAIAYGLISTPP--RMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDN 458
            + + +  +RL++       PP   +P  ++  +       + + +++K+    L+ +  
Sbjct: 371 YRKM-F--DRLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 459 KRF----HH-FRDGKCSCGD 473
           K         + + K    +
Sbjct: 422 KESTISIPSIYLELKVKLEN 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.93
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.88
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.76
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.71
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.7
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.68
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.61
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.58
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.58
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.51
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.44
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.43
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.36
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.3
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.29
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.1
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.08
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.0
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.88
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.83
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.82
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.73
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.48
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.44
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.43
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.42
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.4
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.35
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.32
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.3
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.27
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.22
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.2
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.19
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.18
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.15
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.11
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.06
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.03
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.02
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.99
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.98
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.95
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.94
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.94
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.92
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.73
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.69
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.62
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.55
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.5
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.34
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.25
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.17
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.1
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.84
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.52
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.51
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.45
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.73
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.35
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.85
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.41
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	91.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.65
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	87.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	86.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.03
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	85.71
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	85.03
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	83.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.74
2p58_C	116	Putative type III secretion protein YSCG; type III	81.62

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.1e-34  Score=294.53  Aligned_cols=196  Identities=11%  Similarity=0.097  Sum_probs=162.3

Q ss_pred             HHHHHHhcccCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 038373          114 AIEYMGQDASAS--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN---------TRL  181 (475)
Q Consensus       114 A~~l~~~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~---------~~~  181 (475)
                      +..+++++.+.+  + ....++.+|++|++.|++++|.++|++|.+.|+.||.+|||+||++|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            334445554432  2 2345888899999999999999999999999999999999999999987664         788


Q ss_pred             HHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373          182 ARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       182 A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~  257 (475)
                      |.++|++|.    .||++|||+||.+|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999997    4789999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 038373          258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIH  310 (475)
Q Consensus       258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~  310 (475)
                       .|+.||..||++||++|++.|++++|.++|++|   +..|+..||++|+..|+..
T Consensus       169 -~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          169 -SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             -TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             -cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence             499999999999999999999999999999999   7889999999999888754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.2e-33  Score=290.18  Aligned_cols=184  Identities=12%  Similarity=0.135  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCCH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKS---------IEMGKRVHELLRTSAFVKDV  163 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~  163 (475)
                      ...++.+|++|++.|++++|+++|++|...|  ||.+|||+||.+|++.+.         +++|.++|++|.+.|+.||.
T Consensus        26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence            3468889999999999999999999998755  999999999999987654         78999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      +|||+||++|++.|++++|.++|++|.+    ||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999984    799999999999999999999999999999999999999999999999


Q ss_pred             HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcC
Q 038373          240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG  279 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g  279 (475)
                      ++.|++++|.+++++|.+. |+.|+..||+.|+..|+..+
T Consensus       186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSHH
T ss_pred             hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999955 99999999999999998753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=7.4e-27  Score=245.31  Aligned_cols=336  Identities=9%  Similarity=-0.063  Sum_probs=245.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           89 LRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        89 ~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      ..+.+++..|+.++..|.+.|++++|+.+|+++....||..++..+..+|.+.|++++|.++|+.+...  .++..+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~  155 (597)
T 2xpi_A           78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL  155 (597)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence            344578999999999999999999999999998866699999999999999999999999999988643  689999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc-cC------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 038373          169 LIEMYGKCCNTRLARKVFDQLR-KR------------------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH---  226 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~-~~------------------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~---  226 (475)
                      ++.+|.++|++++|.++|+++. ..                  ++.+|+.++.+|.+.|++++|+++|++|.+.+..   
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            9999999999999999999543 32                  4889999999999999999999999999875421   


Q ss_pred             -------------------------------------------------------------------CCHHHHHHHHHHH
Q 038373          227 -------------------------------------------------------------------PDKETFLVVFAAC  239 (475)
Q Consensus       227 -------------------------------------------------------------------pd~~t~~~li~~~  239 (475)
                                                                                         +|..+|+.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                               4555666666666


Q ss_pred             HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHH
Q 038373          240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELED  317 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~  317 (475)
                      .+.|++++|.++|+.+.+. + ..+..+|+.++.+|.+.|++++|.++|+++  ....+..+|+.+...|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence            6666666666666666532 2 124555666666666666666666666665  12345677777777777777777777


Q ss_pred             HHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccH
Q 038373          318 RAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDE  397 (475)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~  397 (475)
                      +.++.+.++.|.....            +          ...+......|++++|+++|++|.+.+ ..+..++..+...
T Consensus       394 ~~~~~~~~~~~~~~~~------------~----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  450 (597)
T 2xpi_A          394 RYFSKSSTMDPQFGPA------------W----------IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ  450 (597)
T ss_dssp             HHHHHHHHHCTTCHHH------------H----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHH------------H----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            7766666655543311            0          001122344677999999999998653 2356667777777


Q ss_pred             HHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373          398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR  451 (475)
Q Consensus       398 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~  451 (475)
                      +.+.+......+.+..+..+.+..+.....+...|.+.|+.++|.++|.++...
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            777666655544444444433332333457888899999999999999998754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.3e-24  Score=228.28  Aligned_cols=274  Identities=8%  Similarity=-0.031  Sum_probs=155.1

Q ss_pred             HcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      +.|++++|.++|++|.+  +|..+|+.++.+|.+.|++++|+++|++|.+.+. .+..+|+.++.++.+.|++++|.+++
T Consensus       284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (597)
T 2xpi_A          284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLIS  362 (597)
T ss_dssp             THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            33444444444444433  5667888888888888888888888888876542 24555666666666666666666666


Q ss_pred             HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      +.+.+  ....+..+|+.++.+|.+.|++++|.++|+++ .. ..+..+|+.++.+|.+.|++++|.+.++.+.+..|..
T Consensus       363 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          363 NDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            66652  12224555666666666666666666666655 11 2245566666666666666655555555555544433


Q ss_pred             hhh-hccC----CCCCcc---cccceeEEe--cCe--EEEEEccCccchHHHHHHHHHHHHHHc----CcccC--Ccccc
Q 038373          331 AIV-DKIP----LPPRKK---QSATNMLEE--KNR--VSDYRSTDLYRGEYEKMKGLNGQMREA----GYVPD--TRYVL  392 (475)
Q Consensus       331 ~~~-~~~~----~~~~~~---~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~a~~l~~~M~~~----G~~Pd--~~t~~  392 (475)
                      ... ..+.    ..+...   ......+..  .+.  ....+......|++++|+++|++|.+.    |..|+  ..+|.
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            211 0000    000000   000000000  000  000111224467799999999999876    77888  45677


Q ss_pred             ccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373          393 HDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR  451 (475)
Q Consensus       393 ~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~  451 (475)
                      .+...+.+.+......+.+..+..+.+........+...|.+.|+.++|.+.|.++.+.
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            77777776666555544444444433332233446778889999999999999988653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.88  E-value=5e-23  Score=218.00  Aligned_cols=152  Identities=13%  Similarity=0.130  Sum_probs=128.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373          159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLR-------KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET  231 (475)
Q Consensus       159 ~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~-------~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t  231 (475)
                      +.--..|||+||++|||+|++++|.++|++|.       .||++|||+||+|||+.|++++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            34456799999999999999999999998875       47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCC-HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 038373          232 FLVVFAACASAEA-VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFE----PTVEVWEALRNF  306 (475)
Q Consensus       232 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~t~~~li~~  306 (475)
                      ||+||+++|+.|+ .++|.++|++|.++ |+.||.++|+++++++.+.+-++...+++.++...    |.+.|.+.|.+.
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence            9999999999998 57899999999966 99999999999999999887777666665555211    224555556677


Q ss_pred             HHHcC
Q 038373          307 AQIHG  311 (475)
Q Consensus       307 ~~~~g  311 (475)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            76655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=7.1e-23  Score=216.81  Aligned_cols=146  Identities=11%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc----cCCHHHHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRT---SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR----KRNLSSWHLM  200 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~----~~~~~tyn~l  200 (475)
                      ..|||+||++||+.|++++|.++|.+|.+   .|+.||++|||+||++||+.|++++|.++|++|.    .||++|||+|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            46899999999999999999999988764   5899999999999999999999999999999998    4899999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC------HHHHHHHHH
Q 038373          201 ISGYAANGQG-ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG------IEHYIAIIK  273 (475)
Q Consensus       201 i~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~y~~li~  273 (475)
                      |.|||+.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++    ..+.+. . ++.|+      +.+...|.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~----~Vrkv~-P-~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK----AVHKVK-P-TFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH----HHGGGC-C-CCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH----HHHHhC-c-ccCCCCCCcccccchHHHHH
Confidence            9999999985 789999999999999999999999998877654443    334443 2 55554      566678888


Q ss_pred             HHHhcC
Q 038373          274 VLGSAG  279 (475)
Q Consensus       274 ~~~~~g  279 (475)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            888876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.76  E-value=3.8e-17  Score=162.00  Aligned_cols=329  Identities=9%  Similarity=-0.026  Sum_probs=230.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...+..+...+.+.|++++|..+++...... .+..+|..+..++.+.|++++|.+.|+.+.+.. +.+..+|..+..+
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  110 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA  110 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence            34556666667888899999988887755533 466778888888999999999999999888764 3456678888899


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~  249 (475)
                      |.+.|++++|.+.|+++.+  | +...|+.+...|...|++++|.++|+++.+.. .-+..+|+.+...+...|++++|.
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  189 (388)
T 1w3b_A          111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999888763  4 44567778888888899999999998888753 224678888888889999999999


Q ss_pred             HHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          250 LYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       250 ~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      ..|+++.+.   .| +...|..+-..|...|++++|.+.|++. ...| +..+|..+...+...|+++.|.+.++...+.
T Consensus       190 ~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          190 HHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999888742   34 4567788888888999999999888877 3334 5778888888889999998888888877777


Q ss_pred             CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCC-ccccccccHHHHHHhhh
Q 038373          327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDT-RYVLHDIDEEAKEKALQ  405 (475)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~-~t~~~~l~~~~~~~~l~  405 (475)
                      .|.....-.                      .........|++++|...|+++.+.  .|+. .++..+...+...+...
T Consensus       267 ~p~~~~~~~----------------------~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~  322 (388)
T 1w3b_A          267 QPHFPDAYC----------------------NLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             CSSCHHHHH----------------------HHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred             CCCCHHHHH----------------------HHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence            665432100                      0011123356688899999888765  3443 23332222222222222


Q ss_pred             hhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373          406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR  451 (475)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~  451 (475)
                      ...+.+..+..+.+........+...|.+.|+.++|.+.|.++...
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2222233333322221112235666788889999999999988754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.71  E-value=1.1e-15  Score=151.54  Aligned_cols=231  Identities=13%  Similarity=0.056  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+...|+.+...|.+.|++++|++.|+++....|+. .+|..+..++.+.|++++|.+.+..+.+.. +.+..++..+-.
T Consensus        65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  143 (388)
T 1w3b_A           65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN  143 (388)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            466778888888888888888888888766555543 457777777888888888888887777654 233455666666


Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a  248 (475)
                      .|.+.|++++|.++|+++.+  | +..+|+.+...|.+.|++++|+..|+++.+... -+...|..+-..+...|++++|
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777777653  3 456777777777777777777777777665321 1233444444455555555555


Q ss_pred             HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          249 FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      ...++....   ..| +..++..+...|.+.|++++|.+.|+++ ...| +..+|..+...+.+.|++++|.+.++...+
T Consensus       223 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  299 (388)
T 1w3b_A          223 VAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555544441   122 2344444555555555555555555444 1122 234444444455555555444444444444


Q ss_pred             cCC
Q 038373          326 LDP  328 (475)
Q Consensus       326 ~~~  328 (475)
                      +.|
T Consensus       300 ~~p  302 (388)
T 1w3b_A          300 LCP  302 (388)
T ss_dssp             HCT
T ss_pred             hCc
Confidence            443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.70  E-value=1.2e-15  Score=153.78  Aligned_cols=268  Identities=9%  Similarity=-0.038  Sum_probs=214.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .++..|..+...|.+.|++++|+.+|+++.... .+..+|..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            567789999999999999999999999877644 467789999999999999999999999999876 557889999999


Q ss_pred             HHHHcCCHHHHHHHHHhccc--C-CH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--R-NL---SSWHLMISG------------YAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~-~~---~tyn~li~~------------~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                      +|.+.|++++|.++|+++.+  | +.   ..|..++..            |.+.|++++|+.+|+++.+.. ..+..++.
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  181 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE  181 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence            99999999999999999875  3 33   677766544            999999999999999998753 34778899


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--------
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEAL--------  303 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~l--------  303 (475)
                      .+...+.+.|++++|.++|+.+.+.  ...+..+|..+...|.+.|++++|.+.|+++ ...| +...|..+        
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999843  2236788999999999999999999999998 3334 44555554        


Q ss_pred             ----HHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHH
Q 038373          304 ----RNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQM  379 (475)
Q Consensus       304 ----i~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M  379 (475)
                          ...+...|+++.|...++...+..|.........                  ...........|++++|+..++++
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~a  321 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS------------------KERICHCFSKDEKPVEAIRVCSEV  321 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH------------------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH------------------HHHHHHHHHHCCCHHHHHHHHHHH
Confidence                7788999999999888888887777643210000                  000001122356688888888887


Q ss_pred             HHc
Q 038373          380 REA  382 (475)
Q Consensus       380 ~~~  382 (475)
                      .+.
T Consensus       322 ~~~  324 (450)
T 2y4t_A          322 LQM  324 (450)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.68  E-value=1.7e-14  Score=145.45  Aligned_cols=232  Identities=15%  Similarity=0.075  Sum_probs=178.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHH------------HHhccCCHHHHHHHHHHHHHc
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLD------------SCGNLKSIEMGKRVHELLRTS  157 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~------------~~~~~~~~~~a~~~~~~m~~~  157 (475)
                      +...|..+...|.+.|++++|.+.|+++....|+.    ..+..+..            .+.+.|++++|.++++.+.+.
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  172 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV  172 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45667777777777777777777777766655554    33444433            366677777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHH
Q 038373          158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFL  233 (475)
Q Consensus       158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~  233 (475)
                      . ..+..++..+..+|.+.|++++|.++|+++.+   .+..+|+.+...|...|++++|++.|+++...  .|+. ..+.
T Consensus       173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~  249 (450)
T 2y4t_A          173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFA  249 (450)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH
Confidence            4 45677888888888888888888888887753   46789999999999999999999999998864  4543 3444


Q ss_pred             HH------------HHHHHccCCHHHHHHHHHHHhhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373          234 VV------------FAACASAEAVKEGFLYFEIMKNDYGIVPG-----IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP  295 (475)
Q Consensus       234 ~l------------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p  295 (475)
                      .+            ...|.+.|++++|..+|+.+.+.   .|+     ..+|..+...|.+.|++++|.+.++++ ...|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            44            78888999999999999998843   444     457888999999999999999999987 3334


Q ss_pred             -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                       +...|..+...|...|+++.|.+.++...++.|+..
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  363 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ  363 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence             688999999999999999999999999888888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2e-14  Score=147.13  Aligned_cols=328  Identities=8%  Similarity=-0.022  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|-.+-..+.+.|++++|+..|+++....||..+|..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..+|.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            3456667778999999999999999988777999999999999999999999999999998875 556789999999999


Q ss_pred             HcCCHHHHHHHHHhcccCC-------------------------------------------------------------
Q 038373          175 KCCNTRLARKVFDQLRKRN-------------------------------------------------------------  193 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~~~-------------------------------------------------------------  193 (475)
                      +.|++++|...|+++.+.+                                                             
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            9999999999998774211                                                             


Q ss_pred             ---------------------HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 038373          194 ---------------------LSSWHLMISGYAA---NGQGADGLMLFEQMRK-----TGPHP--------DKETFLVVF  236 (475)
Q Consensus       194 ---------------------~~tyn~li~~~~~---~g~~~~A~~l~~~M~~-----~g~~p--------d~~t~~~li  236 (475)
                                           ...|..+...+..   .|++++|+.+|+++.+     ..-.|        +..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence                                 2223333333333   7999999999999987     31122        355788888


Q ss_pred             HHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCch
Q 038373          237 AACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDVE  314 (475)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~~  314 (475)
                      ..+...|++++|..+++.+.+. .  |+...|..+...|.+.|++++|.+.|++. ... .+...|..+...+...|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            8999999999999999998843 3  44778889999999999999999999987 333 46778888889999999999


Q ss_pred             HHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcc-ccc
Q 038373          315 LEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY-VLH  393 (475)
Q Consensus       315 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t-~~~  393 (475)
                      .|...++...+..|.....-.                      .........|++++|...++++.+.  .|+... +..
T Consensus       322 ~A~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~  377 (514)
T 2gw1_A          322 QAGKDFDKAKELDPENIFPYI----------------------QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNF  377 (514)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHH----------------------HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHH----------------------HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHH
Confidence            998888888777665432100                      0011123356688888888887754  343222 222


Q ss_pred             cccHHHHHHhhhhhhHHHHHHhhcccCCCC------Cchheeccccc---cccccchhHHHhhhcC
Q 038373          394 DIDEEAKEKALQYHSERLAIAYGLISTPPR------MPLRIIKNLRI---CGDCHNAIKIMSKIVG  450 (475)
Q Consensus       394 ~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~------~~~~ii~~~~~---~g~~~~A~~~~~~m~~  450 (475)
                      ....+...+......+.+..+..+.+..+.      ....+...+..   .|+.++|.+.+.+...
T Consensus       378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            212222222222222222222222222211      11234444555   7888888888777654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.58  E-value=1.9e-15  Score=149.27  Aligned_cols=209  Identities=11%  Similarity=0.018  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ..+|..|..++.+.|++++|.+.|.+.    +|..+|..++.++...|++++|..+++..++.  .+++.+.+.|+.+|.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence            359999999999999999999999653    67789999999999999999999988877764  566889999999999


Q ss_pred             HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      |.|+++++.++|+   .|+..+|+.+...|...|++++|..+|..+         ..|..+..++.+.|++++|.+.+..
T Consensus       106 Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~K  173 (449)
T 1b89_A          106 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK  173 (449)
T ss_dssp             ---CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence            9999999998885   478889999999999999999999999987         3899999999999999999999997


Q ss_pred             HhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          255 MKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       255 m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      +.       +..+|..++.+|+..|+++.|......+...|+.  ...++..|.+.|++++|...++.-..+++..
T Consensus       174 A~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          174 AN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             cC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            72       6789999999999999999998887777655555  4468899999999987777777666666544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.7e-14  Score=146.09  Aligned_cols=329  Identities=8%  Similarity=-0.062  Sum_probs=237.5

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---------
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---------  162 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---------  162 (475)
                      ||...|..+..+|.+.|++++|++.|++.....|+ ..+|..+..++.+.|++++|...|+.+.+.+- ++         
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~  115 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLE  115 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHH
Confidence            78999999999999999999999999987765554 56789999999999999999999999877651 11         


Q ss_pred             ----------------------------------------------------------------------HHHHHHHHHH
Q 038373          163 ----------------------------------------------------------------------VELNNKLIEM  172 (475)
Q Consensus       163 ----------------------------------------------------------------------~~~~~~Li~~  172 (475)
                                                                                            ...+..+...
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (514)
T 2gw1_A          116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS  195 (514)
T ss_dssp             HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence                                                                                  2223333333


Q ss_pred             HH---HcCCHHHHHHHHHhccc----------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373          173 YG---KCCNTRLARKVFDQLRK----------------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       173 ~~---k~g~~~~A~~~f~~m~~----------------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      +.   +.|++++|..+|+++.+                | +..+|..+...|...|++++|..+|+++.+..  |+..+|
T Consensus       196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~  273 (514)
T 2gw1_A          196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY  273 (514)
T ss_dssp             HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred             HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence            33   38999999999998765                2 35689999999999999999999999998865  448889


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 038373          233 LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIH  310 (475)
Q Consensus       233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~  310 (475)
                      ..+...+...|++++|...++.+...  ...+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...
T Consensus       274 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  351 (514)
T 2gw1_A          274 IYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE  351 (514)
T ss_dssp             HHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence            99999999999999999999998832  2235678899999999999999999999987 22 33677888898999999


Q ss_pred             CCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc-
Q 038373          311 GDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR-  389 (475)
Q Consensus       311 g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~-  389 (475)
                      |+++.|...++...+..|.....-.                      .........|++++|...++++.+.  .|+.. 
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~----------------------~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~  407 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPN----------------------FFAEILTDKNDFDKALKQYDLAIEL--ENKLDG  407 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSS
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHH----------------------HHHHHHHHCCCHHHHHHHHHHHHHh--hhccch
Confidence            9999888888887776655332100                      0011122356789999999988763  23322 


Q ss_pred             ------cccccccHHHH---HHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcC
Q 038373          390 ------YVLHDIDEEAK---EKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG  450 (475)
Q Consensus       390 ------t~~~~l~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~  450 (475)
                            .+......+..   .+......+.+..+..+.+........+...|.+.|+.++|.+.|.+...
T Consensus       408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence                  22222122222   22222222223333332222222223456678888999999999987754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.57  E-value=8.7e-13  Score=125.75  Aligned_cols=228  Identities=11%  Similarity=0.027  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK-DVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k  175 (475)
                      ..-.+..+|...|++++|+..++..  ..|+..++..+...+...++.++|.+.++++.+.+..| +...+..+-..|.+
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~  113 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY  113 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            4456778999999999999988764  23777789999999999999999999999999887655 56667777789999


Q ss_pred             cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF---LVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~---~~li~~~~~~g~~~~a~~~~  252 (475)
                      .|++++|.+.|++  ..+...|..+...|.+.|++++|.+.|+++.+..  |+..-+   ..++..+...|++++|..+|
T Consensus       114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~  189 (291)
T 3mkr_A          114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIF  189 (291)
T ss_dssp             TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            9999999999998  4578899999999999999999999999999864  664322   22334445669999999999


Q ss_pred             HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH-HHHHHHHHhccCCC
Q 038373          253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVEL-EDRAEELLGDLDPS  329 (475)
Q Consensus       253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~-a~~~~~~l~~~~~~  329 (475)
                      +++.+.  ...+...|+.+...|.+.|++++|.+.|++. ...| +..+|..++..+...|+.++ +.+.++.+.++.|+
T Consensus       190 ~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          190 QEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            999954  3347888999999999999999999999997 3333 67889999999999999865 56777888888887


Q ss_pred             Chh
Q 038373          330 KAI  332 (475)
Q Consensus       330 ~~~  332 (475)
                      ...
T Consensus       268 ~~~  270 (291)
T 3mkr_A          268 HPF  270 (291)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.57  E-value=1.5e-13  Score=134.74  Aligned_cols=235  Identities=10%  Similarity=-0.052  Sum_probs=191.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+...|..+...+.+.|++++|+++|++.....| +..+|..+...+.+.|++++|...|+.+.+.. +.+..++..+..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3556688889999999999999999998776444 66789999999999999999999999998875 456899999999


Q ss_pred             HHHHcCCHHHHHHHHHhccc--CC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK--RN-----------LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFA  237 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~--~~-----------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~  237 (475)
                      .|.+.|++++|...|+++.+  |+           ...++.+...|.+.|++++|+++|+++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            99999999999999998864  21           224455688999999999999999999986432 26889999999


Q ss_pred             HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038373          238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVEL  315 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~  315 (475)
                      .+...|++++|...++...+.  ...+..+|+.+...|.+.|++++|.+.|++. ...| +..+|..+...|...|+.++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999998843  2235788999999999999999999999988 3334 58889999999999999999


Q ss_pred             HHHHHHHHhccCCCC
Q 038373          316 EDRAEELLGDLDPSK  330 (475)
Q Consensus       316 a~~~~~~l~~~~~~~  330 (475)
                      |...++...++.|+.
T Consensus       300 A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          300 AVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCccc
Confidence            988888887776554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.53  E-value=3.6e-13  Score=138.71  Aligned_cols=327  Identities=11%  Similarity=-0.008  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ..|..+-..+.+.|++++|++.|++.....| +..+|..+..++.+.|++++|.+.++.+.+.. +.+..++..+..+|.
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            4455556666666666666666666554333 44556666666666666666666666666654 345566666666666


Q ss_pred             HcCCHHHHHHHHH-------------------------------------------------------------------
Q 038373          175 KCCNTRLARKVFD-------------------------------------------------------------------  187 (475)
Q Consensus       175 k~g~~~~A~~~f~-------------------------------------------------------------------  187 (475)
                      +.|++++|...|+                                                                   
T Consensus       105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN  184 (537)
T ss_dssp             HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred             HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence            6666666666553                                                                   


Q ss_pred             ------------------------------------------hccc--CC--------HHHHHHHHHHHHhcCChHHHHH
Q 038373          188 ------------------------------------------QLRK--RN--------LSSWHLMISGYAANGQGADGLM  215 (475)
Q Consensus       188 ------------------------------------------~m~~--~~--------~~tyn~li~~~~~~g~~~~A~~  215 (475)
                                                                ++.+  |+        ..+|..+...+...|++++|.+
T Consensus       185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  264 (537)
T 3fp2_A          185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV  264 (537)
T ss_dssp             CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence                                                      2221  11        2246666677788888899999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-
Q 038373          216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-  293 (475)
Q Consensus       216 l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-  293 (475)
                      .|++..+.  .|+..+|..+...+...|++++|...++...+. . ..+..+|..+...|.+.|++++|.+.|++. .. 
T Consensus       265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            99888874  466778888888888899999999998888743 2 224677888888899999999999988887 22 


Q ss_pred             CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHH
Q 038373          294 EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMK  373 (475)
Q Consensus       294 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  373 (475)
                      ..+...|..+...+...|+++.|...++...+..|.....-.                      .........|++++|.
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT----------------------FFAEILTDRGDFDTAI  398 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH----------------------HHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----------------------HHHHHHHHhCCHHHHH
Confidence            234677888888888899998888888777777665432100                      0011112356788999


Q ss_pred             HHHHHHHHcCcccCCcccccccc-------HHHHH----------HhhhhhhHHHHHHhhcccCCCCCchheeccccccc
Q 038373          374 GLNGQMREAGYVPDTRYVLHDID-------EEAKE----------KALQYHSERLAIAYGLISTPPRMPLRIIKNLRICG  436 (475)
Q Consensus       374 ~l~~~M~~~G~~Pd~~t~~~~l~-------~~~~~----------~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g  436 (475)
                      ..|++..+..  |+.......+.       .....          +......+.+..+..+.+........+...|.+.|
T Consensus       399 ~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          399 KQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             HHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            9998887654  33222211111       11111          22222222233333322222222235566678889


Q ss_pred             cccchhHHHhhhcCc
Q 038373          437 DCHNAIKIMSKIVGR  451 (475)
Q Consensus       437 ~~~~A~~~~~~m~~~  451 (475)
                      +.++|.+.|.+....
T Consensus       477 ~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          477 KIDEAIELFEDSAIL  491 (537)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999886543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=3.1e-13  Score=132.42  Aligned_cols=226  Identities=11%  Similarity=0.007  Sum_probs=181.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---------C
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV---------K  161 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~---------p  161 (475)
                      ..+...|+.+...|.+.|++++|++.|++.....| +..+|..+..++...|++++|.+.++.+.+..-.         .
T Consensus        96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  175 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG  175 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc
Confidence            35678999999999999999999999998776555 4778999999999999999999999999875310         1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF  236 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li  236 (475)
                      ...+++.+...|.+.|++++|..+|+++.+  |   +..+|+.+...|.+.|++++|++.|++..+.. ..+..+|+.+.
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  254 (365)
T 4eqf_A          176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLG  254 (365)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            133445668899999999999999998863  3   67899999999999999999999999998853 33678999999


Q ss_pred             HHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHH
Q 038373          237 AACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-------------TVEVWE  301 (475)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~t~~  301 (475)
                      .++.+.|++++|...|+...+.   .| +..+|..+...|.+.|++++|.+.|++. ...|             +...|.
T Consensus       255 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  331 (365)
T 4eqf_A          255 ATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA  331 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence            9999999999999999998843   44 4778999999999999999999999987 1112             367899


Q ss_pred             HHHHHHHHcCCchHHHHHHH
Q 038373          302 ALRNFAQIHGDVELEDRAEE  321 (475)
Q Consensus       302 ~li~~~~~~g~~~~a~~~~~  321 (475)
                      .|-.++...|+.+.+.++.+
T Consensus       332 ~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          332 ALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcCcHHHHHHHHH
Confidence            99999999999876666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.51  E-value=1.4e-12  Score=127.49  Aligned_cols=233  Identities=9%  Similarity=-0.052  Sum_probs=193.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+...+.+.|++++|+..|++.....| +..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            455677888899999999999999999876554 56678899999999999999999999998876 5688999999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHL---------------MISGYAANGQGADGLMLFEQMRKTGPH-PDKETFL  233 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~---------------li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~  233 (475)
                      |.+.|++++|.+.|+++.+  | +...+..               .+..+...|++++|+..|+++.+.... ++..++.
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  221 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  221 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            9999999999999998764  2 2222221               244445899999999999999885422 1588999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIH  310 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~  310 (475)
                      .+...+...|++++|...++...+.   .| +...|..+...|.+.|++++|.+.|++. .. ..+...|..+...|.+.
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            9999999999999999999998843   34 4678999999999999999999999987 22 34678899999999999


Q ss_pred             CCchHHHHHHHHHhccCCCC
Q 038373          311 GDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       311 g~~~~a~~~~~~l~~~~~~~  330 (475)
                      |+++.|...++...++.|..
T Consensus       299 g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            99999888888877765544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.50  E-value=5.1e-12  Score=121.13  Aligned_cols=232  Identities=10%  Similarity=-0.057  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      .+..++..+.+.|++++|..+|++.....| +...+..+...+...| ++++|.+.++...+.. +.+..++..+...|.
T Consensus        58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~  136 (330)
T 3hym_B           58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA  136 (330)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            344455555566666666666655444333 3344555555566666 6666666666665543 234555666666666


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      +.|++++|...|++..+  | +...|..+...|...|++++|.+.|++..+.. ..+..++..+...+...|++++|...
T Consensus       137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  215 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW  215 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence            66666666666665542  2 34455556666666666666666666665532 22445666666666666666666666


Q ss_pred             HHHHhhhCC-------CcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373          252 FEIMKNDYG-------IVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       252 ~~~m~~~~g-------~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~  322 (475)
                      ++...+...       ...+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...|+.+.|.+.++.
T Consensus       216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (330)
T 3hym_B          216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT  295 (330)
T ss_dssp             HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            665553210       0222345666666666666666666666655 11 22455566666666666666555555555


Q ss_pred             HhccCCCC
Q 038373          323 LGDLDPSK  330 (475)
Q Consensus       323 l~~~~~~~  330 (475)
                      ..++.|+.
T Consensus       296 al~~~p~~  303 (330)
T 3hym_B          296 ALGLRRDD  303 (330)
T ss_dssp             TTTTCSCC
T ss_pred             HHccCCCc
Confidence            55554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.48  E-value=4.9e-12  Score=121.27  Aligned_cols=264  Identities=8%  Similarity=-0.076  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .+..+...+...|++++|+++|++.....|+ ...+..+..++...|++++|..++..+.+.. +.+..++..+...|..
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence            4566777888999999999999987664443 3456677788899999999999999998865 4567889999999999


Q ss_pred             cC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          176 CC-NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       176 ~g-~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      .| ++++|...|++..+   .+...|..+...|...|++++|++.|++..+.... +...+..+...+...|++++|.+.
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99 99999999998764   35779999999999999999999999999886422 456777789999999999999999


Q ss_pred             HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 038373          252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-P----------FEPTVEVWEALRNFAQIHGDVELEDRAE  320 (475)
Q Consensus       252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~t~~~li~~~~~~g~~~~a~~~~  320 (475)
                      ++...+.  ...+...+..+...|.+.|++++|.+.|++. .          ...+..+|..+...+...|+.+.|...+
T Consensus       182 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          182 FSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999832  2335788999999999999999999999887 1          1334678999999999999999999888


Q ss_pred             HHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCC
Q 038373          321 ELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDT  388 (475)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~  388 (475)
                      +...++.|.....-.                      .........|++++|...|++..+  +.|+.
T Consensus       260 ~~a~~~~~~~~~~~~----------------------~la~~~~~~g~~~~A~~~~~~al~--~~p~~  303 (330)
T 3hym_B          260 RQALVLIPQNASTYS----------------------AIGYIHSLMGNFENAVDYFHTALG--LRRDD  303 (330)
T ss_dssp             HHHHHHSTTCSHHHH----------------------HHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred             HHHHhhCccchHHHH----------------------HHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence            888777665432100                      000111235668899998887654  34654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=5.2e-11  Score=115.19  Aligned_cols=232  Identities=15%  Similarity=0.061  Sum_probs=166.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC---CHH-HHHHH------------HHHHhccCCHHHHHHHHHHHHHc
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA---GYD-VFSSL------------LDSCGNLKSIEMGKRVHELLRTS  157 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p---~~~-t~~~l------------l~~~~~~~~~~~a~~~~~~m~~~  157 (475)
                      +...|..+...|.+.|++++|.+.|++.....|   +.. .+..+            ...+...|++++|.++++.+.+.
T Consensus        70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV  149 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            456677777778888888888888887766556   332 23333            35667778888888888887766


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 038373          158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFL  233 (475)
Q Consensus       158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~  233 (475)
                      . +.+..++..+...|.+.|++++|...|++..+   .+..+|..+...|...|++++|...|++..+..  |+ ...+.
T Consensus       150 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~  226 (359)
T 3ieg_A          150 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA  226 (359)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHH
Confidence            4 45677788888888888888888888887653   356788888888888888888888888877643  32 22222


Q ss_pred             ------------HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373          234 ------------VVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-----EHYIAIIKVLGSAGHLIEAEEFVERM-PFEP  295 (475)
Q Consensus       234 ------------~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p  295 (475)
                                  .+...+.+.|++++|...++...+.   .|+.     ..|..+...|.+.|++++|.+.|++. ...|
T Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence                        2255577888888888888887743   2332     23445677888888888888888877 2233


Q ss_pred             -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                       +..+|..+...+...|+++.|.+.++...++.|+..
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence             677888888888888888888888888777776653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.46  E-value=2.4e-12  Score=123.25  Aligned_cols=232  Identities=12%  Similarity=-0.039  Sum_probs=189.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+...+.+.|++++|+.+|++.....| +..++..+..++...|++++|.+.++.+.+.. +.+..++..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            344566777889999999999999998766444 56678888899999999999999999998875 5578899999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLM--------------IS-GYAANGQGADGLMLFEQMRKTGPHPDKETFLV  234 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~l--------------i~-~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~  234 (475)
                      |.+.|++++|.+.|++..+  | +...+..+              .. .+...|++++|.+.++++.+... .+..++..
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~  177 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS  177 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence            9999999999999998764  2 22233333              22 37788999999999999988642 37789999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCC
Q 038373          235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGD  312 (475)
Q Consensus       235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~  312 (475)
                      +...+...|++++|...++.+.+. . ..+...+..+...|.+.|++++|.+.|++. .. ..+..+|..+...+...|+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~  255 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVEL-R-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ  255 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999998843 2 235778999999999999999999999987 22 3467889999999999999


Q ss_pred             chHHHHHHHHHhccCCC
Q 038373          313 VELEDRAEELLGDLDPS  329 (475)
Q Consensus       313 ~~~a~~~~~~l~~~~~~  329 (475)
                      .+.|.+.++...++.|.
T Consensus       256 ~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            99998888887776655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.46  E-value=2.7e-12  Score=125.41  Aligned_cols=225  Identities=11%  Similarity=-0.005  Sum_probs=185.3

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK--  168 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--  168 (475)
                      ..+...|..+...|.+.|++++|++.|++.....| +..++..+...+...|++++|.+.+..+.+..- .+...+..  
T Consensus        95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~  173 (368)
T 1fch_A           95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAE  173 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence            35678899999999999999999999998766554 677899999999999999999999999988642 22222211  


Q ss_pred             -------------HHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038373          169 -------------LIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE  230 (475)
Q Consensus       169 -------------Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~  230 (475)
                                   .+..+.+.|++++|...|+++.+  |   +..+|..+...|.+.|++++|+..|++..... ..+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~  252 (368)
T 1fch_A          174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL  252 (368)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence                         24444489999999999998863  3   47899999999999999999999999998753 23578


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C-----------
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-T-----------  296 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~-----------  296 (475)
                      +|..+...+...|++++|...++...+.   .| +...|..+...|.+.|++++|.+.|++. ...| +           
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  329 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS  329 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence            9999999999999999999999998843   34 5778999999999999999999999887 1112 1           


Q ss_pred             HHHHHHHHHHHHHcCCchHHHHHHH
Q 038373          297 VEVWEALRNFAQIHGDVELEDRAEE  321 (475)
Q Consensus       297 ~~t~~~li~~~~~~g~~~~a~~~~~  321 (475)
                      ..+|..+..+|...|+.+.|..+.+
T Consensus       330 ~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          330 ENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             hHHHHHHHHHHHHhCChHhHHHhHH
Confidence            6899999999999999988776644

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.46  E-value=1.6e-11  Score=113.28  Aligned_cols=201  Identities=8%  Similarity=-0.022  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+...+...|++++|++.|++.....| +..++..+...+...|++++|.+.++++.+.. ..+..++..+...|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            56788889999999999999999998765444 56778888889999999999999999998775 45788889999999


Q ss_pred             HHcCCHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373          174 GKCCNTRLARKVFDQLRK----R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~----~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a  248 (475)
                      .+.|++++|.++|+++.+    | +...|..+...|...|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999998765    3 45688888899999999999999999988754 23577888888899999999999


Q ss_pred             HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 038373          249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV  299 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t  299 (475)
                      ..+++.+.+  ....+...+..+...|.+.|+.++|.++++++ ...|+...
T Consensus       195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          195 RQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            999998873  22235667888888899999999999988887 33344333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.44  E-value=1.9e-11  Score=110.21  Aligned_cols=206  Identities=11%  Similarity=-0.014  Sum_probs=143.1

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .+...|..+...+.+.|++++|++.|++.....| +...+..+...+...|++++|.+.++.+.+.. ..+..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            3455677777788888888888888877655443 45667777777788888888888888877654 446677777777


Q ss_pred             HHHHc-CCHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038373          172 MYGKC-CNTRLARKVFDQLRK----R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV  245 (475)
Q Consensus       172 ~~~k~-g~~~~A~~~f~~m~~----~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~  245 (475)
                      .|.+. |++++|...|+++.+    | +...|..+...|...|++++|++.|+++.+.. ..+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888877654    2 24577777777788888888888887777643 12466777777777777888


Q ss_pred             HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038373          246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE  301 (475)
Q Consensus       246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~  301 (475)
                      ++|..+++...+. .-..+...+..+...+.+.|+.++|..+++.+ ...|+.....
T Consensus       164 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          164 GDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            8887777777632 11134555666777777777777777777766 2345444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.44  E-value=5.3e-12  Score=120.83  Aligned_cols=225  Identities=11%  Similarity=0.023  Sum_probs=182.4

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL--  169 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L--  169 (475)
                      .+...|..+...+.+.|++++|.+.|++.....| +..++..+...+...|++++|.+.++.+.+.. ..+...+..+  
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  131 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQ  131 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhH
Confidence            4677899999999999999999999998766554 66778899999999999999999999998764 2222233332  


Q ss_pred             ------------HH-HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          170 ------------IE-MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       170 ------------i~-~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                                  .. .|.+.|++++|.+.|+++.+   .+...|..+...|...|++++|++.|++..+.. ..+..++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  210 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWN  210 (327)
T ss_dssp             --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHH
Confidence                        22 37788999999999998763   367899999999999999999999999998763 23578899


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHH
Q 038373          234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-------------TVEV  299 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~t  299 (475)
                      .+...+...|++++|...++...+. . ..+...+..+...|.+.|++++|.+.|++. ...|             +...
T Consensus       211 ~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  288 (327)
T 3cv0_A          211 KLGATLANGNRPQEALDAYNRALDI-N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM  288 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence            9999999999999999999998843 2 225778899999999999999999999987 2233             3778


Q ss_pred             HHHHHHHHHHcCCchHHHHHHH
Q 038373          300 WEALRNFAQIHGDVELEDRAEE  321 (475)
Q Consensus       300 ~~~li~~~~~~g~~~~a~~~~~  321 (475)
                      |..+...+.+.|+.+.|...++
T Consensus       289 ~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          289 WDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999966655543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.44  E-value=5.5e-11  Score=115.05  Aligned_cols=271  Identities=8%  Similarity=-0.044  Sum_probs=209.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      |+..|..+-..+.+.|++++|+..|++.....| +..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            456788888899999999999999998766554 46778889999999999999999999998874 4477899999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R----NLSSWHLM------------ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV  234 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~----~~~tyn~l------------i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~  234 (475)
                      |.+.|++++|...|++..+  |    +...|..+            ...+...|++++|+++|+++.+.. ..+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            9999999999999998864  3    33345444            578999999999999999998764 346788999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH----------
Q 038373          235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEA----------  302 (475)
Q Consensus       235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~----------  302 (475)
                      +...+...|++++|...++...+.  ...+...+..+...|.+.|++++|.+.|++. ...| +...|..          
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999832  2336788999999999999999999999988 2223 3343332          


Q ss_pred             --HHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHH
Q 038373          303 --LRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMR  380 (475)
Q Consensus       303 --li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~  380 (475)
                        +...+...|+.+.|...++...+..|.........                  ...........|++++|...+++..
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------------~~~la~~~~~~~~~~~A~~~~~~~~  299 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS------------------KERICHCFSKDEKPVEAIRICSEVL  299 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------------HHHHHHHHHHccCHHHHHHHHHHHH
Confidence              24568889999999888888877777653210000                  0000011123566899999999887


Q ss_pred             HcCcccCC
Q 038373          381 EAGYVPDT  388 (475)
Q Consensus       381 ~~G~~Pd~  388 (475)
                      +.  .|+.
T Consensus       300 ~~--~~~~  305 (359)
T 3ieg_A          300 QM--EPDN  305 (359)
T ss_dssp             HH--CTTC
T ss_pred             Hh--Cccc
Confidence            64  4543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.43  E-value=3.5e-11  Score=111.02  Aligned_cols=201  Identities=10%  Similarity=0.007  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYA  205 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~  205 (475)
                      ..|..+...+...|++++|.+.++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+   .+...|..+...|.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            457777778889999999999999998875 55788999999999999999999999998763   36789999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373          206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA  284 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A  284 (475)
                      ..|++++|+++|+++...+..| +...+..+...+...|++++|...++...+. . ..+...+..+...|.+.|+.++|
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998854556 4567888889999999999999999998843 2 22577889999999999999999


Q ss_pred             HHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          285 EEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       285 ~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      .++|++. .. ..+...|..+...+...|+.+.|.+.++.+.++.|+...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            9999988 32 346777888888999999999999999888888776643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.41  E-value=6.4e-11  Score=106.66  Aligned_cols=201  Identities=12%  Similarity=-0.023  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGY  204 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~  204 (475)
                      ...+..+...+...|++++|.+.++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+   .+..+|..+...|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4567888889999999999999999998865 45688999999999999999999999998763   3677999999999


Q ss_pred             Hhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH
Q 038373          205 AAN-GQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL  281 (475)
Q Consensus       205 ~~~-g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~  281 (475)
                      ... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|...++.+.+.   .| +...+..+...|.+.|++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCH
Confidence            999 999999999999988444454 567888999999999999999999998843   33 477889999999999999


Q ss_pred             HHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          282 IEAEEFVERM-PFE--PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       282 ~~A~~~~~~m-~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      ++|.++|++. ...  .+...|..+...+...|+.+.+....+.+.+..|+...
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            9999999987 222  46777888888889999999888888888777776643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.40  E-value=3.3e-11  Score=109.44  Aligned_cols=193  Identities=12%  Similarity=-0.008  Sum_probs=151.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      ++...|..+-..+.+.|++++|+..|++.....| +...+..+-.++.+.|++++|...++...+.. +.+...+..+-.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            4556778888889999999999999998777665 45668888888999999999999999998875 456788899999


Q ss_pred             HHHHc-----------CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373          172 MYGKC-----------CNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFA  237 (475)
Q Consensus       172 ~~~k~-----------g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~  237 (475)
                      .|.+.           |++++|...|++..+  | +...|..+-..|...|++++|+..|++..+..  .+...+..+-.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence            99999           999999999988763  4 56788889999999999999999999998877  68888899999


Q ss_pred             HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          238 ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .+...|++++|...|+...+   ..| +...+..+...|.+.|+.++|.+.|++.
T Consensus       160 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999998874   344 4677888888999999999999888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=2.7e-11  Score=115.35  Aligned_cols=217  Identities=11%  Similarity=0.022  Sum_probs=177.2

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT  179 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~  179 (475)
                      |+..-..|++.+|+..++......|+.  .....+..++...|+++.|...++.   . -.|+..++..+...|.+.|+.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            445667899999999998766655654  2456678899999999999876644   2 367888999999999999999


Q ss_pred             HHHHHHHHhcc----cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373          180 RLARKVFDQLR----KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI  254 (475)
Q Consensus       180 ~~A~~~f~~m~----~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~  254 (475)
                      ++|.+.|+++.    .| +...|..+-..|...|++++|++.|++      ..+...+..+...+.+.|+.++|.+.++.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999874    25 556777777999999999999999987      46788999999999999999999999999


Q ss_pred             HhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373          255 MKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPS  329 (475)
Q Consensus       255 m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~  329 (475)
                      +.+.   .|+...   ..+++..+...|++++|.++|+++  ....+...|+.+..++.+.|++++|+..++...+..|+
T Consensus       156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9843   466432   233445556669999999999999  23458889999999999999999999999998888887


Q ss_pred             Ch
Q 038373          330 KA  331 (475)
Q Consensus       330 ~~  331 (475)
                      ..
T Consensus       233 ~~  234 (291)
T 3mkr_A          233 HP  234 (291)
T ss_dssp             CH
T ss_pred             CH
Confidence            65

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=2.3e-11  Score=111.26  Aligned_cols=196  Identities=9%  Similarity=0.008  Sum_probs=143.8

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ......|..+...+.+.|++++|..+|++.....| +...+..+...+...|++++|.+.++.+.+.. ..+..++..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            35566777888889999999999999998776554 56678888888999999999999999988775 45788888999


Q ss_pred             HHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      ..|.+.|++++|.+.|++..+   .+...|..+...|.+.|++++|+..+++..+.. ..+...+..+...+...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999987753   367788889999999999999999999888753 2367788888888899999999


Q ss_pred             HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |...++...+. . ..+..++..+...|.+.|+.++|.+.|++.
T Consensus       178 A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          178 ALSQFAAVTEQ-D-PGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHh-C-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999888743 2 234667888888899999999999888887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.38  E-value=5.1e-11  Score=111.11  Aligned_cols=217  Identities=9%  Similarity=-0.099  Sum_probs=172.9

Q ss_pred             cCChHHHHHHHHhcccCC----C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          108 EGKVREAIEYMGQDASAS----A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~----p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      .|++++|++.|++.....    | +..+|..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            477899999998876642    1 34568888888999999999999999998875 45788999999999999999999


Q ss_pred             HHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373          183 RKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY  259 (475)
Q Consensus       183 ~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~  259 (475)
                      .+.|++..+  | +..+|..+...|.+.|++++|.+.|+++.+.  .|+...+...+..+...|++++|...+...... 
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            999998764  3 6789999999999999999999999999874  465555555666667789999999999877743 


Q ss_pred             CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          260 GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-----VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       260 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                       ..++...+ .++..+...++.++|.+.+++. ...|+     ...|..+...|...|+.+.|...++...++.|..
T Consensus       174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence             23343334 4777788888889999999887 33332     5778888889999999988888888887777654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=3.5e-11  Score=110.86  Aligned_cols=222  Identities=9%  Similarity=-0.038  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA--FVKD----VELNNK  168 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~  168 (475)
                      ...|..+-..+.+.|++++|++.|++......+..+|..+..++...|++++|.+.+....+..  ..++    ..++..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            4578888889999999999999998865433677889999999999999999999999987753  1222    588999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAV  245 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~  245 (475)
                      +...|.+.|++++|...|++..+  ++.       ..+.+.|++++|.+.++++...  .| +...+..+...+...|++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence            99999999999999999998764  442       3467778899999999998874  34 456788888999999999


Q ss_pred             HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      ++|...++...+. . ..+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...|+.+.|.+.++..
T Consensus       156 ~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          156 PNAVKAYTEMIKR-A-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999998843 2 235778899999999999999999999988 22 345788888999999999998888888777


Q ss_pred             hccC
Q 038373          324 GDLD  327 (475)
Q Consensus       324 ~~~~  327 (475)
                      .++.
T Consensus       234 ~~~~  237 (258)
T 3uq3_A          234 RTKD  237 (258)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            6665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.36  E-value=1.8e-10  Score=118.50  Aligned_cols=234  Identities=9%  Similarity=-0.005  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .+|..+-..+...|++++|.+.|++.....|+..+|..+...+...|++++|.+.+..+.+.. ..+..++..+...|.+
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence            356777778899999999999999987777888889999999999999999999999998875 4578899999999999


Q ss_pred             cCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      .|++++|...|++..+  | +...|..+...|...|++++|++.|++..+.. ..+...+..+...+...|++++|...+
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999998763  3 56799999999999999999999999998864 235678889999999999999999999


Q ss_pred             HHHhhhCCCcC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHH
Q 038373          253 EIMKNDYGIVP----GIEHYIAIIKVLGSA----------GHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       253 ~~m~~~~g~~p----~~~~y~~li~~~~~~----------g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a  316 (475)
                      +.+.+...-.+    ....+..+...|.+.          |++++|.+.|++. .. ..+...|..+...|...|+.+.|
T Consensus       402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence            98874311111    122244455677777          9999999999988 22 34678899999999999999999


Q ss_pred             HHHHHHHhccCCCCh
Q 038373          317 DRAEELLGDLDPSKA  331 (475)
Q Consensus       317 ~~~~~~l~~~~~~~~  331 (475)
                      .+.++...++.|...
T Consensus       482 ~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          482 IELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHHHHHC--CH
T ss_pred             HHHHHHHHHhCCCcH
Confidence            888888887776553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.34  E-value=6.1e-12  Score=124.30  Aligned_cols=210  Identities=10%  Similarity=0.042  Sum_probs=112.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           89 LRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        89 ~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      ....+|...|..++.++.+.|++++|...++...+..+++.+.+.++.+|++.|+++++.++++       .|+..+|+.
T Consensus        55 fika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~  127 (449)
T 1b89_A           55 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ  127 (449)
T ss_dssp             ------------------------------------------------------CHHHHTTTTT-------CC-------
T ss_pred             HHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHH
Confidence            3445788899999999999999999999777665555777889999999999999999998885       478889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a  248 (475)
                      +.+.|...|++++|...|..+     ..|.-|+.++.+.|++++|++.++++      -+..||..++.+|...|+++.|
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             ---------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence            999999999999999999988     47999999999999999999999998      3789999999999999999999


Q ss_pred             HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      ......+    ...|+  ....++..|.+.|++++|..+++.- +.+ .....|+-|--.|++.. .+...+.++.+
T Consensus       197 ~~~~l~L----~~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~  266 (449)
T 1b89_A          197 QMCGLHI----VVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF  266 (449)
T ss_dssp             HHTTTTT----TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HHHHHHH----HhCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence            6554432    23343  3457999999999999999999876 543 45778888888888764 43334444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=9.4e-11  Score=107.13  Aligned_cols=203  Identities=10%  Similarity=0.029  Sum_probs=156.9

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMIS  202 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~  202 (475)
                      ....+|..+-..+...|++++|..+++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+   .+..+|..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            344567777888889999999999999998764 45788999999999999999999999998763   36789999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHH
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI  282 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~  282 (475)
                      .|...|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++.+.+.  ...+...+..+...|.+.|+++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999998864 336778889999999999999999999998843  2235778899999999999999


Q ss_pred             HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          283 EAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       283 ~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                      +|.+.|++. . ...+..+|..+...|...|+.+.|.+.++...++.|+...
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            999999987 2 2346788999999999999999999999988888777643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=1.9e-10  Score=107.19  Aligned_cols=231  Identities=14%  Similarity=0.051  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYG  174 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~  174 (475)
                      +...-..+.+.|++++|++.|++.....|+.. .+..+..++...|++++|.+.+....+.+-.++  ..+|..+...|.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            34455678899999999999998776565543 788888899999999999999999988542222  345889999999


Q ss_pred             HcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      +.|++++|...|++..+   .+..+|..+...|...|++++|++.|++..+.  .| +...|..+...+-..+++++|.+
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998763   36679999999999999999999999998775  44 45566666624555569999999


Q ss_pred             HHHHHhhhCCCcCC-HHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCCchHH
Q 038373          251 YFEIMKNDYGIVPG-IEHYIAIIKVLGSAGH---LIEAEEFVERM----PFEPT------VEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       251 ~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~t~~~li~~~~~~g~~~~a  316 (475)
                      .|+...+.   .|+ ...+..+...+...|+   .++|...|++.    ...|+      ...|..+-..|...|+.+.|
T Consensus       164 ~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          164 SFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999843   343 6677778888888888   77788887776    11244      25777788899999999999


Q ss_pred             HHHHHHHhccCCCChhh
Q 038373          317 DRAEELLGDLDPSKAIV  333 (475)
Q Consensus       317 ~~~~~~l~~~~~~~~~~  333 (475)
                      .+.++...++.|++...
T Consensus       241 ~~~~~~al~~~p~~~~a  257 (272)
T 3u4t_A          241 DAAWKNILALDPTNKKA  257 (272)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhcCccHHHH
Confidence            99999999898887643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.30  E-value=1.3e-10  Score=108.36  Aligned_cols=218  Identities=9%  Similarity=-0.109  Sum_probs=170.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+...|.+.|++++|++.|++.....| +..+|..+...+...|++++|...++...+.. +.+..++..+...
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~  120 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence            567889999999999999999999998776555 57789999999999999999999999998874 4468899999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      |.+.|++++|...|+++.+  |+...+...+..+...|++++|...|++..... .++...+. ++..+...++.++|..
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~  198 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLME  198 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHH
Confidence            9999999999999998863  555555555566677899999999998887653 34444444 6777788888999999


Q ss_pred             HHHHHhhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373          251 YFEIMKNDYGIVPG-----IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRA  319 (475)
Q Consensus       251 ~~~~m~~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~  319 (475)
                      .+.....   ..|+     ...|..+...|.+.|++++|.+.|++. ...|+.  |.....++...|++++|.+.
T Consensus       199 ~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~  268 (275)
T 1xnf_A          199 RLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDD  268 (275)
T ss_dssp             HHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHH
Confidence            9988763   2332     577889999999999999999999988 555633  22223445566666544443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=3.3e-09  Score=99.20  Aligned_cols=227  Identities=9%  Similarity=-0.055  Sum_probs=190.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      -+..++..+-..|.+.|++++|++.|++.... -+..++..+-..+..    .+++++|...|+...+.+   +...+..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            35667788888899999999999999987662 245667778788888    999999999999999887   7888999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          169 LIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       169 Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      |-..|.+    .++.++|...|++..+. +..+|..+-..|..    .|++++|++.|++..+.+   +...+..+-..+
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence            9999999    99999999999987654 67789999999999    999999999999999876   567777787788


Q ss_pred             Hc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-
Q 038373          240 AS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM-PFEPTVEVWEALRNFAQI-  309 (475)
Q Consensus       240 ~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~-  309 (475)
                      ..    .++.++|...++...+. +   +...+..+-..|.+    .|+.++|.+.|++. .. .+...+..|-..|.. 
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcC
Confidence            77    99999999999998843 3   45677888888999    99999999999987 32 346777778788888 


Q ss_pred             ---cCCchHHHHHHHHHhccCCCCh
Q 038373          310 ---HGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       310 ---~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                         .++.++|.+.++...++.+...
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHHH
Confidence               8999888888888777766544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.24  E-value=5.6e-10  Score=101.17  Aligned_cols=191  Identities=16%  Similarity=0.022  Sum_probs=154.1

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS  202 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~  202 (475)
                      ++...+..+-..+.+.|++++|...++...+.. +.+...+..+-..|.+.|++++|...|++..+  | +...|..+-.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            455677888888999999999999999998875 56788999999999999999999999998763  4 6679999999


Q ss_pred             HHHhc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHH
Q 038373          203 GYAAN-----------GQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA  270 (475)
Q Consensus       203 ~~~~~-----------g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~  270 (475)
                      .|.+.           |++++|+..|++..+.  .| +...+..+-..+...|++++|...|++..+. .  .+...+..
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~  156 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence            99999           9999999999999875  45 5678888999999999999999999999854 5  67888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373          271 IIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEEL  322 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~  322 (475)
                      +-..|...|++++|.+.|++. ...| +...+..+...+...|+.++|...++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999988 3334 677888888888889999666555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=3.8e-10  Score=103.84  Aligned_cols=189  Identities=10%  Similarity=-0.056  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-------HHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-------LSSWH  198 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-------~~tyn  198 (475)
                      .+|..+-..+...|++++|..++....+..  .+..++..+..+|.+.|++++|...|++..+  | +       ..+|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            467778888999999999999999999887  8889999999999999999999999998763  2 2       57999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh
Q 038373          199 LMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS  277 (475)
Q Consensus       199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~  277 (475)
                      .+...|...|++++|++.|++....  .|+.       ..+.+.|++++|...++.+..   ..| +...|..+...|.+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999884  4553       346677899999999999883   233 46678899999999


Q ss_pred             cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          278 AGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       278 ~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .|++++|.+.|++. . ...+...|..+...+...|+++.|...++...++.|...
T Consensus       152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  207 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV  207 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH
Confidence            99999999999988 2 234688899999999999999999988888877776653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.21  E-value=5.5e-10  Score=110.37  Aligned_cols=232  Identities=10%  Similarity=0.037  Sum_probs=189.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKS-IEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      +...|+.+-..+.+.|++++|++.|++.....|+ ..+|+.+-.++...|+ +++|...+++..+.. .-+..+|+.+-.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            3457888888899999999999999997776665 4568888889999996 999999999999876 457889999999


Q ss_pred             HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS-AEAVKE  247 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~-~g~~~~  247 (475)
                      +|.+.|++++|...|++..+   .+...|+.+-..|.+.|++++|+..|+++.+.... +...|+.+-.++.+ .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999998864   37889999999999999999999999999986432 67889999999988 666577


Q ss_pred             H-----HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 038373          248 G-----FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAG--HLIEAEEFVERMPFEP-TVEVWEALRNFAQIHG-------  311 (475)
Q Consensus       248 a-----~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~t~~~li~~~~~~g-------  311 (475)
                      |     ...++....   +.| +...|+.+-..|.+.|  +.++|.+.+.++...| +...+..|...|.+.|       
T Consensus       254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            7     477777763   455 4678888888899988  6899999998874344 5677888888888864       


Q ss_pred             --CchHHHHHHHHH-hccCCCC
Q 038373          312 --DVELEDRAEELL-GDLDPSK  330 (475)
Q Consensus       312 --~~~~a~~~~~~l-~~~~~~~  330 (475)
                        ..+.|.++++.+ .++.|..
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r  352 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIR  352 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCchh
Confidence              246677777777 6665544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=9.1e-11  Score=111.30  Aligned_cols=236  Identities=10%  Similarity=0.024  Sum_probs=168.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhccc--------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDAS--------ASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS------  157 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~--------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------  157 (475)
                      .+..+|..+...|...|++++|+.+|++...        ..| ...++..+...+...|++++|...+.+..+.      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3466889999999999999999999987554        122 3345788888999999999999999988764      


Q ss_pred             CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 038373          158 AF-VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT--  223 (475)
Q Consensus       158 g~-~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--  223 (475)
                      +- .....++..+...|...|++++|...|++..+          + ...+|+.+...|...|++++|+++|++..+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            22 23467888999999999999999999987752          1 3457889999999999999999999998774  


Q ss_pred             ----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhC------CCcCC-------HHHHHHHHHHHHhcCCHHHHH
Q 038373          224 ----GPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDY------GIVPG-------IEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       224 ----g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~------g~~p~-------~~~y~~li~~~~~~g~~~~A~  285 (475)
                          +-.|+ ..++..+...+...|++++|...++.+.+..      ...+.       ...+..+...+...+.+.+|.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                22343 3478889999999999999999999887420      11111       222334444555566666677


Q ss_pred             HHHHhCC-CC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373          286 EFVERMP-FE-PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP  328 (475)
Q Consensus       286 ~~~~~m~-~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~  328 (475)
                      ..+.... .. .+..+|..+...|.+.|+.++|.+.++...++.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            7777662 22 3456788888999999999888888777665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=1.3e-08  Score=97.30  Aligned_cols=232  Identities=11%  Similarity=0.081  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHc----CCh----HHHHHHHHhcccCCC-CHHHHHHHHHHHh-------ccCCH-------HHHHHHH
Q 038373           95 LESLDVNLLSLCKE----GKV----REAIEYMGQDASASA-GYDVFSSLLDSCG-------NLKSI-------EMGKRVH  151 (475)
Q Consensus        95 ~~~~n~li~~~~~~----g~~----~~A~~l~~~~~~~~p-~~~t~~~ll~~~~-------~~~~~-------~~a~~~~  151 (475)
                      ...|...|.---+.    ++.    ++|..+|++.....| +...|..+...+.       +.|++       ++|..+|
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~   87 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY   87 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence            34566666543332    233    688889988665444 5556776666654       35886       8999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373          152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLS-SWHLMISGYAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      ++..+.--.-+...|..+...+.+.|++++|..+|++..+  | +.. .|..+...+.+.|++++|..+|++..+... +
T Consensus        88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~  166 (308)
T 2ond_A           88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T  166 (308)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C
Confidence            9998732144677999999999999999999999998764  4 343 899999999999999999999999987542 3


Q ss_pred             CHHHHHHHHHHH-HccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHH
Q 038373          228 DKETFLVVFAAC-ASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-P---FEP--TVEV  299 (475)
Q Consensus       228 d~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~t  299 (475)
                      +...|....... ...|+.++|..+|+...+.   .| +...|..++..+.+.|++++|..+|++. .   +.|  ....
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l  243 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            344454333332 2379999999999998843   23 5678899999999999999999999988 2   344  4778


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          300 WEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       300 ~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      |..++....+.|+.+.|..+++...+..|+.
T Consensus       244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          244 WARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            9999999999999999988888888777764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.10  E-value=2.1e-08  Score=86.79  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+...+.+.|++++|.+.|++.....| +..++..+...+...|++++|...++.+.+.. ..+..++..+...|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34567777788888999999999988776554 55667778888888888888888888887764 44677777888888


Q ss_pred             HHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373          174 GKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      .+.|++++|.+.|++..+   .+...|..+...|...|++++|.+.|++..+.. ..+..++..+...+...|++++|..
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            888888888888877653   356677777778888888888888888777653 2356677777777777888888887


Q ss_pred             HHHHHh
Q 038373          251 YFEIMK  256 (475)
Q Consensus       251 ~~~~m~  256 (475)
                      .++...
T Consensus       166 ~~~~~~  171 (186)
T 3as5_A          166 HFKKAN  171 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.08  E-value=4.4e-09  Score=97.79  Aligned_cols=205  Identities=11%  Similarity=0.015  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ...|..+...|.+.|++++|++.|++.....++    ..+|..+-..+...|++++|.+.++...+.. +.+..++..+.
T Consensus        37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~  115 (272)
T 3u4t_A           37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG  115 (272)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence            346788888999999999999999986663322    3348888899999999999999999998865 45678999999


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC--
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEA--  244 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~--  244 (475)
                      ..|.+.|++++|...|++..+  | +...|..+...+...+++++|++.|++..+.  .|+ ...+..+...+...|+  
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~  193 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDT  193 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcch
Confidence            999999999999999998874  3 5668888773444456999999999999885  344 6677778888888888  


Q ss_pred             -HHHHHHHHHHHhhhCCCcCC------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038373          245 -VKEGFLYFEIMKNDYGIVPG------IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEA  302 (475)
Q Consensus       245 -~~~a~~~~~~m~~~~g~~p~------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~  302 (475)
                       .++|...++...+...-.|+      ...|..+-..|.+.|++++|.+.|++. .+.|+ ...+..
T Consensus       194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  260 (272)
T 3u4t_A          194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG  260 (272)
T ss_dssp             SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence             77888888877744333344      257888899999999999999999988 33443 344433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.06  E-value=1.6e-08  Score=88.35  Aligned_cols=157  Identities=10%  Similarity=-0.043  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .|..+=..|.+.|++++|++.|++.....| +..++..+-.++.+.|++++|...+....... ..+...+..+...+.+
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHH
Confidence            334444444444444444444443332222 22233333344444444444444444433332 2223333333334444


Q ss_pred             cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          176 CCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       176 ~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      .++.+.|...+++..+   .+...|..+-..|.+.|++++|++.|++..+.. .-+..+|..+-..+.+.|++++|.+.|
T Consensus        86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            4444444444433221   123334444444444444444444444433321 012233333334444444444444444


Q ss_pred             HHH
Q 038373          253 EIM  255 (475)
Q Consensus       253 ~~m  255 (475)
                      ++.
T Consensus       165 ~~a  167 (184)
T 3vtx_A          165 KKA  167 (184)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.06  E-value=6.9e-09  Score=105.73  Aligned_cols=202  Identities=10%  Similarity=-0.020  Sum_probs=167.1

Q ss_pred             hHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038373          111 VREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSI-EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ  188 (475)
Q Consensus       111 ~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~  188 (475)
                      ++++++.+++.....| +...+..+-.++...|++ ++|.+.|++..+.. ..+..+|..|-..|.+.|++++|.+.|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4566666766555444 667788888899999999 99999999998875 45688999999999999999999999998


Q ss_pred             cc--cCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHHHH
Q 038373          189 LR--KRNLSSWHLMISGYAAN---------GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA--------EAVKEGF  249 (475)
Q Consensus       189 m~--~~~~~tyn~li~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~--------g~~~~a~  249 (475)
                      ..  .|+...|..+-..|...         |++++|++.|++..+.. .-+...|..+-.++...        |++++|.
T Consensus       163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            76  47778999999999999         99999999999998853 22577889999999888        9999999


Q ss_pred             HHHHHHhhhCCCcC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHH
Q 038373          250 LYFEIMKNDYGIVP----GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELED  317 (475)
Q Consensus       250 ~~~~~m~~~~g~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~  317 (475)
                      ..|+...+.   .|    +...|..+-..|.+.|++++|.+.|++. ...| +...|..+-..+...|+.++|.
T Consensus       242 ~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          242 SAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999998842   44    6788999999999999999999999987 3333 5667888888888888775544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=4.5e-08  Score=93.50  Aligned_cols=196  Identities=12%  Similarity=0.044  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHhccc-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLC-------KEGKV-------REAIEYMGQDAS-ASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRT  156 (475)
Q Consensus        93 ~~~~~~n~li~~~~-------~~g~~-------~~A~~l~~~~~~-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~  156 (475)
                      .+...|..+...+.       +.|++       ++|..+|++... ..|+. ..|..+...+.+.|++++|.++|+...+
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  127 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            45667877777765       45886       999999999887 46754 4788999999999999999999999988


Q ss_pred             cCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHH
Q 038373          157 SAFVKD-VE-LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYA-ANGQGADGLMLFEQMRKTGPHPDKE  230 (475)
Q Consensus       157 ~g~~p~-~~-~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~-~~g~~~~A~~l~~~M~~~g~~pd~~  230 (475)
                      .  .|+ .. +|..+...+.+.|++++|..+|++..+  | +...|........ ..|+.++|..+|++..+.. .-+..
T Consensus       128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~  204 (308)
T 2ond_A          128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE  204 (308)
T ss_dssp             S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred             c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence            5  443 33 899999999999999999999998764  2 3445544333322 3699999999999988742 22677


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .|..++..+.+.|++++|..+|+.......+.|  ....|..++..+.+.|+.++|..+++++
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            889999999999999999999999985323455  3668899999999999999999999987

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.04  E-value=1.9e-08  Score=87.89  Aligned_cols=170  Identities=11%  Similarity=0.038  Sum_probs=145.0

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMIS  202 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~  202 (475)
                      -+...|..+-..+.+.|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...++....   .+...|..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            467789999999999999999999999998875 55788999999999999999999999998753   36678888889


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL  281 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~  281 (475)
                      .+...+++++|.+.+.+..... .-+...+..+-..+.+.|++++|.+.|+...+.   .| +...|..+-..|.+.|++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCH
Confidence            9999999999999999988753 235778888999999999999999999998843   34 567889999999999999


Q ss_pred             HHHHHHHHhC-CCCCCHHHH
Q 038373          282 IEAEEFVERM-PFEPTVEVW  300 (475)
Q Consensus       282 ~~A~~~~~~m-~~~p~~~t~  300 (475)
                      ++|.+.|++. ...|+...|
T Consensus       158 ~~A~~~~~~al~~~p~~a~~  177 (184)
T 3vtx_A          158 DEAVKYFKKALEKEEKKAKY  177 (184)
T ss_dssp             HHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHhCCccCHHH
Confidence            9999999987 555655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.04  E-value=2.3e-08  Score=86.48  Aligned_cols=162  Identities=12%  Similarity=-0.018  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      .+..+...|.+.|++++|...|+++.+   .+...|..+...|...|++++|.+.|++..+.. ..+...+..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            445555566666666666666665543   245566666666666666666666666665542 2245556666666666


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRA  319 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~  319 (475)
                      .|++++|.+.++.+.+.  ...+...+..+...|.+.|++++|.++|++. . ...+...|..+...+...|+.+.|.+.
T Consensus        89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666666666532  1224455566666666666666666666665 1 123455666666666666666666666


Q ss_pred             HHHHhccCCC
Q 038373          320 EELLGDLDPS  329 (475)
Q Consensus       320 ~~~l~~~~~~  329 (475)
                      ++...++.|+
T Consensus       167 ~~~~~~~~~~  176 (186)
T 3as5_A          167 FKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHcCCC
Confidence            5555544433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.00  E-value=3.7e-09  Score=104.82  Aligned_cols=232  Identities=10%  Similarity=-0.003  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDVE  164 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~  164 (475)
                      ...+..+-..+.+.|++++|+..|++.....|+.     ..|..+-..+...|++++|.+.+++..+.    +- .....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            4455566667899999999999999876655543     36788888899999999999999988654    21 23456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKR---------NLSSWHLMISGYAANGQ-----------------GADGLMLFE  218 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------~~~tyn~li~~~~~~g~-----------------~~~A~~l~~  218 (475)
                      ++..+...|...|++++|...|++..+-         ...+|+.+...|...|+                 +++|++.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7888899999999999999999876521         24488999999999999                 999999998


Q ss_pred             HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373          219 QMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEAEEFVE  289 (475)
Q Consensus       219 ~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~~~~  289 (475)
                      +..+.    +-.| ...++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|.+.|+
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            86542    2222 2347888888999999999999999887632111112    2378889999999999999999998


Q ss_pred             hC-CC---CC----CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          290 RM-PF---EP----TVEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       290 ~m-~~---~p----~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      +. ..   ..    ...+|..+...|...|+.+.|...++...++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            76 11   11    2567778888999999998887776665443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=1.8e-07  Score=87.24  Aligned_cols=188  Identities=9%  Similarity=-0.046  Sum_probs=161.4

Q ss_pred             CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373           93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE  164 (475)
Q Consensus        93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~  164 (475)
                      .+...+..+-..|.+    .|++++|++.|++....+ +...+..+-..+..    .+++++|.+.++...+.+   +..
T Consensus        36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~  111 (273)
T 1ouv_A           36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAE  111 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc
Confidence            345678888888999    999999999999876654 67788888888888    999999999999999876   788


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373          165 LNNKLIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV  235 (475)
Q Consensus       165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l  235 (475)
                      .+..|-..|.+    .|+.++|...|++..+. +...+..+-..|..    .+++++|+..|++..+.+   +...+..+
T Consensus       112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  188 (273)
T 1ouv_A          112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNA  188 (273)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            99999999999    99999999999987654 66788888888988    999999999999998865   56778888


Q ss_pred             HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 038373          236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM  291 (475)
Q Consensus       236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m  291 (475)
                      -..+..    .+++++|...++...+. +   +...+..|-..|.+    .|+.++|.+.|++.
T Consensus       189 g~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          189 GNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            888888    99999999999998843 3   25667788888888    99999999999876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=6.8e-09  Score=98.85  Aligned_cols=231  Identities=13%  Similarity=0.039  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV-KDVEL  165 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~  165 (475)
                      ..+...-..+.+.|++++|...|++.....|+     ...+..+...+...|++++|.+.+....+.    +-. ....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34555566788999999999999987665554     356788888999999999999999887543    222 23567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQ--------------------GADGLML  216 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~--------------------~~~A~~l  216 (475)
                      +..+...|...|++++|...|++..+     .+    ..+|..+...|...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            88889999999999999999987642     22    3488899999999999                    9999999


Q ss_pred             HHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 038373          217 FEQMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEAEEF  287 (475)
Q Consensus       217 ~~~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~~  287 (475)
                      +++....    +-.| ...++..+...+...|++++|...++...+...-.++    ..++..+...|.+.|++++|.+.
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9886542    2222 2347788888899999999999999887632111112    34788888999999999999999


Q ss_pred             HHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          288 VERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       288 ~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      +++.    +...+    ..++..+...+...|+.+.|...++...++
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9876    11122    567777888899999998887776655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.00  E-value=1.2e-08  Score=100.54  Aligned_cols=235  Identities=13%  Similarity=0.035  Sum_probs=179.2

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-  161 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-  161 (475)
                      ......+...-..+.+.|++++|...|++.....|+     ...|..+-..+...|++++|...++...+.    +-.| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            355667777778899999999999999987665554     246778888999999999999999887543    2222 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQ--------------------GAD  212 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~--------------------~~~  212 (475)
                      ...++..+...|...|++++|...|++..+     .+    ..+|+.+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            256788888999999999999999987653     23    4489999999999999                    999


Q ss_pred             HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHH
Q 038373          213 GLMLFEQMRKT----GPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIE  283 (475)
Q Consensus       213 A~~l~~~M~~~----g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~  283 (475)
                      |++.+++....    +-.|. ..++..+...+...|++++|...+++..+...-.++    ..+|..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999886542    21222 347888888999999999999999887632111122    3478889999999999999


Q ss_pred             HHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          284 AEEFVERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       284 A~~~~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      |.+.+++.    +-.++    ..+|..+-..|...|+++.|.+.++...++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999876    11122    567778888999999998887776665443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.99  E-value=8e-09  Score=105.25  Aligned_cols=192  Identities=12%  Similarity=0.019  Sum_probs=168.1

Q ss_pred             CCHHHHHHHHHHHHHcCCh-HHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKV-REAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~-~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      .+...|..+-..|...|++ ++|++.|++.....|+ ...|..+-.++.+.|++++|.+.|+...+.  .|+..++..|-
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence            4677888888899999999 9999999987765554 678999999999999999999999999876  47789999999


Q ss_pred             HHHHHc---------CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCC---
Q 038373          171 EMYGKC---------CNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN--------GQGADGLMLFEQMRKTGPHP---  227 (475)
Q Consensus       171 ~~~~k~---------g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~--------g~~~~A~~l~~~M~~~g~~p---  227 (475)
                      ..|.+.         |++++|...|++..+  | +...|..+...|...        |++++|++.|++..+.  .|   
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~  255 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKAS  255 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcc
Confidence            999999         999999999998763  3 678999999999999        9999999999999885  45   


Q ss_pred             -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          228 -DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       228 -d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                       +...|..+-.++...|++++|.+.|++..+.   .| +...+..+-..+...|++++|.+.+.++
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             7889999999999999999999999998843   44 4567888889999999999999887766

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.95  E-value=7.2e-09  Score=102.68  Aligned_cols=232  Identities=10%  Similarity=-0.035  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccC----C---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASA----S---AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDV  163 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~----~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~  163 (475)
                      ..|..+-..|...|++++|++.|++....    +   ....++..+-..+...|++++|...+.+..+.    +- ....
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            47888888999999999999999875431    1   23345778888899999999999999987654    21 2235


Q ss_pred             HHHHHHHHHHHHcCC-----------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCN-----------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADGLMLF  217 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~-----------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A~~l~  217 (475)
                      .++..+...|...|+                 +++|.+.|++..+     .    ...+|..+...|...|++++|++.|
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            578888999999999                 9999999887542     1    2348889999999999999999999


Q ss_pred             HHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhC---CCc-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038373          218 EQMRKTGP-HPD----KETFLVVFAACASAEAVKEGFLYFEIMKNDY---GIV-PGIEHYIAIIKVLGSAGHLIEAEEFV  288 (475)
Q Consensus       218 ~~M~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---g~~-p~~~~y~~li~~~~~~g~~~~A~~~~  288 (475)
                      ++..+..- .++    ..++..+...+...|++++|...+++.....   +-. ....++..+...|.+.|++++|.+.|
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            98765311 112    2378888999999999999999998876321   111 12567888999999999999999999


Q ss_pred             HhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          289 ERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       289 ~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      ++. .+   .++    ..+|..+...|...|+.+.|.+.++...++.
T Consensus       327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            887 11   112    3467778889999999988887777766553

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.94  E-value=1.8e-08  Score=95.81  Aligned_cols=233  Identities=9%  Similarity=-0.020  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccC----C--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASA----S--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD----  162 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~----~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----  162 (475)
                      ...|..+...|...|++++|.+.|++....    +  | ...++..+-..+...|++++|...+.+..+..- .++    
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            457888889999999999999998864331    1  1 234577888889999999999999988765311 122    


Q ss_pred             HHHHHHHHHHHHHcCC--------------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHH
Q 038373          163 VELNNKLIEMYGKCCN--------------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~--------------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A  213 (475)
                      ..++..+...|...|+                    +++|.+.|++..+     .    ...+|..+...|...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            4478888999999999                    9999999887542     1    234788899999999999999


Q ss_pred             HHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHH
Q 038373          214 LMLFEQMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEA  284 (475)
Q Consensus       214 ~~l~~~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A  284 (475)
                      .+.+++..+.    +..+ ...++..+...+...|++++|...++...+...-..+    ..++..+...|.+.|++++|
T Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999987652    1111 1337888889999999999999999887632111111    55778888999999999999


Q ss_pred             HHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          285 EEFVERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       285 ~~~~~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      .+.+++. ..   ..+    ..+|..+...|...|+.+.|.+.++...++.
T Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            9999876 11   112    4467778889999999988888777765543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.88  E-value=1.3e-07  Score=97.56  Aligned_cols=231  Identities=11%  Similarity=0.074  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHc----CCh----HHHHHHHHhcccCCC-CHHHHHHHHHHHhc-------cCCHH-------HHHHHH
Q 038373           95 LESLDVNLLSLCKE----GKV----REAIEYMGQDASASA-GYDVFSSLLDSCGN-------LKSIE-------MGKRVH  151 (475)
Q Consensus        95 ~~~~n~li~~~~~~----g~~----~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~-------~~~~~-------~a~~~~  151 (475)
                      ...|...+.-.-..    ++.    .+|..+|++.....| +...|......+.+       .|+++       +|..++
T Consensus       230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~  309 (530)
T 2ooe_A          230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY  309 (530)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence            35676666443332    222    377788887665334 55667777666654       68987       899999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373          152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NL-SSWHLMISGYAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      +...+.-.+.+...+..++..+.+.|++++|..+|++..+  | +. ..|..++..+.+.|+.++|.++|++..+..- .
T Consensus       310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~  388 (530)
T 2ooe_A          310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T  388 (530)
T ss_dssp             HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-C
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence            9988632344688999999999999999999999998763  4 33 5899999999999999999999999887521 1


Q ss_pred             CHHHHHHHHH-HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHH
Q 038373          228 DKETFLVVFA-ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPT--VEV  299 (475)
Q Consensus       228 d~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~t  299 (475)
                      +...|..... .+...|+.++|..+|+...+.   .| +...|..+++.+.+.|+.++|..+|++.    +..|+  ...
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l  465 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  465 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence            2233322222 233689999999999988744   34 4778999999999999999999999987    22332  568


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373          300 WEALRNFAQIHGDVELEDRAEELLGDLDPS  329 (475)
Q Consensus       300 ~~~li~~~~~~g~~~~a~~~~~~l~~~~~~  329 (475)
                      |...+......|+.+.+..+.+...+..|+
T Consensus       466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          466 WARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            999999999999999988888888776663

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.87  E-value=9.1e-08  Score=77.77  Aligned_cols=124  Identities=14%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      |..+...+.+.|++++|+.+|+++....| +...+..+...+...|++++|..+++.+.+.+ ..+..++..+...|.+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            44555555555666666665555433222 33444455555555555555555555554443 23344444555555555


Q ss_pred             CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          177 CNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       177 g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      |++++|.++|+++.+   .+..+|..+...|.+.|++++|...|+++..
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555544432   1334444455555555555555555544443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.86  E-value=5e-07  Score=99.68  Aligned_cols=208  Identities=11%  Similarity=0.019  Sum_probs=136.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      -+..+|..+-.++.+.|++++|.+-|.+.    -|...|.-++.+|.+.|++++|.+.+...++..  ++....+.++.+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence            34567777778888888888888888654    355677778888888888888888888776653  444455568888


Q ss_pred             HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF  252 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~  252 (475)
                      |+|.+++++.....   ..++...|..+-..|...|++++|..+|...         ..|..+...+++.|++++|.+.+
T Consensus      1177 YAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             HHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence            88888888644442   4556667777777788888888888888773         37788888888888888888777


Q ss_pred             HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373          253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD  327 (475)
Q Consensus       253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~  327 (475)
                      +...       +..+|..+-.+|...|++..|......+  .-+...+..++..|.+.|.+++|...++.-..++
T Consensus      1245 rKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A         1245 RKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred             HHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            6553       2344444444455555555555444332  2233344455555555666655554444444444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.85  E-value=3.6e-08  Score=96.94  Aligned_cols=232  Identities=9%  Similarity=-0.049  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhccc----CC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDAS----AS--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD----  162 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~----~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----  162 (475)
                      ...|..+...|...|++++|...|++...    .+  | ...++..+-..+...|++++|...+....+..- .++    
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            35788888899999999999999886432    11  2 134577788889999999999999988765310 112    


Q ss_pred             HHHHHHHHHHHHHcCC--------------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHH
Q 038373          163 VELNNKLIEMYGKCCN--------------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~--------------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A  213 (475)
                      ..++..+...|...|+                    +++|...|++..+     .    ...+|+.+...|...|++++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            4588888999999999                    9999999886542     1    234789999999999999999


Q ss_pred             HHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC-HHHHHHHHHHHHhcCCHHHH
Q 038373          214 LMLFEQMRKTG-PHPD----KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG-IEHYIAIIKVLGSAGHLIEA  284 (475)
Q Consensus       214 ~~l~~~M~~~g-~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~y~~li~~~~~~g~~~~A  284 (475)
                      ++.|++..+.. -.++    ..+|..+...+...|++++|...++...+.   .+-.+. ..++..+...|.+.|++++|
T Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  286 (406)
T 3sf4_A          207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  286 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            99999876521 1122    347888889999999999999999887632   111111 56788899999999999999


Q ss_pred             HHHHHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          285 EEFVERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       285 ~~~~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      .+.|++.    ...++    ..+|..+-..|...|+.+.|.+.++...++
T Consensus       287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999876    11122    557777888999999998887776665443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.85  E-value=9.5e-08  Score=88.62  Aligned_cols=214  Identities=9%  Similarity=0.029  Sum_probs=141.5

Q ss_pred             HHHHHHHHhcccCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 038373          112 REAIEYMGQDASAS-A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS------AFV-KDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       112 ~~A~~l~~~~~~~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~-p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      ++|++++.+..... | ...++..+-..+...|++++|...+.+..+.      +-. ....+++.+...|...|++++|
T Consensus        25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  104 (283)
T 3edt_B           25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA  104 (283)
T ss_dssp             HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence            44444444443211 2 2445788888889999999999999988764      222 2456788899999999999999


Q ss_pred             HHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCC
Q 038373          183 RKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEA  244 (475)
Q Consensus       183 ~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~  244 (475)
                      ...|++..+          | ...+|..+...|...|++++|++.|++..+.      +-.| +..++..+...+...|+
T Consensus       105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  184 (283)
T 3edt_B          105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK  184 (283)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence            999987642          1 2458889999999999999999999998764      2233 34578888999999999


Q ss_pred             HHHHHHHHHHHhhhC------CCcCCH-HHHHHHHHHHHhcCC------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 038373          245 VKEGFLYFEIMKNDY------GIVPGI-EHYIAIIKVLGSAGH------LIEAEEFVERMP-FEP-TVEVWEALRNFAQI  309 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~------g~~p~~-~~y~~li~~~~~~g~------~~~A~~~~~~m~-~~p-~~~t~~~li~~~~~  309 (475)
                      +++|..++++..+..      ...+.. ..|..+...+...+.      +.++...++..+ ..| ...+|..|...|..
T Consensus       185 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  264 (283)
T 3edt_B          185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR  264 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999998877320      122222 223333333333222      344444555553 122 34567778889999


Q ss_pred             cCCchHHHHHHHHHhc
Q 038373          310 HGDVELEDRAEELLGD  325 (475)
Q Consensus       310 ~g~~~~a~~~~~~l~~  325 (475)
                      .|+.+.|...++...+
T Consensus       265 ~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          265 QGKLEAAHTLEDCASR  280 (283)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999888777766544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.83  E-value=1.1e-07  Score=101.36  Aligned_cols=160  Identities=8%  Similarity=-0.021  Sum_probs=135.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +..+|+.|-..|.+.|++++|++.|++.....|+ ..+|+.+-.++.+.|++++|.+.|++..+.. .-+...|+.|-.+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3567888989999999999999999987765564 5678889999999999999999999998864 4467889999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEG  248 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a  248 (475)
                      |.+.|++++|.+.|++..+  | +...|+.+-..|.+.|++++|++.|++..+.  .| +...|..+...+...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999987653  4 6779999999999999999999999998874  45 466888999999999999998


Q ss_pred             HHHHHHHh
Q 038373          249 FLYFEIMK  256 (475)
Q Consensus       249 ~~~~~~m~  256 (475)
                      .+.+++..
T Consensus       165 ~~~~~kal  172 (723)
T 4gyw_A          165 DERMKKLV  172 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.83  E-value=1.5e-07  Score=92.66  Aligned_cols=224  Identities=8%  Similarity=0.024  Sum_probs=171.1

Q ss_pred             HHHHHcCChHHHHHHHHhcccC---CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC----CCCHHHHHHH
Q 038373          103 LSLCKEGKVREAIEYMGQDASA---SAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS--AF----VKDVELNNKL  169 (475)
Q Consensus       103 ~~~~~~g~~~~A~~l~~~~~~~---~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~----~p~~~~~~~L  169 (475)
                      ..+...|++++|++.|++....   .+|.    .+|..+-..+...|+++.|...+.+..+.  ..    .....+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3467899999999999876542   2332    45788888899999999999999988763  11    1124578888


Q ss_pred             HHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 038373          170 IEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHP-DKETFLVV  235 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~t~~~l  235 (475)
                      -..|...|++++|...|++..+     .+    ..+|+.+-..|...|++++|++.|++..+.    +..| ...++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            8999999999999999987652     22    248899999999999999999999998762    3323 45678899


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhhC---CCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 038373          236 FAACASAEAVKEGFLYFEIMKNDY---GIVPGIEHYIAIIKVLGSAGH---LIEAEEFVERMPFEPTV-EVWEALRNFAQ  308 (475)
Q Consensus       236 i~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~t~~~li~~~~  308 (475)
                      -..+.+.|++++|...++...+-.   +-......++.|-..|.+.|+   +++|..++++.+..|+. ..+..|-..|.
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~  350 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH  350 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999998876321   111123335678888889999   99999999999655544 35666778999


Q ss_pred             HcCCchHHHHHHHHHhcc
Q 038373          309 IHGDVELEDRAEELLGDL  326 (475)
Q Consensus       309 ~~g~~~~a~~~~~~l~~~  326 (475)
                      ..|+.+.|...++...++
T Consensus       351 ~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          351 ERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            999998887776665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.82  E-value=4.1e-08  Score=91.18  Aligned_cols=152  Identities=12%  Similarity=0.079  Sum_probs=116.6

Q ss_pred             ccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHH
Q 038373          140 NLKSIEMGKRVHELLRTS-------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMI  201 (475)
Q Consensus       140 ~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li  201 (475)
                      ..|++++|..++++..+.       .......++..+...|...|++++|...|++..+          + ...+|+.+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            345555555555555432       2223467888999999999999999999987652          1 345899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC-----CCcC-CHHHH
Q 038373          202 SGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY-----GIVP-GIEHY  268 (475)
Q Consensus       202 ~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~y  268 (475)
                      ..|...|++++|++.|++....      .-.| ...+|..+...+...|++++|..++++..+..     +-.| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999998764      1123 35678889999999999999999999887320     1123 35678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC
Q 038373          269 IAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..+...|.+.|++++|.++|++.
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            89999999999999999999876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.82  E-value=1.9e-07  Score=92.16  Aligned_cols=196  Identities=10%  Similarity=0.011  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhccc--C-CHHHHHHHHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN-TRLARKVFDQLRK--R-NLSSWHLMISGY  204 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~-~~~A~~~f~~m~~--~-~~~tyn~li~~~  204 (475)
                      ..|+.+-..+.+.|++++|.+.++..++.. .-+..+|+.+-..|.+.|+ +++|...|++..+  | +...|+.+-..|
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            347777778889999999999999999875 4568899999999999997 9999999998864  3 778999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh-cCCHH
Q 038373          205 AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS-AGHLI  282 (475)
Q Consensus       205 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~-~g~~~  282 (475)
                      ...|++++|+..|++..+... -+...|..+-.++.+.|++++|...++.+.+   +.| +...|+.+-..|.+ .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999998542 2678999999999999999999999999984   344 57788889899999 67768


Q ss_pred             HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CchHHHHHHHHHhccCCCC
Q 038373          283 EA-----EEFVERM-PFEP-TVEVWEALRNFAQIHG--DVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       283 ~A-----~~~~~~m-~~~p-~~~t~~~li~~~~~~g--~~~~a~~~~~~l~~~~~~~  330 (475)
                      +|     .+.|++. .+.| +...|+.+...+...|  +.+.|.+.++.+ +..++.
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~  308 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS  308 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence            87     4667666 3334 5778888888888877  576666666655 444444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.80  E-value=1.9e-07  Score=99.54  Aligned_cols=160  Identities=9%  Similarity=0.077  Sum_probs=139.2

Q ss_pred             CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHH
Q 038373          126 AG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMI  201 (475)
Q Consensus       126 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li  201 (475)
                      |+ ..+|+.|-..+.+.|++++|.+.|++.++.. .-+..+|+.|-.+|.+.|++++|...|++..+  | +...|+.+-
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44 4568999999999999999999999998874 44688999999999999999999999998753  4 577999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcC
Q 038373          202 SGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAG  279 (475)
Q Consensus       202 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g  279 (475)
                      ..|.+.|++++|++.|++..+.  .| +...|+.+-..+.+.|++++|.+.|++..+   +.|+ ...|..|...|...|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcc
Confidence            9999999999999999998874  45 567899999999999999999999999883   4564 678899999999999


Q ss_pred             CHHHHHHHHHhC
Q 038373          280 HLIEAEEFVERM  291 (475)
Q Consensus       280 ~~~~A~~~~~~m  291 (475)
                      ++++|.+.+++.
T Consensus       160 ~~~~A~~~~~ka  171 (723)
T 4gyw_A          160 DWTDYDERMKKL  171 (723)
T ss_dssp             CCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            999999888765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.80  E-value=3.6e-07  Score=86.50  Aligned_cols=192  Identities=9%  Similarity=-0.016  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhccc----CC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AG--YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-DVE  164 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~  164 (475)
                      .|+.....|...|++++|.+.|.+...    .+ |.  ..+|+.+-.+|.+.|++++|...++...+.    |-.. -..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            566667777788888888887765332    11 11  345777777788888888888877776543    2100 134


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHhccc--C---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----
Q 038373          165 LNNKLIEMYGKC-CNTRLARKVFDQLRK--R---N----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-----  229 (475)
Q Consensus       165 ~~~~Li~~~~k~-g~~~~A~~~f~~m~~--~---~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-----  229 (475)
                      +++.+-..|.+. |++++|...|++..+  |   +    ..+|+.+...|.+.|++++|+..|++..+.......     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            677777777775 888888877776542  1   1    346777777788888888888888777764322221     


Q ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH------HHHHHHHHHH--hcCCHHHHHHHHHhC
Q 038373          230 -ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE------HYIAIIKVLG--SAGHLIEAEEFVERM  291 (475)
Q Consensus       230 -~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~------~y~~li~~~~--~~g~~~~A~~~~~~m  291 (475)
                       .+|..+..++...|++++|...|+...   .+.|+..      .+..|+..|.  ..+++++|.+.|+++
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence             145666667777788888888777765   2334321      2334455554  445677777777766

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.77  E-value=5.1e-07  Score=73.22  Aligned_cols=123  Identities=11%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG  208 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g  208 (475)
                      ..+...+...|++++|..+++.+.+.. ..+..++..+...|.+.|++++|..+|+++.+   .+...|..+...|...|
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            334444444455555555555544432 22344444444444444455555544444331   13334444444444444


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          209 QGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       209 ~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ++++|.++|+++.... ..+..++..+...+...|++++|...++.+.
T Consensus        84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4444444444444322 1123344444444444444444444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.73  E-value=2.7e-07  Score=86.98  Aligned_cols=164  Identities=12%  Similarity=0.104  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------C-
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-------R-  192 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~-  192 (475)
                      ..++..+...+...|++++|..+++++.+.       .......++..+...|...|++++|...|++..+       + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            345788888899999999999999998873       2234567788899999999999999999987652       1 


Q ss_pred             ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC---
Q 038373          193 ---NLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY---  259 (475)
Q Consensus       193 ---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---  259 (475)
                         ...+|..+...|...|++++|.+.|++..+.      +-.| ...++..+...+...|++++|.++++...+..   
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence               3458888999999999999999999988764      3233 34567888888899999999999988876320   


Q ss_pred             --CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          260 --GIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       260 --g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                        +-.| ...++..+...|.+.|++++|.++|++.
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              1123 3456778888899999999999888776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.73  E-value=7.9e-07  Score=80.40  Aligned_cols=193  Identities=8%  Similarity=-0.009  Sum_probs=146.5

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS  202 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~  202 (475)
                      .|+..+...-..+...|++++|...|+...+..-.++...+..+..+|.+.|++++|.+.|++..+  | +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            466778888888899999999999999998876337788888899999999999999999998763  3 5568999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHH
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHPD-K-------ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAI  271 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~l  271 (475)
                      .|...|++++|++.|++..+.  .|+ .       ..|..+-..+...|++++|.+.|+...   ...|+   ...|..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence            999999999999999998874  343 3       457777778889999999999999988   34565   4566677


Q ss_pred             HHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          272 IKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      -..|...|+.     +++++   + ..+...|..+..  ...+.++.|...++...++.|+..
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHH-----HHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCH
Confidence            7777665543     23332   2 234555555443  334567778888888888877764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.73  E-value=1.1e-06  Score=79.40  Aligned_cols=196  Identities=8%  Similarity=-0.028  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      .|...|..+-..+.+.|++++|++.|++.....  ++...+..+-.++...|++++|.+.++...+.. +.+..++..+-
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            456778888888999999999999999866644  577777778888999999999999999998865 34677899999


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NL-------SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD---KETFLVVFA  237 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~-------~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~t~~~li~  237 (475)
                      ..|.+.|++++|...|++..+  | +.       ..|..+-..+...|++++|++.|++..+  +.|+   ...|..+-.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence            999999999999999998763  3 34       4688888889999999999999999887  4566   345666666


Q ss_pred             HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 038373          238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVW  300 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~  300 (475)
                      .+..     .+..+++.+..- + ..+...|..+.  ....|.+++|...|++. ...|+....
T Consensus       162 ~~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~  216 (228)
T 4i17_A          162 LFYN-----NGADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEI  216 (228)
T ss_dssp             HHHH-----HHHHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHH-----HHHHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence            6644     344555665522 2 22344555544  34456789999999887 444554433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.73  E-value=1.9e-06  Score=84.47  Aligned_cols=222  Identities=9%  Similarity=0.037  Sum_probs=168.0

Q ss_pred             HHHHcCChHHHHHHHHhcccC---CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASA---SAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----A-FVK-DVELNNKLI  170 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~---~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~~~~~Li  170 (475)
                      .+...|++++|+..|++....   .+|    ..++..+-..+...|+++.|...+.+..+.    + ..+ ...+++.|-
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            357899999999999875542   133    235778888899999999999999887653    1 111 256788889


Q ss_pred             HHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPDKETFLVVFA  237 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~~t~~~li~  237 (475)
                      ..|...|++++|...|++..+     .+    ..+|+.|-..|...|++++|++.|++..+.    +......++..+-.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            999999999999999987642     22    347888999999999999999999998761    22223678888999


Q ss_pred             HHHccCCHHHHHHHHHHHhhhCCC---cCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc
Q 038373          238 ACASAEAVKEGFLYFEIMKNDYGI---VPGIEHYIAIIKVLGSAGH---LIEAEEFVERMPFEPTV-EVWEALRNFAQIH  310 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~g~---~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~t~~~li~~~~~~  310 (475)
                      .+.+.|+.++|...++...+-..-   ......++.+-..|...|+   +++|..++++.+..|+. ..+..|-..|...
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~  349 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS  349 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence            999999999999999987743221   1123456677777888888   99999999998644444 3455677789999


Q ss_pred             CCchHHHHHHHHHhc
Q 038373          311 GDVELEDRAEELLGD  325 (475)
Q Consensus       311 g~~~~a~~~~~~l~~  325 (475)
                      |+.+.|...++...+
T Consensus       350 g~~~~A~~~~~~al~  364 (378)
T 3q15_A          350 CHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999888777665543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.69  E-value=2.2e-05  Score=79.88  Aligned_cols=220  Identities=7%  Similarity=-0.088  Sum_probs=127.3

Q ss_pred             CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373           93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE  164 (475)
Q Consensus        93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~  164 (475)
                      .|...+..|-..|..    .+++++|++.|++....+ +...+..|-..|..    .++.++|.+.|+...+.|   +..
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  112 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ  112 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            344555555555655    667777777776644432 34455555555555    667777777777766654   455


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373          165 LNNKLIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV  235 (475)
Q Consensus       165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l  235 (475)
                      .+..|-.+|..    .++.++|.+.|++..+. +...+..|-..|..    .++.++|++.|++..+.|   +...+..|
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~L  189 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            55666666666    56777777777665543 44556666666665    566677777776666654   45555555


Q ss_pred             HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038373          236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFA  307 (475)
Q Consensus       236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~  307 (475)
                      -..+..    .++.++|.+.|+...+. |   +...+..|-..|..    .++.++|.++|++.--..+...+..|-..|
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y  265 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555555    66666776666666532 3   33445555555554    566666666666652123444554454445


Q ss_pred             HH----cCCchHHHHHHHHH
Q 038373          308 QI----HGDVELEDRAEELL  323 (475)
Q Consensus       308 ~~----~g~~~~a~~~~~~l  323 (475)
                      ..    .++.+.|.+.++..
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHH
Confidence            44    45554444444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.69  E-value=2.1e-05  Score=80.00  Aligned_cols=223  Identities=11%  Similarity=-0.006  Sum_probs=175.1

Q ss_pred             CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373           93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE  164 (475)
Q Consensus        93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~  164 (475)
                      -+...+..|-..|..    .++.++|++.|++....+ +...+..|-..+..    .+++++|.+.|+...+.|   +..
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            456677778788888    899999999999876644 55666667777766    789999999999998876   577


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373          165 LNNKLIEMYGK----CCNTRLARKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV  235 (475)
Q Consensus       165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l  235 (475)
                      .+..|-.+|..    .++.++|.+.|++..+ .+...+..|-..|..    .++.++|++.|++..+.|   +...+..+
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  225 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL  225 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            78888888887    7899999999987764 477788888888888    899999999999988865   56677777


Q ss_pred             HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038373          236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFA  307 (475)
Q Consensus       236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~  307 (475)
                      -..+..    .++.++|..+|+...+. |   +...+..|-..|..    .++.++|.++|++.-...+...+..|-..|
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y  301 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY  301 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777765    78999999999988743 3   34556666667777    899999999999872234667777777777


Q ss_pred             HHc-----CCchHHHHHHHHHhcc
Q 038373          308 QIH-----GDVELEDRAEELLGDL  326 (475)
Q Consensus       308 ~~~-----g~~~~a~~~~~~l~~~  326 (475)
                      ...     ++.+.|...++...+.
T Consensus       302 ~~~~~g~~~~~~~A~~~~~~a~~~  325 (490)
T 2xm6_A          302 DKGAEGVAKNREQAISWYTKSAEQ  325 (490)
T ss_dssp             HHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCcCCHHHHHHHHHHHHhc
Confidence            776     7887777666665544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.69  E-value=2.4e-06  Score=83.42  Aligned_cols=228  Identities=9%  Similarity=-0.046  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccC---CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-C
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASA---SAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV--K-D  162 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~---~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~  162 (475)
                      .++.+-..+...|++++|.+.+++....   ..+.    .++..+-..+...|++++|.+.+++..+.    |..  | .
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            5666777788999999999998864431   1233    23556667788899999999999887653    322  3 2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD--KETF  232 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~  232 (475)
                      ..+++.+-..|...|++++|...+++..+  +      ...+|..+...+...|++++|...+++.....-.++  ....
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  214 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  214 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence            45667788889999999999999987542  1      235788888899999999999999998875321221  1111


Q ss_pred             H----HHHHHHHccCCHHHHHHHHHHHhhhCCCcC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH
Q 038373          233 L----VVFAACASAEAVKEGFLYFEIMKNDYGIVP---GIEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPTVE  298 (475)
Q Consensus       233 ~----~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~  298 (475)
                      .    ..+..+...|+.++|...++..... ...+   ....+..+...+...|+.++|.+.+++.       +..++..
T Consensus       215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  293 (373)
T 1hz4_A          215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN  293 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence            1    2334477899999999999887732 2211   1234667788899999999999998876       2112222


Q ss_pred             -HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          299 -VWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       299 -t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                       .+..+-..+...|+.+.|...++...+
T Consensus       294 ~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          294 RNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             455556678889999877766655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.69  E-value=2.3e-06  Score=88.02  Aligned_cols=195  Identities=12%  Similarity=0.062  Sum_probs=154.7

Q ss_pred             CCHHHHHHHHHHHHH-------cCChH-------HHHHHHHhccc-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCK-------EGKVR-------EAIEYMGQDAS-ASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRT  156 (475)
Q Consensus        93 ~~~~~~n~li~~~~~-------~g~~~-------~A~~l~~~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  156 (475)
                      .+...|..+...+.+       .|+++       +|.++|++... ..|+ ...|..+...+.+.|++++|..+|+.+.+
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            356678777777765       79987       99999999875 4564 66788888999999999999999999998


Q ss_pred             cCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 038373          157 SAFVKD--VELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMIS-GYAANGQGADGLMLFEQMRKTGPHP-DK  229 (475)
Q Consensus       157 ~g~~p~--~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~-~~~~~g~~~~A~~l~~~M~~~g~~p-d~  229 (475)
                      .  .|+  ..+|..++..+.+.|++++|.++|++..+.   +...|-.... .|...|+.++|..+|++..+.  .| +.
T Consensus       350 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~  425 (530)
T 2ooe_A          350 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIP  425 (530)
T ss_dssp             S--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCH
T ss_pred             c--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCH
Confidence            5  453  358999999999999999999999987642   2222222221 234689999999999988774  34 57


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          230 ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       230 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..|..++..+.+.|+.++|..+|+.........|+  ...|...+....+.|+.+.+.++++++
T Consensus       426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            78999999999999999999999998854333443  457888899899999999999999887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=6.5e-06  Score=80.27  Aligned_cols=224  Identities=9%  Similarity=-0.048  Sum_probs=158.1

Q ss_pred             HHHHHHHcCChHHHHHHHHhcccCCC--CHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 038373          101 NLLSLCKEGKVREAIEYMGQDASASA--GYD----VFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD----VELNNKL  169 (475)
Q Consensus       101 li~~~~~~g~~~~A~~l~~~~~~~~p--~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~L  169 (475)
                      +-..+...|++++|...+++.....|  +..    +++.+-..+...|++++|.+.+.+..+..- ..+    ..+++.+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            33456689999999999987544222  222    455666778889999999999988765310 112    2346777


Q ss_pred             HHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 038373          170 IEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH--P--DKETFLV  234 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--p--d~~t~~~  234 (475)
                      -..|...|++++|...|++..+          + ...+++.+-..|...|++++|...+++.....-.  +  ...+|..
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  179 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  179 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence            8889999999999999987642          1 1246777888899999999999999998764221  1  2457788


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 038373          235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYI-----AIIKVLGSAGHLIEAEEFVERM-PFEPT-----VEVWEA  302 (475)
Q Consensus       235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~  302 (475)
                      +...+...|++++|...+++.... .-.++. ..+.     .++..+...|+.++|.+.+++. ...|.     ...+..
T Consensus       180 la~~~~~~g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          180 LIQCSLARGDLDNARSQLNRLENL-LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH-HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            888899999999999999987632 111111 1121     3345578999999999999988 22221     335667


Q ss_pred             HHHHHHHcCCchHHHHHHHHHhc
Q 038373          303 LRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       303 li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                      +...+...|+.+.|...++...+
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            77888899999877776665533

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.68  E-value=7e-07  Score=84.51  Aligned_cols=202  Identities=9%  Similarity=-0.001  Sum_probs=144.7

Q ss_pred             ChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 038373          110 KVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVKD-VELNNKLIEMYGKCCNTRLARK  184 (475)
Q Consensus       110 ~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~Li~~~~k~g~~~~A~~  184 (475)
                      ++++|.+.|.+.             ...+...|++++|...|....+.    |-.++ ..+|+.+-.+|.+.|++++|..
T Consensus        32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   98 (292)
T 1qqe_A           32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD   98 (292)
T ss_dssp             HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            366666666654             44567889999999999887653    32222 5689999999999999999999


Q ss_pred             HHHhccc-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHH
Q 038373          185 VFDQLRK-----RN----LSSWHLMISGYAAN-GQGADGLMLFEQMRKTGPH-PD----KETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       185 ~f~~m~~-----~~----~~tyn~li~~~~~~-g~~~~A~~l~~~M~~~g~~-pd----~~t~~~li~~~~~~g~~~~a~  249 (475)
                      .|++..+     .+    ..+|+.+-..|... |++++|++.|++..+.... .+    ..+|+.+...+.+.|++++|.
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            9987652     12    35899999999996 9999999999987763110 01    357888999999999999999


Q ss_pred             HHHHHHhhhCCCcCCH------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHHHcCCchHH
Q 038373          250 LYFEIMKNDYGIVPGI------EHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE------VWEALRNFAQIHGDVELE  316 (475)
Q Consensus       250 ~~~~~m~~~~g~~p~~------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------t~~~li~~~~~~g~~~~a  316 (475)
                      ..|+...+. ......      ..|..+...|...|++++|...|++. .+.|+..      .+..|+.++ ..++.+..
T Consensus       179 ~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~  256 (292)
T 1qqe_A          179 DIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTH
T ss_pred             HHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHH
Confidence            999998843 322221      15677788899999999999999998 4455432      234445555 34565555


Q ss_pred             HHHHHHHhcc
Q 038373          317 DRAEELLGDL  326 (475)
Q Consensus       317 ~~~~~~l~~~  326 (475)
                      .++.+.+...
T Consensus       257 ~~A~~~~~~~  266 (292)
T 1qqe_A          257 SEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHhccC
Confidence            6676666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.60  E-value=8.1e-06  Score=90.32  Aligned_cols=196  Identities=10%  Similarity=0.043  Sum_probs=158.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      ..|...|..++.++.+.|++++|.+.|.......++....+.+..+|++.+++++...+.    +   .++...|..+-+
T Consensus      1131 AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A         1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred             cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence            477788999999999999999999999875554455545556999999999998644443    2   456777888999


Q ss_pred             HHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      .|...|++++|..+|...     ..|..+...|++.|++++|.+.+++-      -|..+|.-+-.+|...|++..|...
T Consensus      1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999999999999999985     48999999999999999999999875      4678999999999999999999886


Q ss_pred             HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038373          252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHG  311 (475)
Q Consensus       252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g  311 (475)
                      ...+.      .+...+..++..|-+.|.+++|..+++.- +..+ ....|+-|-..|++..
T Consensus      1273 gl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1273 GLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            65432      24556789999999999999999999765 5443 3456666666777653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.59  E-value=7.4e-06  Score=77.41  Aligned_cols=177  Identities=14%  Similarity=0.084  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373          147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNLSSWHLMISGYAANGQGADGLMLFEQMR  221 (475)
Q Consensus       147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~  221 (475)
                      +...+++..+.+ .++..++..+-.+|...|++++|++++.+-..     -+...+-.++..|.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            556666666555 45666666777788888888888888887633     245577788888888888888888888887


Q ss_pred             HcCCCC-----CHHHHHHHHHHHH--c--cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038373          222 KTGPHP-----DKETFLVVFAACA--S--AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-  291 (475)
Q Consensus       222 ~~g~~p-----d~~t~~~li~~~~--~--~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-  291 (475)
                      +.  .|     +..+...|..++.  .  .++..+|..+|+++.++   .|+..+...|++++.+.|++++|++.++.+ 
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            63  56     3555555555532  2  23788888888888743   344334455556788888888888888765 


Q ss_pred             CC-----------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          292 PF-----------EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       292 ~~-----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ..           ..|..+.-.+|..+...|+  .+.+.++.+.+..|+..
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            21           2355555445554445665  56777777877777764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.56  E-value=2.1e-06  Score=81.10  Aligned_cols=197  Identities=14%  Similarity=0.085  Sum_probs=139.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 038373           91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKDVELNNK  168 (475)
Q Consensus        91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~  168 (475)
                      ..|....+..+... ...+    |+..|++....+ ++..++..+-.++...|++++|.+++...+..|- .-+...+-.
T Consensus        67 ~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l  141 (310)
T 3mv2_B           67 TSKLGKVLDLYVQF-LDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL  141 (310)
T ss_dssp             SSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-hccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence            34554444444433 3322    677777765543 6777777788889999999999999999876653 246778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhccc--CC-----HHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRK--RN-----LSSWHLMISG--YAANG--QGADGLMLFEQMRKTGPHPDKETFLVVFA  237 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~--~~-----~~tyn~li~~--~~~~g--~~~~A~~l~~~M~~~g~~pd~~t~~~li~  237 (475)
                      ++..|.+.|+.+.|.+.+++|.+  ||     -.+..-|..+  ....|  +..+|+.+|+++.+.  .|+..+-..++.
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln  219 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLN  219 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHH
Confidence            89999999999999999999974  41     3455556655  33334  899999999998764  466555556666


Q ss_pred             HHHccCCHHHHHHHHHHHhhhC-C------CcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373          238 ACASAEAVKEGFLYFEIMKNDY-G------IVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT  296 (475)
Q Consensus       238 ~~~~~g~~~~a~~~~~~m~~~~-g------~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~  296 (475)
                      ++.+.|++++|++.++.+.+.+ .      ..| |..+...+|......|+  +|.++++++ ...|+
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            8899999999999999776421 0      124 45556455555555676  889999888 33454

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.55  E-value=2.5e-06  Score=78.89  Aligned_cols=164  Identities=14%  Similarity=0.046  Sum_probs=109.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-C-CCHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-V-KDVELN  166 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~-p~~~~~  166 (475)
                      .+...+-.+-..+.+.|++++|...|++.....|+    ...+..+-.++.+.|++++|...|+...+..- . .....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            45556666777788999999999999987765554    45677788888899999999999999887631 1 224567


Q ss_pred             HHHHHHHHH--------cCCHHHHHHHHHhccc--CC-HHHH-----------------HHHHHHHHhcCChHHHHHHHH
Q 038373          167 NKLIEMYGK--------CCNTRLARKVFDQLRK--RN-LSSW-----------------HLMISGYAANGQGADGLMLFE  218 (475)
Q Consensus       167 ~~Li~~~~k--------~g~~~~A~~~f~~m~~--~~-~~ty-----------------n~li~~~~~~g~~~~A~~l~~  218 (475)
                      ..+..+|.+        .|++++|...|++..+  |+ ...+                 -.+...|.+.|++++|+..|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            777778888        8999999999988763  32 2333                 333555666666666666666


Q ss_pred             HHHHcCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHh
Q 038373          219 QMRKTGPHP--DKETFLVVFAACASA----------EAVKEGFLYFEIMK  256 (475)
Q Consensus       219 ~M~~~g~~p--d~~t~~~li~~~~~~----------g~~~~a~~~~~~m~  256 (475)
                      +..+.....  ....+..+..++...          |++++|...++.+.
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~  222 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL  222 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence            665532111  123444455555544          56666666666655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.55  E-value=6.4e-06  Score=82.88  Aligned_cols=212  Identities=10%  Similarity=0.014  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhccc---------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDAS---------ASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS-----  157 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~---------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----  157 (475)
                      .....||.|-..+...|+.++|++.|++...         ..| ...+|+.+-.+|...|++++|...++...+.     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            3456799998899999999999999876322         123 3567999999999999999999999887652     


Q ss_pred             C-CC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHhcc--cC-CHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCC
Q 038373          158 A-FV-KDVELNNKLIEMYGKCC--NTRLARKVFDQLR--KR-NLSSWHLMISG---YAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       158 g-~~-p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~--~~-~~~tyn~li~~---~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      + .. ....+++.+-.++.+.|  ++++|...|++..  .| +...|..+...   +...|+.++|++.|++..+.. ..
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence            1 11 23566766666666654  6999999999875  34 44455555444   445688889999998887643 22


Q ss_pred             CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373          228 DKETFLVVFAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE  301 (475)
Q Consensus       228 d~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~  301 (475)
                      +..++..+...+..    .|+.++|.++++..... . ..+...+..+-..|.+.|++++|.+.|++. ...| +..+|.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-A-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-C-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-C-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence            45566655555544    46778899999887733 2 224667888999999999999999999987 3344 455565


Q ss_pred             HHHHHH
Q 038373          302 ALRNFA  307 (475)
Q Consensus       302 ~li~~~  307 (475)
                      .+-..|
T Consensus       286 ~lg~~y  291 (472)
T 4g1t_A          286 QIGCCY  291 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.53  E-value=6.5e-06  Score=80.73  Aligned_cols=193  Identities=10%  Similarity=-0.044  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-  161 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-  161 (475)
                      ..+|+.+-..|...|++++|++.+.+...   ..++     ..+++.+-..+...|++++|...+....+.    +-.+ 
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            45788888899999999999999886433   1122     245788888899999999999999888654    2111 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPD  228 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd  228 (475)
                      ...+++.|-..|.+.|++++|.+.|++..+        + ...+|..+...|.+.|++++|.+.|++..+.    +-...
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  302 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY  302 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            124788899999999999999999987654        2 2447999999999999999999999987653    11112


Q ss_pred             HHHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          229 KETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       229 ~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ...+..+-..+...|+   +++|..+++..    +..| ....+..|-..|.+.|+.++|.+.|++.
T Consensus       303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3346677778888888   77777777655    3333 3456778899999999999999998865

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.49  E-value=3.4e-06  Score=89.75  Aligned_cols=183  Identities=13%  Similarity=0.060  Sum_probs=142.7

Q ss_pred             hccCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373          139 GNLKSIEMGKRVHELLR--------TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN  207 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~  207 (475)
                      ...|++++|.+.+++..        +.. ..+...+..+...|.+.|++++|.+.|++..+  | +...|..+-..|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67899999999999887        332 44667888888999999999999999998763  3 677899999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH
Q 038373          208 GQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       208 g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~  285 (475)
                      |++++|++.|++..+.  .| +...|..+-.++.+.|++++ .+.|+...+   ..| +...|..+-..|.+.|++++|.
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999998874  34 56678888889999999999 999988873   344 4677888889999999999999


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----chHHHHHHHHHhccCC
Q 038373          286 EFVERM-PFEPT-VEVWEALRNFAQIHGD-----VELEDRAEELLGDLDP  328 (475)
Q Consensus       286 ~~~~~m-~~~p~-~~t~~~li~~~~~~g~-----~~~a~~~~~~l~~~~~  328 (475)
                      +.|++. ...|+ ...|..+..++...|+     .+...++.+.+..+.+
T Consensus       555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  604 (681)
T 2pzi_A          555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP  604 (681)
T ss_dssp             HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred             HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence            999998 56676 4566666666655554     3455667777766643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.48  E-value=6.3e-06  Score=73.59  Aligned_cols=181  Identities=13%  Similarity=0.050  Sum_probs=101.4

Q ss_pred             HHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373          101 NLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT  179 (475)
Q Consensus       101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~  179 (475)
                      .-..+.+.|++++|+..|++.....|+... |.. . +  .....               ......++.+-.+|.+.|++
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~-~--~~~~~---------------~~~~~~~~~lg~~~~~~g~~   70 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW-T-N--VDKNS---------------EISSKLATELALAYKKNRNY   70 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH-H-H--SCTTS---------------HHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-h-h--hcchh---------------hhhHHHHHHHHHHHHHCCCH
Confidence            334567888889998888887664454322 222 0 0  00000               01122234466677777777


Q ss_pred             HHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH--HHHHHHHH
Q 038373          180 RLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAV--KEGFLYFE  253 (475)
Q Consensus       180 ~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~--~~a~~~~~  253 (475)
                      ++|...|++..+  | +...|..+-..|...|++++|+..|++..+.  .| +..+|..+-..+...|..  +.+...+.
T Consensus        71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            777777776542  3 5667777777777777777777777777664  34 455666666665544432  33344443


Q ss_pred             HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373          254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRN  305 (475)
Q Consensus       254 ~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~  305 (475)
                      ...   ...|....+..+-.++...|++++|...|++. ...|+......|..
T Consensus       149 ~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          149 KLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            332   12222222223333455567777888777776 56677665555433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.48  E-value=1.7e-05  Score=74.67  Aligned_cols=160  Identities=8%  Similarity=-0.075  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHH-HHHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNLSSWHL-MISGYA  205 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~-li~~~~  205 (475)
                      ..+..+-..+...|++++|.+.++...+.. +-+...+..|...|.+.|+.++|..+|++...  |+...+.. ....+.
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            445566666777888888888888887764 44667788888888888888888888887753  54432222 223366


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373          206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~  285 (475)
                      +.|+.++|++.|++..... ..+...+..+-..+...|++++|...+..+.+...-..+...+..|...|...|+.++|.
T Consensus       197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            6777788888888777643 225667777888888888888888888887743111112556778888888888888887


Q ss_pred             HHHHh
Q 038373          286 EFVER  290 (475)
Q Consensus       286 ~~~~~  290 (475)
                      ..|++
T Consensus       276 ~~~r~  280 (287)
T 3qou_A          276 SXYRR  280 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.44  E-value=5.4e-06  Score=88.22  Aligned_cols=181  Identities=9%  Similarity=-0.020  Sum_probs=147.8

Q ss_pred             HHcCChHHHHHHHHhcc--------cCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373          106 CKEGKVREAIEYMGQDA--------SASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus       106 ~~~g~~~~A~~l~~~~~--------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      ...|++++|++.|++..        ...| +...+..+-.++.+.|++++|.+.++...+.. ..+...|..+-.+|.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            67899999999999876        4334 44668888889999999999999999998865 45788999999999999


Q ss_pred             CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038373          177 CNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFE  253 (475)
Q Consensus       177 g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~  253 (475)
                      |++++|.+.|++..+  | +...|..+-..|.+.|++++ ++.|++..+... -+...|..+-.++.+.|++++|.+.|+
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999998763  4 67799999999999999999 999999887532 256789999999999999999999999


Q ss_pred             HHhhhCCCcCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHhCC
Q 038373          254 IMKNDYGIVPG-IEHYIAIIKVLGSAGH--------LIEAEEFVERMP  292 (475)
Q Consensus       254 ~m~~~~g~~p~-~~~y~~li~~~~~~g~--------~~~A~~~~~~m~  292 (475)
                      +..   .+.|+ ...|..+..+|...|+        +++|.+.+..+.
T Consensus       559 ~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          559 EVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             TSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             hhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            887   45665 4566677777766444        777888888773

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.43  E-value=1.4e-05  Score=78.25  Aligned_cols=193  Identities=13%  Similarity=0.047  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-  161 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-  161 (475)
                      ...|+.+-..|...|++++|+..+.+...   ..++     ..+++.+-..+...|++++|.+.+....+.    |-.+ 
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45678888889999999999998876432   1122     345778888899999999999999887653    2111 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-H
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK-------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP---HPD-K  229 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~---~pd-~  229 (475)
                      ...+++.|-..|.+.|++++|...|++..+       | ...++..+...|.+.|++++|...+++..+..-   .|. .
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  300 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK  300 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            235788889999999999999999987653       2 345888899999999999999999999877421   122 3


Q ss_pred             HHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          230 ETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       230 ~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..+..+-..+...++   +++|...++..    +..|+ ...+..|-..|.+.|+.++|.+.|++.
T Consensus       301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          301 ELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456666666777788   77777777653    33333 345678889999999999999999865

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.43  E-value=1.6e-05  Score=70.62  Aligned_cols=126  Identities=10%  Similarity=-0.074  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...+..+-..+.+.|++++|++.|++...  |+...|..+-..+.+.|++++|...++...+.. ..+...+..+-.+|.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34455666678889999999999988764  788888888888899999999999999888765 456778888888899


Q ss_pred             HcCCHHHHHHHHHhccc--C-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          175 KCCNTRLARKVFDQLRK--R-N----------------LSSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~----------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      +.|++++|...|++..+  | +                ...|..+...|.+.|++++|.+.|++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999988887653  1 2                267888888888888888888888887764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.42  E-value=3.7e-05  Score=77.21  Aligned_cols=200  Identities=11%  Similarity=-0.045  Sum_probs=143.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS--------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-------  191 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-------  191 (475)
                      ....||.|-..+...|+.++|.+.|++..+.        .-.....+|+.+-..|...|++++|...|++..+       
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3456999989999999999999999877542        1233467899999999999999999999987642       


Q ss_pred             ---C-CHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHhhhCCC
Q 038373          192 ---R-NLSSWHLMISGYAAN--GQGADGLMLFEQMRKTGPHPDK-ETFLVVFAA---CASAEAVKEGFLYFEIMKNDYGI  261 (475)
Q Consensus       192 ---~-~~~tyn~li~~~~~~--g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~---~~~~g~~~~a~~~~~~m~~~~g~  261 (475)
                         + ...+|+.+-.++...  +++++|++.|++..+.  .|+. ..+..+..+   +...++.++|.+.++...+   +
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l  204 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L  204 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence               1 234677666666654  4689999999998874  4543 344444333   4456777888888887763   3


Q ss_pred             cC-CHHHHHHHHHHHHh----cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          262 VP-GIEHYIAIIKVLGS----AGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       262 ~p-~~~~y~~li~~~~~----~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .| +...+..+-..+.+    .|+.++|.+++++. . ...+...|..+-..|...|+.+.|...++...+..|+..
T Consensus       205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence            44 34555555544544    46788999999876 2 234677888899999999999999988888888887764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.40  E-value=0.00011  Score=69.81  Aligned_cols=224  Identities=12%  Similarity=0.068  Sum_probs=172.8

Q ss_pred             HHHHHcC-ChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 038373          103 LSLCKEG-KVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK--SIEMGKRVHELLRTSAFVKDVELNNKLIEMY----G  174 (475)
Q Consensus       103 ~~~~~~g-~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~----~  174 (475)
                      .+..+.| ..++|++++.......|+..| |+.--..+...+  +++++.++++.+.+.. .-+..+++---..+    .
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME  118 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence            3444455 457999999998877787776 676666677777  9999999999998865 34555565544444    5


Q ss_pred             Hc---CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--
Q 038373          175 KC---CNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGA--DGLMLFEQMRKTGPHPDKETFLVVFAACASAEA--  244 (475)
Q Consensus       175 k~---g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~--~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~--  244 (475)
                      +.   ++++++..+++.+.+   +|-.+|+.-...+.+.|.++  ++++.+++|.+.... |...|+.--..+.+.+.  
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred             hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence            55   789999999998874   47789999888888899988  999999999987643 78888877777777776  


Q ss_pred             ----HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCch
Q 038373          245 ----VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE-AEEFVERM-PF----EPTVEVWEALRNFAQIHGDVE  314 (475)
Q Consensus       245 ----~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~t~~~li~~~~~~g~~~  314 (475)
                          ++++.+.++.+... .. -|...|+-+-..+.+.|+..+ +.++.++. ..    ..+...+..+...|.+.|+.+
T Consensus       198 ~~~~~~eEl~~~~~aI~~-~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~  275 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVK-CP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN  275 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred             hhhhHHHHHHHHHHHHHh-CC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence                88999999888843 22 267788888888889888544 66677776 21    347788999999999999999


Q ss_pred             HHHHHHHHHhc-cCCCC
Q 038373          315 LEDRAEELLGD-LDPSK  330 (475)
Q Consensus       315 ~a~~~~~~l~~-~~~~~  330 (475)
                      +|.++++.+.+ .+|-+
T Consensus       276 ~A~~~~~~l~~~~Dpir  292 (306)
T 3dra_A          276 ESRTVYDLLKSKYNPIR  292 (306)
T ss_dssp             HHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHhccChHH
Confidence            99999998875 66554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.40  E-value=1.4e-05  Score=70.97  Aligned_cols=131  Identities=8%  Similarity=-0.087  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                      .+..+-..|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..+.. ..+...|..+-..+...|+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            345566677788888888888888877788888888888888888888888888877653 2356678888888888888


Q ss_pred             HHHHHHHHHHHhhhCC-------------CcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373          245 VKEGFLYFEIMKNDYG-------------IVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT  296 (475)
Q Consensus       245 ~~~a~~~~~~m~~~~g-------------~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~  296 (475)
                      +++|.+.|+...+...             ..| ....+..+-..|.+.|+.++|.+.|++. ...|+
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            8888888888774211             112 1256677777888888888888888776 44454

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.36  E-value=2.6e-05  Score=69.57  Aligned_cols=127  Identities=9%  Similarity=0.040  Sum_probs=95.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHH
Q 038373          199 LMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLG  276 (475)
Q Consensus       199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~  276 (475)
                      .+-..|.+.|++++|+..|++..+..  | +...+..+-..+...|++++|...|+...+   +.| +...|..+-..|.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence            38889999999999999999998853  4 677889999999999999999999999984   355 4667888877777


Q ss_pred             hcCC--HHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          277 SAGH--LIEAEEFVERMPFEPTVEV--WEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       277 ~~g~--~~~A~~~~~~m~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ..|+  .+++...++... .|+...  |..+-.++...|+.+.|...++...++.|+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            6654  455667777663 344433  33333455567899999999998888888754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.36  E-value=1.7e-05  Score=82.29  Aligned_cols=148  Identities=7%  Similarity=-0.062  Sum_probs=88.5

Q ss_pred             cCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVF  186 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f  186 (475)
                      .|++++|++.|++.....|+ ...|..+-..+.+.|++++|.+.+++..+.. ..+..++..+-..|.+.|++++|.+.|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35677777777766554443 4556667777777777777777777776654 345667777777777777777777777


Q ss_pred             Hhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 038373          187 DQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA---EAVKEGFLYFEIMKN  257 (475)
Q Consensus       187 ~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~---g~~~~a~~~~~~m~~  257 (475)
                      ++..+  | +...|..+...|.+.|++++|.+.|++..+... -+...+..+...+...   |+.++|.+.+++..+
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            76542  2 456777777777777777777777777766421 2455666677777777   777777777777663

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.35  E-value=2.4e-05  Score=72.19  Aligned_cols=181  Identities=8%  Similarity=-0.077  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---C-HHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCCNTRLARKVFDQLRK--R---N-LSSWH  198 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~-~~tyn  198 (475)
                      ...+-.+-..+.+.|++++|...|+.+.+.. +.+   ...+..+-.+|.+.|++++|...|+...+  |   + ...|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3344444444555566666666666655542 112   34455555555566666666666655432  2   1 22444


Q ss_pred             HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHH
Q 038373          199 LMISGYAA--------NGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI  269 (475)
Q Consensus       199 ~li~~~~~--------~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~  269 (475)
                      .+..+|..        .|++++|+..|++..+..  |+. .....              ...+......     -...+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~  152 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHHHHH
Confidence            44555555        555555555555555432  221 11100              0000000000     000124


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCchHHHHHHHHHhccCCCC
Q 038373          270 AIIKVLGSAGHLIEAEEFVERM-PFEPT----VEVWEALRNFAQIH----------GDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~l~~~~~~~  330 (475)
                      .+-..|.+.|++++|...|++. ...|+    ...+..+..+|...          |+++.|...++.+.+..|+.
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            4566788888888888888776 22233    34555565666655          77777777777776666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.34  E-value=1.7e-05  Score=68.60  Aligned_cols=24  Identities=4%  Similarity=-0.125  Sum_probs=9.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Q 038373          232 FLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       232 ~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      +..+-..+...|++++|...|+.+
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~  134 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNI  134 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHH
Confidence            333333333334444444433333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.32  E-value=3.9e-05  Score=80.98  Aligned_cols=234  Identities=10%  Similarity=-0.026  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHcC-------ChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCCHHH
Q 038373           95 LESLDVNLLSLCKEG-------KVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGK-RVHELLRTSAFVKDVEL  165 (475)
Q Consensus        95 ~~~~n~li~~~~~~g-------~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~  165 (475)
                      +..|...|.---..+       ..+++..+|++... ..-+...|-....-+-..|+.++|. ++|+..... ++.+...
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L  380 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence            456776665433322       12345567776554 2345566666666677778888996 999999864 3557777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc-------------CC------------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLRK-------------RN------------LSSWHLMISGYAANGQGADGLMLFEQM  220 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~~-------------~~------------~~tyn~li~~~~~~g~~~~A~~l~~~M  220 (475)
                      +-.++...-+.|++++|+++|+.+.+             |+            ...|-..+....+.|..+.|..+|.+.
T Consensus       381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88899999999999999999998753             31            236888888888899999999999999


Q ss_pred             HHc-C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--
Q 038373          221 RKT-G-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP--  295 (475)
Q Consensus       221 ~~~-g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p--  295 (475)
                      .+. + ..+......+.+.-. ..++.+.|..+|+...+.++  -+...+...++.....|+.+.|..+|++. ...|  
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~  537 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS  537 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred             HHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence            875 2 233344444444422 23568999999999885533  34556788899899999999999999997 3234  


Q ss_pred             --CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373          296 --TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI  332 (475)
Q Consensus       296 --~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~  332 (475)
                        ....|...+..-.+.|+.+.+..+.+.+.+..|+...
T Consensus       538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence              4578999999999999999999999999998887643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.30  E-value=1.5e-05  Score=75.91  Aligned_cols=196  Identities=9%  Similarity=-0.031  Sum_probs=107.8

Q ss_pred             cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD  187 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~  187 (475)
                      .|++++|.+++++.....+..     +   +...++++.|...|...               ...|...|++++|...|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~-----~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~   60 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS-----F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL   60 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC-----S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc-----c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence            467788888887643311110     0   11135555555555543               345666677777766666


Q ss_pred             hccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 038373          188 QLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTG--P-HPD--KETFLVVFAACASAEAVKEGFLYFE  253 (475)
Q Consensus       188 ~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g--~-~pd--~~t~~~li~~~~~~g~~~~a~~~~~  253 (475)
                      +..+     .+    ..+|+.+...|.+.|++++|+..|++..+.-  . .|.  ..+++.+-..|.. |++++|...|+
T Consensus        61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~  139 (307)
T 2ifu_A           61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ  139 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            5432     11    2366667777777777777777776654320  0 111  2356666666666 77777777776


Q ss_pred             HHhhhC---CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHH
Q 038373          254 IMKNDY---GIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEE  321 (475)
Q Consensus       254 ~m~~~~---g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~  321 (475)
                      +..+-.   |-.. -..+++.+-..|.+.|++++|.+.|++. .+   .++    ...|..+...+...|+.+.|...++
T Consensus       140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  219 (307)
T 2ifu_A          140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR  219 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            654210   1100 1345666667777777777777777665 10   111    1244444455555677766666666


Q ss_pred             HHhccCC
Q 038373          322 LLGDLDP  328 (475)
Q Consensus       322 ~l~~~~~  328 (475)
                      ... +.|
T Consensus       220 ~al-~~p  225 (307)
T 2ifu_A          220 ESY-SIP  225 (307)
T ss_dssp             HHT-TST
T ss_pred             HHh-CCC
Confidence            655 443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.30  E-value=1.5e-05  Score=75.84  Aligned_cols=158  Identities=6%  Similarity=-0.046  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCC---CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC--CH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASAS---AG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK--DV  163 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~  163 (475)
                      .|+.....|...|++++|.+.|.+.....   .+    ..+|+.+...|.+.|++++|...+++..+.    | .+  -.
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a  116 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence            56666667777788888877776533210   11    224666666666677777777766665432    2 11  12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc----C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK----R-N----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPDK-  229 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~-~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~-  229 (475)
                      .+++.+-..|.+ |++++|...|++..+    . +    ..+|+.+...|.+.|++++|++.|++....    +..++. 
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            345555555655 666666666654431    0 1    235555566666666666666666555431    111111 


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          230 ETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       230 ~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .++..+...+...|++++|...|+...
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            133444444444555555555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.29  E-value=1.7e-05  Score=68.53  Aligned_cols=152  Identities=12%  Similarity=-0.048  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 038373          166 NNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA-CAS  241 (475)
Q Consensus       166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~-~~~  241 (475)
                      +..+...+.+.|++++|...|++..+  | +...|..+...|.+.|++++|+..|++.....  |+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            34455678889999999999998763  3 67789999999999999999999998876543  344333222111 112


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCchHH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT---VEVWEALRNFAQIHGDVELE  316 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~t~~~li~~~~~~g~~~~a  316 (475)
                      .+...+|...++...+   ..| +...+..+-..|.+.|++++|.+.|++. ...|+   ...|..|...+...|+.++|
T Consensus        87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            2223346777877763   345 4778888999999999999999999988 44554   56888999999999999887


Q ss_pred             HHHHHH
Q 038373          317 DRAEEL  322 (475)
Q Consensus       317 ~~~~~~  322 (475)
                      ...++.
T Consensus       164 ~~~y~~  169 (176)
T 2r5s_A          164 ASKYRR  169 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.27  E-value=4.2e-05  Score=69.02  Aligned_cols=184  Identities=11%  Similarity=0.041  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCH----HHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VK-DVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNL----SSWHL  199 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~----~tyn~  199 (475)
                      ...+-.+...+.+.|++++|...|+.+.+..- .| ....+..+..+|.+.|++++|...|++..+  |+.    ..|-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            33444445556667777777777777766421 11 124556666777777777777777776642  321    13333


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HH-----------
Q 038373          200 MISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EH-----------  267 (475)
Q Consensus       200 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~-----------  267 (475)
                      +-.+|.+.|..     .++            .|..+-......|+.++|...|+.+.+.   .|+. ..           
T Consensus        84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence            33333331100     000            0000111112234455555555554422   1221 11           


Q ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          268 ------YIAIIKVLGSAGHLIEAEEFVERM-PFEPTV----EVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       268 ------y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                            .-.+-..|.+.|++++|...|+++ ...|+.    ..+..+..++.+.|+.+.|.+.++.+....|+..
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence                  124456788999999999999987 323442    4577788899999999999888888877666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.27  E-value=1.9e-05  Score=81.90  Aligned_cols=146  Identities=8%  Similarity=-0.116  Sum_probs=110.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHH
Q 038373          141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLF  217 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~  217 (475)
                      .|++++|.+.+++..+.. ..+...+..+-..|.+.|++++|.+.|++..+  | +...|..+...|...|++++|.+.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478889999999887654 44688899999999999999999999998764  3 6779999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038373          218 EQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA---GHLIEAEEFVERM  291 (475)
Q Consensus       218 ~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~---g~~~~A~~~~~~m  291 (475)
                      ++..+.. .-+...+..+-..+.+.|++++|.+.++...+.   .| +...+..+...|.+.   |+.++|.+.+++.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9988753 225778999999999999999999999998843   34 467788899999999   9999999999887

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.24  E-value=5.1e-05  Score=68.46  Aligned_cols=179  Identities=11%  Similarity=-0.033  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDV-ELNNK  168 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~  168 (475)
                      ...+..+...+.+.|++++|...|++.....|+    ...+..+..++.+.|++++|...|+...+..-. +.. ..+-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            445556667789999999999999987654443    346777888999999999999999999876311 221 23333


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373          169 LIEMYGK------------------CCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP  227 (475)
Q Consensus       169 Li~~~~k------------------~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p  227 (475)
                      +-.+|.+                  .|+.++|...|++..+  |+ ...+.+....          ..+...+.      
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~------  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA------  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH------
Confidence            4444443                  4566777777766653  22 2222211100          00000000      


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          228 DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       228 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                        .....+...+.+.|++++|...|+.+.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus       148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence              0112334556667777777777777764321111 1234666777777777777777777765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.22  E-value=2.2e-05  Score=68.87  Aligned_cols=151  Identities=13%  Similarity=0.002  Sum_probs=82.9

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---------CCHHHHHHHHHHHHhcCCh
Q 038373          140 NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---------RNLSSWHLMISGYAANGQG  210 (475)
Q Consensus       140 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---------~~~~tyn~li~~~~~~g~~  210 (475)
                      ..|++++|.++++.+.. .......+++.+-..|...|++++|...|++..+         ....+|+.+-..|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34555555553333322 1112345556666666666666666666655432         1234566666677777777


Q ss_pred             HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcC-CHHHHHHHHHHHHhcCC
Q 038373          211 ADGLMLFEQMRKT----GPHP--DKETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVP-GIEHYIAIIKVLGSAGH  280 (475)
Q Consensus       211 ~~A~~l~~~M~~~----g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~y~~li~~~~~~g~  280 (475)
                      ++|.+.|++..+.    |-.|  ....+..+-..+...|++++|...+++....   .+-.. -..++..+-..|.+.|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7777777665442    1111  1234566666677777777777777665421   11111 12335666677777888


Q ss_pred             HHHHHHHHHhC
Q 038373          281 LIEAEEFVERM  291 (475)
Q Consensus       281 ~~~A~~~~~~m  291 (475)
                      .++|.+.|++.
T Consensus       163 ~~~A~~~~~~a  173 (203)
T 3gw4_A          163 LLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887777653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.20  E-value=0.00013  Score=68.69  Aligned_cols=95  Identities=17%  Similarity=0.046  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhh---hCCCcCC-H
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRK----T-GPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKN---DYGIVPG-I  265 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~----~-g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~g~~p~-~  265 (475)
                      +|+.+-..|...|++++|+..|++..+    . +..+.. .+|..+...|.+.|++++|...++...+   +.+..+. .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            344444455555555555555544442    0 111111 1444455555555555555555444331   1111111 3


Q ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHHh
Q 038373          266 EHYIAIIKVLGSAGH-LIEAEEFVER  290 (475)
Q Consensus       266 ~~y~~li~~~~~~g~-~~~A~~~~~~  290 (475)
                      .+|..+-..|.+.|+ .++|.+.|++
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            345555555555553 3555444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.19  E-value=4.9e-05  Score=64.11  Aligned_cols=92  Identities=9%  Similarity=-0.045  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .|..+-..+.+.|++++|...|++.....| +..++..+...+...|++++|.+.+....+.. ..+..++..+..+|.+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            344444455555555555555554333222 33344444444444555555555554444432 2233444444444444


Q ss_pred             cCCHHHHHHHHHhc
Q 038373          176 CCNTRLARKVFDQL  189 (475)
Q Consensus       176 ~g~~~~A~~~f~~m  189 (475)
                      .|++++|...|++.
T Consensus        94 ~~~~~~A~~~~~~a  107 (166)
T 1a17_A           94 LGKFRAALRDYETV  107 (166)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHH
Confidence            44444444444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.18  E-value=3.2e-05  Score=72.84  Aligned_cols=158  Identities=11%  Similarity=-0.001  Sum_probs=124.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 038373          160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV-V  235 (475)
Q Consensus       160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-l  235 (475)
                      ..+...+..+-..+.+.|++++|...|++..  .| +...+..+...|.+.|++++|..++++....  .|+...... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence            4455667778888999999999999999876  34 6778999999999999999999999988764  455543332 2


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc
Q 038373          236 FAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT---VEVWEALRNFAQIH  310 (475)
Q Consensus       236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~t~~~li~~~~~~  310 (475)
                      ...+...++.++|...++.....   .| +...+..|-..|...|+.++|.+.|.+. ...|+   ...+..|...+...
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            23366777888888888887733   45 5778889999999999999999999988 33343   67899999999999


Q ss_pred             CCchHHHHHHHH
Q 038373          311 GDVELEDRAEEL  322 (475)
Q Consensus       311 g~~~~a~~~~~~  322 (475)
                      |+.+.|...++.
T Consensus       269 g~~~~a~~~~r~  280 (287)
T 3qou_A          269 GTGDALASXYRR  280 (287)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHH
Confidence            998877655543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.18  E-value=7.3e-05  Score=70.35  Aligned_cols=162  Identities=13%  Similarity=-0.037  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----H
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-----VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----L  194 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~  194 (475)
                      ..+...+..+...|++++|.+.+....+..-...     ...+..+...|...|++++|...|++..+     .+    .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455555666666777777666666555421111     12233455566666777777777765431     11    3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC-
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKT-GPHPD-----KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG-  264 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-  264 (475)
                      .+|+.+-..|...|++++|+..|++..+. ...|+     ..+|+.+...|.+.|++++|...++...+-   .+.... 
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            36777777777777777777777776521 01112     246777777777777777777777765421   111111 


Q ss_pred             HHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 038373          265 IEHYIAIIKVLGSAGHLIEA-EEFVER  290 (475)
Q Consensus       265 ~~~y~~li~~~~~~g~~~~A-~~~~~~  290 (475)
                      ..+|..+-..|.+.|+.++| .+.|++
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            45677777777888887777 554544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.18  E-value=8.2e-05  Score=59.98  Aligned_cols=116  Identities=7%  Similarity=-0.062  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ..+...|..+...+.+.|++++|.+.|++.....| +...+..+...+...|++++|.+.++...+.. ..+..++..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   91 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA   91 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence            46677888899999999999999999998776555 56678888888888999999999998888764 44677788888


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG  208 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g  208 (475)
                      .+|.+.|++++|.+.|++..+  | +...|..+...+.+.|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            888888888888888877653  2 3445666655555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.17  E-value=4.9e-05  Score=60.31  Aligned_cols=93  Identities=11%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHh
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAA  206 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~  206 (475)
                      .+..+...+...|++++|.+++.++.+.. ..+..++..+...|.+.|++++|..+|+++.+   .+..+|..+...|..
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34444444444455555555555444432 23344555555555555555555555555432   244455566666666


Q ss_pred             cCChHHHHHHHHHHHHc
Q 038373          207 NGQGADGLMLFEQMRKT  223 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~~  223 (475)
                      .|++++|...|+++.+.
T Consensus        90 ~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           90 QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            66666666666665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.17  E-value=9.9e-05  Score=58.48  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      ...+..+...|.+.|++++|.++|+++.+   .+..+|..+...|.+.|++++|+.+|+++.+.. ..+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            44566666666677777777777766542   245566666666777777777777776666542 22455666666666


Q ss_pred             HccCCHHHHHHHHHHHh
Q 038373          240 ASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~  256 (475)
                      ...|++++|...++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHH
Confidence            67777777777776665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.15  E-value=7.2e-05  Score=63.01  Aligned_cols=88  Identities=11%  Similarity=-0.030  Sum_probs=36.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA  244 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~  244 (475)
                      .+...|.+.|++++|...|++..+   .+..+|..+...|...|++++|++.|++..+.. ..+...|..+...+...|+
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~   96 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   96 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence            333344444444444444443321   133344444444444444444444444444321 1123344444444444444


Q ss_pred             HHHHHHHHHHHh
Q 038373          245 VKEGFLYFEIMK  256 (475)
Q Consensus       245 ~~~a~~~~~~m~  256 (475)
                      +++|...++...
T Consensus        97 ~~~A~~~~~~a~  108 (166)
T 1a17_A           97 FRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.11  E-value=0.00044  Score=64.90  Aligned_cols=188  Identities=10%  Similarity=-0.068  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHhcccC-----C----
Q 038373          126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN---KLIEMYGKCCNTRLARKVFDQLRKR-----N----  193 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~Li~~~~k~g~~~~A~~~f~~m~~~-----~----  193 (475)
                      |+..+...+...+.-.-  +       ++.......+...+.   ..+..+.+.|++++|..++++..+.     +    
T Consensus        44 ~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~  114 (293)
T 3u3w_A           44 PSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF  114 (293)
T ss_dssp             CCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             CCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH
Confidence            77777777776664321  1       111111223333333   3467889999999999999987642     1    


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---C-CCcCC
Q 038373          194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PD----KETFLVVFAACASAEAVKEGFLYFEIMKND---Y-GIVPG  264 (475)
Q Consensus       194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~-g~~p~  264 (475)
                      ...|..+...|...|++++|+..|++....... +|    ..+|+.+-..|...|++++|...|+...+.   . +..+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            123445666777788999999999999874322 33    336899999999999999999999987731   1 22222


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-chHHHHHHHH
Q 038373          265 -IEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT-VEVWEALRNFAQIHGD-VELEDRAEEL  322 (475)
Q Consensus       265 -~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~t~~~li~~~~~~g~-~~~a~~~~~~  322 (475)
                       ..+|..+-..|.+.|++++|.+.+++.       +..+. ..+|..+-..|.+.|+ .+.|.+.++.
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence             347888999999999999999998876       22222 5678888888999995 5777655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.11  E-value=0.00013  Score=68.50  Aligned_cols=160  Identities=10%  Similarity=-0.086  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N------LSSWHLMISGYAANGQGADGLMLFEQMRKTG---PHPD--  228 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g---~~pd--  228 (475)
                      ...+...+..|...|++++|.+.+++..+  + .      ...+..+...|...|++++|++.|++..+..   ..+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            44566677888999999999999876542  1 1      1234456666778889999999999887532   1222  


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHh---hhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------
Q 038373          229 KETFLVVFAACASAEAVKEGFLYFEIMK---NDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-------  295 (475)
Q Consensus       229 ~~t~~~li~~~~~~g~~~~a~~~~~~m~---~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-------  295 (475)
                      ..+|+.+-..|...|++++|...++...   +..+-.+  ...+|+.+-..|.+.|++++|.+.|++. .+.+       
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            4488899999999999999999998876   2222222  1257888899999999999999998876 1111       


Q ss_pred             CHHHHHHHHHHHHHcCCchHH-HHHHHH
Q 038373          296 TVEVWEALRNFAQIHGDVELE-DRAEEL  322 (475)
Q Consensus       296 ~~~t~~~li~~~~~~g~~~~a-~~~~~~  322 (475)
                      -..+|..+-..|.+.|+.+.| ...++.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            156778888889999999877 543433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.11  E-value=0.00015  Score=64.84  Aligned_cols=171  Identities=11%  Similarity=-0.010  Sum_probs=99.1

Q ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHh
Q 038373          113 EAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC----NTRLARKVFDQ  188 (475)
Q Consensus       113 ~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g----~~~~A~~~f~~  188 (475)
                      +|++.|++.... -+...+..|-..+...+++++|.+.|+...+.|   +...+..|-.+|.. +    +.++|.+.|++
T Consensus         4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            345555544332 244555555556666677777777777776655   45556666666665 5    67777777766


Q ss_pred             cccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhh
Q 038373          189 LRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACAS----AEAVKEGFLYFEIMKND  258 (475)
Q Consensus       189 m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~  258 (475)
                      ..++ +..++..|-..|..    .+++++|++.|++..+.|.. -+...+..|-..|..    .++.++|...|+...+.
T Consensus        79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            5544 45566666666655    66677777777766654421 014455555555555    56677777777766532


Q ss_pred             CCCcCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHhC
Q 038373          259 YGIVPGIEHYIAIIKVLGSA-G-----HLIEAEEFVERM  291 (475)
Q Consensus       259 ~g~~p~~~~y~~li~~~~~~-g-----~~~~A~~~~~~m  291 (475)
                       +  .+...+..|-.+|.+. |     +.++|.++|++.
T Consensus       159 -~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          159 -S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             -S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             -C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence             1  2233445555555443 2     666676666653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.09  E-value=6.2e-05  Score=65.92  Aligned_cols=150  Identities=9%  Similarity=-0.072  Sum_probs=109.3

Q ss_pred             HHHcCChHHHHH---HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHc
Q 038373          105 LCKEGKVREAIE---YMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV-KDVELNNKLIEMYGKC  176 (475)
Q Consensus       105 ~~~~g~~~~A~~---l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~Li~~~~k~  176 (475)
                      +...|++++|.+   ++.....  ....++..+-..+...|++++|...+.+..+.    |.. ....+++.+-..|...
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA   79 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence            346799999999   5543211  24556888888899999999999999888762    222 2356788888899999


Q ss_pred             CCHHHHHHHHHhccc-----C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHc
Q 038373          177 CNTRLARKVFDQLRK-----R-N----LSSWHLMISGYAANGQGADGLMLFEQMRKTG---PHPD--KETFLVVFAACAS  241 (475)
Q Consensus       177 g~~~~A~~~f~~m~~-----~-~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g---~~pd--~~t~~~li~~~~~  241 (475)
                      |++++|...|++..+     + +    ...|+.+-..|...|++++|.+.+++.....   -.+.  ..++..+-..+..
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            999999999987542     2 2    2468888899999999999999998876421   1111  2346778888899


Q ss_pred             cCCHHHHHHHHHHHh
Q 038373          242 AEAVKEGFLYFEIMK  256 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~  256 (475)
                      .|++++|.+.+++..
T Consensus       160 ~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          160 EKNLLEAQQHWLRAR  174 (203)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999888766

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.06  E-value=9.2e-05  Score=59.23  Aligned_cols=115  Identities=9%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+...+...|++++|.+.|++.....| +...+..+...+...|++++|.+.+....+.. ..+...+..+...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            344555555666666666666666665443222 34445555555555666666666665555442 2334455555555


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCC
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQ  209 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~  209 (475)
                      |.+.|++++|...|++..+  | +...|..+...+.+.|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            5555555555555554431  2 33444444444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.06  E-value=0.00063  Score=60.62  Aligned_cols=161  Identities=8%  Similarity=0.020  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLK----SIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      -+...+..|-..|...+++++|++.|++....+ +...+..|-..|.. +    +.++|.+.|+...+.|   +...+..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            567778888888999999999999999876644 55666667667776 6    8999999999998876   5778888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373          169 LIEMYGK----CCNTRLARKVFDQLRKRN-----LSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV  235 (475)
Q Consensus       169 Li~~~~k----~g~~~~A~~~f~~m~~~~-----~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l  235 (475)
                      |-.+|..    .++.++|...|++..+.+     ..+++.|-..|..    .++.++|+..|++-.+.+  .+...+..|
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~L  168 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWA  168 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            8888887    889999999999887653     5789999999998    889999999999998762  244456666


Q ss_pred             HHHHHcc-C-----CHHHHHHHHHHHhhhCCC
Q 038373          236 FAACASA-E-----AVKEGFLYFEIMKNDYGI  261 (475)
Q Consensus       236 i~~~~~~-g-----~~~~a~~~~~~m~~~~g~  261 (475)
                      -..|... |     +.++|...|+...+. |.
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~-g~  199 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSCLE-GF  199 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHc-CC
Confidence            6666542 3     899999999988843 64

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.03  E-value=5.5e-05  Score=63.60  Aligned_cols=115  Identities=11%  Similarity=-0.017  Sum_probs=62.6

Q ss_pred             HcCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038373          107 KEGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKV  185 (475)
Q Consensus       107 ~~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~  185 (475)
                      ..|++++|++.|.+.....|+.. .+-.+-..|.+.|++++|.+.|+...+.. +-+..+|..+-.+|.+.|++++|...
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            34556666666665544333222 23344555666666666666666665543 33455666666666666666666666


Q ss_pred             HHhccc--C-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Q 038373          186 FDQLRK--R-NLSSWHLMISGYAANGQGADGLML-FEQMRK  222 (475)
Q Consensus       186 f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l-~~~M~~  222 (475)
                      |++..+  | +..+|..+...|.+.|+.++|.+. +++..+
T Consensus        88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            655442  3 345566666666666665554443 344443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.03  E-value=0.0012  Score=63.44  Aligned_cols=226  Identities=13%  Similarity=0.092  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      |+.+-..+.+.+..++|++++.++....|+..| |+.--..+...+ .++++.++++.+.+.. .-+..+|+----.+.+
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            343333344555667999999998877777666 666555556667 5999999999999875 5677788877777777


Q ss_pred             c-C-CHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038373          176 C-C-NTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGA--------DGLMLFEQMRKTGPHPDKETFLVVFAACASA  242 (475)
Q Consensus       176 ~-g-~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~--------~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~  242 (475)
                      . + +.+++.++++.+.+.   |-.+|+--...+.+.|.++        ++++.++++.+.... |...|+..-..+.+.
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            6 7 889999999998753   6678887666666666666        999999999987543 888898888888887


Q ss_pred             CC-------HHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC
Q 038373          243 EA-------VKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL--------------------IEAEEFVERM-PF  293 (475)
Q Consensus       243 g~-------~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~--------------------~~A~~~~~~m-~~  293 (475)
                      +.       ++++.+.++....   ..| |...|+-+-..+.+.|+-                    .+..++..++ +.
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD  291 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred             cccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence            76       7888888888773   344 677787777777777653                    3444555555 21


Q ss_pred             -------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh-ccCC
Q 038373          294 -------EPTVEVWEALRNFAQIHGDVELEDRAEELLG-DLDP  328 (475)
Q Consensus       294 -------~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~-~~~~  328 (475)
                             .+....+..|.+.|...|+.++|.++++.+. +.+|
T Consensus       292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp  334 (349)
T 3q7a_A          292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ  334 (349)
T ss_dssp             CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred             ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence                   2677888889999999999988888888875 4443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.02  E-value=1.7e-05  Score=66.74  Aligned_cols=107  Identities=6%  Similarity=-0.070  Sum_probs=51.8

Q ss_pred             HcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      ..|++++|...|......   +...|-.+-..|.+.|++++|++.|++..+.  .| +..+|..+-..+...|++++|..
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence            334455555555444321   2223444455555555555555555555442  22 34455555555555555555555


Q ss_pred             HHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038373          251 YFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEE  286 (475)
Q Consensus       251 ~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~  286 (475)
                      .|+...+   +.| +...|..+-..|.+.|+.++|.+
T Consensus        87 ~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           87 CYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            5555542   233 23445555555555555554433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.99  E-value=4.7e-05  Score=71.45  Aligned_cols=188  Identities=7%  Similarity=-0.108  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHH
Q 038373          128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGY  204 (475)
Q Consensus       128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~  204 (475)
                      ...+..+-..+.+.|++++|...+....+.. ..+...|..+-.+|.+.|++++|...|++..+  | +...|..+..+|
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555566666777777777777766653 33667777777777777888888877776653  2 566777778888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 038373          205 AANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE  283 (475)
Q Consensus       205 ~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~  283 (475)
                      ...|++++|+..|++..+..  |+. ..+...+....+   ..++.. +...... ....+......+ ..+ ..|+.++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~~~~~  153 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYL-TRL-IAAERER  153 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHHHHHH
Confidence            88888888888887766532  211 011111111111   111111 1222211 333343333333 222 2688888


Q ss_pred             HHHHHHhC-CCCCCHHHHHH-HHHHHHHc-CCchHHHHHHHHHhc
Q 038373          284 AEEFVERM-PFEPTVEVWEA-LRNFAQIH-GDVELEDRAEELLGD  325 (475)
Q Consensus       284 A~~~~~~m-~~~p~~~t~~~-li~~~~~~-g~~~~a~~~~~~l~~  325 (475)
                      |.+.+++. ...|+...... +-..+.+. +..++++++++...+
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            88888776 55565443332 32233333 445555555555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.98  E-value=6.6e-05  Score=69.96  Aligned_cols=192  Identities=12%  Similarity=-0.027  Sum_probs=129.7

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCC-HHHHHHH-------HHHHhccCCHHHHHHHHHHHHHcCCCCC-------------
Q 038373          104 SLCKEGKVREAIEYMGQDASASAG-YDVFSSL-------LDSCGNLKSIEMGKRVHELLRTSAFVKD-------------  162 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~l-------l~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------  162 (475)
                      ++ +.++..+|.+.|.+.....|+ ...|..+       ...+.+.++..++...+..-.  ++.|+             
T Consensus        16 ~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           16 SM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             HH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTC
T ss_pred             cc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccc
Confidence            45 689999999999987765554 3456666       233333333333333333222  32222             


Q ss_pred             ---------HHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--
Q 038373          163 ---------VELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK--  229 (475)
Q Consensus       163 ---------~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--  229 (475)
                               ...+-.+...|...|++++|.++|+.+.  .|+-+..-.+-..|.+.|++++|+..|++...   .|+.  
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~  169 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFL  169 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCccc
Confidence                     2334456778888999999999999886  35333555666688999999999999985433   2322  


Q ss_pred             --HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc-CC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038373          230 --ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV-PG--IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEAL  303 (475)
Q Consensus       230 --~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~l  303 (475)
                        ..+..+-.++...|++++|...|++.. . |-. |.  ......+-.++.+.|+.++|..+|+++ ...|+...+..|
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL  247 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEAN-D-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHh-c-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence              367777888999999999999999987 3 333 54  224455666789999999999999988 445664444444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.95  E-value=8e-05  Score=71.82  Aligned_cols=92  Identities=10%  Similarity=-0.109  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAA  238 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~  238 (475)
                      ..+|..+-.+|.+.|++++|...|++..+   .+...|..+-.+|...|++++|+..|++..+.  .| +...+..+...
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            35666666667777777777777665542   25556666777777777777777777766653  23 44566666666


Q ss_pred             HHccCCHHHH-HHHHHHHh
Q 038373          239 CASAEAVKEG-FLYFEIMK  256 (475)
Q Consensus       239 ~~~~g~~~~a-~~~~~~m~  256 (475)
                      +.+.|+.++| ..++..|.
T Consensus       274 ~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666777666 33455544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.94  E-value=0.00012  Score=63.01  Aligned_cols=116  Identities=10%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             HHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 038373          106 CKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCNT--RL  181 (475)
Q Consensus       106 ~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~~--~~  181 (475)
                      ...|++++|...|++.....| +...|..+-..+...|++++|...++...+.. ..+...+..+..+ |.+.|+.  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            455666666666655443233 34455555556666666666666666655543 2344455555555 4555555  55


Q ss_pred             HHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          182 ARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       182 A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      |...|++..+  | +...|..+...|...|++++|...|++..+
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            5555555432  2 344555555555555555555555555554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.94  E-value=4e-05  Score=65.98  Aligned_cols=135  Identities=8%  Similarity=0.017  Sum_probs=91.6

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH-HHhcCCh--HH
Q 038373          139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISG-YAANGQG--AD  212 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~-~~~~g~~--~~  212 (475)
                      ...|++++|...+....+.. ..+...+..+...|...|++++|...|++..+   .+...|..+... |...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34567777877777776654 45677888888888888888888888887653   366677777777 7788887  88


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc
Q 038373          213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA  278 (475)
Q Consensus       213 A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~  278 (475)
                      |...|++..+... -+...+..+...+...|++++|...++...+.   .|+......++....+.
T Consensus       100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~i~~~  161 (177)
T 2e2e_A          100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL---NSPRINRTQLVESINMA  161 (177)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---CCCCccHHHHHHHHHHH
Confidence            8888888877531 24567777778888888888888888887733   33332333444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.92  E-value=0.00029  Score=56.19  Aligned_cols=113  Identities=12%  Similarity=-0.048  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA  240 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~  240 (475)
                      ..+..+...|...|++++|...|++..+   .+...|..+...|...|++++|.+.+++..... ..+...+..+...+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            3444445555555555555555554431   244455555555555666666666665555432 123445555555566


Q ss_pred             ccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCC
Q 038373          241 SAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGH  280 (475)
Q Consensus       241 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~  280 (475)
                      ..|++++|...++...+.   .| +...+..+...+.+.|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhc
Confidence            666666666666555522   22 34445555555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.89  E-value=0.00026  Score=56.86  Aligned_cols=91  Identities=9%  Similarity=-0.080  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      .+..+...|.+.|++++|...|++..+   .+...|..+...|...|++++|++.|++..+.. ..+...+..+...+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence            333444444444444444444443321   133344444444444444444444444444321 1123344444444444


Q ss_pred             cCCHHHHHHHHHHHh
Q 038373          242 AEAVKEGFLYFEIMK  256 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~  256 (475)
                      .|++++|.+.++...
T Consensus        97 ~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           97 MKDYTKAMDVYQKAL  111 (133)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            444444444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.87  E-value=0.0035  Score=62.91  Aligned_cols=199  Identities=9%  Similarity=0.014  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHcCCh----HHHHHHHHhcccCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           98 LDVNLLSLCKEGKV----REAIEYMGQDASASAGYDVFSSLLDSCGNLK---SIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        98 ~n~li~~~~~~g~~----~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      +..|-..|...+.+    +++..+++......|+  .+..|-..+.+.|   +.++|.+.|....+.| .++...+..|-
T Consensus       144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg  220 (452)
T 3e4b_A          144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA  220 (452)
T ss_dssp             HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence            33444445555533    3344444444442344  6666666677777   7888888888888887 56666656676


Q ss_pred             HHHHHc----CCHHHHHHHHHhcccCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373          171 EMYGKC----CNTRLARKVFDQLRKRNLSSWHLMISG-Y--AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE  243 (475)
Q Consensus       171 ~~~~k~----g~~~~A~~~f~~m~~~~~~tyn~li~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g  243 (475)
                      .+|...    ++.++|.+.|+....-+...+..|-.. |  ...|+.++|++.|++..+.|   +...+..|-..|. .|
T Consensus       221 ~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G  296 (452)
T 3e4b_A          221 RVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG  296 (452)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence            777554    688888888887772255667666666 3  45788888888888887766   5556666655555 45


Q ss_pred             -----CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373          244 -----AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFAQ  308 (475)
Q Consensus       244 -----~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~  308 (475)
                           +.++|...|+... . |   +...+..|-..|.+    ..+.++|.++|++---..+......|-..|.
T Consensus       297 ~g~~~d~~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          297 KWVPADAKAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS  365 (452)
T ss_dssp             SSSCCCHHHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence                 8888888887655 2 2   34555555555655    3378888888887611223334444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.85  E-value=0.00045  Score=56.00  Aligned_cols=85  Identities=8%  Similarity=-0.057  Sum_probs=34.7

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A  213 (475)
                      .+.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|...|++..+   .+...|..+-.+|...|++++|
T Consensus        22 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A  100 (126)
T 4gco_A           22 EYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHH
Confidence            3344444444444444443332 22334444444444444444444444443321   1333444444444444444444


Q ss_pred             HHHHHHHHH
Q 038373          214 LMLFEQMRK  222 (475)
Q Consensus       214 ~~l~~~M~~  222 (475)
                      ++.|++..+
T Consensus       101 ~~~~~~al~  109 (126)
T 4gco_A          101 QRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.80  E-value=0.00075  Score=71.17  Aligned_cols=212  Identities=11%  Similarity=-0.060  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHH-HHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCC
Q 038373           94 QLESLDVNLLSLCKEGKVREAI-EYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF---------VKD  162 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~-~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~p~  162 (475)
                      +...|-..+.-+-+.|+.++|. ++|++....-|+ ...+-..+...-+.|+++.|.++|+.+.+...         .|+
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            4556666666677789999997 999887654454 44466677777788999999999999986420         142


Q ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCC
Q 038373          163 ------------VELNNKLIEMYGKCCNTRLARKVFDQLRKR----NLSSWHLMISGYAA-NGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       163 ------------~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~----~~~tyn~li~~~~~-~g~~~~A~~l~~~M~~~g~  225 (475)
                                  ..+|...++..-+.|.++.|+++|+...+.    ....|-..+.--.+ .++.+.|..+|+...+. +
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~  500 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F  500 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence                        347888888888999999999999987542    22233222222223 35589999999998875 3


Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038373          226 HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEA  302 (475)
Q Consensus       226 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~  302 (475)
                      .-+..-+...+.-....|+.+.|..+|+..... ...+  ....|...++.-.+.|+.+.+.++.+++ ...|+......
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence            335556678888888899999999999998843 2211  3567999999999999999999999999 23355444444


Q ss_pred             HHHHH
Q 038373          303 LRNFA  307 (475)
Q Consensus       303 li~~~  307 (475)
                      +++=|
T Consensus       580 f~~ry  584 (679)
T 4e6h_A          580 FTNKY  584 (679)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.79  E-value=0.00031  Score=59.17  Aligned_cols=93  Identities=12%  Similarity=-0.027  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHh
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAA  206 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~  206 (475)
                      .+..+-..+.+.|++++|...|+...+.. +.+...|..|-.+|.+.|++++|...|++..  .| +...|..+-.+|.+
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            35555556667777777777777776654 3456666677777777777777777776654  23 45566677777777


Q ss_pred             cCChHHHHHHHHHHHHc
Q 038373          207 NGQGADGLMLFEQMRKT  223 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~~  223 (475)
                      .|++++|+..|++..+.
T Consensus       117 lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQH  133 (151)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777766653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.00022  Score=70.63  Aligned_cols=189  Identities=8%  Similarity=-0.082  Sum_probs=134.9

Q ss_pred             HHHHHcCChHHHHHHHHhcccCCCC------------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCH
Q 038373          103 LSLCKEGKVREAIEYMGQDASASAG------------------YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDV  163 (475)
Q Consensus       103 ~~~~~~g~~~~A~~l~~~~~~~~p~------------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~  163 (475)
                      ..+.+.|++++|++.|.+.....|+                  ...+..+...|.+.|++++|.+.+..+.+. +-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3578899999999999865432221                  123778889999999999999999887653 112222


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--C
Q 038373          164 ----ELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT--GP--H  226 (475)
Q Consensus       164 ----~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~--~  226 (475)
                          .+.+.+-..+...|+.++|..++.....     .+    ..++..|...|...|++++|..++++....  +.  .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                2233333344556899999999887642     11    347889999999999999999999987653  22  2


Q ss_pred             CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          227 PD-KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       227 pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |. ..+|..++..|...|++++|..+++.....   .+..+.  ...|..+...+...|++++|...|.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            22 347888999999999999999999876532   111111  345677777888899999998877655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.78  E-value=0.0027  Score=59.27  Aligned_cols=189  Identities=8%  Similarity=-0.070  Sum_probs=129.4

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+-..+.+.|++++|+..|++.....| +...|..+-.++.+.|++++|.+.++...+.. ..+...+..+-.+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            556788888899999999999999998766556 66778888899999999999999999998764 4578899999999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~  249 (475)
                      |.+.|++++|...|++..+  | +...+...+....+.   .++ .-+.+....-...+......+ ..+ ..|+.++|.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~  155 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRL-IAAEREREL  155 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence            9999999999999987653  2 111111222222111   111 122223333344444433333 333 268888998


Q ss_pred             HHHHHHhhhCCCcCCH-HHHHHHHHHHHhc-CCHHHHHHHHHhCC
Q 038373          250 LYFEIMKNDYGIVPGI-EHYIAIIKVLGSA-GHLIEAEEFVERMP  292 (475)
Q Consensus       250 ~~~~~m~~~~g~~p~~-~~y~~li~~~~~~-g~~~~A~~~~~~m~  292 (475)
                      +.++...   ...|+. .....+-..+.+. +.+++|.++|.+..
T Consensus       156 ~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~  197 (281)
T 2c2l_A          156 EECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD  197 (281)
T ss_dssp             TTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8887766   346654 3334444445555 67889999999883

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.77  E-value=0.00022  Score=59.69  Aligned_cols=91  Identities=10%  Similarity=-0.106  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      .+..+-..|.+.|++++|...|+...  .| +...|..+-.+|...|++++|+..|++...... -+...|..+-.++..
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            34444445555555555555555443  12 444555555555555555555555555544321 133444445555555


Q ss_pred             cCCHHHHHHHHHHHh
Q 038373          242 AEAVKEGFLYFEIMK  256 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~  256 (475)
                      .|++++|...|+...
T Consensus       102 ~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          102 XGELAEAESGLFLAQ  116 (148)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=0.00072  Score=52.72  Aligned_cols=91  Identities=5%  Similarity=-0.049  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK  175 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k  175 (475)
                      .|..+...+.+.|++++|...|++.....| +...+..+...+...|++++|...++...+.. ..+...+..+..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            444444455555555555555554333222 33334444444444445555544444444432 1233344444444444


Q ss_pred             cCCHHHHHHHHHh
Q 038373          176 CCNTRLARKVFDQ  188 (475)
Q Consensus       176 ~g~~~~A~~~f~~  188 (475)
                      .|++++|.+.|++
T Consensus        85 ~~~~~~A~~~~~~   97 (118)
T 1elw_A           85 LNRFEEAKRTYEE   97 (118)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            4444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.75  E-value=0.00021  Score=57.16  Aligned_cols=95  Identities=7%  Similarity=-0.092  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC-cCC----HHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGI-VPG----IEHYIA  270 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~----~~~y~~  270 (475)
                      .|..+...|...|++++|...|++..... ..+...+..+...+...|++++|...++...+...- .++    ...|..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444444555555555555555544432 123344444445555555555555555544421000 011    344455


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 038373          271 IIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +...|.+.|++++|.+.|++.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            555555555555555555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.75  E-value=0.00043  Score=55.25  Aligned_cols=91  Identities=9%  Similarity=0.101  Sum_probs=47.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-------HHHHHHH
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-------LSSWHLM  200 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-------~~tyn~l  200 (475)
                      |..+...+...|++++|...+....+.. ..+..++..+...|.+.|++++|...|++..+  | +       ..+|..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            3444444445555555555555554433 23444555555555555555555555554432  1 1       4455555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH
Q 038373          201 ISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      ...|...|++++|.+.|++..+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            5666666666666666666555

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.75  E-value=0.00068  Score=65.21  Aligned_cols=125  Identities=7%  Similarity=-0.028  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----------------LSSWHLMISGYAANGQGADGLMLFEQMRKTG  224 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g  224 (475)
                      ...+..+-..|.+.|++++|...|++..+  |+                ...|+.+-.+|.+.|++++|+..|++..+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44555555566666666666666655431  22                4789999999999999999999999988753


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHH-HHHHHhC
Q 038373          225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEA-EEFVERM  291 (475)
Q Consensus       225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A-~~~~~~m  291 (475)
                       .-+...|..+-.++...|++++|...|+...+   +.| +...+..+-..+.+.|+.++| .++|.+|
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23677888999999999999999999999883   344 466788888999999999988 4456655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.73  E-value=0.0027  Score=60.60  Aligned_cols=232  Identities=12%  Similarity=0.067  Sum_probs=160.6

Q ss_pred             CCHHHHHHHHHH---HHHcCChH-HHHHHHHhcccCCCCHHH-HHH---HHHHHhccC-------CHHHHHHHHHHHHHc
Q 038373           93 AQLESLDVNLLS---LCKEGKVR-EAIEYMGQDASASAGYDV-FSS---LLDSCGNLK-------SIEMGKRVHELLRTS  157 (475)
Q Consensus        93 ~~~~~~n~li~~---~~~~g~~~-~A~~l~~~~~~~~p~~~t-~~~---ll~~~~~~~-------~~~~a~~~~~~m~~~  157 (475)
                      .-+..|..+...   ..+.|.+. +|++++.......|+..| |+.   +|....+..       .++++..+++.+...
T Consensus        24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~  103 (331)
T 3dss_A           24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  103 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence            345566666554   34667665 899999998887788776 432   333333321       267888999988876


Q ss_pred             CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHH
Q 038373          158 AFVKDVELNNKLIEMYGKCC--NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQ-GADGLMLFEQMRKTGPHPDKET  231 (475)
Q Consensus       158 g~~p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~t  231 (475)
                      . +-+..+|+----.+.+.|  .++++..+++.+.+   +|-.+|+--.-.+...|. ++++++.++++.+..+. |...
T Consensus       104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA  181 (331)
T 3dss_A          104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS  181 (331)
T ss_dssp             C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred             C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence            5 567888888777788888  48999999998874   477899988888888888 59999999999987543 7777


Q ss_pred             HHHHHHHHHcc--------------CCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc-----------CCHHHHH
Q 038373          232 FLVVFAACASA--------------EAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA-----------GHLIEAE  285 (475)
Q Consensus       232 ~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~-----------g~~~~A~  285 (475)
                      |+..-..+.+.              +.++++.+.+.....   ..| |...|+-+--.+.+.           +.++++.
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el  258 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL  258 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence            87766665554              457888888888773   345 566676555555555           5688999


Q ss_pred             HHHHhC-CCCCCHHHHHHHHHHH-----HHcCCchHHHHHHHHHhccCCCC
Q 038373          286 EFVERM-PFEPTVEVWEALRNFA-----QIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       286 ~~~~~m-~~~p~~~t~~~li~~~-----~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      +.++++ ...||. .|+.+-.+.     ...|..++....++.+.+++|..
T Consensus       259 ~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r  308 (331)
T 3dss_A          259 ESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  308 (331)
T ss_dssp             HHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence            999888 556775 455322221     12455545555666666666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.71  E-value=0.0011  Score=54.32  Aligned_cols=97  Identities=13%  Similarity=-0.020  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      .+...|..+...+.+.|++++|.+.|++.....|+    ...|..+-.++...|++++|...++...+.. ..+...+..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            56778888888999999999999999988776787    4566777777778888888888888776653 335666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc
Q 038373          169 LIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      +..+|.+.|++++|...|++..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            7777777777777777776554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.71  E-value=0.00052  Score=56.86  Aligned_cols=126  Identities=10%  Similarity=-0.056  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGP-HPD----KE  230 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~  230 (475)
                      ++..+-..|...|++++|...|++..+     .+    ..+|+.+...|...|++++|.+.|++..+..- .++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            444455555555555555555554431     11    12555566666666666666666665443110 011    23


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKND---YGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVER  290 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~  290 (475)
                      .+..+-..+...|++++|.+.++...+.   .+-.+ ....+..+-..|...|+.++|.+.+++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4455555556666666666665554421   11111 123455555666666666666666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.69  E-value=0.00025  Score=59.43  Aligned_cols=92  Identities=12%  Similarity=-0.132  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHh
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAA  206 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~  206 (475)
                      .+..+-..+.+.|++++|...|+...+.. ..+...+..+-.+|.+.|++++|...|++..+  | +...|..+-.+|..
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            45556666777788888888887777654 44677777777788888888888888877652  3 56677778888888


Q ss_pred             cCChHHHHHHHHHHHH
Q 038373          207 NGQGADGLMLFEQMRK  222 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~  222 (475)
                      .|++++|.+.|++..+
T Consensus       102 ~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          102 XGELAEAESGLFLAQE  117 (148)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8888888888877765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00097  Score=53.48  Aligned_cols=86  Identities=9%  Similarity=-0.059  Sum_probs=39.1

Q ss_pred             HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHH
Q 038373          136 DSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGAD  212 (475)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~  212 (475)
                      ..+.+.|++++|...|....+.. +.+...|..+-.+|.+.|++++|...|++..+  | +...|..+-.+|...|++++
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~   90 (126)
T 3upv_A           12 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS   90 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHH
Confidence            33444444444444444444332 22344444444444444555555444444331  2 33444444555555555555


Q ss_pred             HHHHHHHHHH
Q 038373          213 GLMLFEQMRK  222 (475)
Q Consensus       213 A~~l~~~M~~  222 (475)
                      |++.|++..+
T Consensus        91 A~~~~~~al~  100 (126)
T 3upv_A           91 ALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.67  E-value=0.001  Score=53.93  Aligned_cols=104  Identities=8%  Similarity=-0.036  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ..|...=..|.+.|++++|++.|++.....| +...|..+-.++.+.|++++|...++..++.. ..+...|..+-.+|.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            4677777789999999999999998766555 56778889999999999999999999998875 567889999999999


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLM  200 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~l  200 (475)
                      +.|++++|.+.|++..+  | |...+..|
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            99999999999998753  4 44444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.67  E-value=0.0035  Score=62.84  Aligned_cols=182  Identities=12%  Similarity=0.038  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHhcccCC-CCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           97 SLDVNLLSLCKEG---KVREAIEYMGQDASAS-AGYDVFSSLLDSCGNL----KSIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        97 ~~n~li~~~~~~g---~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      .+..|-..|.+.|   +.++|++.|++....+ ++...+..|-..|...    ++.++|.+.|+... .|   +...+..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence            7778888888999   9999999999877666 4444445566666554    79999999999987 44   4566666


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          169 LIEM-Y--GKCCNTRLARKVFDQLRKR-NLSSWHLMISGYAANG-----QGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       169 Li~~-~--~k~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      |-.+ |  ...|+.++|.+.|++.-+. +...+..|-..|. .|     ++++|++.|++-. .   -+...+..|-..|
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence            7666 4  4689999999999987655 6678888888777 56     9999999999876 3   3556666666666


Q ss_pred             Hc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 038373          240 AS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM  291 (475)
Q Consensus       240 ~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m  291 (475)
                      ..    ..+.++|...|+...+. |. +  ..+..|-.+|..    ..+.++|..+|+.-
T Consensus       329 ~~G~g~~~d~~~A~~~~~~Aa~~-g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLTAARN-GQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHHHHTT-TC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             HCCCCCCcCHHHHHHHHHHHHhh-Ch-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            55    44999999999998843 53 3  334555555653    45899999999887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.66  E-value=0.0011  Score=56.14  Aligned_cols=25  Identities=12%  Similarity=-0.075  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          267 HYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       267 ~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .|..+-..|.+.|++++|.+.|++.
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3334444444444444444444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.64  E-value=0.00041  Score=58.39  Aligned_cols=96  Identities=8%  Similarity=0.008  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...|..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...|+...+.. +-+...|..+-.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            455778888889999999999999998776555 56678889999999999999999999998875 4567889999999


Q ss_pred             HHHcCCHHHHHHHHHhcc
Q 038373          173 YGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~  190 (475)
                      |.+.|++++|...|+...
T Consensus       114 ~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            999999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.63  E-value=0.00081  Score=68.10  Aligned_cols=111  Identities=11%  Similarity=-0.057  Sum_probs=52.9

Q ss_pred             HHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038373          174 GKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~  249 (475)
                      .+.|++++|.+.|++..+  | +..+|+.+..+|.+.|++++|++.|++..+.  .| +..+|..+-.++...|++++|.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344555555555554331  2 3445555555555555555555555555543  22 3445555555555666666666


Q ss_pred             HHHHHHhhhCCCcCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038373          250 LYFEIMKNDYGIVPG-IEHYIAIIKV--LGSAGHLIEAEEFVE  289 (475)
Q Consensus       250 ~~~~~m~~~~g~~p~-~~~y~~li~~--~~~~g~~~~A~~~~~  289 (475)
                      +.+++..+.   .|+ ...+..+-.+  +.+.|++++|.++++
T Consensus        95 ~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666555422   121 1222222222  555566666666665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.63  E-value=0.00051  Score=60.23  Aligned_cols=135  Identities=10%  Similarity=-0.008  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|..+-..+.+.|++++|++.|++.....|+...+...        ....-.   ..+       ...++..+-.+|.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~---~~~-------~~~~~~~la~~~~   99 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--------ILLDKK---KNI-------EISCNLNLATCYN   99 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------HHHHHH---HHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------hHHHHH---HHH-------HHHHHHHHHHHHH
Confidence            3456666677888888888888888755433321100000        000000   000       0234445555555


Q ss_pred             HcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~  249 (475)
                      +.|++++|...|+...+   .+...|..+-.+|...|++++|++.|++..+.  .| +...+..+...+...++.+++.
T Consensus       100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554432   24445555555666666666666666555543  22 3344445555555555555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.63  E-value=0.0017  Score=50.46  Aligned_cols=92  Identities=12%  Similarity=-0.104  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA  240 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~  240 (475)
                      ..+..+...|...|++++|...|++..+  | +...|..+...|...|++++|...+++..+.. ..+...+..+...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3444455555555566666555555431  2 44555555556666666666666666555532 113445555556666


Q ss_pred             ccCCHHHHHHHHHHHh
Q 038373          241 SAEAVKEGFLYFEIMK  256 (475)
Q Consensus       241 ~~g~~~~a~~~~~~m~  256 (475)
                      ..|++++|...++...
T Consensus        84 ~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            6666666666666555

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.63  E-value=0.00051  Score=53.12  Aligned_cols=90  Identities=8%  Similarity=-0.057  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcc
Q 038373          167 NKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACASA  242 (475)
Q Consensus       167 ~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~~  242 (475)
                      ..+...|.+.|++++|...|++..+   .+...|..+...|...|++++|++.|++..+.... .+...+..+...+...
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence            3334444444444444444443321   13344444445555555555555555554442110 0234444444555555


Q ss_pred             -CCHHHHHHHHHHHh
Q 038373          243 -EAVKEGFLYFEIMK  256 (475)
Q Consensus       243 -g~~~~a~~~~~~m~  256 (475)
                       |++++|.+.+....
T Consensus        90 ~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           90 EGKEVEAEIAEARAK  104 (112)
T ss_dssp             SSCSHHHHHHHHHHG
T ss_pred             hCCHHHHHHHHHHHh
Confidence             55555555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.62  E-value=0.0027  Score=60.05  Aligned_cols=207  Identities=8%  Similarity=-0.022  Sum_probs=154.2

Q ss_pred             CHHHHHHHHHHHHHcC--ChHHHHHHHHhcccCCCCHHH-HHHHHHHH----hcc---CCHHHHHHHHHHHHHcCCCCCH
Q 038373           94 QLESLDVNLLSLCKEG--KVREAIEYMGQDASASAGYDV-FSSLLDSC----GNL---KSIEMGKRVHELLRTSAFVKDV  163 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g--~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~  163 (475)
                      +...||.-=..+...|  ++++++++++......|+..+ |+.--..+    ...   ++++++.++++.+.+.. ..+.
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny  144 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNH  144 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCH
Confidence            4456887777777788  999999999987765565544 44322222    334   78999999999999875 6688


Q ss_pred             HHHHHHHHHHHHcCCHH--HHHHHHHhccc---CCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHHHH
Q 038373          164 ELNNKLIEMYGKCCNTR--LARKVFDQLRK---RNLSSWHLMISGYAANGQ------GADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~--~A~~~f~~m~~---~~~~tyn~li~~~~~~g~------~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      .+++----.+.+.|+.+  ++.+.++.+.+   .|...|+--...+...|+      ++++++.++++..... -|...|
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW  223 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTW  223 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHH
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHH
Confidence            88888888888889888  99999998875   477789887777777776      8999999999988653 378889


Q ss_pred             HHHHHHHHccCCHHH-HHHHHHHHhhhCC-C-cCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHH
Q 038373          233 LVVFAACASAEAVKE-GFLYFEIMKNDYG-I-VPGIEHYIAIIKVLGSAGHLIEAEEFVERMP--FEP-TVEVWEAL  303 (475)
Q Consensus       233 ~~li~~~~~~g~~~~-a~~~~~~m~~~~g-~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~~t~~~l  303 (475)
                      +.+-..+.+.|+... ...+.....+. + . ..+......+.+.|.+.|+.++|.++++.+.  ..| ...-|+..
T Consensus       224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~  299 (306)
T 3dra_A          224 NYLLGIHERFDRSITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ  299 (306)
T ss_dssp             HHHHHHHHHTTCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence            888888888887444 55566665522 2 1 2356778899999999999999999999982  333 23445443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.62  E-value=0.00036  Score=57.91  Aligned_cols=92  Identities=8%  Similarity=-0.048  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHP-DKE  230 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~  230 (475)
                      ++..+...|...|++++|...|++..+     .+    ...|..+...|...|++++|.+.+++..+.    +..+ ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            344444444444555555444444321     11    234555555555666666666655554431    1111 123


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ++..+...+...|++++|.+.+++..
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45555566666666666666665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.60  E-value=0.0016  Score=55.02  Aligned_cols=88  Identities=7%  Similarity=-0.095  Sum_probs=40.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCCh
Q 038373          134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQG  210 (475)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~  210 (475)
                      +-..+.+.|++++|.+.|+...+.. ..+...|..+-.+|.+.|++++|...|++..+  | +...|..+-..|...|++
T Consensus        17 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~   95 (164)
T 3sz7_A           17 EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY   95 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence            3333334444444444444443332 22344444444455555555555555544331  2 344555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 038373          211 ADGLMLFEQMRK  222 (475)
Q Consensus       211 ~~A~~l~~~M~~  222 (475)
                      ++|++.|++..+
T Consensus        96 ~~A~~~~~~al~  107 (164)
T 3sz7_A           96 KGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.60  E-value=0.0015  Score=52.83  Aligned_cols=25  Identities=0%  Similarity=-0.057  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQM  220 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M  220 (475)
                      .|..+...|...|++++|+..|++.
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3444444444444444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.60  E-value=0.00084  Score=55.39  Aligned_cols=84  Identities=8%  Similarity=-0.175  Sum_probs=36.0

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A  213 (475)
                      .+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+...+  | +...|..+-.+|...|++++|
T Consensus        27 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  105 (142)
T 2xcb_A           27 NQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA  105 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            3344444444444444444332 22334444444444444444444444443321  1 333444444444444444444


Q ss_pred             HHHHHHHH
Q 038373          214 LMLFEQMR  221 (475)
Q Consensus       214 ~~l~~~M~  221 (475)
                      .+.|++..
T Consensus       106 ~~~~~~al  113 (142)
T 2xcb_A          106 ESGFYSAR  113 (142)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.59  E-value=0.001  Score=53.90  Aligned_cols=98  Identities=10%  Similarity=-0.091  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI  170 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li  170 (475)
                      ..+...|..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...++...+.. ..+...+..+-
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            35678889999999999999999999998665444 46678888889999999999999999998875 45788999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcc
Q 038373          171 EMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~  190 (475)
                      .+|.+.|++++|...|++..
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999998775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.58  E-value=0.00064  Score=56.11  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...+..+-..+.+.|++++|...|++.....| +...|..+-.++.+.|++++|...|+...+.. +.+...+..+-.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            445666777789999999999999998766555 56668888888999999999999999998875 4567788889999


Q ss_pred             HHHcCCHHHHHHHHHhcc
Q 038373          173 YGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~  190 (475)
                      |...|++++|.+.|+...
T Consensus        96 ~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            999999999999999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.57  E-value=0.0014  Score=60.98  Aligned_cols=124  Identities=10%  Similarity=-0.085  Sum_probs=86.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHc
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYGKC  176 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~k~  176 (475)
                      -.....|...|++++|.++|......+|+....-.+-..+.+.+++++|+..++...+.. .|.  ...+..|-.++.+.
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence            345667889999999999999988777866554444456778888888888887443322 111  23566667778888


Q ss_pred             CCHHHHHHHHHhccc----CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          177 CNTRLARKVFDQLRK----RN--LSSWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       177 g~~~~A~~~f~~m~~----~~--~~tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      |++++|++.|++...    |.  ...+...-.++.+.|+.++|..+|+++...
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            888888888887642    21  225556666777788888888888887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.56  E-value=0.0014  Score=52.98  Aligned_cols=91  Identities=8%  Similarity=-0.007  Sum_probs=44.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC--------HHHHHHH
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RN--------LSSWHLM  200 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~--------~~tyn~l  200 (475)
                      +..+-..+.+.|++++|.+.|.+.++.. +-+..+|+.+-.+|.+.|++++|.+.|++..+  |+        ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3344444555555555555555554442 23344555555555555555555555554331  10        1244444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH
Q 038373          201 ISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      -..|...|++++|++.|++-..
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555555555555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.55  E-value=0.00061  Score=55.24  Aligned_cols=57  Identities=14%  Similarity=0.063  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMR  221 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~  221 (475)
                      .+.-|-+.|.+.|++++|...|++..+  | +...|+.+-.+|.+.|++++|++.|++..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444455555555555555544331  2 34445555555555555555555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.54  E-value=0.00089  Score=51.71  Aligned_cols=90  Identities=6%  Similarity=-0.118  Sum_probs=41.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHh
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAA  206 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~  206 (475)
                      ..+...+...|++++|...++...+.. ..+..++..+...|.+.|++++|...|++..+  |   +...|..+...|.+
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~   88 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY   88 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            333444444455555555555444432 22344444444455555555555555544331  1   23444444455555


Q ss_pred             c-CChHHHHHHHHHHHH
Q 038373          207 N-GQGADGLMLFEQMRK  222 (475)
Q Consensus       207 ~-g~~~~A~~l~~~M~~  222 (475)
                      . |++++|.+.|++...
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           89 IEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             CSSCSHHHHHHHHHHGG
T ss_pred             HhCCHHHHHHHHHHHhh
Confidence            5 555555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.0019  Score=52.76  Aligned_cols=93  Identities=11%  Similarity=-0.056  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHH
Q 038373          194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHY  268 (475)
Q Consensus       194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y  268 (475)
                      ...|..+...+...|++++|++.|++..+.  .|+    ...|..+...+...|++++|...++...+.   .| +...+
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~  102 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKAL  102 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHH
Confidence            344555555555555555555555554442  333    344444555555555555555555554421   22 23444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC
Q 038373          269 IAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..+-..|.+.|+.++|.+.|++.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555555555555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0013  Score=52.69  Aligned_cols=95  Identities=9%  Similarity=-0.067  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+-..+.+.|++++|++.|++.....| +...|..+-.++.+.|++++|...++...+.. +.+...|..+-.+|
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            34677777889999999999999998766555 56778899999999999999999999998875 45688999999999


Q ss_pred             HHcCCHHHHHHHHHhcc
Q 038373          174 GKCCNTRLARKVFDQLR  190 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~  190 (475)
                      .+.|++++|...|++..
T Consensus        83 ~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           83 IAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHH
Confidence            99999999999998765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.41  E-value=0.0024  Score=55.84  Aligned_cols=87  Identities=8%  Similarity=-0.046  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHH
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIK  273 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~  273 (475)
                      ..|..+-.+|.+.|++++|+..+++..+.. ..+...|..+-.++...|++++|...|+...+.   .| +...+..+..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence            456666666777777777777777666542 224556666666666777777777776666522   23 3445555555


Q ss_pred             HHHhcCCHHHHH
Q 038373          274 VLGSAGHLIEAE  285 (475)
Q Consensus       274 ~~~~~g~~~~A~  285 (475)
                      .+...|+.+++.
T Consensus       165 ~~~~~~~~~~~~  176 (198)
T 2fbn_A          165 CVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH
Confidence            555555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.37  E-value=0.0011  Score=53.26  Aligned_cols=91  Identities=14%  Similarity=-0.008  Sum_probs=59.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      ..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...++...+.. ..+...+..|..+|.+.|
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            3444566777777777777777655444 44556666666677777777777777776654 334556666666666666


Q ss_pred             CHHHHHHHHHhcc
Q 038373          178 NTRLARKVFDQLR  190 (475)
Q Consensus       178 ~~~~A~~~f~~m~  190 (475)
                      ++++|...|++..
T Consensus       100 ~~~~A~~~~~~al  112 (121)
T 1hxi_A          100 NANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6777666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0084  Score=59.01  Aligned_cols=184  Identities=9%  Similarity=-0.054  Sum_probs=129.2

Q ss_pred             HHHhccCCHHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCH
Q 038373          136 DSCGNLKSIEMGKRVHELLRTSAFVK-D---------------VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNL  194 (475)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~---------------~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~  194 (475)
                      ..+.+.|++++|.+.|..+.+..-.. +               ...+..|...|.+.|++++|.+.+....+     ++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            34567899999999999998753211 1               12477889999999999999999987753     111


Q ss_pred             ----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC---c
Q 038373          195 ----SSWHLMISGYAANGQGADGLMLFEQMRK----TGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGI---V  262 (475)
Q Consensus       195 ----~tyn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~---~  262 (475)
                          ...+.+-..+...|+.++|.+++++...    .+..+. ..++..+...+...|++++|..++........-   .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                1334444444567889999999988754    344444 347788899999999999999999876633211   1


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCchHHHHH
Q 038373          263 P-GIEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT--VEVWEALRNFAQIHGDVELEDRA  319 (475)
Q Consensus       263 p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~t~~~li~~~~~~g~~~~a~~~  319 (475)
                      + ....|..++..|...|++++|..++++.       +..+.  ...|..+...+...|+++.|...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            2 2567889999999999999999998775       21111  23455555566667888666443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.29  E-value=0.0014  Score=65.84  Aligned_cols=92  Identities=15%  Similarity=-0.022  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAA  238 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~  238 (475)
                      ..+|+.+-.+|.+.|++++|...|++..+   .+...|..+-.+|...|++++|+..|++..+  +.| +...+..+-..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            45666666777777777777777766542   2556777777777777777777777777665  334 33456666666


Q ss_pred             HHccCCHHHHH-HHHHHHh
Q 038373          239 CASAEAVKEGF-LYFEIMK  256 (475)
Q Consensus       239 ~~~~g~~~~a~-~~~~~m~  256 (475)
                      +.+.++.+++. .++..|.
T Consensus       395 ~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            66667666654 3455554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.25  E-value=0.00049  Score=69.73  Aligned_cols=114  Identities=8%  Similarity=-0.093  Sum_probs=81.1

Q ss_pred             HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      .+.+.|++++|++.|++.....| +..+|..+-.++.+.|++++|.+.+++..+.. ..+..++..+-.+|.+.|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            34567888888888887665444 45667888888888888888888888888764 44677888888888888888888


Q ss_pred             HHHHHhccc--C-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 038373          183 RKVFDQLRK--R-NLSSWHLMISG--YAANGQGADGLMLFE  218 (475)
Q Consensus       183 ~~~f~~m~~--~-~~~tyn~li~~--~~~~g~~~~A~~l~~  218 (475)
                      .+.|++..+  | +...|..+-.+  +.+.|++++|+++++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888887653  3 34455555555  777788888888877

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.24  E-value=0.0059  Score=61.29  Aligned_cols=125  Identities=10%  Similarity=0.021  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N---------------LSSWHLMISGYAANGQGADGLMLFEQMRKTG  224 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~---------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g  224 (475)
                      ...+..+-..|.+.|++++|...|++..+  | +               ...|+.+-.+|.+.|++++|+..|++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            44666777788888888888888876642  2 2               4678888888888888888888888877643


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 038373          225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE-EFVERM  291 (475)
Q Consensus       225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~-~~~~~m  291 (475)
                       .-+...|..+-.++...|++++|...|+...   .+.| +...+..+-..+.+.|+.++|. +++.+|
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2256677777788888888888888888776   2344 3456677777777777777665 345555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.21  E-value=0.0025  Score=50.89  Aligned_cols=86  Identities=13%  Similarity=0.024  Sum_probs=49.2

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhc
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDV---ELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAAN  207 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~  207 (475)
                      .+...|++++|...++...+.. +.+.   ..+..+..+|.+.|++++|...|+...+  |+    ...|..+...|.+.
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence            3445555566655555555432 1111   3455555566666666666666665542  22    34566666667777


Q ss_pred             CChHHHHHHHHHHHHc
Q 038373          208 GQGADGLMLFEQMRKT  223 (475)
Q Consensus       208 g~~~~A~~l~~~M~~~  223 (475)
                      |++++|...|++....
T Consensus        90 g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           90 GKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7777777777776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.18  E-value=0.003  Score=50.56  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=42.4

Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVK  246 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~  246 (475)
                      ..+.+.|++++|...|++..+  | +...|..+-..|...|++++|+..|++..+.  .| +...+..+-.++...|+++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~  102 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN  102 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence            344455555555555554432  2 3445555555555555555555555555442  22 3344455555555555555


Q ss_pred             HHHHHHHHHh
Q 038373          247 EGFLYFEIMK  256 (475)
Q Consensus       247 ~a~~~~~~m~  256 (475)
                      +|...++...
T Consensus       103 ~A~~~~~~al  112 (121)
T 1hxi_A          103 AALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.17  E-value=0.0016  Score=66.02  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRK-----TGP-HPDK-ETFLVVFAACASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~-~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~  257 (475)
                      +||.|-..|...|++++|+.++++..+     .|- .|++ .+.+.+-.++...+.+++|+.++..+++
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555554332     121 1222 2333444444555556666666655553

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.15  E-value=0.0018  Score=51.27  Aligned_cols=59  Identities=8%  Similarity=0.011  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      .|..+...|.+.|++++|+..|++..+.... +...+..+..++...|++++|...++..
T Consensus        29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333444444444444444444443332111 2333333334444444444444444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.11  E-value=0.019  Score=58.12  Aligned_cols=199  Identities=12%  Similarity=0.016  Sum_probs=130.7

Q ss_pred             HHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHhc
Q 038373          112 REAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA-RKVFDQL  189 (475)
Q Consensus       112 ~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A-~~~f~~m  189 (475)
                      +++..+|++..... .+...|-..+.-+.+.|+++.|..++++..+.  +.+...+.    .|+...+.++. ..+.+..
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~  269 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence            34566777755422 34556666677777889999999999999988  33333322    33333221221 1111111


Q ss_pred             c------------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHH
Q 038373          190 R------------KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL--VVFAACASAEAVKEGFLYFEIM  255 (475)
Q Consensus       190 ~------------~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~--~li~~~~~~g~~~~a~~~~~~m  255 (475)
                      .            ......|-..+.-+.+.|..+.|..+|+.....+  .+...|.  +.+.... .++.+.|..+|+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~a  346 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSG  346 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHH
Confidence            0            0112467777777777888999999999882222  2333443  3333322 23699999999998


Q ss_pred             hhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          256 KNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       256 ~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      .+.++-.|  ..+...++...+.|+.+.|..+|++..  .....|...+..=...|+.+.+..+++..
T Consensus       347 l~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          347 LLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             HHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            86543333  346678888899999999999999983  36888999999888899997776655544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.11  E-value=0.0014  Score=63.00  Aligned_cols=143  Identities=13%  Similarity=-0.062  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      ...|..+-..+.+.|++++|+..|++.....|+...       +...++.+++...+.          ...|+.+-.+|.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence            345666666777888888888888876654455432       122222332222111          125677777778


Q ss_pred             HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH-HHccCCHHHHH
Q 038373          175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAA-CASAEAVKEGF  249 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~-~~~~g~~~~a~  249 (475)
                      +.|++++|...|++..+  | +...|..+-.+|...|++++|+..|++..+  +.|+.. .+..+... ....+..+++.
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888776542  3 566777788888888888888888877654  334332 33333333 12345566677


Q ss_pred             HHHHHHh
Q 038373          250 LYFEIMK  256 (475)
Q Consensus       250 ~~~~~m~  256 (475)
                      .+|..|.
T Consensus       320 ~~~~~~l  326 (338)
T 2if4_A          320 EMYKGIF  326 (338)
T ss_dssp             -------
T ss_pred             HHHHHhh
Confidence            7777765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.10  E-value=0.0023  Score=64.84  Aligned_cols=118  Identities=8%  Similarity=-0.114  Sum_probs=85.3

Q ss_pred             HHcCCHHHHHHHHHhccc----------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHH
Q 038373          174 GKCCNTRLARKVFDQLRK----------RN-LSSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFLVV  235 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~----------~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~~l  235 (475)
                      -..|++++|+.++++..+          |+ ..++|.|...|...|++++|..++++..+-     | -.|+ ..+|+.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            356778888777765531          22 237888899999999999998888886541     2 1233 3578999


Q ss_pred             HHHHHccCCHHHHHHHHHHHhh----hCCCc-CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          236 FAACASAEAVKEGFLYFEIMKN----DYGIV-PG-IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       236 i~~~~~~g~~~~a~~~~~~m~~----~~g~~-p~-~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      -..|...|++++|+.++++..+    .+|-. |+ ..+.+.|-..+...|++++|+.++.++
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876542    23432 22 345667778888889999999999887

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.09  E-value=0.00091  Score=53.09  Aligned_cols=83  Identities=14%  Similarity=-0.024  Sum_probs=48.8

Q ss_pred             cCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373          141 LKSIEMGKRVHELLRTSAF--VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM  215 (475)
Q Consensus       141 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~  215 (475)
                      .|++++|...|+...+.+.  +.+..++..|-..|.+.|++++|...|++..+  | +...|..+..+|.+.|++++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            3555566666666655431  22345566666666667777777777766542  3 45566667777777777777777


Q ss_pred             HHHHHHHc
Q 038373          216 LFEQMRKT  223 (475)
Q Consensus       216 l~~~M~~~  223 (475)
                      .|++....
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77666553

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.08  E-value=0.015  Score=46.09  Aligned_cols=87  Identities=11%  Similarity=-0.026  Sum_probs=51.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccc--CC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRK--RN-L---SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD----KETFLVVFAA  238 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~--~~-~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~li~~  238 (475)
                      +...+.+.|++++|...|++..+  |+ .   ..|..+...|.+.|++++|...|++.....  |+    ...+..+-.+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence            33455566667777666666542  32 2   255556666666666666666666665532  22    3445555566


Q ss_pred             HHccCCHHHHHHHHHHHhh
Q 038373          239 CASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~~m~~  257 (475)
                      +...|++++|...|+.+.+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.06  E-value=0.0057  Score=59.61  Aligned_cols=116  Identities=10%  Similarity=0.029  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLRK-------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~  225 (475)
                      .+..+-..|.+.|++++|.+.|++..+                   .+..+|+.+-.+|.+.|++++|++.+++..+.  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            355555666677777777776665432                   13345666666666666666666666666553  


Q ss_pred             CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH
Q 038373          226 HP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       226 ~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~  285 (475)
                      .| +...|..+-.++...|++++|...|+...+   +.| +...+..+-..+.+.++.+++.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            23 344555566666666666666666665552   223 3344445555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.96  E-value=0.0081  Score=50.39  Aligned_cols=59  Identities=10%  Similarity=0.001  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .+|..+-.+|.+.|++++|...++...+  | +...|..+-.+|...|++++|...|++..+
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            4455555555556666666655554432  2 444555555666666666666666655554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.91  E-value=0.0036  Score=60.18  Aligned_cols=60  Identities=5%  Similarity=-0.103  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .|+.+-.+|.+.|++++|+..|++..+.. .-+...|..+-.++...|++++|...|+...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555555555555555555555544421 1134445555555555555555555555444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0021  Score=49.76  Aligned_cols=94  Identities=6%  Similarity=-0.027  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-------HH
Q 038373          194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-------IE  266 (475)
Q Consensus       194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------~~  266 (475)
                      ...|..+-..+.+.|++++|++.|++..+.. ..+...|..+-.++.+.|++++|...++...   .+.|+       ..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence            3456666666777777777777777766542 1245566666667777777777777777766   23443       33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          267 HYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       267 ~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .+..+-..+...|+.++|.+.|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            3444445555555555555555444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.88  E-value=0.011  Score=57.43  Aligned_cols=87  Identities=11%  Similarity=-0.016  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFA  237 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~  237 (475)
                      +..+|+.+-.+|.+.|++++|...+++..+  | +...|..+-.+|...|++++|++.|++..+.  .| +...+..+-.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            456778888888889999999988887653  3 5678888888899999999999999888774  34 4556666666


Q ss_pred             HHHccCCHHHHHH
Q 038373          238 ACASAEAVKEGFL  250 (475)
Q Consensus       238 ~~~~~g~~~~a~~  250 (475)
                      .+...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.86  E-value=0.016  Score=48.44  Aligned_cols=61  Identities=11%  Similarity=0.045  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ..|..+-.+|.+.|++++|+..+++..+.. .-+...|..+-.++...|++++|...|+...
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            456666666666666666666666655532 1234455566666666666666666666555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.84  E-value=0.048  Score=52.24  Aligned_cols=197  Identities=11%  Similarity=-0.020  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHHHHHHcC-ChHHHHHHHHhcccCCCCHH-HHHHHHHHHhcc-C-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEG-KVREAIEYMGQDASASAGYD-VFSSLLDSCGNL-K-SIEMGKRVHELLRTSAFVKDVELNNK  168 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g-~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~  168 (475)
                      -+...||.-=..+...| .+++++++++.+....|... +|+.---.+.+. + +++++.++++.+.+.. ..|..+++-
T Consensus        86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~  164 (349)
T 3q7a_A           86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAY  164 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            34556777666777778 59999999999877666554 466555555554 5 7899999999998765 557777776


Q ss_pred             HHHHHHHcCCHH--------HHHHHHHhccc---CCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHH
Q 038373          169 LIEMYGKCCNTR--------LARKVFDQLRK---RNLSSWHLMISGYAANGQ-------GADGLMLFEQMRKTGPHPDKE  230 (475)
Q Consensus       169 Li~~~~k~g~~~--------~A~~~f~~m~~---~~~~tyn~li~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~  230 (475)
                      -.-.+.+.|..+        ++.+.++++.+   .|...|+-.-..+.+.++       ++++++.++++..... -|..
T Consensus       165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~S  243 (349)
T 3q7a_A          165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVS  243 (349)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHH
Confidence            555555555555        88888888764   477899998888888776       6899999999887542 2677


Q ss_pred             HHHHHHHHHHccCCH--------------------HHHHHHHHHHhhhCC----CcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373          231 TFLVVFAACASAEAV--------------------KEGFLYFEIMKNDYG----IVPGIEHYIAIIKVLGSAGHLIEAEE  286 (475)
Q Consensus       231 t~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~g----~~p~~~~y~~li~~~~~~g~~~~A~~  286 (475)
                      .|+.+-..+.+.|.-                    ....+....+....+    -.+.......|.+.|...|+.++|.+
T Consensus       244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~  323 (349)
T 3q7a_A          244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK  323 (349)
T ss_dssp             HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence            787766666555542                    333333333332110    02466777899999999999999999


Q ss_pred             HHHhC
Q 038373          287 FVERM  291 (475)
Q Consensus       287 ~~~~m  291 (475)
                      +++.+
T Consensus       324 ~~~~l  328 (349)
T 3q7a_A          324 VFEKL  328 (349)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99988

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0014  Score=50.86  Aligned_cols=61  Identities=20%  Similarity=0.042  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373           96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRT  156 (475)
Q Consensus        96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  156 (475)
                      ..|..+-..+.+.|++++|++.|++.....| +...+..+-.++.+.|++++|.+.++...+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3444444455555555555555554333222 333344444444555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.62  E-value=0.049  Score=56.17  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             HcCC-hHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373          107 KEGK-VREAIEYMGQDASASAGYDV-FSSLLDSCGNLKS----------IEMGKRVHELLRTSAFVKDVELNNKLIEMYG  174 (475)
Q Consensus       107 ~~g~-~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~  174 (475)
                      +.|. -++|++.+++.....|+..+ |+.-=.++.+.++          ++++.+.++.+.+.. .-+..+|+----.+.
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  118 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3443 45677777776665565554 4433233333333          555555555555443 334444444444444


Q ss_pred             HcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 038373          175 KCC--NTRLARKVFDQLRK---RNLSSWHLMISGYAANG-QGADGLMLFEQMRK  222 (475)
Q Consensus       175 k~g--~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g-~~~~A~~l~~~M~~  222 (475)
                      +.|  ++++|.+.++++.+   +|..+|+.--..+.+.| .++++++.++++.+
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~  172 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  172 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            444  44555555554442   24445554444444444 44555555554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.52  E-value=0.16  Score=54.18  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             HHHHcCChHHHHH-HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          104 SLCKEGKVREAIE-YMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       104 ~~~~~g~~~~A~~-l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      .....+++++|.+ ++..+    |+...+..++..+-+.|..+.|.++.+.-.            .-.......|++++|
T Consensus       608 ~~~~~~~~~~a~~~~l~~i----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV----EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC----CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHhcC----CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence            3446899999988 65433    213344778888888999999887764221            113456778999999


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          183 RKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       183 ~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      .++.+.+.  +...|..|-..+.+.|+++.|.+.|..+..         |..+...+...|+.+...++-+....+ |  
T Consensus       672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~--  737 (814)
T 3mkq_A          672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G--  737 (814)
T ss_dssp             HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T--
T ss_pred             HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C--
Confidence            99987774  557999999999999999999999998853         334444555577777766665555422 3  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373          263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMP  292 (475)
Q Consensus       263 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~  292 (475)
                          -++.-...|.+.|++++|.+++.+++
T Consensus       738 ----~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          738 ----KFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             ----chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                24556666888888888888888886

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.51  E-value=0.02  Score=48.15  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---------cC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLR---------KR-NLSSW----HLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~---------~~-~~~ty----n~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .|+.+-.++.+.|++++|...|++..         .| +...|    ...-.++...|++++|+..|++-.+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555556666666666655555432         23 33466    7777788888888888888887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.51  E-value=0.02  Score=46.93  Aligned_cols=106  Identities=8%  Similarity=-0.060  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 038373          143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLF  217 (475)
Q Consensus       143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~  217 (475)
                      ++++|.+.|+...+.| .++..    |-.+|...+.+++|.+.|++.-+ -+...++.|-..|..    .++.++|++.|
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            3444444444444444 22222    33333333444444444443332 233444444444444    44455555555


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHh
Q 038373          218 EQMRKTGPHPDKETFLVVFAACAS----AEAVKEGFLYFEIMK  256 (475)
Q Consensus       218 ~~M~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~  256 (475)
                      ++-.+.|   +...+..|-..|..    .++.++|.+.|+...
T Consensus        85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            5544433   23334444444444    455555555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.45  E-value=0.016  Score=44.34  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373          163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQM  220 (475)
Q Consensus       163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M  220 (475)
                      ...+..+-..|.+.|++++|...|++..+  | +...|..+-.+|.+.|++++|.+.|++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444555555555555555544432  2 3334555555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.44  E-value=0.013  Score=45.77  Aligned_cols=75  Identities=12%  Similarity=0.057  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      +...++...+.. ..+...+..+-..|.+.|++++|...|++..+  | +...|..+-..|...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444432 23455555566666666666666666655432  2 344566666666666666666666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.42  E-value=0.026  Score=47.48  Aligned_cols=88  Identities=8%  Similarity=-0.107  Sum_probs=48.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccc--CC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC
Q 038373          169 LIEMYGKCCNTRLARKVFDQLRK--RN-------------LSSWHLMISGYAANGQGADGLMLFEQMRKT-----GPHPD  228 (475)
Q Consensus       169 Li~~~~k~g~~~~A~~~f~~m~~--~~-------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g~~pd  228 (475)
                      +-..+.+.|++++|...|++..+  |+             ...|+.+-.++.+.|++++|+..+++-++.     -+.||
T Consensus        17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            33444555555555555554331  22             226777777777777777777777666552     11454


Q ss_pred             H-HHH----HHHHHHHHccCCHHHHHHHHHHHh
Q 038373          229 K-ETF----LVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       229 ~-~t~----~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      . ..|    ...-.++...|++++|...|+...
T Consensus        97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            3 244    555556666666666666665544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.32  E-value=0.4  Score=45.54  Aligned_cols=189  Identities=12%  Similarity=0.056  Sum_probs=130.4

Q ss_pred             hccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373          139 GNLKSI-EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN----------TRLARKVFDQLRK---RNLSSWHLMISGY  204 (475)
Q Consensus       139 ~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~----------~~~A~~~f~~m~~---~~~~tyn~li~~~  204 (475)
                      .+.|.+ ++|.++.+.+.... +-+..++|.-=..+...|.          ++++..+++.+..   ++..+|+.--..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345555 47899999998764 2334445533222222222          6788888888763   4777999888888


Q ss_pred             HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc---
Q 038373          205 AANGQ--GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA-VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA---  278 (475)
Q Consensus       205 ~~~g~--~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~---  278 (475)
                      .+.|+  +++++++++.|.+... -|...|+.--..+...|. ++++.+.++.+.+. ... |...|+..-..+.+.   
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~-N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFS-NYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSC-CHHHHHHHHHHHHHHSCC
T ss_pred             hccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHhhhc
Confidence            88884  8999999999998653 378888888778888888 68999999999854 332 566666555555544   


Q ss_pred             -----------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc-----------CCchHHHHHHHHHhccCCCCh
Q 038373          279 -----------GHLIEAEEFVERM--PFEPTVEVWEALRNFAQIH-----------GDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       279 -----------g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~-----------g~~~~a~~~~~~l~~~~~~~~  331 (475)
                                 +.++++.+.+++.  -..-|...|+-+-..+.+.           +.++.+.+.++.+.+++|+..
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~  272 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK  272 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence                       4578888888877  2234778888665544443           345566777777778887753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.30  E-value=0.038  Score=45.16  Aligned_cols=111  Identities=11%  Similarity=-0.007  Sum_probs=85.7

Q ss_pred             cCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 038373          108 EGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK----CCNTRLA  182 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k----~g~~~~A  182 (475)
                      .+++++|++.|++....+ |+..    |-..|...+.+++|.+.|+...+.|   +...++.|-.+|.+    .++.++|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            356788889888766555 4433    5555666677888999999888875   56778888888888    7899999


Q ss_pred             HHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 038373          183 RKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       183 ~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~  225 (475)
                      .+.|++.-+ -+...+..|-..|..    .++.++|++.|++-.+.|.
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999987654 467788888888888    7889999999988887764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.25  E-value=0.035  Score=40.73  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+-..+.+.|++++|+..|++.....| +...+..+-.++.+.|++++|.+.+++..+.. ..+..++..+-..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34455555556666666666666655443222 33344555555555555555555555555432 22334444443333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.23  E-value=0.032  Score=43.48  Aligned_cols=77  Identities=6%  Similarity=-0.131  Sum_probs=61.5

Q ss_pred             HHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373          113 EAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       113 ~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~  190 (475)
                      +|++.|++.....| +...+..+-..+...|++++|...++...+.. ..+...|..+-.+|.+.|+.++|...|++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677776655444 55667888888889999999999999988765 4567788889999999999999999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.08  E-value=0.35  Score=48.75  Aligned_cols=183  Identities=16%  Similarity=0.041  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---------CCCC--
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS---------AFVK--  161 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---------g~~p--  161 (475)
                      .+...|-..+.-+.+.|++++|.++|++.... |+...+-.   .++.....++.   ++.+.+.         +..+  
T Consensus       211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~  283 (493)
T 2uy1_A          211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSK  283 (493)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhccc
Confidence            33667877788888999999999999987766 76544322   22222122221   2222211         0001  


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--HHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 038373          162 -DVELNNKLIEMYGKCCNTRLARKVFDQLRKRN--LSSWH--LMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVV  235 (475)
Q Consensus       162 -~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~--~~tyn--~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~l  235 (475)
                       ...+|-..++.+-+.+.++.|+.+|+....++  ...|-  +.+.-.+ .++.+.|..+|+...+.-  |+ ...+...
T Consensus       284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~y  360 (493)
T 2uy1_A          284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence             12456667777777889999999999885443  22332  3333222 346999999999988753  33 3345566


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          236 FAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ++-..+.|+.+.|..+|+... +     ....|...++.-...|+.+.+.+++++.
T Consensus       361 id~e~~~~~~~~aR~l~er~~-k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          361 FLFLLRIGDEENARALFKRLE-K-----TSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSC-C-----BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            777788999999999999874 2     4677888888888889999999988776

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.87  E-value=0.085  Score=38.53  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC  239 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~  239 (475)
                      ..+..+-..|.+.|++++|...|++..+   .+...|..+...|.+.|++++|+..|++..+... -+...+..+-..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            3455555556666666666666655432   2445566666666666666666666666655321 1334444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.74  E-value=0.44  Score=49.00  Aligned_cols=166  Identities=11%  Similarity=0.005  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHHHhcC-
Q 038373          143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN----------TRLARKVFDQLRK---RNLSSWHLMISGYAANG-  208 (475)
Q Consensus       143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~----------~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g-  208 (475)
                      .-++|.+.++.+.+.. .-+..+|+.-=..+.+.|+          +++|.+.++.+.+   ++..+|+.--..+.+.| 
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            3467888898888765 3455666665555656666          8999999998874   46779999888888999 


Q ss_pred             -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc-------
Q 038373          209 -QGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE-AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA-------  278 (475)
Q Consensus       209 -~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~-------  278 (475)
                       +++++++.+++|.+.... |...|+.--..+.+.| .++++.+.++.+.+   ..| |...|+..-..+.+.       
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccc
Confidence             669999999999997543 7889998888888888 89999999998883   233 566777666655553       


Q ss_pred             -------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCc
Q 038373          279 -------GHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDV  313 (475)
Q Consensus       279 -------g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~  313 (475)
                             +.+++|.+.+++. ... -|...|+-+-..+.+.+..
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence                   5678898888776 223 3677888877666665553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.73  E-value=0.05  Score=54.00  Aligned_cols=80  Identities=6%  Similarity=-0.098  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHhccc-------C---CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHH
Q 038373          177 CNTRLARKVFDQLRK-------R---NL-SSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFLVVFAA  238 (475)
Q Consensus       177 g~~~~A~~~f~~m~~-------~---~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~~li~~  238 (475)
                      |++++|..++++..+       +   ++ .++|.|...|...|++++|+.++++..+-     | -.|+ ..+|+.|-..
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            456666666654321       1   22 36777777777777777777777776531     2 1233 3467777777


Q ss_pred             HHccCCHHHHHHHHHHHh
Q 038373          239 CASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       239 ~~~~g~~~~a~~~~~~m~  256 (475)
                      |...|++++|+.++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            777777777777776544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.50  E-value=0.11  Score=39.34  Aligned_cols=60  Identities=15%  Similarity=-0.016  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL  189 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m  189 (475)
                      ..+..+-.++.+.|++++|...|+...+.. ..+...|..|-.+|.+.|++++|.+.|++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444555555555555555555555443 223445555555566666666666555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.39  E-value=0.045  Score=54.29  Aligned_cols=83  Identities=7%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhh----hCCC-cCC-HHHHHHHHHHH
Q 038373          209 QGADGLMLFEQMRK---TGPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKN----DYGI-VPG-IEHYIAIIKVL  275 (475)
Q Consensus       209 ~~~~A~~l~~~M~~---~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~-~p~-~~~y~~li~~~  275 (475)
                      ++++|+.++++..+   .-+.|+    ..|++.|..+|...|++++|+.++++..+    .+|- -|+ ..+|+.|-..|
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            57788888877654   223333    35899999999999999999999887652    1332 233 46789999999


Q ss_pred             HhcCCHHHHHHHHHhC
Q 038373          276 GSAGHLIEAEEFVERM  291 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m  291 (475)
                      ...|++++|+.++++.
T Consensus       393 ~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          393 MGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHH
Confidence            9999999999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.35  E-value=0.059  Score=53.45  Aligned_cols=85  Identities=7%  Similarity=-0.029  Sum_probs=51.9

Q ss_pred             HHHHcCCHHHHHHHHHhccc-------C---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK-------R---N-LSSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFL  233 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~-------~---~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~  233 (475)
                      -+.+.|++++|..++++..+       +   + ..+++.|...|...|++++|+.++++...-     | -.|+ ..+|+
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34456667777776665431       1   1 236777777777777777777777765431     1 1222 34677


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHh
Q 038373          234 VVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       234 ~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .|-..|...|++++|+.++++..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            77777777777777777666544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.30  E-value=0.55  Score=45.04  Aligned_cols=136  Identities=7%  Similarity=-0.024  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH----cC----C---HHHHHHHHHh
Q 038373          126 AGYDVFSSLLDSCGNL-----KSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGK----CC----N---TRLARKVFDQ  188 (475)
Q Consensus       126 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k----~g----~---~~~A~~~f~~  188 (475)
                      .|...|...+.+....     .++.+|..+|++..+.  .|+ ...|..+--+|.-    .+    .   +..|.+-...
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            3555677777665422     3457888888888876  454 3444443333321    00    0   1111111111


Q ss_pred             cc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH
Q 038373          189 LR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE  266 (475)
Q Consensus       189 m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~  266 (475)
                      +.  ..+..+|.++-..+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.+++..   .+.|...
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcC
Confidence            11  2255566666555555677777777777766654  666666555566666677777776666655   2345444


Q ss_pred             HH
Q 038373          267 HY  268 (475)
Q Consensus       267 ~y  268 (475)
                      ||
T Consensus       345 t~  346 (372)
T 3ly7_A          345 TL  346 (372)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.29  E-value=0.035  Score=46.62  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcc--cC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373          179 TRLARKVFDQLR--KR-NLSSWHLMISGYAAN-----------GQGADGLMLFEQMRKTGPHPDKETFLVVFAA  238 (475)
Q Consensus       179 ~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~-----------g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~  238 (475)
                      +++|...|++..  .| +..+|+.+-.+|...           |++++|++.|++..+  +.|+...|...+..
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            456666666544  23 444666666666655           478888888888777  46776666555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.05  E-value=1.2  Score=47.23  Aligned_cols=145  Identities=11%  Similarity=0.000  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      ...++..+.+.|.+++|+++.+.     |+ .-|    ......|++++|.++.+.+      .+...|..|-..+.+.|
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~~-----~~-~~f----~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~  695 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISPD-----QD-QKF----ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF  695 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCC-----HH-HHH----HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCChHHheecCCC-----cc-hhe----ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence            36677778888888888877642     11 112    2345679999999986543      46789999999999999


Q ss_pred             CHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373          178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN  257 (475)
Q Consensus       178 ~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~  257 (475)
                      +++.|.++|..+..     |..+..-|...|+.+...+                   +.......|+++.|..++...- 
T Consensus       696 ~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~-------------------~~~~a~~~~~~~~A~~~~~~~g-  750 (814)
T 3mkq_A          696 NFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVT-------------------LAKDAETTGKFNLAFNAYWIAG-  750 (814)
T ss_dssp             CHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHH-------------------HHHHHHHTTCHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHH-------------------HHHHHHHcCchHHHHHHHHHcC-
Confidence            99999999887654     3334444444555554333                   3344455667777777765443 


Q ss_pred             hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373          258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP  292 (475)
Q Consensus       258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~  292 (475)
                      +         +...+++|.+.|++++|..+-+..+
T Consensus       751 ~---------~~~a~~~~~~~~~~~~A~~lA~~~~  776 (814)
T 3mkq_A          751 D---------IQGAKDLLIKSQRFSEAAFLGSTYG  776 (814)
T ss_dssp             C---------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             C---------HHHHHHHHHHcCChHHHHHHHHHhC
Confidence            1         4567788888899999999888875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.97  E-value=0.089  Score=52.14  Aligned_cols=88  Identities=11%  Similarity=0.044  Sum_probs=68.8

Q ss_pred             HHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh----CCC-cCC-HHHHHH
Q 038373          204 YAANGQGADGLMLFEQMRKT---GPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKND----YGI-VPG-IEHYIA  270 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~g~-~p~-~~~y~~  270 (475)
                      +.+.|++++|+.++++..+.   -+.|+    ..+++.|..+|...|++++|+.++++...-    +|- -|+ ..+|+.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44678999999999988753   23333    358899999999999999999998876521    232 333 567899


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 038373          271 IIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~m  291 (475)
                      |-..|...|++++|+.++++.
T Consensus       377 La~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999988876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.53  E-value=0.63  Score=44.63  Aligned_cols=140  Identities=9%  Similarity=-0.058  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHH--HcCC---hHHHHHHHHhcccCCCCH-HHHHHHHHHHhc---cC--CHHHHH---HHHHHHHH-
Q 038373           92 NAQLESLDVNLLSLC--KEGK---VREAIEYMGQDASASAGY-DVFSSLLDSCGN---LK--SIEMGK---RVHELLRT-  156 (475)
Q Consensus        92 ~~~~~~~n~li~~~~--~~g~---~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~---~~--~~~~a~---~~~~~m~~-  156 (475)
                      ..|...|...+.+..  ..+.   ..+|..+|++.....|+- ..|..+--++.-   .+  .-....   +.+..... 
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            456667887777643  3333   578999999987766763 334433333321   11  111111   12221111 


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373          157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL  233 (475)
Q Consensus       157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~  233 (475)
                      ..-..+..+|.++-..+...|++++|...+++..  .++...|..+-..+.-.|++++|.+.|++-..  +.|...||.
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~  347 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY  347 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence            1226688899998887777899999999999876  57877887888889999999999999988777  457766763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.85  E-value=0.26  Score=36.72  Aligned_cols=52  Identities=13%  Similarity=0.213  Sum_probs=27.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          203 GYAANGQGADGLMLFEQMRKTGPHP-DKE-TFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~~g~~p-d~~-t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .+.+.|++++|++.|++..+..  | +.. .|..+-.++...|++++|.+.|+...
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555566666555555432  2 233 45555555555566666666555555

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.84  E-value=0.13  Score=43.10  Aligned_cols=78  Identities=12%  Similarity=0.019  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038373          177 CNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQ----------GADGLMLFEQMRKTGPHP-DKETFLVVFAACASA  242 (475)
Q Consensus       177 g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~----------~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~  242 (475)
                      +.+++|.+.|+...  .| +...|+.+-.++...|+          +++|+..|++..+-  .| +..+|..+-.+|...
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence            34555555555443  12 44455555555555444          34666666666653  34 344566666666555


Q ss_pred             C-----------CHHHHHHHHHHHh
Q 038373          243 E-----------AVKEGFLYFEIMK  256 (475)
Q Consensus       243 g-----------~~~~a~~~~~~m~  256 (475)
                      |           ++++|.+.|++..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl  118 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAV  118 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHH
Confidence            3           4555555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.41  E-value=0.45  Score=35.32  Aligned_cols=54  Identities=13%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373          170 IEMYGKCCNTRLARKVFDQLRK--R-NLS-SWHLMISGYAANGQGADGLMLFEQMRKT  223 (475)
Q Consensus       170 i~~~~k~g~~~~A~~~f~~m~~--~-~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~~  223 (475)
                      ...|.+.|++++|...|++..+  | +.. .|..+-..|...|++++|++.|++..+.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455666777777777776542  3 455 6777777777777777777777777664

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.17  E-value=3.9  Score=33.00  Aligned_cols=65  Identities=6%  Similarity=-0.028  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      -.+.-+..+...|+-++-.++..++.. ..+|+......+-.||.+.|+..++.+++.+.-++ |++
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k  157 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  157 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence            345556666777777777777777533 34566667777777777777777777777776643 653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=91.77  E-value=1.2  Score=36.77  Aligned_cols=78  Identities=5%  Similarity=-0.037  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccCC-----HHHHHHHHHHHHhcCChHHHHH
Q 038373          144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC---NTRLARKVFDQLRKRN-----LSSWHLMISGYAANGQGADGLM  215 (475)
Q Consensus       144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g---~~~~A~~~f~~m~~~~-----~~tyn~li~~~~~~g~~~~A~~  215 (475)
                      +..+.+-|.+..+.| .++..+--.+--++++.+   +++++..+|++.-+.+     ...+=.|--+|.+.|++++|.+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            344555555555555 255555555666666665   4556666666554322     1122233445566666777776


Q ss_pred             HHHHHHH
Q 038373          216 LFEQMRK  222 (475)
Q Consensus       216 l~~~M~~  222 (475)
                      .++...+
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666665

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.65  E-value=5.6  Score=33.68  Aligned_cols=129  Identities=13%  Similarity=0.066  Sum_probs=84.8

Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      +....+|+++.|.++.+++  .+...|..|-......|+++-|.+.|.....         |..+.--|.-.|+.+.-..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3445788899998887776  4567899999999999999999999887642         2233334445667666555


Q ss_pred             HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       251 ~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      +-+....+ |      -+|.-...+.-.|+++++.++|.+.+.-|...      -....+|.-+.|++..+.+
T Consensus        82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            54443322 2      25666677778999999999999987433221      1223367665555554443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.57  E-value=1.2  Score=36.94  Aligned_cols=83  Identities=13%  Similarity=0.109  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHH
Q 038373          211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAE---AVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAE  285 (475)
Q Consensus       211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~  285 (475)
                      ..+.+-|.+....|. ++..+--.+-.++++..   ++++|..+++...++ . .|  +....-.|--+|.+.|++++|.
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            445555655555554 56555555666777766   566787777777744 2 23  1222223334567777777777


Q ss_pred             HHHHhC-CCCCC
Q 038373          286 EFVERM-PFEPT  296 (475)
Q Consensus       286 ~~~~~m-~~~p~  296 (475)
                      +.|+.. .++|+
T Consensus        92 ~y~~~lL~ieP~  103 (152)
T 1pc2_A           92 KYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCC
Confidence            777766 44453

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.90  E-value=2.1  Score=31.92  Aligned_cols=61  Identities=7%  Similarity=-0.079  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          162 DVELNNKLIEMYGKCCN---TRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~---~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      |...+..+-.++...++   .++|..+|++..+  | ++.++..+-..+.+.|++++|+..|+++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444444433332   4555555554432  2 344555555555556666666666665554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=87.18  E-value=2.9  Score=31.65  Aligned_cols=27  Identities=11%  Similarity=0.155  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .|..|..+|.+.|++++|+.++++..+
T Consensus        48 i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            344444444444444444444444433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.85  E-value=6  Score=36.45  Aligned_cols=59  Identities=15%  Similarity=0.154  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-CCHHHHHHHHHHHh
Q 038373          196 SWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHP--DKETFLVVFAACASA-EAVKEGFLYFEIMK  256 (475)
Q Consensus       196 tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~p--d~~t~~~li~~~~~~-g~~~~a~~~~~~m~  256 (475)
                      .|..|..-|.+.     |+.++|.+.|++-.+-  .|  +..++...-..++.. |+.+++.+.+++..
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            555555555552     5566666666555552  23  234444455555553 55666666655555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=86.41  E-value=2.1  Score=32.47  Aligned_cols=26  Identities=12%  Similarity=0.040  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          266 EHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       266 ~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..|..|..+|.+.|++++|..++++.
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34445555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.03  E-value=15  Score=31.07  Aligned_cols=128  Identities=16%  Similarity=0.109  Sum_probs=81.6

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373          139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFE  218 (475)
Q Consensus       139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~  218 (475)
                      .+.|+++.|.++-+++      -+...|..|-+...+.|+++-|++.|.....     |..+.--|.-.|+.++-.++-+
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~   84 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN   84 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence            4568888888887765      3577888888888888999999888888754     3333344555677666554444


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038373          219 QMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPF  293 (475)
Q Consensus       219 ~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~  293 (475)
                      .-...|      -+|.....+-..|+++++.+++.+.    |-.|-..      -..-..|.-+.|.++.+++|.
T Consensus        85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~------~~A~t~g~~~~a~~~~~~~~~  143 (177)
T 3mkq_B           85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPLAY------AVAKANGDEAAASAFLEQAEV  143 (177)
T ss_dssp             HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHH------HHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHHHH------HHHHHcCcHHHHHHHHHHhCC
Confidence            333333      2444455566678888888887543    3322211      112225667788888888753

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.74  E-value=4.9  Score=30.47  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVE  289 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~  289 (475)
                      .-+..+-++.+-...+.|+.....+.+.||.+..++..|.++++.++.+.|-.  ..+|..+++         +-.-+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq---------ElkPtl~   94 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ---------ELRPTLN   94 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH---------HHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH---------HHhhHHH
Confidence            34566667777777899999999999999999999999999999998765443  456888774         4455555


Q ss_pred             hCCC
Q 038373          290 RMPF  293 (475)
Q Consensus       290 ~m~~  293 (475)
                      ++|+
T Consensus        95 ELGI   98 (109)
T 1v54_E           95 ELGI   98 (109)
T ss_dssp             HHTC
T ss_pred             HhCC
Confidence            5553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.71  E-value=5.9  Score=29.39  Aligned_cols=64  Identities=14%  Similarity=-0.027  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHHHcCC---hHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038373           94 QLESLDVNLLSLCKEGK---VREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTS  157 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~---~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  157 (475)
                      |...|..+-.++...++   .++|..+|++.....|+. .....+-..+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34444444444433332   456666665544433433 23444444555556666666666665554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=85.03  E-value=4  Score=37.65  Aligned_cols=50  Identities=10%  Similarity=0.044  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHhcc--cC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC
Q 038373          177 CNTRLARKVFDQLR--KR--NLSSWHLMISGYAAN-GQGADGLMLFEQMRKTGPH  226 (475)
Q Consensus       177 g~~~~A~~~f~~m~--~~--~~~tyn~li~~~~~~-g~~~~A~~l~~~M~~~g~~  226 (475)
                      |+.++|++.|++-.  .|  ++.++......+++. |+.++|.+.+++-......
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            44444444444433  12  244444444444442 4555555555555444433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=83.16  E-value=5.3  Score=38.61  Aligned_cols=128  Identities=11%  Similarity=0.046  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH
Q 038373          127 GYDVFSSLLDSCG---NLKSIEMGKRVHELLRTS--A-FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM  200 (475)
Q Consensus       127 ~~~t~~~ll~~~~---~~~~~~~a~~~~~~m~~~--g-~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l  200 (475)
                      |...|..++....   ..|+.+.+.+.+.+....  | +-++...          ..-++....-++++   =..+...+
T Consensus       111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~----------~~w~~~~r~~l~~~---~~~a~~~~  177 (388)
T 2ff4_A          111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD----------FQFVEPFATALVED---KVLAHTAK  177 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT----------STTHHHHHHHHHHH---HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc----------hhHHHHHHHHHHHH---HHHHHHHH
Confidence            4445666655432   346777777777777653  3 1122110          01111112222222   12345567


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhCCCcCCHHHH
Q 038373          201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK----NDYGIVPGIEHY  268 (475)
Q Consensus       201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~~g~~p~~~~y  268 (475)
                      +..+...|++++|+..+..+.... .-+...|-.+|.++...|+..+|.+.|+...    ++.|+.|...+-
T Consensus       178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            788888999999998888887642 3378889999999999999999998887754    357999987643

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.74  E-value=7.1  Score=31.54  Aligned_cols=82  Identities=7%  Similarity=-0.011  Sum_probs=46.2

Q ss_pred             cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373          108 EGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD  187 (475)
Q Consensus       108 ~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~  187 (475)
                      .|+......-+-.+..   +..-++..|+.....|.-++-.+++..+.... +|+....-.+-++|.|-|+..+|.+++.
T Consensus        74 C~NlKrVi~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           74 CQNLKSVVECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             CSCTHHHHHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            4444444444443322   33345555666666666666666666654322 5566666666666777777777766666


Q ss_pred             hcccCC
Q 038373          188 QLRKRN  193 (475)
Q Consensus       188 ~m~~~~  193 (475)
                      +.-+++
T Consensus       150 ~AC~kG  155 (172)
T 1wy6_A          150 EACKKG  155 (172)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            655443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.62  E-value=12  Score=28.23  Aligned_cols=78  Identities=12%  Similarity=0.065  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .-++|..|-+.+...|.  ...+--+-+..+...|++++|..+.+.+.-||++.|-+|-.  .+.|..+++..-+.+|..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666553  22222222345667788888888888777788888877654  356666666666666666


Q ss_pred             cC
Q 038373          223 TG  224 (475)
Q Consensus       223 ~g  224 (475)
                      +|
T Consensus        98 sg   99 (116)
T 2p58_C           98 SQ   99 (116)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	475
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.001

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 19/192 (9%)

Query: 161 KDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ- 219
           K++ L     +             ++++L         L+   Y    + A+G+      
Sbjct: 97  KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156

Query: 220 -MRKTGPHPDKETFLVVFAACASAE--AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLG 276
             +       +    V  A             F  FE+    YG +P     +A I  L 
Sbjct: 157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLS 214

Query: 277 SAGHLIEAEEFVER------MPFEPTVEVWEALRNFAQIHGDVE----LEDRAEELLGD- 325
                       ER      +P E + E+W     F    GD+     +E R      + 
Sbjct: 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274

Query: 326 --LDPSKAIVDK 335
                +  +VD+
Sbjct: 275 YEGKETALLVDR 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.87
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.6
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.45
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.15
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.08
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.96
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.51
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.92
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.77
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.01
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.88
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.39
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.71
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.83
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	92.07
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	91.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	91.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	91.46
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	90.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.45
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	85.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.6
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.37
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.33

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-10  Score=109.02  Aligned_cols=196  Identities=11%  Similarity=0.018  Sum_probs=140.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAAN  207 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~  207 (475)
                      +..+...+...|++++|...+....+.. +-+..++..+...|...|++++|...|+....   .+...|..+...|.+.
T Consensus       172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  250 (388)
T d1w3ba_         172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC
Confidence            3334444555666667776666665543 33456677777777778888888877776553   3556777777888888


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373          208 GQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE  286 (475)
Q Consensus       208 g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~  286 (475)
                      |++++|++.|++..+.  .| +..+|..+...+...|++++|.+.++....  ....+...+..+...|.+.|++++|.+
T Consensus       251 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             TCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHH
Confidence            8888888888887763  34 456777888888888888888888887763  233456677788888888888888888


Q ss_pred             HHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          287 FVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       287 ~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .|++. .+.|+ ..+|..+-..|.+.|+.++|.+.++...++.|+..
T Consensus       327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            88876 44554 56677777788888888888888887777776653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.2e-10  Score=107.27  Aligned_cols=214  Identities=11%  Similarity=0.084  Sum_probs=181.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      +...+..+...+...|++++|...+++.....|+ ..+|..+...+...|++++|...+....+.+ ..+...+..+...
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  246 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV  246 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence            4567777888899999999999999886654554 4568888899999999999999999998876 5677888889999


Q ss_pred             HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038373          173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF  249 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~  249 (475)
                      |.+.|++++|...|++..+  | +..+|..+...|...|++++|++.|+...... ..+...+..+...+.+.|++++|.
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHH
Confidence            9999999999999998653  3 67799999999999999999999999887653 457788899999999999999999


Q ss_pred             HHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 038373          250 LYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGD  312 (475)
Q Consensus       250 ~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~  312 (475)
                      +.|++..   .+.|+ ...+..+-..|.+.|++++|.+.|++. .+.|+ ...|..|-..|.+.|+
T Consensus       326 ~~~~~al---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         326 RLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999987   34564 667888999999999999999999987 66664 6678888888877664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.4e-10  Score=104.94  Aligned_cols=226  Identities=9%  Similarity=-0.021  Sum_probs=180.1

Q ss_pred             HHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373          102 LLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR  180 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~  180 (475)
                      -..+.+.|++++|+..|++.....|+ ..+|..+-.++...|++++|...+....+.. +-+...+..+...|.+.|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            33578999999999999998776675 5678888999999999999999999998765 446788999999999999999


Q ss_pred             HHHHHHHhccc--CC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc
Q 038373          181 LARKVFDQLRK--RN----------------LSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACAS  241 (475)
Q Consensus       181 ~A~~~f~~m~~--~~----------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~  241 (475)
                      +|.+.+++...  |+                ...+...+..+...+...+|.+.|.+..... -.++...+..+-..+..
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            99999988652  11                1112223344556677889999998877643 23467788888899999


Q ss_pred             cCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHH
Q 038373          242 AEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDR  318 (475)
Q Consensus       242 ~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~  318 (475)
                      .|++++|...++.....   .| +...|..+-..|.+.|++++|.+.|++. ...| +...|..|-..|.+.|+.++|.+
T Consensus       185 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999998733   34 4677888999999999999999999987 3334 57788889999999999999988


Q ss_pred             HHHHHhccCCCCh
Q 038373          319 AEELLGDLDPSKA  331 (475)
Q Consensus       319 ~~~~l~~~~~~~~  331 (475)
                      .++...++.|+..
T Consensus       262 ~~~~al~l~p~~~  274 (323)
T d1fcha_         262 HFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCcCh
Confidence            8888777766553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.5e-09  Score=96.16  Aligned_cols=227  Identities=9%  Similarity=-0.040  Sum_probs=168.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChH
Q 038373          135 LDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGA  211 (475)
Q Consensus       135 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~  211 (475)
                      -..+.+.|++++|...|+.+.+.. +-+..+|..|..+|.+.|++++|...|++..+  | +...|..+...|...|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            334678899999999999999875 44688999999999999999999999997653  3 6779999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373          212 DGLMLFEQMRKTGPHPDK----------------ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL  275 (475)
Q Consensus       212 ~A~~l~~~M~~~g~~pd~----------------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~  275 (475)
                      +|.+.+++.....  |+.                ......+..+...+...++.+.+........-..+...+..+-..+
T Consensus       105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         105 QACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            9999999987632  221                1111223334455677888888887764323334567788888999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEec
Q 038373          276 GSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEK  353 (475)
Q Consensus       276 ~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (475)
                      ...|++++|...|++. ...| +...|..+-..+...|+.+.|.+.++...++.|+....-.                  
T Consensus       183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------------  244 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY------------------  244 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------------
T ss_pred             HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH------------------
Confidence            9999999999999987 2233 5778888989999999999999999888888776542200                  


Q ss_pred             CeEEEEEccCccchHHHHHHHHHHHHHHcCcccCC
Q 038373          354 NRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDT  388 (475)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~  388 (475)
                          .........|++++|+..|.+-.+  +.|+.
T Consensus       245 ----~lg~~~~~~g~~~~A~~~~~~al~--l~p~~  273 (323)
T d1fcha_         245 ----NLGISCINLGAHREAVEHFLEALN--MQRKS  273 (323)
T ss_dssp             ----HHHHHHHHHTCHHHHHHHHHHHHH--HHHTC
T ss_pred             ----HHHHHHHHCCCHHHHHHHHHHHHH--hCCcC
Confidence                000111225668899988887655  34443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.2e-07  Score=86.42  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=147.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-HHHHHHHHHHHHhcCChHHHHHHH
Q 038373          142 KSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-LSSWHLMISGYAANGQGADGLMLF  217 (475)
Q Consensus       142 ~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-~~tyn~li~~~~~~g~~~~A~~l~  217 (475)
                      +..++|..+|+...+.....+...+...+..+-+.|+++.|..+|+.+.+  | + ...|...+..+.+.|+.++|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34678899999988766666788899999999999999999999998753  2 3 347999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 038373          218 EQMRKTGPHPDKETFLVVFA-ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM----P  292 (475)
Q Consensus       218 ~~M~~~g~~pd~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~  292 (475)
                      ++..+.+.. +...|..... -+...|+.+.|..+|+.+...  ..-+...|...++.+.+.|++++|+.+|++.    +
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            999876533 2333333222 234568999999999999854  3335678999999999999999999999986    3


Q ss_pred             CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          293 FEP--TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       293 ~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                      ..|  ....|...+..-..+|+.+.+..+.+.+.++.|..
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            333  35689999999899999998888888777765544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.1e-07  Score=84.30  Aligned_cols=210  Identities=9%  Similarity=0.057  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEM  172 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~  172 (475)
                      ...|+-+-..+.+.+..++|++++++.....|+..+ |+..-.++...+ ++++|...++...+.. +-+..+|+.+-..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            446777767788999999999999998877776664 777777777766 5999999999998875 5678899999999


Q ss_pred             HHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----
Q 038373          173 YGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA-----  244 (475)
Q Consensus       173 ~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~-----  244 (475)
                      +.+.|+.++|...|+.+.+   .+...|+.+...|.+.|++++|++.|++..+... -|...|+.+-..+.+.+.     
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence            9999999999999998874   4788999999999999999999999999998542 256677766655555444     


Q ss_pred             -HHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc
Q 038373          245 -VKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIH  310 (475)
Q Consensus       245 -~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~  310 (475)
                       +++|.+.+....+   ..| +...|+-+-..|.. ..++++.+.++..    +...+...+..+...|...
T Consensus       201 ~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~  268 (315)
T d2h6fa1         201 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM  268 (315)
T ss_dssp             HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence             6788888887773   345 46666666555544 4467777776655    3234566677777776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.7e-06  Score=80.29  Aligned_cols=181  Identities=12%  Similarity=0.061  Sum_probs=142.5

Q ss_pred             ChHHHHHHHHhcccC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373          110 KVREAIEYMGQDASA-SA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD  187 (475)
Q Consensus       110 ~~~~A~~l~~~~~~~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~  187 (475)
                      ..++|..+|++.... .| +...+...+...-+.|+++.|..+|+.+.+..-.....+|..++..+.+.|+++.|+++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            457888899887653 34 4445677777888999999999999999876533445689999999999999999999999


Q ss_pred             hcccC---CHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC
Q 038373          188 QLRKR---NLSSWHLMISG-YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP  263 (475)
Q Consensus       188 ~m~~~---~~~tyn~li~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p  263 (475)
                      ...+.   +...|-....- +...|+.+.|..+|+.+... ..-+...|...++.+.+.|++++|..+|+...+..+..|
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            87642   33334333322 34468899999999999885 233567899999999999999999999999876545565


Q ss_pred             C--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          264 G--IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       264 ~--~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +  ...|...+.--.+.|+++.+.++++++
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4  457899999889999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4e-06  Score=77.97  Aligned_cols=195  Identities=10%  Similarity=0.041  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHH
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC-NTRLARKVFDQLRK---RNLSSWHLMISGYA  205 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g-~~~~A~~~f~~m~~---~~~~tyn~li~~~~  205 (475)
                      .|+-+-..+.+.+..++|.++++.+++.. +-+...|+..-.++.+.| ++++|...++...+   .+..+|+.+-..+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            45555556777889999999999999875 456778888888888877 59999999998753   47789999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCC----
Q 038373          206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGH----  280 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~----  280 (475)
                      +.|++++|++.|+++.+.. .-+...|..+...+.+.|++++|.+.++.+.+   +.| +...|+.+-..+.+.|.    
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchh
Confidence            9999999999999999853 22688999999999999999999999999983   345 46667766666666665    


Q ss_pred             --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373          281 --LIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK  330 (475)
Q Consensus       281 --~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~  330 (475)
                        +++|.+.+.+. ...| |...|+.+...+.. ...+.+.++++.+.++.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTC
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCc
Confidence              56788887776 3334 67778877665544 44566777777777776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=0.00013  Score=67.08  Aligned_cols=222  Identities=8%  Similarity=-0.073  Sum_probs=159.0

Q ss_pred             HHHHHcCChHHHHHHHHhcccCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 038373          103 LSLCKEGKVREAIEYMGQDASASAG------YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV-KDVELNNKLIE  171 (475)
Q Consensus       103 ~~~~~~g~~~~A~~l~~~~~~~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~Li~  171 (475)
                      ..+...|++++|+++|++.....|+      ...+..+-..+...|++++|...+.+..+.    +-. ....++..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            3467899999999999986554443      235677778889999999999999988653    111 12345667778


Q ss_pred             HHHHcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRK-------R----NLSSWHLMISGYAANGQGADGLMLFEQMRKTG----PHPDKETFLVVF  236 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~-------~----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g----~~pd~~t~~~li  236 (475)
                      .|...|++..|...+.+...       +    ....+..+-..|...|++++|...+.+.....    ......++..+.
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            89999999999998876531       1    12356677788999999999999998887642    223455666777


Q ss_pred             HHHHccCCHHHHHHHHHHHhhh---CCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHH
Q 038373          237 AACASAEAVKEGFLYFEIMKND---YGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-----PTVEVWEALRN  305 (475)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~~---~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~t~~~li~  305 (475)
                      ..+...+...++...+......   .+..+  ....+..+...+...|+.++|.+.+++. ...     .....+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            7788889999988887665432   12111  1334566777889999999999999887 211     22455666778


Q ss_pred             HHHHcCCchHHHHHHHHHh
Q 038373          306 FAQIHGDVELEDRAEELLG  324 (475)
Q Consensus       306 ~~~~~g~~~~a~~~~~~l~  324 (475)
                      .+...|+.+.|...++...
T Consensus       260 ~~~~~g~~~~A~~~~~~al  278 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELN  278 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            8999999988877766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=6.5e-06  Score=73.47  Aligned_cols=196  Identities=10%  Similarity=-0.073  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHh
Q 038373          130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAA  206 (475)
Q Consensus       130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~  206 (475)
                      +|..+-.++.+.|++++|.+.|+..++.. +-+..+|+.+-.+|.+.|++++|...|++..+  | +..+|..+...|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            45555566677777777777777777654 44667777777777778888888877776653  3 45577777777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC----HH
Q 038373          207 NGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH----LI  282 (475)
Q Consensus       207 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~----~~  282 (475)
                      .|++++|.+.|++..+... .+......+.-+..+.+..+....+..... .  ..++...++ ++..+...-.    .+
T Consensus       118 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K--SDKEQWGWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H--SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-c--cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence            7888888887777766431 233333333334444444444444444433 1  112221222 2222221111    11


Q ss_pred             HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          283 EAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       283 ~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      .+...+... ...|+ ..+|..|-..|...|+.+.|.+.++......|...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            222111111 11121 23455566677777888777777776666666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=9.8e-06  Score=72.25  Aligned_cols=196  Identities=9%  Similarity=-0.116  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      ...|..+-..|-+.|++++|++.|++.....| +..+|+.+-.++.+.|++++|...|++..+.. +-+..++..+..+|
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            34666677789999999999999998776555 55678999999999999999999999999875 34567888999999


Q ss_pred             HHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHH
Q 038373          174 GKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA----EAVK  246 (475)
Q Consensus       174 ~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~----g~~~  246 (475)
                      .+.|+.++|...|+...+  | +...+..+..++.+.+..+.+..+........-.+  ..++. +..+...    +..+
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWNI-VEFYLGNISEQTLME  192 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHHH-HHHHTTSSCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhhH-HHHHHHHHHHHHHHH
Confidence            999999999999997653  3 44454445556666666666666666655533222  22222 2222211    1122


Q ss_pred             HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 038373          247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV  297 (475)
Q Consensus       247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  297 (475)
                      .+...+....   ...|+ ..+|..|-..|...|++++|.+.|++. ...|+.
T Consensus       193 ~~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         193 RLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            2222221111   12222 345667788899999999999999987 556654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=0.00022  Score=65.38  Aligned_cols=230  Identities=10%  Similarity=-0.036  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhcccC---CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC-
Q 038373           95 LESLDVNLLSLCKEGKVREAIEYMGQDASA---SAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVKD-  162 (475)
Q Consensus        95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~---~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-  162 (475)
                      ...++.+-..|...|++++|+..|++....   .++.    .++..+...+...|++..+...+......    +.... 
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~  130 (366)
T d1hz4a_          51 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  130 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh
Confidence            346777888899999999999999874431   1222    23566666788889999999988876542    22221 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC
Q 038373          163 --VELNNKLIEMYGKCCNTRLARKVFDQLRK--------RNLSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPD  228 (475)
Q Consensus       163 --~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd  228 (475)
                        ...+..+-..|...|+++.|...++....        ....++..+...+...|+..++...+.+....    +..+.
T Consensus       131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  210 (366)
T d1hz4a_         131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  210 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence              24566677889999999999999987652        13446777778888999999999988776542    11121


Q ss_pred             --HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC
Q 038373          229 --KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP---GIEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT  296 (475)
Q Consensus       229 --~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~  296 (475)
                        ...+..+...+...|+.++|...+...... ....   ....+..+...|...|+.++|.+.+++.       +..|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence              234566667788899999999999877632 2211   2345667888999999999999998875       33343


Q ss_pred             -HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373          297 -VEVWEALRNFAQIHGDVELEDRAEELLGD  325 (475)
Q Consensus       297 -~~t~~~li~~~~~~g~~~~a~~~~~~l~~  325 (475)
                       ...|..+-..|...|+.+.|.+.++.-.+
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             34566677789999999888776655433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=0.00028  Score=64.06  Aligned_cols=192  Identities=9%  Similarity=-0.023  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccC---CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHH
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASA---SAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDVE  164 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~---~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~  164 (475)
                      .|.-.-..|...|++++|.+.|.+....   ..+    ..+|..+-.+|.+.|++++|.+.++...+.    |- .....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            4666666777788888888877654321   011    235677777777778888877777765442    21 11133


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CH
Q 038373          165 LNNKLIEMYGK-CCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-----DK  229 (475)
Q Consensus       165 ~~~~Li~~~~k-~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-----d~  229 (475)
                      ++..+...|-. .|++++|...|++..+     .+    ..+|+.+...|...|++++|++.|++.......-     ..
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            44455555533 4777777777765431     11    2356667777777777777777777765532111     11


Q ss_pred             H-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC------HHHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 038373          230 E-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG------IEHYIAIIKVLGS--AGHLIEAEEFVERM  291 (475)
Q Consensus       230 ~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~y~~li~~~~~--~g~~~~A~~~~~~m  291 (475)
                      . .|...+-.+...|+.+.|...++...+   +.|+      ......|+.+|-.  .+.+++|.+-|+++
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1 122233344556777777777776652   2221      1233455555544  23466777777666

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=0.00014  Score=61.81  Aligned_cols=125  Identities=7%  Similarity=-0.098  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373           97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC  176 (475)
Q Consensus        97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~  176 (475)
                      -||- -..+...|++++|++.|.+...  |+..+|..+-.++...|++++|.+.|++.++.. +-+...|+.+-.+|.+.
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence            3554 3356788999999999988655  788888888888899999999999999988876 55778888888889999


Q ss_pred             CCHHHHHHHHHhccc---C----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373          177 CNTRLARKVFDQLRK---R----------------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       177 g~~~~A~~~f~~m~~---~----------------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~  225 (475)
                      |+.++|.+.|++...   .                ...+|..+-.+|.+.|++++|.+.|.+......
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999999888876421   0                123455566677788888888887777665433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.00014  Score=61.79  Aligned_cols=125  Identities=9%  Similarity=-0.041  Sum_probs=89.1

Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      ..+...|+++.|.+.|+++..++..+|..+-..|...|++++|++.|++-.+.. .-+...|..+-.++.+.|++++|..
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence            345677888888888888888888888888888888888888888888887743 2256678888888888888888888


Q ss_pred             HHHHHhhh-----------CCCc--CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373          251 YFEIMKND-----------YGIV--PG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT  296 (475)
Q Consensus       251 ~~~~m~~~-----------~g~~--p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~  296 (475)
                      .|+.....           .|..  ++ ..++..+-.+|.+.|++++|.+.|+.. ...|+
T Consensus        92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            88776521           0111  11 233445556677888888888877765 33443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=0.00054  Score=62.04  Aligned_cols=195  Identities=8%  Similarity=-0.040  Sum_probs=131.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhccc----C-C----HHH
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-DVELNNKLIEMYGKCCNTRLARKVFDQLRK----R-N----LSS  196 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~-~----~~t  196 (475)
                      |.-.-..|-..+++++|.+.|....+.    +-.+ -..+|+.+..+|.+.|++++|.+.+++..+    . +    ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            444456677889999999999887653    2122 236788899999999999999999986542    1 2    346


Q ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC----CH-
Q 038373          197 WHLMISGYAA-NGQGADGLMLFEQMRK----TGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP----GI-  265 (475)
Q Consensus       197 yn~li~~~~~-~g~~~~A~~l~~~M~~----~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p----~~-  265 (475)
                      +..+...|-. .|++++|++.+++..+    .+-.+. ..+|..+...+...|++++|...|+.......-.+    .. 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            7777777754 6999999999988754    222222 34678889999999999999999999874311111    11 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373          266 EHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT------VEVWEALRNFAQIHGDVELEDRAEELLGDL  326 (475)
Q Consensus       266 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~t~~~li~~~~~~g~~~~a~~~~~~l~~~  326 (475)
                      ..|..++..+...|+.+.|.+.|++. .+.|+      ......|+.++. .++.+...++...+.++
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~-~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence            12334445667889999999999998 33332      234455666654 45554445555555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=9.2e-05  Score=68.73  Aligned_cols=229  Identities=9%  Similarity=-0.004  Sum_probs=152.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HH---HHHHHHh-------ccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373           99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FS---SLLDSCG-------NLKSIEMGKRVHELLRTSAFVKDVELNN  167 (475)
Q Consensus        99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~---~ll~~~~-------~~~~~~~a~~~~~~m~~~g~~p~~~~~~  167 (475)
                      +.++...-+.+..++|++++++.....|+..+ |+   .++....       ..|.+++|..+++...+.. +.+...+.
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~  111 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH  111 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            33333333334458999999987765687654 32   2233333       3345788888898888765 45677777


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHhccc---CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373          168 KLIEMYGKCC--NTRLARKVFDQLRK---RNLSSWHLMI-SGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS  241 (475)
Q Consensus       168 ~Li~~~~k~g--~~~~A~~~f~~m~~---~~~~tyn~li-~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~  241 (475)
                      .+..++...+  +.++|...++++.+   ++...|..++ ..+...|..++|+..+++..+.... |...|+.+-..+.+
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~  190 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence            7777777765  48899999988753   3566665554 5677789999999999988775432 56677777777777


Q ss_pred             cCCHHHHH------------------------------HHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          242 AEAVKEGF------------------------------LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       242 ~g~~~~a~------------------------------~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      .|++++|.                              ..+.....  .-.++...+..+...+...|+.++|.+.|.+.
T Consensus       191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  268 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQEL  268 (334)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            66654331                              11222110  11112333445666777889999999988877


Q ss_pred             -CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          292 -PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       292 -~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                       ...| +..+|..+...+...|+.++|.+.++...+++|...
T Consensus       269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence             3334 345667777788899999999999999988887643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00068  Score=55.33  Aligned_cols=84  Identities=12%  Similarity=-0.028  Sum_probs=45.3

Q ss_pred             HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 038373          171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVK  246 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~  246 (475)
                      +.|.+.|++++|...|.+..+  | +...|..+-..|...|++++|++.|++..+..  | +...|..+..++...|+++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHH
Confidence            344555555555555554432  2 44455555555555566666655555555432  2 3345555555555555555


Q ss_pred             HHHHHHHHHh
Q 038373          247 EGFLYFEIMK  256 (475)
Q Consensus       247 ~a~~~~~~m~  256 (475)
                      +|...++...
T Consensus        96 eA~~~~~~a~  105 (159)
T d1a17a_          96 AALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00041  Score=53.55  Aligned_cols=85  Identities=12%  Similarity=-0.086  Sum_probs=45.2

Q ss_pred             HHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373          171 EMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE  247 (475)
Q Consensus       171 ~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~  247 (475)
                      +.+.+.|++++|..+|++..  .| +...|+.+-.+|.+.|++++|++.+.+..+.. ..+...|..+-.++...|++++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence            34445555555555555543  22 44455555555555555555555555555432 1244455555555555555555


Q ss_pred             HHHHHHHHh
Q 038373          248 GFLYFEIMK  256 (475)
Q Consensus       248 a~~~~~~m~  256 (475)
                      |...|+...
T Consensus        90 A~~~~~~a~   98 (117)
T d1elwa_          90 AKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555555

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.00041  Score=58.66  Aligned_cols=91  Identities=4%  Similarity=-0.157  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHH
Q 038373          129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYA  205 (475)
Q Consensus       129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~  205 (475)
                      ..+...-+.+.+.|++++|...|...++.. +.+...|+.+-.+|.+.|++++|...|+...+  | ++.+|..+-.+|.
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            333333444444555555555554444433 23444444444455555555555555544432  2 3334444555555


Q ss_pred             hcCChHHHHHHHHHH
Q 038373          206 ANGQGADGLMLFEQM  220 (475)
Q Consensus       206 ~~g~~~~A~~l~~~M  220 (475)
                      +.|++++|+..|++.
T Consensus        84 ~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          84 EMESYDEAIANLQRA   98 (201)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            555555555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0004  Score=54.21  Aligned_cols=98  Identities=6%  Similarity=0.022  Sum_probs=67.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhcccCC-----HHHHHHHHHH
Q 038373          132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT---RLARKVFDQLRKRN-----LSSWHLMISG  203 (475)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~---~~A~~~f~~m~~~~-----~~tyn~li~~  203 (475)
                      ..|++.+...+++++|.+.|+...+.+ +.+..++..+-.++.+.++.   ++|..+|++....+     ..+|..|-.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            356667777778888888888777766 55677777777777765544   45777777765421     2256677777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      |.+.|++++|++.|++..+  +.|+..-.
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A  108 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNNQA  108 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCHHH
Confidence            8888888888888888777  45654433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00072  Score=55.15  Aligned_cols=87  Identities=10%  Similarity=-0.049  Sum_probs=73.4

Q ss_pred             HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHH
Q 038373          136 DSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGAD  212 (475)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~  212 (475)
                      +.+.+.|++++|...|.+..+.. +-+...|..+-.+|.+.|++++|...|+...+  | +..+|..+..+|...|++++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence            35668889999999999888876 56788888888999999999999999987753  4 66789999999999999999


Q ss_pred             HHHHHHHHHHc
Q 038373          213 GLMLFEQMRKT  223 (475)
Q Consensus       213 A~~l~~~M~~~  223 (475)
                      |++.|++....
T Consensus        97 A~~~~~~a~~~  107 (159)
T d1a17a_          97 ALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00094  Score=51.40  Aligned_cols=85  Identities=8%  Similarity=-0.097  Sum_probs=43.2

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHH
Q 038373          137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A  213 (475)
                      .+.+.|++++|..+|.+.++.. +-+...|+.+-.+|.+.|++++|...|+...+   .+...|..+..+|...|++++|
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence            3444555555555555554443 33444555555555555555555555554431   2444555555555555555555


Q ss_pred             HHHHHHHHH
Q 038373          214 LMLFEQMRK  222 (475)
Q Consensus       214 ~~l~~~M~~  222 (475)
                      +..|++-.+
T Consensus        91 ~~~~~~a~~   99 (117)
T d1elwa_          91 KRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.00072  Score=57.01  Aligned_cols=97  Identities=10%  Similarity=-0.095  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      |+...+-..=..|.+.|++++|+..|.+.....| +...|..+-.+|.+.|++++|...|...++.. +-+..+|..+-.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            4555555566679999999999999998766555 55668889999999999999999999998753 336788999999


Q ss_pred             HHHHcCCHHHHHHHHHhcc
Q 038373          172 MYGKCCNTRLARKVFDQLR  190 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~  190 (475)
                      +|.+.|++++|...|++..
T Consensus        81 ~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            9999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.31  E-value=0.00049  Score=52.65  Aligned_cols=84  Identities=14%  Similarity=0.020  Sum_probs=48.4

Q ss_pred             HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373          104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA  182 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A  182 (475)
                      .+-+.|++++|...|++.....| +...|..+-.++.+.+++++|...++...+.. +.+..++..|...|.+.|+.++|
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHH
Confidence            45566666666666666554444 34445555556666666666666666655543 33455555555566666666666


Q ss_pred             HHHHHh
Q 038373          183 RKVFDQ  188 (475)
Q Consensus       183 ~~~f~~  188 (475)
                      .+.|++
T Consensus       104 ~~~l~~  109 (112)
T d1hxia_         104 LASLRA  109 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=7.8e-05  Score=69.21  Aligned_cols=200  Identities=10%  Similarity=0.039  Sum_probs=129.0

Q ss_pred             HHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCH
Q 038373          104 SLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLK--SIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGKCCNT  179 (475)
Q Consensus       104 ~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k~g~~  179 (475)
                      .+...|.+++|+.+|+......|+ ...|..+..++...+  ++++|...+..+.+.. .++...+..+ -..+-..|..
T Consensus        82 ~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          82 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence            456677788888888876554453 344555555555544  4778888888887764 3445554443 3566667888


Q ss_pred             HHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHH------------------------------HHHHHHHHHcCCC
Q 038373          180 RLARKVFDQLRKR---NLSSWHLMISGYAANGQGADG------------------------------LMLFEQMRKTGPH  226 (475)
Q Consensus       180 ~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A------------------------------~~l~~~M~~~g~~  226 (475)
                      ++|...++...+.   |...|+.+-..+.+.|++++|                              ...+....... .
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~  239 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR-A  239 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence            8888888876642   566777777777777765543                              22222222211 1


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 038373          227 PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEAL  303 (475)
Q Consensus       227 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~l  303 (475)
                      ++..++..+...+...|+.++|...+.....   ..| +...|..+...|.+.|+.++|.+.|++. .+.|+ ..-|+.|
T Consensus       240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         240 EPLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence            1222333445566667888899888887763   334 4567788889999999999999999988 55564 4456666


Q ss_pred             HHHHH
Q 038373          304 RNFAQ  308 (475)
Q Consensus       304 i~~~~  308 (475)
                      -..+.
T Consensus       317 ~~~~~  321 (334)
T d1dcea1         317 RSKFL  321 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.23  E-value=0.0011  Score=50.68  Aligned_cols=81  Identities=10%  Similarity=0.014  Sum_probs=44.0

Q ss_pred             HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHH
Q 038373          138 CGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGL  214 (475)
Q Consensus       138 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~  214 (475)
                      +-+.|++++|...++...+.. +-+..+|..|-.+|.+.|++++|...|+...+  | +..+|..+...|...|++++|+
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence            444556666666666555543 22455555555555555566655555554432  2 3445555555555555555555


Q ss_pred             HHHHH
Q 038373          215 MLFEQ  219 (475)
Q Consensus       215 ~l~~~  219 (475)
                      +.|++
T Consensus       105 ~~l~~  109 (112)
T d1hxia_         105 ASLRA  109 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00097  Score=51.86  Aligned_cols=89  Identities=9%  Similarity=0.101  Sum_probs=45.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 038373          168 KLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQG---ADGLMLFEQMRKTGPHPDK-ETFLVVFAACA  240 (475)
Q Consensus       168 ~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~---~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~  240 (475)
                      .|++.+...+++++|++.|+....  | +..++..+-.++.+.++.   ++|+++|++.......|+. .+|..+-.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            345555555566666666655442  2 444555555555543332   3455555555543332332 24445555555


Q ss_pred             ccCCHHHHHHHHHHHh
Q 038373          241 SAEAVKEGFLYFEIMK  256 (475)
Q Consensus       241 ~~g~~~~a~~~~~~m~  256 (475)
                      +.|++++|.+.|+...
T Consensus        84 ~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          84 RLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHH
Confidence            5666666666665555

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.0041  Score=51.74  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKET  231 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t  231 (475)
                      ..+..+...+.+.|+.++|...++...+  | +...|..++.+|.+.|+.++|++.|+++..     -|+.|...|
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            4455666667777777777777766642  3 555677777777777777777777766532     466665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0071  Score=46.97  Aligned_cols=89  Identities=9%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-------HHHHHHHHH
Q 038373          133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-------LSSWHLMIS  202 (475)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-------~~tyn~li~  202 (475)
                      .+-..+.+.|++++|.+.|.+.++.. +.+..++..+-.+|.+.|++++|...|++..+  | +       ..+|..+-.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34445666677777777777666654 34566666677777777777777777766542  1 1       125555666


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 038373          203 GYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       203 ~~~~~g~~~~A~~l~~~M~~  222 (475)
                      .+...+++++|++.|++-..
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66667777777777766544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.011  Score=48.92  Aligned_cols=119  Identities=12%  Similarity=0.074  Sum_probs=78.5

Q ss_pred             HHHhccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHH
Q 038373          136 DSCGNLKSIEMGKRVHELLRTS--AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG  213 (475)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A  213 (475)
                      ......|++++|.+.|....+.  |-..            .....-+-+...-..+....+..|..+...+.+.|++++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l------------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVL------------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTT------------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCccccc------------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            3566778888888888887663  2110            0000000111111222233456788888889999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh----hCCCcCCHHH
Q 038373          214 LMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN----DYGIVPGIEH  267 (475)
Q Consensus       214 ~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~  267 (475)
                      +..++++.+.. .-|...|..++.++...|+.++|.+.|+.+.+    +.|+.|...+
T Consensus        87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999888743 23777889999999999999999888887642    4688887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0057  Score=50.25  Aligned_cols=58  Identities=5%  Similarity=-0.098  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +|+.+-.+|.+.|++++|...++....   +.| +...|..+-.+|...|++++|.+.|++.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhh---ccccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            455555566666666666666666552   234 4555666666666666666666666665

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.82  E-value=0.11  Score=47.13  Aligned_cols=216  Identities=10%  Similarity=-0.019  Sum_probs=118.2

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373           92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE  171 (475)
Q Consensus        92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~  171 (475)
                      .||..--..+.+-|-+.|.++.|..+|..+..       |.-++..+.+.++++.|.++....      -+..+|.-+..
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~   77 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF   77 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence            34444444455566688888888888887765       667777778888888877766533      25667777788


Q ss_pred             HHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373          172 MYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY  251 (475)
Q Consensus       172 ~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~  251 (475)
                      ++.+.....-|.-+- .....+...-..++..|-..|.+++...++...... -..+...|+-++..|++.+. ++-.+.
T Consensus        78 ~l~~~~e~~la~i~~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~  154 (336)
T d1b89a_          78 ACVDGKEFRLAQMCG-LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH  154 (336)
T ss_dssp             HHHHTTCHHHHHHTT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             HHHhCcHHHHHHHHH-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence            887777666543321 111123334457788888888888888888766432 24566677888888887653 333333


Q ss_pred             HHHHhhhCCCcCC--------HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373          252 FEIMKNDYGIVPG--------IEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL  323 (475)
Q Consensus       252 ~~~m~~~~g~~p~--------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l  323 (475)
                      +.....  ...+.        ...|.-++-.|.+.|++++|..+.-.-.  +++.-....+..+.+.++.+..-++...+
T Consensus       155 l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~--~~~~~~~~f~e~~~k~~N~e~~~~~i~~y  230 (336)
T d1b89a_         155 LELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFY  230 (336)
T ss_dssp             HHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred             HHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc--hhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence            332221  11111        1123455555666666665555443321  22222344566677888887666666655


Q ss_pred             hccC
Q 038373          324 GDLD  327 (475)
Q Consensus       324 ~~~~  327 (475)
                      .+..
T Consensus       231 L~~~  234 (336)
T d1b89a_         231 LEFK  234 (336)
T ss_dssp             HHHC
T ss_pred             HHcC
Confidence            4433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.77  E-value=0.011  Score=47.55  Aligned_cols=58  Identities=12%  Similarity=-0.023  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      +|+.+..++.+.|++++|.+.+....+   +.| +...|..+..+|...|++++|...|++.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~---~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccc---ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            455555556666666666666666552   223 4555666666666666666666666555

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0048  Score=48.04  Aligned_cols=91  Identities=9%  Similarity=-0.024  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC--------HHHH
Q 038373          197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG--------IEHY  268 (475)
Q Consensus       197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~--------~~~y  268 (475)
                      |-.+-..|.+.|++++|++.|.+.++... -+...|..+-.+|.+.|++++|.+.++.+.+   +.|+        ..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHHHHHH
Confidence            44555678888888888888888877532 3577788888888888888888888887663   1221        2356


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC
Q 038373          269 IAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ..+-..+...+++++|.+.|++-
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            67777788888999999988764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.017  Score=47.12  Aligned_cols=58  Identities=10%  Similarity=-0.155  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      +|+.+-.+|.+.|++++|...++...  .| ++.+|.-+..+|...|++++|+..|++..+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45555566666666666666665543  23 555666666666666666666666666655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.66  E-value=0.026  Score=45.12  Aligned_cols=58  Identities=12%  Similarity=-0.027  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          165 LNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       165 ~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      +|+.+..+|.+.|++++|.+.++...  .| ++.+|..+..+|...|++++|+..|++-.+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            44445555555555555555555433  12 444555555555555555555555555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.50  E-value=0.021  Score=46.42  Aligned_cols=61  Identities=2%  Similarity=-0.126  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      ..|+.+-.+|.+.|++++|+..+++..+.. .-+..+|..+-.++...|++++|.+.|+...
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            355555566666666666666666655432 1134455666666666666666666666555

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.25  E-value=0.0028  Score=56.42  Aligned_cols=114  Identities=11%  Similarity=-0.033  Sum_probs=59.7

Q ss_pred             HcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 038373          175 KCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFL  250 (475)
Q Consensus       175 k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~  250 (475)
                      +.|++++|...|++-.  +| |...+..+...|+..|++++|.+.|+...+.  .|+ ...+..+...+...+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHHH
Confidence            4566666666666554  23 5566666667777777777777666666553  343 2333333333333333333222


Q ss_pred             HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       251 ~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      -...-. ..+-.++...+......+.+.|+.++|.+++++.
T Consensus        86 ~~~~~~-~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          86 GAATAK-VLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             SCCCEE-CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hhhhhh-cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            211111 1111122333444556677778888888877766

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.01  E-value=0.069  Score=43.14  Aligned_cols=60  Identities=7%  Similarity=-0.057  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      .|+.+-.+|.+.|++++|+..+++..... ..+...|..+..++...|++++|...|....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45555555666666666666666655532 2244555566666666666666666666655

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.95  E-value=0.065  Score=43.28  Aligned_cols=118  Identities=10%  Similarity=-0.022  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC  177 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g  177 (475)
                      +...-..+.+.|++++|++.|.+....          +..............+-        ..+...|+.+-.+|.+.|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY----------VEGSRAAAEDADGAKLQ--------PVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHHHHSCHHHHGGGH--------HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------hhhhhhhhhhHHHHHhC--------hhhHHHHHHHHHHHHhhc
Confidence            444455677888888888888765431          00000001111111000        123556777888999999


Q ss_pred             CHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 038373          178 NTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVV  235 (475)
Q Consensus       178 ~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~l  235 (475)
                      ++++|...|+...+  | +..+|..+-.+|...|++++|++.|++..+.  .|+ ...+..+
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l  151 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAEL  151 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            99999999998753  3 6779999999999999999999999998884  454 3344443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.88  E-value=0.01  Score=52.48  Aligned_cols=124  Identities=11%  Similarity=-0.002  Sum_probs=85.0

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHH
Q 038373          204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLI  282 (475)
Q Consensus       204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~  282 (475)
                      ..+.|++++|+..+++-++.. .-|...+..+...++..|++++|...++...+   ..|+ ...+..+-..+...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence            346799999999999998853 23678999999999999999999999999883   4565 344444444444444444


Q ss_pred             HHHHHHHhC--CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373          283 EAEEFVERM--PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA  331 (475)
Q Consensus       283 ~A~~~~~~m--~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~  331 (475)
                      ++..-...-  ...| +...+......+...|+.+.|.+.++.+.+..|...
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            333222211  1123 233334445567788999999999988888877653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.64  E-value=0.048  Score=43.54  Aligned_cols=96  Identities=10%  Similarity=0.011  Sum_probs=58.3

Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhh----
Q 038373          196 SWHLM--ISGYAANGQGADGLMLFEQMRKTG-PHPD----------KETFLVVFAACASAEAVKEGFLYFEIMKND----  258 (475)
Q Consensus       196 tyn~l--i~~~~~~g~~~~A~~l~~~M~~~g-~~pd----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----  258 (475)
                      +|+.+  ...+.+.|++++|++.|++-.+-. -.|+          ..+|+.+-.++.+.|++++|.+.+++...-    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            45555  334556677777777777765411 1121          356777777778888888877777665421    


Q ss_pred             CCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373          259 YGIVPG-----IEHYIAIIKVLGSAGHLIEAEEFVERM  291 (475)
Q Consensus       259 ~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m  291 (475)
                      ....++     ...|+.+-.+|.+.|++++|.+.|++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            011111     123555667788888888888777664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.58  E-value=0.061  Score=42.86  Aligned_cols=59  Identities=15%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc---------C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK---------R-----NLSSWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~---------~-----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      ..|+.+-.+|.+.|++++|..-+++..+         +     ....|+.+-.+|...|++++|++.|++..+
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555556665555555554321         1     112466667777778888888777777543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.39  E-value=0.036  Score=43.83  Aligned_cols=39  Identities=13%  Similarity=0.094  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK  256 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~  256 (475)
                      +++|.+.|++..+  +.|+..+|..-+.-+      ..|.+++.+..
T Consensus       102 ~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~  140 (145)
T d1zu2a1         102 FDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHH
T ss_pred             HHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHH
Confidence            4666777766665  456666655544443      34555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.37  E-value=0.084  Score=42.61  Aligned_cols=67  Identities=13%  Similarity=-0.050  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373          164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF  232 (475)
Q Consensus       164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~  232 (475)
                      .+|+.+-.+|.+.|++++|...++...+  | ++.+|..+..+|...|++++|.+.|++...  +.|+....
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~  134 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAA  134 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence            4566777889999999999999987653  3 777999999999999999999999999887  45654433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.71  E-value=0.049  Score=42.98  Aligned_cols=114  Identities=12%  Similarity=-0.042  Sum_probs=79.3

Q ss_pred             HHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhc----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373          105 LCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGN----------LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY  173 (475)
Q Consensus       105 ~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~----------~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~  173 (475)
                      |-+.+.+++|++.|+......|+. .++..+-.++..          .+.+++|...|+...+.. +.+..+|+.+-.+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            456677999999999876655644 455555555543          355688999999998875 56788898888888


Q ss_pred             HHcCC-----------HHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373          174 GKCCN-----------TRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP  225 (475)
Q Consensus       174 ~k~g~-----------~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~  225 (475)
                      ...|+           +++|.+.|+...  +|+-..|..-+.-+      .+|.+++.+..+.|+
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            76553           577888887665  56655554443332      567788888777664

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.83  E-value=2.1  Score=38.23  Aligned_cols=210  Identities=12%  Similarity=0.083  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcc------------------------c--CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 038373           98 LDVNLLSLCKEGKVREAIEYMGQDA------------------------S--ASAGYDVFSSLLDSCGNLKSIEMGKRVH  151 (475)
Q Consensus        98 ~n~li~~~~~~g~~~~A~~l~~~~~------------------------~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~  151 (475)
                      |..++..+.+.+++..|.+++....                        .  ...+......++..|-..|.+++...++
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~L  122 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML  122 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3456677777777777776654211                        0  0134444556667777777777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CH----------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373          152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-NL----------SSWHLMISGYAANGQGADGLMLFEQM  220 (475)
Q Consensus       152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~~----------~tyn~li~~~~~~g~~~~A~~l~~~M  220 (475)
                      +...... ..+...++-|+..|++.+. ++-.+.+.....+ |.          .-|.-++--|.+.|++++|..+.-+ 
T Consensus       123 e~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-  199 (336)
T d1b89a_         123 EAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-  199 (336)
T ss_dssp             HHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             HHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-
Confidence            7654322 4566677777777777643 2333333332211 11          1355555556666666655544321 


Q ss_pred             HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC--------
Q 038373          221 RKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP--------  292 (475)
Q Consensus       221 ~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~--------  292 (475)
                          -.+|..-....+..+.+..+.+...++.....+.   .|+.  -+.|+......-+..+..+.|++-+        
T Consensus       200 ----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~  270 (336)
T d1b89a_         200 ----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY  270 (336)
T ss_dssp             ----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred             ----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHH
Confidence                1222222333345555666666555555444421   2332  2444444444445555555554431        


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373          293 -----FEPTVEVWEALRNFAQIHGDVELEDRA  319 (475)
Q Consensus       293 -----~~p~~~t~~~li~~~~~~g~~~~a~~~  319 (475)
                           -.-+....++|...|...++.+.-++.
T Consensus       271 Le~v~~~n~~~vn~al~~lyie~~d~~~l~~~  302 (336)
T d1b89a_         271 LRSVQNHNNKSVNESLNNLFITEEDYQALRTS  302 (336)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHHHhCcchhHHHHHH
Confidence                 123556788888888888876433333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.42  Score=45.77  Aligned_cols=114  Identities=11%  Similarity=-0.062  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 038373          162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNL-SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAAC  239 (475)
Q Consensus       162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~  239 (475)
                      +...++.+-..+.+.|+.++|...++...+++. .++..|-..+...|++++|...|++-.+.  .|+ ..+|+.|-..+
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA  196 (497)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            445566666777777787777766655443322 35666777778888888888888877763  454 46788888888


Q ss_pred             HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcC
Q 038373          240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG  279 (475)
Q Consensus       240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g  279 (475)
                      ...|+..+|...|.+...  --.|-...+..|...|.+..
T Consensus       197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence            888888888887777662  22345566677766665544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.29  Score=34.95  Aligned_cols=27  Identities=11%  Similarity=0.155  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRK  222 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~  222 (475)
                      +|+.|-.+|.+.|++++|+..+++..+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            444444455555555555555554444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.4  Score=45.88  Aligned_cols=129  Identities=7%  Similarity=-0.112  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038373          177 CNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFE  253 (475)
Q Consensus       177 g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~  253 (475)
                      +.++.|...|...-+   ++...|+.+-..+.+.|+.++|...+++-....  | ..++..+-..+...|++++|...|.
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~  176 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYR  176 (497)
T ss_dssp             HHHHHHHHHHTC-------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence            445555554443221   355678888888899999999988776654321  1 2467778888999999999999999


Q ss_pred             HHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 038373          254 IMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHG  311 (475)
Q Consensus       254 ~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g  311 (475)
                      +..   .+.|+ ...|+.|-..|...|+..+|...|.+-  -..|-..++..|...+.+..
T Consensus       177 ~A~---~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         177 HAA---QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHH---HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHH---HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            988   34564 578999999999999999999999877  22567778888877776644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.4  Score=34.17  Aligned_cols=56  Identities=11%  Similarity=-0.022  Sum_probs=26.2

Q ss_pred             HHHHHHcCChHHHHHHHHhcccC-------CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038373          102 LLSLCKEGKVREAIEYMGQDASA-------SAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTS  157 (475)
Q Consensus       102 i~~~~~~g~~~~A~~l~~~~~~~-------~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  157 (475)
                      =..+.+.|++++|...|++....       .++ ..+++.|-.++.+.|++++|...++++++.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            33455555555555555442210       011 223444555555555555555555555443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.87  E-value=2.4  Score=31.81  Aligned_cols=65  Identities=6%  Similarity=-0.027  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373          196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV  262 (475)
Q Consensus       196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~  262 (475)
                      -.+.-++...+.|+-+.-.++.+++.+. -+|+......+-.||.+.|+..++-+++.+.-++ |++
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K  152 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  152 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence            3455566677778777777777776653 4677777777888888888888888888777744 654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.45  E-value=6.1  Score=33.01  Aligned_cols=219  Identities=9%  Similarity=-0.081  Sum_probs=132.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373           94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVELNNKL  169 (475)
Q Consensus        94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~L  169 (475)
                      |+..+.-|=..+-+.|++++|++.|++....+ |...+..|-..+-.    ..+...+...+....+.+   +......|
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            34456666566778899999999999876655 34444334444443    568899999999888876   34444555


Q ss_pred             HHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373          170 IEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA  240 (475)
Q Consensus       170 i~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~  240 (475)
                      ...+..    ..+.+.|...|+.-.+. .......+...+..    ......|...+.+....   .+...+..|...+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhc
Confidence            555543    46788898888866543 33333333333333    34456777777766553   35566666666665


Q ss_pred             c----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---
Q 038373          241 S----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFAQI---  309 (475)
Q Consensus       241 ~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~---  309 (475)
                      .    ..+...+...++...+. |   +......|=..|..    ..+.++|..+|.+....-+...+..|-..|..   
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             cCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCC
Confidence            4    45667777777776632 4   33333333333443    56788999999887222355666555555543   


Q ss_pred             -cCCchHHHHHHHHH
Q 038373          310 -HGDVELEDRAEELL  323 (475)
Q Consensus       310 -~g~~~~a~~~~~~l  323 (475)
                       ..+.+.|.+.++.-
T Consensus       230 ~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         230 VTRNEKQAIENFKKG  244 (265)
T ss_dssp             SSCCSTTHHHHHHHH
T ss_pred             CccCHHHHHHHHHHH
Confidence             22555555544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=85.26  E-value=9.1  Score=31.80  Aligned_cols=191  Identities=9%  Similarity=-0.053  Sum_probs=114.4

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHH
Q 038373          127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMI  201 (475)
Q Consensus       127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li  201 (475)
                      |+..+..|-..+-+.+++++|.+.|+...+.|   |...+-.|-.+|-.    ..+...|...+..-.++ +...+..|.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            34455556556667899999999999999887   55566667777766    56899999998877655 445555555


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373          202 SGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVVFAA--CASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL  275 (475)
Q Consensus       202 ~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~--~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~  275 (475)
                      ..+..    .++.+.|...+++-...|........ .....  .........+...+......    .+...+..|-..|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~  152 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhh
Confidence            55443    46678899999988777643222111 11111  12345566777777665522    2455566666666


Q ss_pred             Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhc
Q 038373          276 GS----AGHLIEAEEFVERMPFEPTVEVWEALRNFAQI----HGDVELEDRAEELLGD  325 (475)
Q Consensus       276 ~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~l~~  325 (475)
                      ..    ..+...+..+++...-..+...+..|-..|..    ..+.+.|...++...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~  210 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE  210 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             ccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence            65    34455666666655212355554444333333    3445444444444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.60  E-value=6.2  Score=29.29  Aligned_cols=17  Identities=0%  Similarity=-0.388  Sum_probs=9.0

Q ss_pred             CCHHHHHHHHHHHHHcC
Q 038373          142 KSIEMGKRVHELLRTSA  158 (475)
Q Consensus       142 ~~~~~a~~~~~~m~~~g  158 (475)
                      .+.++|.+.+....+.|
T Consensus        37 ~~~~~a~~~~~~aa~~g   53 (133)
T d1klxa_          37 INKQKLFQYLSKACELN   53 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHhhhhccc
Confidence            44555555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.37  E-value=5.8  Score=29.65  Aligned_cols=58  Identities=7%  Similarity=-0.025  Sum_probs=27.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 038373          131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL  189 (475)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m  189 (475)
                      ++..|+...+.|.-++-.+++..+.+.+ +++....-.+-++|.|-|...+|..++.+.
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            3444444555555555555555544443 444555555555555555555555544443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.33  E-value=3.5  Score=29.24  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373          210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK  273 (475)
Q Consensus       210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~  273 (475)
                      .-++.+-++.+-...+.|......+.+.||.+..++..|.++++.++.+.|-  +...|..+++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq   83 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence            4456666677777788999999999999999999999999999999866443  4557777764