Citrus Sinensis ID: 038375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNVV
Secondary Structure (PSIPRED)
cccccHHHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHccccccccEEEcccHHHcccccccccccccEEEcccccccccHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHccccccccEcccccHHHHccccccEEccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
ggvpgatnlkeSEVLESIVKKQasdgrlnavicaspaealgsrgllkglkatcypsfmeqlapacattvesrvpqdgkvvtsrgpctTMEFAVALVEQLYgkeradevsgplVVTFIDNVV
Flexible Loop (DISEMBL)
ggvpgatnlkesevLESIVKkqasdgrlnAVICASPaealgsrglLKGLKATCYPSFMEQLAPACATTvesrvpqdgkvvtsrgpctTMEFAVALVEQLYGkeradevsgplvvtfidnvv
Low Complexity Region (SEG)
GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNVV
Disordered region (IsUnstruct)
**************************RLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID***
Disordered Region (DISOPRED)
GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNVV
Disordered Region (DISEMBL)
GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNVV
Disordered Region (DISPRO)
*****ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDNVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9MAH3	438	Protein DJ-1 homolog B OS	yes	no	0.933	0.257	0.692	1e-37
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.925	0.285	0.640	2e-36
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.933	0.597	0.460	4e-17
Q8VY09	472	Protein DJ-1 homolog C OS	no	no	0.876	0.224	0.407	8e-17
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.917	0.587	0.435	8e-16
Q99LX0	189	Protein DJ-1 OS=Mus muscu	yes	no	0.933	0.597	0.434	1e-15
O88767	189	Protein DJ-1 OS=Rattus no	yes	no	0.933	0.597	0.426	3e-15
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.933	0.597	0.408	8e-15
Q5E946	189	Protein DJ-1 OS=Bos tauru	yes	no	0.933	0.597	0.426	8e-15
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.933	0.597	0.434	9e-15

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE +VKKQ +DGRLNA IC +PA A G+ GLL+G KATCYP FME+
Sbjct: 122 GGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEK 181

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA ACAT VESRV  DGK+VTSRGP TTMEF+V LVEQL GKE+A EVSGPLV+
Sbjct: 182 LA-ACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVM 234

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 91/114 (79%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE++VKKQ SDGRLNA IC +PA ALG+ GLL+G KAT YP FME+
Sbjct: 75  GGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEK 134

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA  CAT VESRV  DG++VTSRGP TT+EF++ L+EQL+GKE+ADEVS  L++
Sbjct: 135 LAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLL 188

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES V++ I+K+Q S   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPGAKDK 132

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GKE AD+V  PLV+
Sbjct: 133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 2/108 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA  L++ E+LE I+K+QA D RL   I  +PA  L   GLL   + T +P+F  +
Sbjct: 153 GGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHPAFFGK 212

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
           L    A  V++ +   G++ TSRGP T+ +FA++L EQL+G+  A  +
Sbjct: 213 LPTFWA--VKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSI 258

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 6/117 (5%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K Q S   L A ICA P  AL + G+  G K   +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPT-ALLAHGIGFGSKVITHPLAKDK 132

Query: 61  L---APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +   A  C +  ESRV +DG ++TSRGP T+ EF +A+VE L GKE A++V  PL++
Sbjct: 133 MMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLIL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99LX0|PARK7_MOUSE Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES +++ I+K+Q S   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPT-ALLAHEVGFGCKVTTHPLAKDK 132

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GK+ A++V  PLV+
Sbjct: 133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O88767|PARK7_RAT Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES +++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPT-ALLAHEVGFGCKVTSHPLAKDK 132

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GK+ A++V  PLV+
Sbjct: 133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ GA NL ES  ++ ++K Q     L A ICA P  AL + G+  G   T +P   ++
Sbjct: 74  GGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPT-ALLAHGIAYGSTVTTHPGAKDK 132

Query: 61  L-APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           + A       E+RV +DG V+TSRGP T+ EFA+ +VE+L G E A +V  PL++
Sbjct: 133 MMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLIL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5E946|PARK7_BOVIN Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q     L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      +  E+RV +DG ++TSRGP T+ EFA+ +VE L GKE AD+V  PLV+
Sbjct: 133 MMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
255566579	364	conserved hypothetical protein [Ricinus	0.925	0.307	0.754	5e-42
449438931	434	PREDICTED: uncharacterized protein LOC10	0.933	0.260	0.763	2e-41
302142910	393	unnamed protein product [Vitis vinifera]	0.933	0.287	0.745	1e-40
225461638	478	PREDICTED: uncharacterized protein LOC10	0.933	0.236	0.745	1e-40
147775474	427	hypothetical protein VITISV_008479 [Viti	0.975	0.276	0.714	6e-40
224114830	442	predicted protein [Populus trichocarpa]	0.925	0.253	0.684	1e-38
312282985	391	unnamed protein product [Thellungiella h	0.933	0.289	0.684	8e-37
297853104	437	DJ-1 family protein [Arabidopsis lyrata	0.933	0.258	0.701	2e-36
18404397	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.933	0.257	0.692	4e-36
21536528	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.933	0.257	0.692	5e-36

>gi|255566579|ref|XP_002524274.1| conserved hypothetical protein [Ricinus communis] gi|223536465|gb|EEF38113.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 98/114 (85%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGATNLK    LES+VKKQA+DGRL A +CASPA A GS G+LKGLKATCYPSFMEQ
Sbjct: 111 GGMPGATNLKTCGTLESMVKKQAADGRLYAAVCASPAVAFGSWGVLKGLKATCYPSFMEQ 170

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           L  + AT V+SRV QDG VVTSRGP TTMEFAVALVEQLYGK++A+EVSGPL++
Sbjct: 171 LQSSDATAVDSRVQQDGIVVTSRGPGTTMEFAVALVEQLYGKDKANEVSGPLIM 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438931|ref|XP_004137241.1| PREDICTED: uncharacterized protein LOC101212934 [Cucumis sativus] gi|449483151|ref|XP_004156507.1| PREDICTED: uncharacterized protein LOC101228984 [Cucumis sativus]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 100/114 (87%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGAT+L++  VLE+IVKKQA+DGRL A ICASPA  LGS GLLKGLKATCYPSFMEQ
Sbjct: 115 GGMPGATSLRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQ 174

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           L  + AT VESRV  DG+VVTSRGP TT+EFAVALV+QLYGKE+ADEVSGPL++
Sbjct: 175 LE-STATAVESRVQIDGQVVTSRGPGTTLEFAVALVDQLYGKEKADEVSGPLLL 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142910|emb|CBI20205.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 101/114 (88%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA  L++  +LES+VKK A+DG+L A ICA+PA ALGS GL+KGLKATCYPSFMEQ
Sbjct: 75  GGMPGAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQ 134

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           L+ + ATTVESRV QDGKVVTSRGP TTMEF+V+LVEQLYGKE+A+EVSGPLV+
Sbjct: 135 LS-STATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVM 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461638|ref|XP_002283063.1| PREDICTED: uncharacterized protein LOC100253735 [Vitis vinifera]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 101/114 (88%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA  L++  +LES+VKK A+DG+L A ICA+PA ALGS GL+KGLKATCYPSFMEQ
Sbjct: 160 GGMPGAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQ 219

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           L+ + ATTVESRV QDGKVVTSRGP TTMEF+V+LVEQLYGKE+A+EVSGPLV+
Sbjct: 220 LS-STATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVM 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775474|emb|CAN62882.1| hypothetical protein VITISV_008479 [Vitis vinifera]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 101/119 (84%), Gaps = 1/119 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA  L++   LES+VKK A+DG+L A ICA+PA ALGS GL+KGLKATCYPSFMEQ
Sbjct: 111 GGMPGAATLRDCGXLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQ 170

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
           L+ + ATTVESRV QDGKVVTSRGP TTMEF+V+LVEQLY KE+A+EVSGPL++  I N
Sbjct: 171 LS-STATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYAKEKANEVSGPLILVPIAN 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114830|ref|XP_002316868.1| predicted protein [Populus trichocarpa] gi|222859933|gb|EEE97480.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 94/114 (82%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGATN K  ++LE +VKKQ  DG+L A +CASPA A GS GLL GLKATC+P FM++
Sbjct: 122 GGIPGATNFKNCQLLEKLVKKQVEDGKLYAAVCASPAVAFGSWGLLNGLKATCHPFFMDE 181

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           L  + A TVESRV ++G VVTSRGP TTMEFAVALVE+L+GKE+ADEVSGPLV+
Sbjct: 182 LKSSGAITVESRVHEEGNVVTSRGPGTTMEFAVALVEKLFGKEKADEVSGPLVM 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282985|dbj|BAJ34358.1| unnamed protein product [Thellungiella halophila]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 93/114 (81%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE++VKKQ +DGRLNA IC +PA ALG+ GLL+G KATCYP FME+
Sbjct: 75  GGLPGGETLKNCKALENMVKKQETDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEK 134

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA  CAT VESRV  DG++VTSRGP TTMEF+V LVEQL+GKE+A EVSGPLV+
Sbjct: 135 LA-TCATAVESRVEIDGRIVTSRGPGTTMEFSVTLVEQLFGKEKAAEVSGPLVM 187

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853104|ref|XP_002894433.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340275|gb|EFH70692.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 92/114 (80%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE +VKKQ +DGRLNA IC +PA ALG+ GLL+G KATCYP FME+
Sbjct: 121 GGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEK 180

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA ACAT VESRV  DGK+VTSRGP TTMEF+V LVEQL GKE+A EVSGPLV+
Sbjct: 181 LA-ACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAAEVSGPLVM 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404397|ref|NP_564626.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gi|7769869|gb|AAF69547.1|AC008007_22 F12M16.18 [Arabidopsis thaliana] gi|15810459|gb|AAL07117.1| unknown protein [Arabidopsis thaliana] gi|20259561|gb|AAM14123.1| unknown protein [Arabidopsis thaliana] gi|332194795|gb|AEE32916.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE +VKKQ +DGRLNA IC +PA A G+ GLL+G KATCYP FME+
Sbjct: 122 GGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEK 181

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA ACAT VESRV  DGK+VTSRGP TTMEF+V LVEQL GKE+A EVSGPLV+
Sbjct: 182 LA-ACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVM 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PG   LK  + LE +VKKQ +DGRLNA IC +PA A G+ GLL+G KATCYP FME+
Sbjct: 122 GGLPGGETLKNCKPLERMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEK 181

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           LA ACAT VESRV  DGK+VTSRGP TTMEF+V LVEQL GKE+A EVSGPLV+
Sbjct: 182 LA-ACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVM 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.933	0.257	0.692	1.2e-35
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.942	0.290	0.640	4.6e-34
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.933	0.597	0.460	5.8e-18
UNIPROTKB|D5M8S2	189	DJ-1 "Protein DJ-1" [Gallus ga	0.917	0.587	0.444	3.2e-17
MGI|MGI:2135637	189	Park7 "Parkinson disease (auto	0.933	0.597	0.434	1.1e-16
UNIPROTKB|Q8UW59	189	PARK7 "Protein DJ-1" [Gallus g	0.917	0.587	0.435	1.4e-16
FB|FBgn0039802	205	dj-1beta "dj-1beta" [Drosophil	0.950	0.560	0.379	1.8e-16
RGD|621808	189	Park7 "parkinson protein 7" [R	0.933	0.597	0.426	2.9e-16
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.933	0.597	0.408	4.7e-16
UNIPROTKB|Q5E946	189	PARK7 "Protein DJ-1" [Bos taur	0.933	0.597	0.426	7.7e-16

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 79/114 (69%), Positives = 91/114 (79%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG+PG   LK  + LE +VKKQ +DGRLNA IC +PA A G+ GLL+G KATCYP FME+
Sbjct:   122 GGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEK 181

Query:    61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             LA ACAT VESRV  DGK+VTSRGP TTMEF+V LVEQL GKE+A EVSGPLV+
Sbjct:   182 LA-ACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVM 234

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 73/114 (64%), Positives = 91/114 (79%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG+PG   LK  + LE++VKKQ SDGRLNA IC +PA ALG+ GLL+G KAT YP FME+
Sbjct:    75 GGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEK 134

Query:    61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             LA  CAT VESRV  DG++VTSRGP TT+EF++ L+EQL+GKE+ADEVS  L++
Sbjct:   135 LAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLL 188

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES V++ I+K+Q S   L A ICA P  AL +  +  G K T +P   ++
Sbjct:    74 GGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPGAKDK 132

Query:    61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GKE AD+V  PLV+
Sbjct:   133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVL 187

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

UNIPROTKB|D5M8S2 DJ-1 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 52/117 (44%), Positives = 72/117 (61%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES  ++ I+K Q S   L A ICA P  AL + G+  G K T +P   ++
Sbjct:    74 GGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPT-ALLAHGIGFGSKVTTHPLAKDK 132

Query:    61 L---APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +   A  C +  ESRV +DG ++TSRGP T+ EF +A+VE L GKE A++V  PL++
Sbjct:   133 MMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLIL 187

GO:0003729 "mRNA binding" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

MGI|MGI:2135637 Park7 "Parkinson disease (autosomal recessive, early onset) 7" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 50/115 (43%), Positives = 72/115 (62%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES +++ I+K+Q S   L A ICA P  AL +  +  G K T +P   ++
Sbjct:    74 GGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPT-ALLAHEVGFGCKVTTHPLAKDK 132

Query:    61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GK+ A++V  PLV+
Sbjct:   133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVL 187

GO:0001963 "synaptic transmission, dopaminergic" evidence=IMP

GO:0003723 "RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=ISO

GO:0004601 "peroxidase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=IMP

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007338 "single fertilization" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0008283 "cell proliferation" evidence=TAS

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0032091 "negative regulation of protein binding" evidence=ISO

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP;IDA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=IMP

GO:0050821 "protein stabilization" evidence=ISO;IMP

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0051920 "peroxiredoxin activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

GO:0060081 "membrane hyperpolarization" evidence=IMP

GO:0060548 "negative regulation of cell death" evidence=ISO;IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;IMP

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IMP

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

UNIPROTKB|Q8UW59 PARK7 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 51/117 (43%), Positives = 71/117 (60%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES  ++ I+K Q S   L A ICA P  AL + G+  G K   +P   ++
Sbjct:    74 GGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPT-ALLAHGIGFGSKVITHPLAKDK 132

Query:    61 L---APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +   A  C +  ESRV +DG ++TSRGP T+ EF +A+VE L GKE A++V  PL++
Sbjct:   133 MMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLIL 187

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001963 "synaptic transmission, dopaminergic" evidence=ISS

GO:0042542 "response to hydrogen peroxide" evidence=ISS

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=ISS

GO:0008344 "adult locomotory behavior" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

FB|FBgn0039802 dj-1beta "dj-1beta" [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/116 (37%), Positives = 66/116 (56%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG+ G+  + ES ++  +++ Q S G L A ICA+P   L   G+  G   T YPS   Q
Sbjct:    90 GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 148

Query:    61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTF 116
             L    +   +  V +DG ++TSRGP T  EFA+ + E+L GKE+  EV+  L+V +
Sbjct:   149 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY 204

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

RGD|621808 Park7 "parkinson protein 7" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 49/115 (42%), Positives = 72/115 (62%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES +++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct:    74 GGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPT-ALLAHEVGFGCKVTSHPLAKDK 132

Query:    61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +      +  ESRV +DG ++TSRGP T+ EFA+A+VE L GK+ A++V  PLV+
Sbjct:   133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVL 187

GO:0001963 "synaptic transmission, dopaminergic" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003729 "mRNA binding" evidence=ISO;ISS

GO:0004601 "peroxidase activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=ISO

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=ISO;ISS

GO:0007338 "single fertilization" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO;ISS

GO:0008344 "adult locomotory behavior" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0032091 "negative regulation of protein binding" evidence=ISO;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISO;ISS

GO:0042493 "response to drug" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=ISO

GO:0042743 "hydrogen peroxide metabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO;ISS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=ISO;ISS

GO:0050821 "protein stabilization" evidence=ISO;ISS

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=ISO

GO:0051899 "membrane depolarization" evidence=ISO

GO:0051920 "peroxiredoxin activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0060081 "membrane hyperpolarization" evidence=ISO

GO:0060548 "negative regulation of cell death" evidence=ISO;ISS

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISO;ISS

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 47/115 (40%), Positives = 68/115 (59%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG+ GA NL ES  ++ ++K Q     L A ICA P  AL + G+  G   T +P   ++
Sbjct:    74 GGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPT-ALLAHGIAYGSTVTTHPGAKDK 132

Query:    61 L-APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             + A       E+RV +DG V+TSRGP T+ EFA+ +VE+L G E A +V  PL++
Sbjct:   133 MMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLIL 187

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

UNIPROTKB|Q5E946 PARK7 "Protein DJ-1" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 49/115 (42%), Positives = 69/115 (60%)

Query:     1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
             GG  GA NL ES  ++ I+K+Q     L A ICA P  AL +  +  G K T +P   ++
Sbjct:    74 GGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132

Query:    61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             +      +  E+RV +DG ++TSRGP T+ EFA+ +VE L GKE AD+V  PLV+
Sbjct:   133 MMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQVKAPLVL 187

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	8e-41
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	5e-33
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	4e-19
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	4e-16
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	5e-14
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-11
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	2e-09
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	4e-07
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	4e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	1e-05
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	3e-05
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	8e-05
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	3e-04

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  133 bits (336), Expect = 8e-41
 Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 2/111 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA NL+ S++L +I+K Q S G+L A ICA+PA  L + G+L G KATCYP F E+
Sbjct: 71  GGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPA-VLLAHGVLLGKKATCYPGFKEK 129

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGP 111
           L      +V   V  DG ++TSRGP T +EFA+ LVE L GKE+A EV+  
Sbjct: 130 L-LNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  112 bits (283), Expect = 5e-33
 Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+PGA NL ++E L  ++K+  + G+L A ICA+PA  L   GLLKG KATCYP F ++
Sbjct: 68  GGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPA-VLAKAGLLKGKKATCYPGFEDK 126

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
           L    A  V+  V  DG ++TSRGP T  EFA+ +VE L
Sbjct: 127 LG--GANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score = 76.6 bits (189), Expect = 4e-19
 Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA +L++ E L   VK+    G+  A IC  P   L + GLLKG + T +PS  E 
Sbjct: 43  GGHAGAEDLRDDEKLVKFVKEFYESGKPIAAICHGPV-VLAAAGLLKGRRVTSFPSVKEL 101

Query: 61  LAPACATTVESRVPQDG-KVVTSRGPCTTMEFAVALVEQL 99
           L  A A  V+  V  DG K+VTS GP +  EFA+ L+E L
Sbjct: 102 LKNAGAEYVDQPVVVDGNKLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score = 70.2 bits (172), Expect = 4e-16
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ GA   ++S +L   V++    GR+ A ICA+PA  L    L      T +P+  ++
Sbjct: 74  GGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK 133

Query: 61  LAPACATTVESRVPQDGKV--VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +        + RV  D +V  +TS+GP T ++FA+ +++ L G+E+A EV+  LV+
Sbjct: 134 IPAE--QWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVM 187

Length = 196

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 64.5 bits (158), Expect = 5e-14
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
            G  G   L     L   +++QA+  +    +C + A  L + GLL G +AT + + ++ 
Sbjct: 69  PGGGGTRALVNDPALLDFIRRQAARAKYVTSVC-TGALLLAAAGLLDGRRATTHWAAIDW 127

Query: 61  LAPACATTVES-RVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSG 110
           L    A  V   R   DG + TS G    ++ A+ALV +L+G+E A  V+ 
Sbjct: 128 LKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVAL 178

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  G   L+    L + V+   ++G+  A IC  PA    +  LLKG KAT +P   E 
Sbjct: 74  GGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEED 133

Query: 61  LAPACATTVESRVPQ---------DGK-VVTSRGPCTTMEFAVALVEQLYGKERA 105
           +         + V           DG  +VT R P +   FA+ L++ L G E+A
Sbjct: 134 VKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAEKA 188

Length = 188

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG TN   L+      + V+  A  G+  A IC  P   L S G+++G K T YPS  +
Sbjct: 68  IPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKD 126

Query: 60  QLAPACATTVESRVPQDGKVVTSRGP 85
            L  A A  V+  V  DG ++TSR P
Sbjct: 127 DLINAGANWVDEEVVVDGNLITSRNP 152

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 3   VPGAT---NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG      L+ +     +V++    G+  A IC  P + L S G+L+G K T YP+ ++
Sbjct: 66  IPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIID 124

Query: 60  QLAPACATTVESR-VPQDGKVVTSRGP 85
            +  A A  V+   V  DG +VTSR P
Sbjct: 125 DVKNAGAEYVDIEVVVVDGNLVTSRVP 151

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
            G     N      L + +++ A  G     +C + A  L   GLL G +AT +    E 
Sbjct: 86  LGPERPVNAPA---LLAWLRRAARRGARLGGLC-TGAFVLAEAGLLDGRRATTHWEHAED 141

Query: 61  LA---PACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
                P      +     DG  +T  G    ++  +AL+ + +G   A+ V+  LVV
Sbjct: 142 FQERFPD-VRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV 197

Length = 328

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 15  LESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLA---PACATTVES 71
           L + +++ A  G     I  + A  L   GLL G +AT +   +E  A   P    T   
Sbjct: 84  LLAWLRRAARRGVALGGID-TGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVT-RD 141

Query: 72  RVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT 115
               DG  +T  G    ++  + L+ + +G   A  V+   +  
Sbjct: 142 LFEIDGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQFLHD 185

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 19  VKKQASDGRLNAVICASPAEA--LGSRGLLKGLKATCYPSFMEQLA---PACATTVESRV 73
           +++Q ++G   A + A+      L   GLL G +AT +     Q     P      +  V
Sbjct: 97  LRRQHANG---ATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVV 153

Query: 74  PQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
             DG ++T+ G     + A+ L+E+L G E A  V+  L++
Sbjct: 154 VTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLI 194

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 2   GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQL 61
           G P          L + +++ A+ G   A +C + A  L   GLL G +AT + ++ E L
Sbjct: 72  GGPDVDGRPPPPALLAALRRAAARGARVASVC-TGAFVLAEAGLLDGRRATTHWAYAEDL 130

Query: 62  APAC-ATTVESRV--PQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           A    A  V+  V    DG V TS G    ++  + LV +  G   A+ V+  LVV
Sbjct: 131 ARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLVV 186

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 17  SIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQD 76
           +IV+  A   +  A IC  P + L + G+LKG + T YP+   ++  A  T V+  V  D
Sbjct: 99  AIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVD 157

Query: 77  GKVVTSRG 84
           G +VT++ 
Sbjct: 158 GNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.94
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.94
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.93
COG4977	328	Transcriptional regulator containing an amidase do	99.93
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.93
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.93
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.92
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.9
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.9
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.9
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.89
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.89
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.88
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.88
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.88
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.87
PRK04155	287	chaperone protein HchA; Provisional	99.87
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.85
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.85
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.84
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.8
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.66
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.64
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.75
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.58
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.19
COG3155	217	ElbB Uncharacterized protein involved in an early	97.95
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	97.79
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	97.7
PRK11249	752	katE hydroperoxidase II; Provisional	97.66
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	97.17
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	97.16
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	96.84
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	96.49
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	96.43
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	96.36
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	96.28
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	96.25
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	95.98
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	95.97
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	95.9
PRK08250	235	glutamine amidotransferase; Provisional	95.65
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	95.58
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	95.32
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	95.12
PRK07053	234	glutamine amidotransferase; Provisional	95.12
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	95.11
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	94.47
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	94.46
PRK05665	240	amidotransferase; Provisional	94.09
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	93.43
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	93.42
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	93.32
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	93.3
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	93.24
PRK09065	237	glutamine amidotransferase; Provisional	93.08
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	92.78
PRK06490	239	glutamine amidotransferase; Provisional	92.61
PRK06895	190	putative anthranilate synthase component II; Provi	92.52
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	92.37
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	91.95
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	91.76
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	91.36
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	91.31
PRK07765	214	para-aminobenzoate synthase component II; Provisio	90.57
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	90.08
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	89.92
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	89.83
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	89.79
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	89.53
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	88.98
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	88.75
PLN02617	538	imidazole glycerol phosphate synthase hisHF	88.65
PRK00784	488	cobyric acid synthase; Provisional	87.78
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	87.72
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	87.61
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	87.56
PHA03366	1304	FGAM-synthase; Provisional	87.35
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	87.33
TIGR00313	475	cobQ cobyric acid synthase CobQ.	87.05
COG2071	243	Predicted glutamine amidotransferases [General fun	86.37
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	86.3
CHL00101	190	trpG anthranilate synthase component 2	86.17
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	85.97
PRK07567	242	glutamine amidotransferase; Provisional	85.57
PRK08007	187	para-aminobenzoate synthase component II; Provisio	85.55
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	85.46
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	84.93
PRK08857	193	para-aminobenzoate synthase component II; Provisio	84.76
PRK06774	191	para-aminobenzoate synthase component II; Provisio	84.67
PRK05670	189	anthranilate synthase component II; Provisional	83.91
PRK05637	208	anthranilate synthase component II; Provisional	83.79
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	83.01
PRK00758	184	GMP synthase subunit A; Validated	82.83
COG3442	250	Predicted glutamine amidotransferase [General func	82.59
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	82.44
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	82.18
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	81.5
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	81.4
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	80.25

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.94  E-value=3.9e-26  Score=157.71  Aligned_cols=111  Identities=28%  Similarity=0.399  Sum_probs=102.3

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccc-ccCcEEecCCeEcC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATT-VESRVPQDGKVVTS   82 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~-~~~~~v~dg~i~T~   82 (121)
                      .++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+..+ .++.++.|||++||
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~  150 (183)
T cd03139          72 GGTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTS  150 (183)
T ss_pred             cchhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEc
Confidence            556667789999999999999999999999986 7999999999999999999999998775555 78889999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           83 RGPCTTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        83 ~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      +|+.++++|++++|++++|++.++++++.|.++
T Consensus       151 ~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         151 GGVSAGIDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             CcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.94  E-value=4.2e-26  Score=160.79  Aligned_cols=117  Identities=50%  Similarity=0.768  Sum_probs=110.0

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV   80 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~   80 (121)
                      ||.+|++.|..++.+.+.+++|.+.+++|++||+||..+|+.-|++.|+++|+|+...+.|.+.|++|+++++++|||++
T Consensus        75 GG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~li  154 (247)
T KOG2764|consen   75 GGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLI  154 (247)
T ss_pred             CCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEE
Confidence            77899999999999999999999999999999999866777778888999999999999998878999999999999999


Q ss_pred             cCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375           81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI  117 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~  117 (121)
                      |++||.++++|++.|+|++.|++.+.++.+.|.+.++
T Consensus       155 TSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~~  191 (247)
T KOG2764|consen  155 TSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLFL  191 (247)
T ss_pred             eccCCCchHHHHHHHHHHhcCchhhhhhhccceeecc
Confidence            9999999999999999999999999999999988764

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.93  E-value=8.8e-26  Score=157.68  Aligned_cols=107  Identities=26%  Similarity=0.321  Sum_probs=97.6

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--cccccc-CcEEecCCeEcCCC
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVE-SRVPQDGKVVTSRG   84 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~-~~~v~dg~i~T~~g   84 (121)
                      .+..|+.+++||+++.+++++|++||+|+ ++|+++|+|+|+++|+||...+.+++.  +..+.+ ..++.|||++||+|
T Consensus        86 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g  164 (195)
T cd03138          86 LLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGG  164 (195)
T ss_pred             hhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEccc
Confidence            57789999999999999999999999986 799999999999999999999999875  344554 67899999999999


Q ss_pred             hhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           85 PCTTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        85 ~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      +.++++|++++|++++|.+.++++++.|.++
T Consensus       165 ~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         165 AMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999999999988764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.93  E-value=7.5e-26  Score=168.63  Aligned_cols=113  Identities=23%  Similarity=0.315  Sum_probs=101.7

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccCcEEecCCeEcCC
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~~~v~dg~i~T~~   83 (121)
                      ++.....+.+..||++.+++|..++++|+| +|+||++|||+||++|+||.+.+.|++.  .+...+..+++||++|||+
T Consensus        88 ~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~a  166 (328)
T COG4977          88 PERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCA  166 (328)
T ss_pred             cccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcC
Confidence            444444488999999999999999999998 6899999999999999999999999887  2344456799999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           84 GPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        84 g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      |.++++||+++||++.+|.+.+.++++.+++++.+.
T Consensus       167 G~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~  202 (328)
T COG4977         167 GGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS  202 (328)
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence            999999999999999999999999999999998764

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.93  E-value=1.3e-25  Score=155.78  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=98.6

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccCcEEecCCeEcCCChh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVESRVPQDGKVVTSRGPC   86 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~~~v~dg~i~T~~g~~   86 (121)
                      +..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.  +.++.++.++.|||++|++|+.
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~  156 (185)
T cd03136          78 RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGT  156 (185)
T ss_pred             ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHH
Confidence            6789999999999999999999999985 799999999999999999999999776  4566778899999999999999


Q ss_pred             hHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           87 TTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        87 ~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      ++++|++++|++++|++.++++++.|+++
T Consensus       157 ~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         157 AALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            99999999999999999999999998864

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.93  E-value=4.6e-25  Score=151.98  Aligned_cols=107  Identities=54%  Similarity=0.864  Sum_probs=95.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccc-ccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATT-VESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~-~~~~~v~dg~i   79 (121)
                      ||..+...+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+..  ..+ .++.+++|||+
T Consensus        71 Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~~v~dg~i  147 (179)
T TIGR01383        71 GGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLN--GNYSVNEAVVVDGNI  147 (179)
T ss_pred             CCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccC--CceeCCCCEEEeCCE
Confidence            343345566789999999999999999999999985 79999999999999999998888865  355 47789999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhc
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSG  110 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~  110 (121)
                      +||+|+.++++|++++|++++|++.++++++
T Consensus       148 ~T~~g~~a~~d~~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       148 ITSRGPGTAIEFALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             EECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence            9999999999999999999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.92  E-value=7.3e-25  Score=152.02  Aligned_cols=111  Identities=27%  Similarity=0.360  Sum_probs=98.8

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--cccccc-CcEEecCCeE
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVE-SRVPQDGKVV   80 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~-~~~v~dg~i~   80 (121)
                      .++..+..|+.+++||+++.+++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.  +..+.+ ..++.|||++
T Consensus        74 ~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~  152 (187)
T cd03137          74 PDVDGRPPPPALLAALRRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVW  152 (187)
T ss_pred             cccccccCCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEE
Confidence            445557789999999999999999999999986 799999999999999999999999875  344544 4578899999


Q ss_pred             cCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      ||+|+.+++++++++|++++|++.++++++.|.++
T Consensus       153 Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~  187 (187)
T cd03137         153 TSAGVTAGIDLCLHLVREDLGAAVANRVARRLVVP  187 (187)
T ss_pred             EcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999988753

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.90  E-value=7.1e-23  Score=143.34  Aligned_cols=115  Identities=32%  Similarity=0.559  Sum_probs=100.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecC--C
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDG--K   78 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg--~   78 (121)
                      ||..++..+..++.+++||+++++++++|++||+|+.++|+.+|+++|+++|+++...+.+..  .++.++++++|+  |
T Consensus        74 GG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~--~~~~~~~~v~d~~~~  151 (196)
T PRK11574         74 GGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPA--EQWQDKRVVWDARVN  151 (196)
T ss_pred             CCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhccc--CcccCCCEEEeCCcc
Confidence            444455667788899999999999999999999997546777999999999998887776643  567788888886  9


Q ss_pred             eEcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375           79 VVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI  117 (121)
Q Consensus        79 i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~  117 (121)
                      ++||+|++++++|++++|++++|.+.++++++.|++++.
T Consensus       152 iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~  190 (196)
T PRK11574        152 LLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAG  190 (196)
T ss_pred             EEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence            999999999999999999999999999999999998874

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.90  E-value=3e-23  Score=141.48  Aligned_cols=95  Identities=31%  Similarity=0.453  Sum_probs=86.8

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccccc-CcEEecCCeEcC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVE-SRVPQDGKVVTS   82 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~-~~~v~dg~i~T~   82 (121)
                      .++..+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+..+++ +.+++|||+|||
T Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~  148 (166)
T TIGR01382        70 RAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTS  148 (166)
T ss_pred             CCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEe
Confidence            456666678999999999999999999999986 699999999999999999999999877778888 689999999999


Q ss_pred             CChhhHHHHHHHHHHHh
Q 038375           83 RGPCTTMEFAVALVEQL   99 (121)
Q Consensus        83 ~g~~~~~~~a~~li~~~   99 (121)
                      +|+.++.+|+.++++.+
T Consensus       149 ~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382       149 RVPDDLPAFNREFLKLL  165 (166)
T ss_pred             CCcccHHHHHHHHHHHh
Confidence            99999999999999876

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.90  E-value=4e-23  Score=138.95  Aligned_cols=98  Identities=42%  Similarity=0.651  Sum_probs=86.8

Q ss_pred             CCccchhCcccC-HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccccc--CcEEecC
Q 038375            1 GGVPGATNLKES-EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVE--SRVPQDG   77 (121)
Q Consensus         1 gG~~g~~~l~~~-~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~--~~~v~dg   77 (121)
                      ||..+++.+..+ +.+++++++|++++|+|++||+|| .+|+.+|+|+|+++|+++...+.++..|..+.+  ..+++|+
T Consensus        45 GG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~  123 (147)
T PF01965_consen   45 GGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGP-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDG  123 (147)
T ss_dssp             -BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCH-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEET
T ss_pred             CCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCc-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEEC
Confidence            566668889855 999999999999999999999998 599999999999999999998878777888877  7899999


Q ss_pred             -CeEcCCChhhHHHHHHHHHHHh
Q 038375           78 -KVVTSRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        78 -~i~T~~g~~~~~~~a~~li~~~   99 (121)
                       |+||++++.++.+|++++++.|
T Consensus       124 ~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen  124 GNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             TTEEEESSGGGHHHHHHHHHHHH
T ss_pred             CeEEECCChhhHHHHHHHHHHHc
Confidence             9999999999999999999987

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.89  E-value=4.7e-23  Score=139.72  Aligned_cols=92  Identities=49%  Similarity=0.809  Sum_probs=83.7

Q ss_pred             chhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCCC
Q 038375            5 GATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRG   84 (121)
Q Consensus         5 g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~g   84 (121)
                      ++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.+  .+.++.++.+++|||++||+|
T Consensus        72 ~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~~v~dg~l~T~~g  148 (163)
T cd03135          72 GAQNLADNEKLIKLLKEFNAKGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEPVVVDGNIITSRG  148 (163)
T ss_pred             hHHHHHhCHHHHHHHHHHHHcCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhc--CCCeEecCCEEEECCEEEcCC
Confidence            56667789999999999999999999999985 799999999999999999888777  247778889999999999999


Q ss_pred             hhhHHHHHHHHHHHh
Q 038375           85 PCTTMEFAVALVEQL   99 (121)
Q Consensus        85 ~~~~~~~a~~li~~~   99 (121)
                      +.++.+|++++|+++
T Consensus       149 ~~s~~d~al~li~~l  163 (163)
T cd03135         149 PGTAFEFALKIVEAL  163 (163)
T ss_pred             cccHHHHHHHHHHhC
Confidence            999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.89  E-value=1.1e-22  Score=138.56  Aligned_cols=93  Identities=32%  Similarity=0.464  Sum_probs=85.5

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~   83 (121)
                      +++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+.++.++.+++|||+|||+
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~  150 (165)
T cd03134          72 TNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSR  150 (165)
T ss_pred             CChhhhccCHHHHHHHHHHHHcCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEec
Confidence            456667789999999999999999999999986 6999999999999999999999998766778888999999999999


Q ss_pred             ChhhHHHHHHHHHH
Q 038375           84 GPCTTMEFAVALVE   97 (121)
Q Consensus        84 g~~~~~~~a~~li~   97 (121)
                      |+.++++|+..+|+
T Consensus       151 ~~~~~~~f~~~~~~  164 (165)
T cd03134         151 NPDDLPAFNRAILK  164 (165)
T ss_pred             CcchHHHHHHHHHh
Confidence            99999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.88  E-value=2e-22  Score=139.42  Aligned_cols=95  Identities=28%  Similarity=0.417  Sum_probs=85.8

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~   83 (121)
                      .++..+..++.+++||+++++++++|++||+|+ ++|+++|+|+||++|+||...+.+++.+..+.++++++|||+|||+
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~  164 (180)
T cd03169          86 RAPEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQ  164 (180)
T ss_pred             CChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEec
Confidence            455566678999999999999999999999986 6999999999999999999999998776667788899999999999


Q ss_pred             ChhhHHHHHHHHHHHh
Q 038375           84 GPCTTMEFAVALVEQL   99 (121)
Q Consensus        84 g~~~~~~~a~~li~~~   99 (121)
                      |+.+..+|+.++++.+
T Consensus       165 ~~~~~~~f~~~~~~~l  180 (180)
T cd03169         165 AWPDHPAFLREFLKLL  180 (180)
T ss_pred             CCchHHHHHHHHHHhC
Confidence            9999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.88  E-value=1.9e-22  Score=144.91  Aligned_cols=98  Identities=24%  Similarity=0.364  Sum_probs=84.9

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc-------CCCCCCeeecCcch----------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-------GLLKGLKATCYPSF----------------   57 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a-------Gll~g~~~t~~~~~----------------   57 (121)
                      ||.+++.++.+|+.++++|++|++++|+|++|||||+ +|+.+       ++++||++|+++..                
T Consensus       102 GG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~  180 (231)
T cd03147         102 GGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNL  180 (231)
T ss_pred             CCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCC
Confidence            6767788899999999999999999999999999996 77776       89999999999865                


Q ss_pred             ---HHhhccccccccc------CcEEecCCeEcCCChhhHHHHHHHHHHHh
Q 038375           58 ---MEQLAPACATTVE------SRVPQDGKVVTSRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        58 ---~~~l~~~g~~~~~------~~~v~dg~i~T~~g~~~~~~~a~~li~~~   99 (121)
                         .+.+++.|+.|++      ..+++|||+||+++|.++.+|++.+++.|
T Consensus       181 ~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         181 ESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             ccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence               3445555777764      34999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.88  E-value=6.4e-22  Score=147.76  Aligned_cols=113  Identities=25%  Similarity=0.352  Sum_probs=98.6

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccC-cEEecCCeE
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVES-RVPQDGKVV   80 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~-~~v~dg~i~   80 (121)
                      .+... ..++.+++||+++.+++++|++||+|+ ++|+++|+|+|+++|+||...+.+++.  ...+.++ .++.|||++
T Consensus        85 ~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~ii  162 (322)
T PRK09393         85 RGPDA-PVPEPLLEALRAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL  162 (322)
T ss_pred             Ccccc-cCCHHHHHHHHHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEE
Confidence            44433 469999999999999999999999986 799999999999999999999999764  2334444 578889999


Q ss_pred             cCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      ||+|+.+++++++++|++.+|.+.++.+++.|++++.+
T Consensus       163 T~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             ecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence            99999999999999999999999999999999887654

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.87  E-value=6e-22  Score=135.23  Aligned_cols=91  Identities=29%  Similarity=0.439  Sum_probs=77.6

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccc--ccc-cCcEEecCCeEcC
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACA--TTV-ESRVPQDGKVVTS   82 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~--~~~-~~~~v~dg~i~T~   82 (121)
                      ......++.+++||+++.+++++|+++|+| +++|+++|+|+|+++|+||...+.+++...  .+. ++.++.|||++||
T Consensus        73 ~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta  151 (166)
T PF13278_consen   73 FDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITA  151 (166)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEE
T ss_pred             chhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEe
Confidence            455667899999999999999999999998 589999999999999999999999988732  233 6789999999999


Q ss_pred             CChhhHHHHHHHHHH
Q 038375           83 RGPCTTMEFAVALVE   97 (121)
Q Consensus        83 ~g~~~~~~~a~~li~   97 (121)
                      +|+.+++|+++++||
T Consensus       152 ~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  152 GGPTAAIDLALYLIE  166 (166)
T ss_dssp             SSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhC
Confidence            999999999999996

...

>PRK04155 chaperone protein HchA; Provisional

Probab=99.87  E-value=7.2e-22  Score=145.66  Aligned_cols=100  Identities=26%  Similarity=0.396  Sum_probs=88.7

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC------CCCCCeeecCcch-----------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCYPSF-----------------   57 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG------ll~g~~~t~~~~~-----------------   57 (121)
                      ||..++..|..|+.++++|+++++++|+|++|||||+ +|..++      +++||++|+++..                 
T Consensus       155 GG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~  233 (287)
T PRK04155        155 GGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTW  233 (287)
T ss_pred             CCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccc
Confidence            6777789999999999999999999999999999996 677788      9999999999865                 


Q ss_pred             --HHhhccccccccc----CcEEecCCeEcCCChhhHHHHHHHHHHHhcC
Q 038375           58 --MEQLAPACATTVE----SRVPQDGKVVTSRGPCTTMEFAVALVEQLYG  101 (121)
Q Consensus        58 --~~~l~~~g~~~~~----~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~  101 (121)
                        .+.|++.|+++++    ..+|+|||+||+++|.++.+|++.+++.+..
T Consensus       234 ~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~  283 (287)
T PRK04155        234 LFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA  283 (287)
T ss_pred             hHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence              4556666878877    5799999999999999999999999998863

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.85  E-value=3.6e-21  Score=137.45  Aligned_cols=98  Identities=28%  Similarity=0.421  Sum_probs=82.8

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC------CCCCCeeecCcchHHh--------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCYPSFMEQ--------------   60 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG------ll~g~~~t~~~~~~~~--------------   60 (121)
                      ||......+..|+.+++||+++.+++++|++||+|+ ++|+++|      +|+||++|+||...+.              
T Consensus        98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~  176 (221)
T cd03141          98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED  176 (221)
T ss_pred             CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence            443335568899999999999999999999999997 6899999      7999999999875443              


Q ss_pred             -hccccccccc-----CcEEecCCeEcCCChhhHHHHHHHHHHHh
Q 038375           61 -LAPACATTVE-----SRVPQDGKVVTSRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        61 -l~~~g~~~~~-----~~~v~dg~i~T~~g~~~~~~~a~~li~~~   99 (121)
                       +++.|.++.+     ..+|+|+|+||++++.++.+|++.+|+.+
T Consensus       177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence             5555666654     45999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.85  E-value=5.3e-21  Score=137.52  Aligned_cols=99  Identities=19%  Similarity=0.371  Sum_probs=84.6

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCC------CCCCeeecCcchHHh--------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGL------LKGLKATCYPSFMEQ--------------   60 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGl------l~g~~~t~~~~~~~~--------------   60 (121)
                      ||..++.++..|+.+++++++|++++|+|++|||||+ +|..+++      ++||++|+++...+.              
T Consensus       104 GG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~p  182 (232)
T cd03148         104 GGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLT  182 (232)
T ss_pred             CCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccc
Confidence            7777889999999999999999999999999999996 6777888      999999999876553              


Q ss_pred             ------hcccccccccC----cEEecCCeEcCCChhhHHHHHHHHHHHhc
Q 038375           61 ------LAPACATTVES----RVPQDGKVVTSRGPCTTMEFAVALVEQLY  100 (121)
Q Consensus        61 ------l~~~g~~~~~~----~~v~dg~i~T~~g~~~~~~~a~~li~~~~  100 (121)
                            +++.|+.+...    .+|+|||+||+++|.|+..++..+|+.+.
T Consensus       183 f~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         183 WLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             ccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence                  22335555443    78999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.84  E-value=2.1e-20  Score=128.37  Aligned_cols=89  Identities=29%  Similarity=0.457  Sum_probs=76.1

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcc-hHHhhccc---ccccccCcEEecCCeEcCCCh
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPS-FMEQLAPA---CATTVESRVPQDGKVVTSRGP   85 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~-~~~~l~~~---g~~~~~~~~v~dg~i~T~~g~   85 (121)
                      ..++.+++||+++.+++++|+++|+|+ ++|+++|+|+||++|+||. ..+.++..   +..+.++.+++|||+|||+|+
T Consensus        75 ~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~  153 (170)
T cd03140          75 PEAPDLAGLVRQALKQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGT  153 (170)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCc
Confidence            378999999999999999999999986 6999999999999999985 55666542   245567889999999999875


Q ss_pred             hhHHHHHHHHHHHhc
Q 038375           86 CTTMEFAVALVEQLY  100 (121)
Q Consensus        86 ~~~~~~a~~li~~~~  100 (121)
                      + +++|++.+|+.+.
T Consensus       154 a-~~d~al~~i~~l~  167 (170)
T cd03140         154 A-PVEFAAEILRALD  167 (170)
T ss_pred             C-HHHHHHHHHHHcC
Confidence            4 7999999999764

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.80  E-value=2.8e-19  Score=124.36  Aligned_cols=102  Identities=38%  Similarity=0.595  Sum_probs=93.1

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC-CCCCCeeecCcchHHhhcc----cccccccC----
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG-LLKGLKATCYPSFMEQLAP----ACATTVES----   71 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG-ll~g~~~t~~~~~~~~l~~----~g~~~~~~----   71 (121)
                      ||..++..++.++.+++|++++++++|+|++|||||+ +|+.+| +++|+++|+++...+....    .|.++++.    
T Consensus        74 GG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~  152 (188)
T COG0693          74 GGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWT  152 (188)
T ss_pred             CCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCc
Confidence            5557888888889999999999999999999999985 899999 9999999999998888877    57888887    


Q ss_pred             -cEEecCC-eEcCCChhhHHHHHHHHHHHhcCHH
Q 038375           72 -RVPQDGK-VVTSRGPCTTMEFAVALVEQLYGKE  103 (121)
Q Consensus        72 -~~v~dg~-i~T~~g~~~~~~~a~~li~~~~~~~  103 (121)
                       .+++||+ ++|+.++.+..+|+..+++.+.+..
T Consensus       153 ~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         153 DEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             CCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence             8999999 9999999999999999999988753

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.66  E-value=3.1e-16  Score=111.43  Aligned_cols=83  Identities=22%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCc--chHHhhcccccccccC---cEEec--CCeEcC
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYP--SFMEQLAPACATTVES---RVPQD--GKVVTS   82 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~--~~~~~l~~~g~~~~~~---~~v~d--g~i~T~   82 (121)
                      +.|+.+++++++|++++|+|++||+||+ +|+.+.. +||++|+++  ..++.+++.|+.|++.   .+++|  ||+|||
T Consensus       109 ~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs  186 (213)
T cd03133         109 TVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVEEIVVDEKNKVVTT  186 (213)
T ss_pred             ccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCCeEEEECCCCEEeC
Confidence            3489999999999999999999999986 7787655 999999999  8888898778888863   67776  799999


Q ss_pred             CChh---hHHHHHHH
Q 038375           83 RGPC---TTMEFAVA   94 (121)
Q Consensus        83 ~g~~---~~~~~a~~   94 (121)
                      +.+.   +..+.++.
T Consensus       187 ~~~~~~~~~~~~~~~  201 (213)
T cd03133         187 PAYMLADSIHEIADG  201 (213)
T ss_pred             ccccCCCCHHHHHHh
Confidence            8863   44554443

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.64  E-value=5.9e-16  Score=110.39  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             hCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecC--cchHHhhcccccccccC---cEEec--CCe
Q 038375            7 TNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCY--PSFMEQLAPACATTVES---RVPQD--GKV   79 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~--~~~~~~l~~~g~~~~~~---~~v~d--g~i   79 (121)
                      +.++.|+.+++++++|++++|+|++|||||+ +|+.+.. +||++|++  +...+.+++.|++|++.   .+|+|  +|+
T Consensus       109 ~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~~~vvvD~~~~l  186 (217)
T PRK11780        109 AECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPVDDIVVDEENKV  186 (217)
T ss_pred             hhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCCCeEEEECCCCE
Confidence            3446699999999999999999999999996 6777522 89999999  99999998889999885   78888  789


Q ss_pred             EcCCCh
Q 038375           80 VTSRGP   85 (121)
Q Consensus        80 ~T~~g~   85 (121)
                      ||+...
T Consensus       187 vt~~~~  192 (217)
T PRK11780        187 VTTPAY  192 (217)
T ss_pred             EeCCcc
Confidence            999974

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.75  E-value=3.9e-08  Score=65.33  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCC
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLL   46 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll   46 (121)
                      ||......+..++.+++||+++++++++|+++|+|+ ++|+++|+|
T Consensus        70 Gg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~-~~La~aGll  114 (142)
T cd03132          70 GGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS-DLLEAAGIP  114 (142)
T ss_pred             CCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH-HHHHHcCCC
Confidence            343334455788999999999999999999999986 699999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.58  E-value=9.6e-08  Score=69.03  Aligned_cols=66  Identities=26%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR   83 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~   83 (121)
                      +.++|+++.++++++.+||.|.+ +|+++|+|.|+. +.++......... ..+++..++.|++++|+.
T Consensus        71 ~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~-~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          71 LMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQ-NRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             HHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceecccc-CceEEEEEcCCCCceecC
Confidence            88999999999999999999975 899999999866 5555433222211 134555566677777765

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.19  E-value=3.4e-06  Score=60.30  Aligned_cols=40  Identities=28%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCe
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLK   50 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~   50 (121)
                      ..++.+++||+++.++++++++||+|. .+|+++|||+|+-
T Consensus        63 ~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l  102 (219)
T PRK03619         63 AAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL  102 (219)
T ss_pred             hhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence            346789999999999999999999986 5999999999853

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.95  E-value=4.8e-05  Score=52.06  Aligned_cols=83  Identities=27%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             CCccchhCccc----------CHHHHHHHHHHHhCCCeEEEechhHHHHHHh-cCCCCCCeeecCcchHHhhcccccccc
Q 038375            1 GGVPGATNLKE----------SEVLESIVKKQASDGRLNAVICASPAEALGS-RGLLKGLKATCYPSFMEQLAPACATTV   69 (121)
Q Consensus         1 gG~~g~~~l~~----------~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~-aGll~g~~~t~~~~~~~~l~~~g~~~~   69 (121)
                      ||+..+++|.+          +|.+..+.+.|++.||+++-+|.+|+ +|.. -|.--.-++.......+.++..|...+
T Consensus        93 GGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pki~g~~~~~TIGnD~dTa~a~~~mG~eHv  171 (217)
T COG3155          93 GGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPKIFGFPLRLTIGNDIDTAEALEEMGAEHV  171 (217)
T ss_pred             CccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHHHcCCceeEEecCCccHHHHHHHhCcccC
Confidence            67777777654          89999999999999999999999997 5655 233212244455677888887787776


Q ss_pred             c---CcEEec--CCeEcCCC
Q 038375           70 E---SRVPQD--GKVVTSRG   84 (121)
Q Consensus        70 ~---~~~v~d--g~i~T~~g   84 (121)
                      +   ..+|+|  ++++|...
T Consensus       172 ~cPvd~iV~D~~~KvvtTPA  191 (217)
T COG3155         172 PCPVDDIVVDEDNKVVTTPA  191 (217)
T ss_pred             CCCccceeecCCCceecChH
Confidence            5   346665  78888654

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=97.79  E-value=5.2e-05  Score=54.42  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCC
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGL   49 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~   49 (121)
                      ..++.+.++|+++.+++++|.+||.|. .+|+.+|+|+|.
T Consensus        62 ~~~~~~~~~l~~~~~~g~pvlgIC~G~-QlLa~~GlL~G~  100 (227)
T TIGR01737        62 AAASPIMQEVREFAEKGVPVLGICNGF-QILVEAGLLPGA  100 (227)
T ss_pred             hcchHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCc
Confidence            345678899999999999999999986 589999999874

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=97.70  E-value=8e-05  Score=54.70  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSRGLLKG   48 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g   48 (121)
                      +.+.|+++.++++++.+||.|.+ +|+++|+|.|
T Consensus        78 l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg  110 (261)
T PRK01175         78 LRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPG  110 (261)
T ss_pred             HHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCC
Confidence            45788999999999999999976 8999999987

>PRK11249 katE hydroperoxidase II; Provisional

Probab=97.66  E-value=6.8e-05  Score=62.00  Aligned_cols=46  Identities=11%  Similarity=0.047  Sum_probs=40.6

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCC
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLK   47 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~   47 (121)
                      ||..++..+..++.++.||+++++++|+|+++|+|+ .+|+++||.+
T Consensus       666 GG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~-~LLaaAGL~~  711 (752)
T PRK11249        666 GGKANIADLADNGDARYYLLEAYKHLKPIALAGDAR-KLKAALKLPD  711 (752)
T ss_pred             CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccH-HHHHhcCCCC
Confidence            455567888899999999999999999999999985 6999999954

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.17  E-value=0.00029  Score=49.01  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=30.8

Q ss_pred             CCccchh--CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            1 GGVPGAT--NLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         1 gG~~g~~--~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      || .+..  ++.++..+.+.|+++.+ ++++.+||.|++ +|++
T Consensus        47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~   87 (179)
T PRK13526         47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK   87 (179)
T ss_pred             CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence            44 4455  66677789999999875 789999999985 7877

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=97.16  E-value=0.00049  Score=48.41  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ++.|.+++.+.+.|+++.+++++|.+||.|.+ +|.+
T Consensus        55 ~~~L~~~~~~~~~i~~~~~~g~pilgICgG~q-lL~~   90 (198)
T cd03130          55 AEELSANQSMRESIRAFAESGGPIYAECGGLM-YLGE   90 (198)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCCEEEEcccHH-HHHH
Confidence            45676778899999999999999999999975 6775

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=96.84  E-value=0.00093  Score=46.56  Aligned_cols=35  Identities=14%  Similarity=0.050  Sum_probs=29.4

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ++.++..+.+.|+++.++++++.+||.|.+ +|++.
T Consensus        52 ~l~~~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~   86 (184)
T TIGR03800        52 RLLDKYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE   86 (184)
T ss_pred             HHHHhccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence            444566788999999999999999999975 78876

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.49  E-value=0.0062  Score=43.79  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKG   48 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g   48 (121)
                      +.+.+-+++++++++++.+||+|-+ +|.++|||.|
T Consensus        68 ~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG  102 (231)
T COG0047          68 APVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG  102 (231)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence            6788889999999999999999976 7889999988

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.43  E-value=0.0034  Score=43.84  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=27.6

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +..+..+.++++++.++++++.+||.|.+ +|+.
T Consensus        55 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~   87 (189)
T PRK13525         55 LLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAK   87 (189)
T ss_pred             HHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHh
Confidence            44556678999999999999999999976 7776

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.36  E-value=0.0038  Score=49.09  Aligned_cols=41  Identities=24%  Similarity=0.444  Sum_probs=33.8

Q ss_pred             CCccc--hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            1 GGVPG--ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         1 gG~~g--~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ||.+.  ...+..+..+.+.|+++.++|++|.++|.|.+ +|++
T Consensus       295 GG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~  337 (451)
T PRK01077        295 GGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLM-YLGE  337 (451)
T ss_pred             CCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence            45444  46677888999999999999999999999975 7775

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.28  E-value=0.0041  Score=43.72  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +...+.+.++|+++.++++++.+||.|.+ +|+++
T Consensus        54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~   87 (200)
T PRK13143         54 MENLSPLRDVILEAARSGKPFLGICLGMQ-LLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            44556788999999999999999999976 78864

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.25  E-value=0.0051  Score=43.17  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +..+..+.++|+++.++++++.+||.|.+ +|+.+
T Consensus        60 ~~~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~   93 (200)
T PRK13527         60 LMKREGILDEIKEKIEEGLPILGTCAGLI-LLAKE   93 (200)
T ss_pred             HHhhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            33555689999999999999999999975 77775

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.98  E-value=0.016  Score=34.85  Aligned_cols=29  Identities=24%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHH
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEAL   40 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lL   40 (121)
                      .++.++++++++.+++++++++|.|.. ++
T Consensus        64 ~~~~~~~~i~~~~~~~~~i~~~c~g~~-~l   92 (115)
T cd01653          64 RDEALLALLREAAAAGKPILGICLGAQ-LL   92 (115)
T ss_pred             cCHHHHHHHHHHHHcCCEEEEECchhH-hH
Confidence            478999999999999999999999864 55

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=95.97  E-value=0.0045  Score=45.48  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             cccCHHHHHHHHHHHhC-CCeEEEechhHHHHHHhcCCCCC
Q 038375            9 LKESEVLESIVKKQASD-GRLNAVICASPAEALGSRGLLKG   48 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~-~~~i~aic~g~~~lLa~aGll~g   48 (121)
                      ++.++.+.+.|++|.++ ++++.+||+|- -+|.++|||.+
T Consensus        72 ~~~~~~~~~~i~~f~~~~g~~vLGIcNGf-QiL~~~Gllp~  111 (259)
T PF13507_consen   72 LLFNSPLMDAIREFLERPGGFVLGICNGF-QILVELGLLPG  111 (259)
T ss_dssp             HCCSCCCHHHHHHHHHCTT-EEEEECHHH-HHHCCCCCSTT
T ss_pred             hhccHHHHHHHHHHHhcCCCeEEEEchHh-HHHHHhCcCCC
Confidence            33467778999999998 99999999985 59999999988

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=95.90  E-value=0.0073  Score=42.29  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +..+.+.|+++.++++++.+||.|.+ +|++.
T Consensus        58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~   88 (194)
T cd01750          58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKY   88 (194)
T ss_pred             HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhh
Confidence            45688999999999999999999975 67654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK08250 glutamine amidotransferase; Provisional

Probab=95.65  E-value=0.02  Score=41.34  Aligned_cols=30  Identities=10%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...++||+++.+.++++.+||.|.+ +|+.+
T Consensus        71 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         71 KAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             HHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            3668999999999999999999986 67764

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.58  E-value=0.018  Score=32.96  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.5

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhH
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASP   36 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~   36 (121)
                      .++.+++++.++..++++++++|.|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~i~~~~~g~   89 (92)
T cd03128          64 WDEALLALLREAAAAGKPVLGICLGA   89 (92)
T ss_pred             cCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            47889999999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=95.32  E-value=0.027  Score=38.85  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+.+.++|+++.++++++.+||.|.+ +|+.
T Consensus        67 ~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~   96 (188)
T cd01741          67 LKKLKELIRQALAAGKPVLGICLGHQ-LLAR   96 (188)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECccHH-HHHH
Confidence            36789999999999999999999976 6665

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.12  E-value=0.014  Score=41.03  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.+.++|+++.++++++.+||.|.+ +|+..
T Consensus        59 ~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         59 RGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             cChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            3578899999999999999999975 78875

>PRK07053 glutamine amidotransferase; Provisional

Probab=95.12  E-value=0.038  Score=39.92  Aligned_cols=30  Identities=10%  Similarity=0.201  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..++++|+++.+.++++.+||.|.+ +|+.+
T Consensus        70 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a   99 (234)
T PRK07053         70 APEIALLRQRLAAGLPTLGICLGAQ-LIARA   99 (234)
T ss_pred             HHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            4788999999999999999999976 67764

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=95.11  E-value=0.051  Score=37.41  Aligned_cols=31  Identities=16%  Similarity=-0.005  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ++...+++++++.++++++.+||.|.+ +|+.
T Consensus        54 ~~~~~~~~~~~~~~~~~PvlGIC~G~Q-~l~~   84 (178)
T cd01744          54 LLDEAIKTVRKLLGKKIPIFGICLGHQ-LLAL   84 (178)
T ss_pred             HhHHHHHHHHHHHhCCCCEEEECHHHH-HHHH
Confidence            346788899999999999999999976 5665

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=94.47  E-value=0.032  Score=38.66  Aligned_cols=31  Identities=16%  Similarity=0.119  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+..+.++|+++.++++++.+||.|.+ +|+.
T Consensus        54 ~~~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~   84 (183)
T cd01749          54 RRTGLLDPLREFIRAGKPVFGTCAGLI-LLAK   84 (183)
T ss_pred             HhCCHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence            455678899999999999999999965 7775

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=94.46  E-value=0.04  Score=37.27  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .+.++..+.+.|+++.++|.+|.++|.|- .+|.+.
T Consensus        24 ~l~~~~~~~~~I~~~~~~G~pi~aeCGG~-~~Lg~~   58 (158)
T PF07685_consen   24 ELSRNRGLKEAIREAAEAGGPIYAECGGY-QYLGES   58 (158)
T ss_pred             HHHHHhCHHHHHHHHHHcCCcEEEEchHH-HHHHHH
Confidence            45567889999999999999999999985 466653

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK05665 amidotransferase; Provisional

Probab=94.09  E-value=0.081  Score=38.39  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+.+||++..++++++.+||-|-+ +|+.+
T Consensus        78 ~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         78 QTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            5788999999999999999999976 77764

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=93.43  E-value=0.16  Score=35.29  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=24.5

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +....++++++.+.++++.+||.|.+ +|+.
T Consensus        86 ~~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~  115 (189)
T cd01745          86 DAFELALLRAALERGKPILGICRGMQ-LLNV  115 (189)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEcchHH-HHHH
Confidence            34567899999999999999999976 5554

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=93.42  E-value=0.1  Score=45.91  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=35.2

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKG   48 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g   48 (121)
                      .+..|+.+.+-+++|+++++++.+||+|-+ +|.+.|||.+
T Consensus      1056 a~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857      1056 AILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred             HHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence            455688999999999999999999999865 8999999975

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=93.32  E-value=0.085  Score=38.60  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +..+..+..+.+.|+++.++|+++.++|.|.+ +|++.
T Consensus        52 ~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~   88 (248)
T PLN02832         52 MAKLAERHNLFPALREFVKSGKPVWGTCAGLI-FLAER   88 (248)
T ss_pred             HHHHHhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            33454444688899999889999999999864 77653

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=93.30  E-value=0.15  Score=35.07  Aligned_cols=30  Identities=17%  Similarity=0.143  Sum_probs=25.7

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      -+..+.++++..++++++.+||-|-+ +|+.
T Consensus        58 ~~~~~~~i~~~~~~~~PilGIC~G~Q-~la~   87 (192)
T PF00117_consen   58 IEGLIELIREARERKIPILGICLGHQ-ILAH   87 (192)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEETHHHH-HHHH
T ss_pred             ccccccccccccccceEEEEEeehhh-hhHH
Confidence            57788899999999999999999976 6665

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=93.24  E-value=0.057  Score=37.87  Aligned_cols=36  Identities=17%  Similarity=0.062  Sum_probs=28.3

Q ss_pred             hhCcccCHHHHHHHHHHHhCC-CeEEEechhHHHHHHh
Q 038375            6 ATNLKESEVLESIVKKQASDG-RLNAVICASPAEALGS   42 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~-~~i~aic~g~~~lLa~   42 (121)
                      +..+.+...+.+-|+++..+| +++.+.|.| ..+|++
T Consensus        47 i~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~   83 (188)
T PF01174_consen   47 IGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK   83 (188)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence            335666678899999999998 999999998 457775

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK09065 glutamine amidotransferase; Provisional

Probab=93.08  E-value=0.15  Score=36.85  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+.+||++..+.++++.+||-|-+ +|+.+
T Consensus        75 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  104 (237)
T PRK09065         75 ERTADWLRQAAAAGMPLLGICYGHQ-LLAHA  104 (237)
T ss_pred             HHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence            5678999999999999999999976 67753

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=92.78  E-value=0.1  Score=36.45  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=26.8

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .++.+.++++++.++++++.+||.|.+ +|+.+
T Consensus        56 ~~~~~~~~i~~~~~~~~pilGiC~G~q-~l~~~   87 (198)
T cd01748          56 RERGLIEALKEAIASGKPFLGICLGMQ-LLFES   87 (198)
T ss_pred             HHcChHHHHHHHHHCCCcEEEECHHHH-Hhccc
Confidence            344578999999999999999999965 78876

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06490 glutamine amidotransferase; Provisional

Probab=92.61  E-value=0.21  Score=36.14  Aligned_cols=30  Identities=10%  Similarity=0.077  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+++||++..+.++++.+||-|-+ +|+.+
T Consensus        73 ~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a  102 (239)
T PRK06490         73 RREIDWISVPLKENKPFLGICLGAQ-MLARH  102 (239)
T ss_pred             HHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            3577999999999999999999976 77764

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=92.52  E-value=0.19  Score=34.88  Aligned_cols=30  Identities=10%  Similarity=0.091  Sum_probs=23.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .+.+.++|++ .+.++++.+||-|-+ +|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            4567788886 678999999999976 67764

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=92.37  E-value=0.16  Score=40.13  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+..+..+.+.|+++.++|.+|.++|.|- .+|.+
T Consensus       303 ~l~~~~~~~~~i~~~~~~G~pv~g~CgG~-~~L~~  336 (449)
T TIGR00379       303 ELSQNQALRDSIKTFIHQGLPIYGECGGL-MYLSQ  336 (449)
T ss_pred             HHHhhhHHHHHHHHHHHcCCCEEEEcHHH-HHHHh
Confidence            45567889999999999999999999985 46765

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=91.95  E-value=0.22  Score=44.20  Aligned_cols=42  Identities=12%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             hCcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHHhcCCCCCC
Q 038375            7 TNLKESEVLESIVKKQA-SDGRLNAVICASPAEALGSRGLLKGL   49 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa~aGll~g~   49 (121)
                      ..++.|+.+.+.+++|+ ++++++.+||+|-+ +|.+.|||.|.
T Consensus      1106 ~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~ 1148 (1307)
T PLN03206       1106 GSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGP 1148 (1307)
T ss_pred             HHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCC
Confidence            35667899999999999 55999999999855 89999999865

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=91.76  E-value=0.15  Score=36.32  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc---------CCCCCC
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR---------GLLKGL   49 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a---------Gll~g~   49 (121)
                      .+...|+++.++++++.+||-|-+ +|++.         |+++|+
T Consensus        62 gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~~~~~~~~glg~~~G~  105 (210)
T CHL00188         62 GLITPIKKWIAEGNPFIGICLGLH-LLFETSEEGKEEGLGIYKGQ  105 (210)
T ss_pred             CHHHHHHHHHHcCCCEEEECHHHH-HHhhccccCCcCCccceeEE
Confidence            456778888889999999999976 67763         567765

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=91.36  E-value=0.44  Score=36.74  Aligned_cols=30  Identities=10%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ++..+++++++.++++|+.+||-|.+ +|+.
T Consensus       234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~  263 (360)
T PRK12564        234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLAL  263 (360)
T ss_pred             HHHHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence            46778899999888999999999976 5654

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=91.31  E-value=0.25  Score=35.17  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+..+|+++..+++++.+||.|.+ +|++.
T Consensus        59 ~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~   88 (210)
T PRK14004         59 TGLRSTIDKHVESGKPLFGICIGFQ-ILFES   88 (210)
T ss_pred             cCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence            3578888888899999999999976 67663

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=90.57  E-value=0.44  Score=33.87  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +...++++++..+++++|.+||-|.+ +|+.
T Consensus        62 ~~~~~~~i~~~~~~~~PiLGIC~G~Q-lla~   91 (214)
T PRK07765         62 AGASIDMVRACAAAGTPLLGVCLGHQ-AIGV   91 (214)
T ss_pred             cchHHHHHHHHHhCCCCEEEEccCHH-HHHH
Confidence            34566899999999999999999976 6665

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=90.08  E-value=0.45  Score=33.62  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+....+|.+....+++|.+||-|.+ +||.
T Consensus        65 ~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~   94 (198)
T COG0518          65 LPREKDLIKDAGVPGKPVLGICLGHQ-LLAK   94 (198)
T ss_pred             chhHHHHHHHhCCCCCCEEEEChhHH-HHHH
Confidence            67889999999999999999999976 6775

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=89.92  E-value=0.43  Score=33.34  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=21.9

Q ss_pred             HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           16 ESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+++++.+.++++.+||.|.+ +|+.+
T Consensus        61 ~~l~~~~~~~~~pvlGiC~G~Q-ll~~~   87 (196)
T TIGR01855        61 DLFVELVVRLGKPVLGICLGMQ-LLFER   87 (196)
T ss_pred             HHHHHHHHhCCCCEEEECHHHH-Hhhhc
Confidence            3444778889999999999965 88887

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=89.83  E-value=0.35  Score=34.33  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=27.2

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALG   41 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa   41 (121)
                      ++.|... .+++.|++....+||+.+||-|.++++.
T Consensus        55 m~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe   89 (204)
T COG0118          55 MANLRER-GLIEAIKEAVESGKPFLGICLGMQLLFE   89 (204)
T ss_pred             HHHHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence            4445433 7899999999999999999999874444

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=89.79  E-value=0.4  Score=42.38  Aligned_cols=41  Identities=7%  Similarity=-0.049  Sum_probs=35.3

Q ss_pred             hhCcccCHHHHHHHHHHH-hCCCeEEEech-hHHHHHHhcCCCC
Q 038375            6 ATNLKESEVLESIVKKQA-SDGRLNAVICA-SPAEALGSRGLLK   47 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~-~~~~~i~aic~-g~~~lLa~aGll~   47 (121)
                      +..++.|+.+.+.+++|+ ++++++.+||+ |-+ +|.+.|++.
T Consensus       996 a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~ 1038 (1202)
T TIGR01739       996 AAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVG 1038 (1202)
T ss_pred             HHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCc
Confidence            456677999999999999 55999999999 965 899999984

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=89.53  E-value=0.43  Score=33.33  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .+.++|+++.+.++++.+||.|.+ +|+.+
T Consensus        60 ~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         60 GLDEALKEHVEKKQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             ChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence            467888888899999999999976 77775

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=88.98  E-value=0.31  Score=34.22  Aligned_cols=35  Identities=20%  Similarity=0.092  Sum_probs=28.5

Q ss_pred             hCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            7 TNLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ..|.....+.+-|+++..+|+|+.+.|.|. .+|++
T Consensus        53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak   87 (194)
T COG0311          53 GRLLKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK   87 (194)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence            355566678889999999999999999984 57775

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=88.75  E-value=0.5  Score=32.60  Aligned_cols=28  Identities=14%  Similarity=0.017  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...++++..++++++.+||-|-+ +|+.+
T Consensus        59 ~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   86 (188)
T TIGR00888        59 APRADEKIFELGVPVLGICYGMQ-LMAKQ   86 (188)
T ss_pred             chHHHHHHHhCCCCEEEECHHHH-HHHHh
Confidence            46788888899999999999976 67654

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=88.65  E-value=0.55  Score=38.10  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +..+.+.|+++.+.++|+.+||.|.+ +|+..
T Consensus        65 ~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         65 NRGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             HcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            33477788888899999999999976 78763

>PRK00784 cobyric acid synthase; Provisional

Probab=87.78  E-value=0.55  Score=37.46  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +..+..+.+.|+++.++|+++.++|.|-+ +|++
T Consensus       308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~  340 (488)
T PRK00784        308 WLRESGWDEAIRAHARRGGPVLGICGGYQ-MLGR  340 (488)
T ss_pred             HHHHcCHHHHHHHHHHcCCeEEEECHHHH-HHhh
Confidence            33555688999999999999999999864 6765

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=87.72  E-value=0.95  Score=33.06  Aligned_cols=32  Identities=9%  Similarity=0.033  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +|...+++++.+.+++++|.+||-|-+ +|+.+
T Consensus        92 rD~~e~~li~~a~~~~~PILGICrG~Q-llnva  123 (254)
T PRK11366         92 RDLLSMALINAALERRIPIFAICRGLQ-ELVVA  123 (254)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            345677999999999999999999976 66653

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=87.61  E-value=0.96  Score=31.37  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ....++++++ .+++|+.+||-|-+ +|+.+
T Consensus        60 ~~~~~~i~~~-~~~~PvLGIC~G~Q-ll~~~   88 (188)
T TIGR00566        60 GISLEAIRHF-AGKLPILGVCLGHQ-AMGQA   88 (188)
T ss_pred             chhHHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence            3347788877 67899999999976 66653

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=87.56  E-value=0.85  Score=40.73  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=35.0

Q ss_pred             CcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHH-hcCCCCCC
Q 038375            8 NLKESEVLESIVKKQA-SDGRLNAVICASPAEALG-SRGLLKGL   49 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa-~aGll~g~   49 (121)
                      .++.|+.+.+.+++|+ ++++++.+||+|-+ +|. ..||+.|.
T Consensus      1125 ~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1125 SILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred             HHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence            4667899999999999 88999999999865 677 89999763

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PHA03366 FGAM-synthase; Provisional

Probab=87.35  E-value=0.66  Score=41.40  Aligned_cols=41  Identities=5%  Similarity=-0.077  Sum_probs=35.4

Q ss_pred             hhCcccCHHHHHHHHHHH-hCCCeEEEech-hHHHHHHhcCCCC
Q 038375            6 ATNLKESEVLESIVKKQA-SDGRLNAVICA-SPAEALGSRGLLK   47 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~-~~~~~i~aic~-g~~~lLa~aGll~   47 (121)
                      +..++.|+.+.+.+++|+ ++++++.+||+ |-+ +|.+.|+|.
T Consensus      1095 a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366       1095 VAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred             HHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence            356678999999999999 56999999999 965 899999993

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=87.33  E-value=1.2  Score=32.28  Aligned_cols=28  Identities=18%  Similarity=-0.031  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHH
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEA   39 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~l   39 (121)
                      .+..+.+++...+.++|+.+||.|.+.+
T Consensus        70 ~~~~~~~i~~~~~~~~PvlGIClG~Q~l   97 (235)
T cd01746          70 VEGKILAIKYARENNIPFLGICLGMQLA   97 (235)
T ss_pred             hhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence            3466778899999999999999997643

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=87.05  E-value=0.59  Score=37.24  Aligned_cols=31  Identities=19%  Similarity=0.293  Sum_probs=25.9

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ++..+.+.|+++.++|.+|.++|.|-+ +|.+
T Consensus       304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~  334 (475)
T TIGR00313       304 KQSGFAEEILDFAKEGGIVIGICGGYQ-MLGK  334 (475)
T ss_pred             HhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhh
Confidence            455678889999999999999999864 7776

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=86.37  E-value=1.4  Score=32.23  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALG   41 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa   41 (121)
                      .-+|..-+.+|+.+.++++||.+||-|.+ +|.
T Consensus        90 p~RD~~E~aLi~~ALe~~iPILgICRG~Q-llN  121 (243)
T COG2071          90 PERDAFELALIRAALERGIPILGICRGLQ-LLN  121 (243)
T ss_pred             ccccHHHHHHHHHHHHcCCCEEEEccchH-HHH
Confidence            34677788999999999999999999976 454

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=86.30  E-value=1.2  Score=39.70  Aligned_cols=41  Identities=7%  Similarity=0.120  Sum_probs=33.9

Q ss_pred             hCcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHHhcC-CCCC
Q 038375            7 TNLKESEVLESIVKKQA-SDGRLNAVICASPAEALGSRG-LLKG   48 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa~aG-ll~g   48 (121)
                      ..++.|+.+.+.+++|. ++++++.+||+|-+ +|.+.| ++.+
T Consensus      1104 ~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297       1104 KSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred             HHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence            45667899999999977 78999999999855 899997 6654

>CHL00101 trpG anthranilate synthase component 2

Probab=86.17  E-value=0.73  Score=32.01  Aligned_cols=24  Identities=13%  Similarity=0.040  Sum_probs=18.1

Q ss_pred             HHHHHhCCCeEEEechhHHHHHHhc
Q 038375           19 VKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        19 l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.+..+.++|+.+||-|-+ +|+.+
T Consensus        65 i~~~~~~~~PiLGIClG~Q-lla~~   88 (190)
T CHL00101         65 VISSYAPYIPILGVCLGHQ-SIGYL   88 (190)
T ss_pred             HHHHhcCCCcEEEEchhHH-HHHHH
Confidence            3345678999999999976 67763

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=85.97  E-value=1  Score=34.65  Aligned_cols=30  Identities=17%  Similarity=0.039  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .++..+++++++.+ ++|+.+||-|-+ +|+.
T Consensus       229 ~~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~  258 (358)
T TIGR01368       229 AVEPAIETIRKLLE-KIPIFGICLGHQ-LLAL  258 (358)
T ss_pred             HHHHHHHHHHHHHc-CCCEEEECHHHH-HHHH
Confidence            34667788998887 899999999977 5665

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK07567 glutamine amidotransferase; Provisional

Probab=85.57  E-value=1.4  Score=31.92  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=20.5

Q ss_pred             HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           16 ESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .++++....+++++.+||-|-+ +|+.+
T Consensus        83 ~~~i~~~~~~~~PvLGIC~G~Q-lla~a  109 (242)
T PRK07567         83 SGLLDEVVARDFPFLGACYGVG-TLGHH  109 (242)
T ss_pred             HHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence            3455555589999999999976 77764

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=85.55  E-value=0.87  Score=31.59  Aligned_cols=30  Identities=7%  Similarity=0.141  Sum_probs=21.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.....+++. .+.++|+.+||-|-+ +|+.+
T Consensus        59 ~~~~~~~~~~-~~~~~PiLGIClG~Q-~la~a   88 (187)
T PRK08007         59 AGISLDVIRH-YAGRLPILGVCLGHQ-AMAQA   88 (187)
T ss_pred             CCccHHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            3445667776 467899999999976 67753

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=85.46  E-value=0.9  Score=35.88  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+..|... +-|+++.++|++|.++|.|-+ +|.+
T Consensus       291 ~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~  323 (433)
T PRK13896        291 ALADSPAL-DELADRAADGLPVLGECGGLM-ALAE  323 (433)
T ss_pred             HHHhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhc
Confidence            34444445 788999999999999999864 6765

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=84.93  E-value=1.7  Score=29.85  Aligned_cols=28  Identities=7%  Similarity=0.083  Sum_probs=20.2

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ....+++...+++++.+||-|-+ +|+.+
T Consensus        60 ~~~~i~~~~~~~~PvlGIC~G~Q-lla~~   87 (184)
T cd01743          60 ISLEIIRALAGKVPILGVCLGHQ-AIAEA   87 (184)
T ss_pred             hHHHHHHHHhcCCCEEEECHhHH-HHHHH
Confidence            34445555577899999999965 67764

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=84.76  E-value=1.1  Score=31.14  Aligned_cols=30  Identities=7%  Similarity=0.060  Sum_probs=21.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.....+++. .++++|+.+||-|-+ +|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lia~a   88 (193)
T PRK08857         59 AGISLQAIEH-FAGKLPILGVCLGHQ-AIAQV   88 (193)
T ss_pred             CcchHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            3344567766 578999999999976 67753

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=84.67  E-value=0.93  Score=31.41  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ....+++. .++++|+.+||-|-+ +|+.+
T Consensus        61 ~~~~~i~~-~~~~~PiLGIC~G~Q-lla~~   88 (191)
T PRK06774         61 ISLAVIRH-FADKLPILGVCLGHQ-ALGQA   88 (191)
T ss_pred             CchHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            34566665 467899999999976 67764

>PRK05670 anthranilate synthase component II; Provisional

Probab=83.91  E-value=1.5  Score=30.25  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...+++++. .+++++.+||-|-+ +|+.+
T Consensus        61 ~~~~~l~~~-~~~~PvLGIClG~Q-lla~a   88 (189)
T PRK05670         61 ISLELIREF-AGKVPILGVCLGHQ-AIGEA   88 (189)
T ss_pred             hHHHHHHHh-cCCCCEEEECHHHH-HHHHH
Confidence            456677764 56799999999976 66653

>PRK05637 anthranilate synthase component II; Provisional

Probab=83.79  E-value=1.6  Score=30.93  Aligned_cols=28  Identities=14%  Similarity=0.097  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...++++... .++||.+||-|-+ +|+.+
T Consensus        62 ~~~~li~~~~-~~~PiLGIClG~Q-lla~a   89 (208)
T PRK05637         62 NMMALIDRTL-GQIPLLGICLGFQ-ALLEH   89 (208)
T ss_pred             HHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence            3456676544 5799999999976 67764

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=83.01  E-value=2.4  Score=29.97  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             HHHHHHHhCCCeEEEechhHHHHHHhcC
Q 038375           17 SIVKKQASDGRLNAVICASPAEALGSRG   44 (121)
Q Consensus        17 ~~l~~~~~~~~~i~aic~g~~~lLa~aG   44 (121)
                      .+++...++++++.+||.|.+ +|+..+
T Consensus        68 ~~~~~~~~~~~PvlGiC~G~q-~l~~~~   94 (209)
T PRK13146         68 AVIEAVLAAGRPFLGICVGMQ-LLFERG   94 (209)
T ss_pred             HHHHHHHhCCCcEEEECHHHH-HHhhcc
Confidence            445555578999999999965 788873

>PRK00758 GMP synthase subunit A; Validated

Probab=82.83  E-value=1.5  Score=30.05  Aligned_cols=26  Identities=12%  Similarity=0.003  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .+.++++   +.++++.+||-|-+ +|+.+
T Consensus        58 ~~~~~l~---~~~~PilGIC~G~Q-~L~~a   83 (184)
T PRK00758         58 NCPEYLK---ELDVPILGICLGHQ-LIAKA   83 (184)
T ss_pred             ccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence            4555665   45899999999976 67764

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=82.59  E-value=0.97  Score=32.70  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .-.+-|++..++++++.+||.|++ +|.+
T Consensus        75 ~k~~~l~~~i~~g~p~laiCgg~Q-lLG~  102 (250)
T COG3442          75 TKKEGLKDAIENGKPVLAICGGYQ-LLGQ  102 (250)
T ss_pred             cccHHHHHHHhcCCcEEEEccchh-hccc
Confidence            445678888999999999999987 7774

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=82.44  E-value=1.1  Score=35.47  Aligned_cols=41  Identities=29%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             CCccc--hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            1 GGVPG--ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         1 gG~~g--~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ||.|.  ++.|..|+.+++.|+++.+.|++|.+=|.|- +.|.+
T Consensus       296 GGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGl-MYL~~  338 (451)
T COG1797         296 GGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGL-MYLGE  338 (451)
T ss_pred             CCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccc-eeehh
Confidence            56664  5678889999999999999999999999985 46665

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=82.18  E-value=2.2  Score=29.05  Aligned_cols=23  Identities=13%  Similarity=-0.018  Sum_probs=17.6

Q ss_pred             HHHHHhCCCeEEEechhHHHHHHh
Q 038375           19 VKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        19 l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+...+.++++.+||.|-+ +|+.
T Consensus        63 ~~~~~~~~~PilGIC~G~Q-ll~~   85 (181)
T cd01742          63 DPEIFELGVPVLGICYGMQ-LIAK   85 (181)
T ss_pred             hHHHHhcCCCEEEEcHHHH-HHHH
Confidence            3444566999999999976 6776

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=81.50  E-value=2.1  Score=32.96  Aligned_cols=30  Identities=20%  Similarity=0.092  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +.....++++++.++ +|+.+||-|-+ +|+.
T Consensus       223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~  252 (354)
T PRK12838        223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIAL  252 (354)
T ss_pred             HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHH
Confidence            345667788888876 99999999976 6664

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=81.40  E-value=2.2  Score=29.83  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=20.3

Q ss_pred             HHHHHHH-HhCCCeEEEechhHHHHHHhc
Q 038375           16 ESIVKKQ-ASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        16 ~~~l~~~-~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...|+++ .++++++.+||.|.+ +|+.+
T Consensus        62 ~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~   89 (201)
T PRK13152         62 IEALKEQVLVQKKPILGICLGMQ-LFLER   89 (201)
T ss_pred             HHHHHHHHHhCCCcEEEECHhHH-HHhhc
Confidence            4445554 578999999999976 78875

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=80.25  E-value=2  Score=36.09  Aligned_cols=31  Identities=6%  Similarity=0.036  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +....++|++..+.++|+.+||-|.+ +|+.+
T Consensus       574 d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       574 DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence            33557788888899999999999976 67764

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
3b38_A	192	Structure Of A104v Dj-1 Length = 192		2e-16
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		2e-16
3b36_A	192	Structure Of M26l Dj-1 Length = 192		6e-16
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		6e-16
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		6e-16
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		6e-16
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		6e-16
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		7e-16
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		7e-16
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		7e-16
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		7e-16
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		7e-16
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		1e-15
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		2e-15
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		2e-15
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		4e-15
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		4e-15
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		6e-15
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		6e-15
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		8e-15
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		9e-15
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		9e-15
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		1e-14
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		3e-14
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		7e-12
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		1e-09
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-09
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		3e-09
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		1e-08
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-08
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		3e-08
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		3e-08
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		1e-06
3ewn_A	253	Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM		4e-04
3mgk_A	211	Crystal Structure Of Probable ProteaseAMIDASE FROM		7e-04

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L AVICA P  AL +  +  G K T +P   ++
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ G+  + ES ++  +++ Q S G L A ICA+P   L   G+  G   T YPS   Q
Sbjct: 75  GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133
Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTF 116
           L    +   +  V +DG ++TSRGP T  EFA+ + E+L GKE+  EV+  L+V +
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY 189

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLARDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGCGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
                  T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
                  T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  +++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEH 192

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  +++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEH 192

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+ V +DG ++TSRGP T+ +FA+A+VE L GKE A +V  PLV+
Sbjct: 136 MMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A I A P  AL +  +  G K T +P   ++
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T  E+RV +DG ++TSRGP T+ +FA+A+VE L GKE A +V  PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ GA   ++S +L   VK+    GR+ A ICA+PA  L    +      T +P+  ++
Sbjct: 74  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133
Query: 61  LAPACATTVESRVPQDGKV--VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           + PA    ++ RV  D +V  +TS+GP T ++F + +++ L G+E+A EV+  LV+
Sbjct: 134 I-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 187

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GGV GA    +S  L +++   +  G+L A ICA+PA     +    G + TC+P+F + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +     +           ++TS+GP T +EFA+A +  L G E A  V+ P V+
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVL 192

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG T    L E     + +++QA+  R    +C S +  LG+ GLL+G +AT + ++ E
Sbjct: 71  IPGGTGVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAYHE 129
Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
            LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG T    L E     + +++QA+  R    +C   +  LG+ GLL+G +AT + ++ E
Sbjct: 71  IPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
            LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG T    L E     + +++QA+  R    + A+ +  LG+ GLL+G +AT + ++ E
Sbjct: 71  IPGGTGVGALMEDPQALAFIRQQAARARYVTSV-ATGSLVLGAAGLLQGKRATTHWAYHE 129
Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
            LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GGV GA    +S  L +++   +  G+L A I A+PA     +    G + TC+P+F + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +     +           ++TS+GP T +EFA+A +  L G E A  V+ P V+
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVL 192

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG T    L E     + +++QA+  R    +    +  LG+ GLL+G +AT + ++ E
Sbjct: 71  IPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
            LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 3   VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           +PG T    L E     + +++QA+  R    +    +  LG+ GLL+G +AT + ++ E
Sbjct: 71  IPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
            LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           G  P    L E  V  SI +K  S+G+  A IC  P + L S G+L+G K T YP   + 
Sbjct: 70  GRAPERVRLNEKAV--SIARKXFSEGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDD 126
Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
              A    V++ V  DG  V+SR P     +    V+ L
Sbjct: 127 XINAGVEWVDAEVVVDGNWVSSRVPADLYAWXREFVKLL 165

>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM PSEUDOMONAS Syringae Length = 253

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 40  LGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
           LG+ GLLKG KAT + S  + LA   A   E+RV +D   +T  G    ++F ++ V +L
Sbjct: 130 LGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSXVAEL 189
Query: 100 YGKERAD 106
             +  A+
Sbjct: 190 RDQTYAE 196

>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM Clostridium Acetobutylicum Atcc 824 Length = 211

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 3   VPGATNLKE---SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           VPG +  +E    +   + +     + +    +C   A  L   G+L G +AT      +
Sbjct: 71  VPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSA-LLSKAGILNGKRATTNKRSFK 129
Query: 60  QLAPACATTV---ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVS 109
            +       +   E+R  +DG + TS G    ++  +  +E L GKE+A E+S
Sbjct: 130 WVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEIS 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	5e-46
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	9e-45
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	5e-44
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	2e-42
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	1e-40
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	4e-34
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	5e-27
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	6e-27
2fex_A	188	Conserved hypothetical protein; structural genomic	9e-27
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	3e-26
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	1e-24
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	5e-22
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	1e-20
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	4e-19
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	2e-16
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	1e-17
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	8e-15
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	9e-15
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	9e-13
3gra_A	202	Transcriptional regulator, ARAC family; transcript	4e-07
1u9c_A	224	APC35852; structural genomics, protein structure i	4e-05
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	4e-04
3er6_A	209	Putative transcriptional regulator protein; struct	5e-04
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	6e-04
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	6e-04

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  146 bits (370), Expect = 5e-46
 Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ G+  + ES ++  +++ Q S G L A ICA+P   L   G+  G   T YPS   Q
Sbjct: 75  GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTF 116
           L    +   +  V +DG ++TSRGP T  EFA+ + E+L GKE+  EV+  L+V +
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY 189

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  143 bits (363), Expect = 9e-45
 Identities = 36/114 (31%), Positives = 60/114 (52%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GGV GA    +S  L +++   +  G+L A ICA+PA     +    G + TC+P+F + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDH 138

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +     +           ++TS+GP T +EFA+A++  L G E A  V+ P+V+
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVL 192

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  141 bits (358), Expect = 5e-44
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P  AL +  +  G K T +P   ++
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132

Query: 61  LAPACATT-VESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
           +      T  E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+  +++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEH 192

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  137 bits (348), Expect = 2e-42
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ GA   ++S +L   VK+    GR+ A ICA+PA  L    +      T +P+  ++
Sbjct: 74  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133

Query: 61  LAPACATTVESRVPQDGKV--VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +       ++ RV  D +V  +TS+GP T ++F + +++ L G+E+A EV+  LV+
Sbjct: 134 I--PAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 187

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  132 bits (334), Expect = 1e-40
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 1   GGVPGATNLKESEVLESIVKKQ-ASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
           GG  GA  L  +  ++ +VK+      +   +ICA           L   + T +PS   
Sbjct: 81  GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL--TAKTSGLPNKQITGHPSVRG 138

Query: 60  QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           QL       ++  V  +  ++TS+GP T M F + L+EQ+  K++ + V   L +
Sbjct: 139 QLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSM 193

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  117 bits (295), Expect = 4e-34
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
            G  G     + E   S +K   S   + + ICA     L   GLLKG K T  P     
Sbjct: 88  SGYRGIPAALQDENFMSALKLDPSRQLIGS-ICAGSF-VLHELGLLKGKKLTTNPDAKAV 145

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLV 113
           L        +  +  +G + T+ G  + +     L E+L+   +  ++   L+
Sbjct: 146 LQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLI 198

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  101 bits (253), Expect = 5e-27
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+     ++ +      V++    G+L A +C  P   L    LL+G +AT + +  + 
Sbjct: 81  GGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQ-VLIEGDLLRGKQATGFIAISKD 138

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTF 116
           +  A A  ++  +  DG ++TSR P     F  A++ +L    +   +        
Sbjct: 139 MMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDEKDRNA 194

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score = 97.2 bits (243), Expect = 6e-27
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 1   GGV-----PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYP 55
            G          N   +  L  ++K     G++    CA         G+ KG K   +P
Sbjct: 74  CGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAM-MFDFTGITKGKKVAVHP 132

Query: 56  SFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
                +    AT  + +   DG   T++   T       ++E L
Sbjct: 133 LAKPAIQNGIAT--DEKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score = 97.0 bits (242), Expect = 9e-27
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSF--- 57
           GG+        +  L  +VK+     RL A ICA+ + ALG  G+L  +  T        
Sbjct: 71  GGLSWEKGT--AADLGGLVKRFRDRDRLVAGICAAAS-ALGGTGVLNDVAHTGNALASHK 127

Query: 58  -MEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL--YGKERADEV 108
                        + R   DG VVT+ G    + FAV +++ L  +G E   E+
Sbjct: 128 AYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAEL 180

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score = 95.7 bits (239), Expect = 3e-26
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG      L+  E     V+     G+  A IC  P  +L   G+ +GLK T + S   +
Sbjct: 83  GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSLKRE 141

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
           L  A A  V+     D  VVTSR P     F   +VE+    + +   
Sbjct: 142 LTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score = 92.0 bits (229), Expect = 1e-24
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG   +  + +  +LE  + +    G + A IC +   AL + G L   K T       +
Sbjct: 82  GGTTWSEEIHQ-PILE-RIGQALKIGTIVAAICGATD-ALANMGYLDTRKHTSNNLEYTK 138

Query: 61  LA----PACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
           +                  D  +VT+ G    +EFA+ +++++
Sbjct: 139 MVCPNYKGEKFYELGPAVSDANLVTASGI-APLEFAMEVLKKI 180

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 85.1 bits (211), Expect = 5e-22
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG   +    +++ L   VK         A IC +    L   GLL     T    ++ +
Sbjct: 71  GGDSWS---NDNKKLLHFVKTAFQKNIPIAAICGAVD-FLAKNGLLNNHSHTGNFVYLWK 126

Query: 61  LA---PACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
                   ++ VE +  +D  +VT+ G    +EF   ++E +   +  + +
Sbjct: 127 DYKQYKPISSFVEKQAVRDKNLVTANGT-APIEFTNLILEMI-DFDTPENI 175

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 80.2 bits (199), Expect = 1e-20
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG      ++ +E    I ++   D +  A IC  P + L S  +LKG + T   +  + 
Sbjct: 71  GGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTSTITIRDD 128

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLY 100
           +  A A  +++ V  DG  V+SR P     +    V+ L+
Sbjct: 129 VINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLLH 168

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG      L  +  +  +VK+ +  G+  A IC      L +   + G K T Y +    
Sbjct: 97  GGR-APEYLALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPS 154

Query: 61  LAPACATTVESRVPQ----DGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT 115
           L  A A  VE   P     DG ++T+       EF    V+ L GK          +  
Sbjct: 155 LVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLCG 213

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG      L  +E + +IVK+  +  +  A IC    + L + G+LKG K T YP+    
Sbjct: 290 GGR-APEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLN 347

Query: 61  LAPACATTVESRVPQ----DGKVVTSRGPCTTMEFAVALVEQL 99
           +     T +E         DG +VT        EF   L+  L
Sbjct: 348 VVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG      L+      +  +   + G+    IC  P + L S  +++G K T     +  
Sbjct: 94  GGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIID 151

Query: 61  LAPACATTVESRVPQD-GKVVTSRGPCTTMEFAVALVEQLYG 101
           +  A A   +  V  D  ++VTSR P     F    +  L  
Sbjct: 152 VKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 66.9 bits (164), Expect = 8e-15
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 2   GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQL 61
           G  G   L E     + +++QA+  R    +  + +  LG+ GLL+G +AT + ++ E L
Sbjct: 73  GGTGVGALMEDPQALAFIRQQAARARYVTSVS-TGSLVLGAAGLLQGKRATTHWAYHELL 131

Query: 62  APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           AP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V   L  
Sbjct: 132 APLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEY 184

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 66.9 bits (164), Expect = 9e-15
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  G           + +  + +  +    +C S +  LG+ GLLKG KAT + S  + 
Sbjct: 92  GGTDGTLAAASDAETLAFMADRGARAKYITSVC-SGSLILGAAGLLKGYKATSHWSCRDA 150

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
           LA   A   E+RV +D   +T  G    ++F +++V +L  +  A+  
Sbjct: 151 LAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECA 198

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 61.0 bits (149), Expect = 9e-13
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 2   GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQL 61
           G  G       +   + +     + +    +C + +  L   G+L G +AT      + +
Sbjct: 73  GGSGTREKVNDDNFINFIGNMVKESKYIISVC-TGSALLSKAGILNGKRATTNKRSFKWV 131

Query: 62  A---PACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
                      E+R  +DG + TS G    ++  +  +E L GKE+A E+S  +  
Sbjct: 132 TEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEY 187

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 3   VPGATNLKE-SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQL 61
           V G          L+ ++   A+ G     +  + A  LG  G+L     + +P     L
Sbjct: 77  VCGGLRTPLKYPELDRLLNDCAAHGMALGGLW-NGAWFLGRAGVLDDYGCSIHPEQRASL 135

Query: 62  A---PACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI 117
           +   P       +    D   +++  P   ME  + LV +LYG   A+ V   L  +  
Sbjct: 136 SERSPQ-TRITPASFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGA 193

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 25/128 (19%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPA---EALGSRG--LLKGLKATCYP 55
           GG     +  ++E L+ ++++ A DGR+ A +C  P+    A    G  ++KG   T + 
Sbjct: 97  GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT 156

Query: 56  SFMEQLAPA--------------------CATTVESRVPQDGKVVTSRGPCTTMEFAVAL 95
              E+                                  +DG ++T + P ++   A  +
Sbjct: 157 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKV 216

Query: 96  VEQLYGKE 103
           V  L  +E
Sbjct: 217 VAALEERE 224

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 5   GATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA 64
              N       ++ V++  +  +    +C SPA  +     +  +K T        +   
Sbjct: 130 DKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKM 189

Query: 65  CATTVESRVPQ-----DGKVVTS 82
               V+    +       ++ + 
Sbjct: 190 GGVHVDCPTIKSVKDDVNRIFSC 212

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
            G P  +  K    L   +++    G     I  +    +   GLL+  KA  +  F   
Sbjct: 83  IGDPLESLDKIDPALFDWIRELHLKGSKIVAID-TGIFVVAKAGLLQQNKAVMHSYFAHL 141

Query: 61  LAPAC-ATTVESRV--PQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI 117
                    + +      DG V  S GP +     + +VE+ +GK   + +    + T  
Sbjct: 142 FGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRN-LGNQFLSTIE 200

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 31/130 (23%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCY 54
            G     +  +++ L+ I  +  ++G + A +C  PA   G         L++G   T +
Sbjct: 106 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITGF 165

Query: 55  PSFMEQLAPACAT-------TVESR------------------VPQDGKVVTSRGPCTTM 89
               E +    +        TVE                       DG++VT   P +  
Sbjct: 166 TDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAH 225

Query: 90  EFAVALVEQL 99
             AV  ++ L
Sbjct: 226 STAVRSIDAL 235

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 26/125 (20%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPA---EALGSRGLLKGLKATCYPSF 57
           GG      L ES+ + + ++    + R    +C  PA           L G     +P  
Sbjct: 153 GGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDA 212

Query: 58  MEQLAPACAT-------TVESR----------------VPQDGKVVTSRGPCTTMEFAVA 94
            ++  P                                V +D K++T   P         
Sbjct: 213 ADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKL 272

Query: 95  LVEQL 99
             +++
Sbjct: 273 AAQEM 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	99.97
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	99.97
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	99.97
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	99.97
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	99.97
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	99.96
3er6_A	209	Putative transcriptional regulator protein; struct	99.96
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.96
3gra_A	202	Transcriptional regulator, ARAC family; transcript	99.96
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	99.96
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.95
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.95
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	99.94
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.93
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	99.93
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	99.93
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.92
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.92
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.92
1u9c_A	224	APC35852; structural genomics, protein structure i	99.91
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.91
2fex_A	188	Conserved hypothetical protein; structural genomic	99.9
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.9
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.89
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.89
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.88
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.88
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.81
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.76
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.22
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.44
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.27
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.03
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	97.83
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	96.35
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	96.07
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	95.65
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	95.58
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	95.48
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	94.88
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	94.83
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	94.62
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	94.38
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	94.3
3m3p_A	250	Glutamine amido transferase; structural genomics,	94.17
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	93.79
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	93.62
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	91.71
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	91.62
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	91.02
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	88.92
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	88.81
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	88.7
2a9v_A	212	GMP synthase; structural genomics, joint center fo	86.52
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	85.76
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	85.64
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	85.06
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	83.26

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=99.97  E-value=7.6e-31  Score=182.81  Aligned_cols=113  Identities=27%  Similarity=0.370  Sum_probs=105.4

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhC-CCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASD-GRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~-~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i   79 (121)
                      ||.++++++..|+.+++||++++++ +|++++||+|+  +|+.+|+|+||++||||...+.+++.+++|+++++|+|||+
T Consensus        81 GG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~--~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~i  158 (194)
T 4gdh_A           81 GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENL  158 (194)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG--HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTE
T ss_pred             CCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc--cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCE
Confidence            6777899999999999999999865 79999999985  57888999999999999999999887889999999999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      |||+|++++++|++++|++++|++.++++++.|++|
T Consensus       159 iTs~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          159 ITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             EEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             EECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            999999999999999999999999999999999985

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=99.97  E-value=2.4e-30  Score=179.18  Aligned_cols=115  Identities=39%  Similarity=0.660  Sum_probs=105.8

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccccc-CcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVE-SRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~-~~~v~dg~i   79 (121)
                      ||.+++..+..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++ ++++++ +.+++|||+
T Consensus        75 GG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~~~v~dg~i  152 (190)
T 4e08_A           75 GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAP-TVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDKTVVKDGNL  152 (190)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSCSEEEETTE
T ss_pred             CCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCCcEEEECCE
Confidence            454567778899999999999999999999999996 69999999999999999999999977 588885 789999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI  117 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~  117 (121)
                      |||+|++++++|++++|++++|++.|+++++.|++++.
T Consensus       153 iTs~g~~a~~d~al~li~~~~g~~~a~~va~~l~~~~~  190 (190)
T 4e08_A          153 ITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAYN  190 (190)
T ss_dssp             EEECSGGGHHHHHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred             EECCChHHHHHHHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence            99999999999999999999999999999999999873

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=99.97  E-value=3e-30  Score=181.86  Aligned_cols=115  Identities=21%  Similarity=0.366  Sum_probs=105.5

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccc-cCcEEecCCeE
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTV-ESRVPQDGKVV   80 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~-~~~~v~dg~i~   80 (121)
                      .++..+..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  ++++. ++.+|+|||+|
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~-~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~ii  153 (211)
T 3mgk_A           75 SGTREKVNDDNFINFIGNMVKESKYIISVCTGS-ALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIY  153 (211)
T ss_dssp             THHHHHTTCHHHHHHHHHHHHHCSEEEECTTHH-HHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEE
T ss_pred             cchhhhcCCHHHHHHHHHHHHcCCEEEEEchHH-HHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEE
Confidence            567778889999999999999999999999986 799999999999999999999999876  34554 56899999999


Q ss_pred             cCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      ||+|+++++||++++|++++|++.|+++++.|++++.++
T Consensus       154 Ts~G~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~  192 (211)
T 3mgk_A          154 TSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNED  192 (211)
T ss_dssp             EECSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCC
T ss_pred             ECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCC
Confidence            999999999999999999999999999999999998764

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=99.97  E-value=5.1e-30  Score=185.23  Aligned_cols=118  Identities=24%  Similarity=0.293  Sum_probs=108.3

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV   80 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~   80 (121)
                      ||.+|+..+..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|+..+..++++.+|+|||+|
T Consensus        92 GG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~-~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~ii  170 (253)
T 3ewn_A           92 GGTDGTLAAASDAETLAFMADRGARAKYITSVCSGS-LILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRI  170 (253)
T ss_dssp             CBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEE
T ss_pred             CCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEE
Confidence            454377788899999999999999999999999986 7999999999999999999999997656667788999999999


Q ss_pred             cCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      ||+|+++++||+++||++++|++.|+++++.|++++++-
T Consensus       171 Ts~G~~a~idlaL~lv~~l~G~~~A~~va~~l~~~~~~p  209 (253)
T 3ewn_A          171 TGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYDPDPP  209 (253)
T ss_dssp             EECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             ECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCCCC
Confidence            999999999999999999999999999999999998753

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=99.97  E-value=6.5e-30  Score=182.41  Aligned_cols=115  Identities=29%  Similarity=0.397  Sum_probs=107.0

Q ss_pred             ccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcC
Q 038375            3 VPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTS   82 (121)
Q Consensus         3 ~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~   82 (121)
                      +.++..+..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.+..++++.+|+|||+|||
T Consensus        74 G~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~-~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs  152 (231)
T 3noq_A           74 GTGVGALMEDPQALAFIRQQAARARYVTSVSTGS-LVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTG  152 (231)
T ss_dssp             STTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEE
T ss_pred             CCChhhhccCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEEC
Confidence            3677778899999999999999999999999985 799999999999999999999999765666678899999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           83 RGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        83 ~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      +|+++++||++++|++++|++.++++++.|++++++
T Consensus       153 ~G~~a~~d~aL~li~~~~G~~~A~~va~~l~~~~~~  188 (231)
T 3noq_A          153 GGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAP  188 (231)
T ss_dssp             CSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence            999999999999999999999999999999999875

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=99.96  E-value=7.7e-29  Score=172.46  Aligned_cols=116  Identities=43%  Similarity=0.584  Sum_probs=102.9

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccc-cccccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPAC-ATTVESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g-~~~~~~~~v~dg~i   79 (121)
                      ||..++..+..++.+++||+++++++|+|++||+|+ ++|+++|+|+||++|+||...+.+++.+ +++.++.+++|||+
T Consensus        74 GG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~i  152 (197)
T 2rk3_A           74 GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLI  152 (197)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTE
T ss_pred             CCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCE
Confidence            454456678889999999999999999999999996 6999999999999999999999997643 34677899999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI  117 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~  117 (121)
                      |||+|+.++++|++++|++++|++.|+++++.|+++.-
T Consensus       153 iTs~g~~a~~d~al~li~~l~g~~~a~~va~~~~~~~~  190 (197)
T 2rk3_A          153 LTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDL  190 (197)
T ss_dssp             EEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTC---
T ss_pred             EECCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999988753

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=99.96  E-value=3.1e-29  Score=176.34  Aligned_cols=110  Identities=19%  Similarity=0.180  Sum_probs=97.5

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccC-cEEecCCeEcCCCh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVES-RVPQDGKVVTSRGP   85 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~-~~v~dg~i~T~~g~   85 (121)
                      +..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  ++++.++ .+++|||+|||+|+
T Consensus        91 ~~~~~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~  169 (209)
T 3er6_A           91 DKIDPALFDWIRELHLKGSKIVAIDTGI-FVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGP  169 (209)
T ss_dssp             GGSCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTEEEECCS
T ss_pred             ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCEEECCcH
Confidence            4679999999999999999999999986 799999999999999999999999765  4556554 69999999999999


Q ss_pred             hhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           86 CTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        86 ~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      ++++||++++|++++|++.|+++++.|++++++.
T Consensus       170 ~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~  203 (209)
T 3er6_A          170 YSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESEG  203 (209)
T ss_dssp             SCCHHHHHHHHHHHHCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhccCcccc
Confidence            9999999999999999999999999999998764

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.96  E-value=7.1e-29  Score=173.87  Aligned_cols=117  Identities=32%  Similarity=0.547  Sum_probs=106.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCe-
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKV-   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i-   79 (121)
                      ||..++.++..++.+++||+++++++|+|++||+|++++|+++|+|+||++|+||...+.+.+  +++.++++++|||+ 
T Consensus        74 GG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~--~~~~~~~vv~Dg~i~  151 (205)
T 2ab0_A           74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA--EQWLDKRVVWDARVK  151 (205)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCT--TTBCCCSEEEETTTT
T ss_pred             CCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccC--CEEecCCEEEeCCcC
Confidence            454457778889999999999999999999999996369999999999999999998887754  56788889999999 


Q ss_pred             -EcCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           80 -VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        80 -~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                       |||+|++++++|++++|+++.|.+.++++++.|++++.|.
T Consensus       152 viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l~~~~~r~  192 (205)
T 2ab0_A          152 LLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIY  192 (205)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTTSC
T ss_pred             eEECcChhhHHHHHHHHHHHhcChHHHHHHHHhcccCCCCC
Confidence             9999999999999999999999999999999999998765

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=99.96  E-value=3e-29  Score=175.64  Aligned_cols=106  Identities=20%  Similarity=0.258  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccCcEEecCCeEcCCChhhHHH
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVESRVPQDGKVVTSRGPCTTME   90 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~~~v~dg~i~T~~g~~~~~~   90 (121)
                      +.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  ++++.++.+++|||+|||+|+++++|
T Consensus        88 ~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs~G~~a~~d  166 (202)
T 3gra_A           88 PELDRLLNDCAAHGMALGGLWNGA-WFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAME  166 (202)
T ss_dssp             TTHHHHHHHHHHHTCEEEEETTHH-HHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEESSHHHHHH
T ss_pred             HHHHHHHHHHHhhCCEEEEECHHH-HHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEECCCHHHHHH
Confidence            899999999999999999999986 799999999999999999999999765  45677788999999999999999999


Q ss_pred             HHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           91 FAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        91 ~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      |++++|++++|++.|+++++.|++++.+.
T Consensus       167 lal~li~~~~G~~~A~~va~~l~~~~~~~  195 (202)
T 3gra_A          167 LMLGLVRRLYGDGLAEGVEEILSFSGARE  195 (202)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhCcCcccc
Confidence            99999999999999999999999998764

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=99.96  E-value=6.4e-29  Score=174.52  Aligned_cols=115  Identities=33%  Similarity=0.573  Sum_probs=103.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEec--CC
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQD--GK   78 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~d--g~   78 (121)
                      ||.+++..+..|+.+++||+++++++|+|++||+|++++|+++|||+||++|+||...+.+.+  .++.++++++|  ||
T Consensus        79 GG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~d~dg~  156 (208)
T 3ot1_A           79 GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPS--ERLSRQRVCYYATQH  156 (208)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCT--TTBCCSSEEEEGGGT
T ss_pred             CCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccC--CccccCcEEEeCCCC
Confidence            454567778899999999999999999999999986369999999999999999999888843  67888888875  59


Q ss_pred             eEcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375           79 VVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI  117 (121)
Q Consensus        79 i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~  117 (121)
                      +|||+|++++++|++++|++++|++.++++++.|++++.
T Consensus       157 iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l~~~~~  195 (208)
T 3ot1_A          157 LLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQ  195 (208)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCCHH
T ss_pred             EEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhheeCCC
Confidence            999999999999999999999999999999999998654

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.95  E-value=4.5e-28  Score=166.89  Aligned_cols=99  Identities=22%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV   80 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~   80 (121)
                      || .|+.++..|+.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+++.|++|+++++|+|||+|
T Consensus        77 GG-~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~-~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~li  154 (177)
T 4hcj_A           77 GG-IGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGV-VIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIV  154 (177)
T ss_dssp             CS-GGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEE
T ss_pred             CC-ccHHHHhhCHHHHHHHHHHHHhCCEEEEecccH-HHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEE
Confidence            44 678899999999999999999999999999997 6999999999999999999999998878899999999999999


Q ss_pred             cCCChhhHHHHHHHHHHHhcC
Q 038375           81 TSRGPCTTMEFAVALVEQLYG  101 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~~  101 (121)
                      |++|+.++.+|++++|+.|.+
T Consensus       155 Ts~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          155 TANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             EECSGGGHHHHHHHHHHHHHT
T ss_pred             ECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999865

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.95  E-value=2.6e-28  Score=174.71  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=104.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCC-eEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGR-LNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~-~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i   79 (121)
                      ||.+++..+..|+.+++||  ++++++ +|++||+|+ ++|+++|||+||++|+||...+.|++.+..+.++.+|+|||+
T Consensus        88 GG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~-~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~i  164 (236)
T 3bhn_A           88 SGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGS-FVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNI  164 (236)
T ss_dssp             CCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHH-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTE
T ss_pred             CCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHH-HHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCE
Confidence            3435677788899999999  556666 999999996 699999999999999999999999887777788899999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      |||+|+++++||++++|++++|++.++++++.|++++.+
T Consensus       165 iTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~~~  203 (236)
T 3bhn_A          165 ATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLIPAGQM  203 (236)
T ss_dssp             EEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTTCH
T ss_pred             EECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCCCC
Confidence            999999999999999999999999999999999999875

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=99.94  E-value=2.4e-27  Score=163.74  Aligned_cols=105  Identities=30%  Similarity=0.422  Sum_probs=94.0

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV   80 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~   80 (121)
                      ||..++..+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.+..++++++++|||+|
T Consensus        83 GG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~ii  161 (190)
T 2vrn_A           83 GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVV  161 (190)
T ss_dssp             CCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEE
T ss_pred             CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH-HHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEE
Confidence            454467777889999999999999999999999996 6999999999999999999999998877888888888899999


Q ss_pred             cCCChhhHHHHHHHHHHHh-cCHHHHH
Q 038375           81 TSRGPCTTMEFAVALVEQL-YGKERAD  106 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~-~~~~~a~  106 (121)
                      ||+|+.++.+|++++|+++ .|++.|+
T Consensus       162 Ts~g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          162 TSRKPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             ECSSGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             EcCChhhHHHHHHHHHHHHhccccccc
Confidence            9999999999999999999 8886654

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.93  E-value=1.6e-26  Score=156.83  Aligned_cols=95  Identities=25%  Similarity=0.322  Sum_probs=88.6

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~   83 (121)
                      .++..+..++.+++||+++++++|+|++||+|+ ++|+++|+|+||++|+||...+.+++.+.+++++.+++|||+|||+
T Consensus        73 ~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~  151 (168)
T 3l18_A           73 KAPEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSR  151 (168)
T ss_dssp             SHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEEC
T ss_pred             cCHHHhccCHHHHHHHHHHHHCCCEEEEECHhH-HHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcC
Confidence            467777889999999999999999999999996 6999999999999999999999998877778888999999999999


Q ss_pred             ChhhHHHHHHHHHHHh
Q 038375           84 GPCTTMEFAVALVEQL   99 (121)
Q Consensus        84 g~~~~~~~a~~li~~~   99 (121)
                      |+.++.+|++++|+.+
T Consensus       152 g~~~~~d~~l~li~~l  167 (168)
T 3l18_A          152 HPGDLYAWMREFVKLL  167 (168)
T ss_dssp             SGGGHHHHHHHHGGGC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999999876

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=99.93  E-value=5.5e-26  Score=159.99  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=96.6

Q ss_pred             CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCc-chHHhhccc--c-cccccCcEEecCCeEcCC
Q 038375            8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYP-SFMEQLAPA--C-ATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~-~~~~~l~~~--g-~~~~~~~~v~dg~i~T~~   83 (121)
                      .+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+|| .+.+.+++.  + ..+.++.+|+|||+|||+
T Consensus        87 ~~~~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~iiTs~  165 (212)
T 3efe_A           87 SEEIHQPILERIGQALKIGTIVAAICGAT-DALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTAS  165 (212)
T ss_dssp             TSGGGHHHHHHHHHHHHHTCEEEEETHHH-HHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTEEEEC
T ss_pred             ccccCHHHHHHHHHHHHCCCEEEEEcHHH-HHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCEEECC
Confidence            35789999999999999999999999986 799999999999999996 777777653  2 245678999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375           84 GPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN  119 (121)
Q Consensus        84 g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~  119 (121)
                      |++ ++||++++|+++.+. .++++++.+++.+.++
T Consensus       166 G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g~  199 (212)
T 3efe_A          166 GIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTHK  199 (212)
T ss_dssp             TTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHCC
T ss_pred             Cch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCCC
Confidence            986 899999999999997 9999999999987664

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.93  E-value=3e-26  Score=172.73  Aligned_cols=108  Identities=21%  Similarity=0.346  Sum_probs=100.2

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR   83 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~   83 (121)
                      .++..+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.++++.+..+|+|||+|||+
T Consensus        83 ~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~-~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~  161 (365)
T 3fse_A           83 MAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSR  161 (365)
T ss_dssp             THHHHHTTCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEEC
T ss_pred             cchhhccCCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECC
Confidence            467778899999999999999999999999996 7999999999999999999999998777888888999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCHHHHHHhhccc
Q 038375           84 GPCTTMEFAVALVEQLYGKERADEVSGPL  112 (121)
Q Consensus        84 g~~~~~~~a~~li~~~~~~~~a~~v~~~l  112 (121)
                      |+.++++|++++|+.+.+.+.++++++.+
T Consensus       162 G~~a~~d~al~lIe~L~g~~~A~~lA~~~  190 (365)
T 3fse_A          162 EPGDLAIFTTAILSRLGYGGKDAALPDEK  190 (365)
T ss_dssp             SGGGHHHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred             CHHHHHHHHHHHHHHhcCchHHHHHhhhh
Confidence            99999999999999999998888887654

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.92  E-value=1.4e-25  Score=153.22  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=86.5

Q ss_pred             ccchhCcc---cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCe
Q 038375            3 VPGATNLK---ESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKV   79 (121)
Q Consensus         3 ~~g~~~l~---~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i   79 (121)
                      .+++..+.   .++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++  ..+.++.+++|||+
T Consensus        78 ~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~G~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~i  154 (175)
T 3cne_A           78 VPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGITKGKKVAVHPLAKPAIQN--GIATDEKSEIDGNF  154 (175)
T ss_dssp             GGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTTTTTCEEECCGGGGGGCCS--SEEESSSEEEETTE
T ss_pred             cccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCEEEeCccHHHHhhc--CEEeCCCEEEeCCE
Confidence            34677676   78999999999999999999999996 69999999999999999999999976  67788899999999


Q ss_pred             EcCCChhhHHHHHHHHHHHh
Q 038375           80 VTSRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~   99 (121)
                      |||+|+.++++|++++|+++
T Consensus       155 iTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          155 FTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EEESSGGGGGGTHHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHh
Confidence            99999999999999999986

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.92  E-value=2.4e-25  Score=154.60  Aligned_cols=98  Identities=23%  Similarity=0.312  Sum_probs=90.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCC-e
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGK-V   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~-i   79 (121)
                      || .++..+..++.+++||+++++++++|++||+|+ ++|+++|+|+||++|+||...+.|++.+++++++++++||| +
T Consensus        94 GG-~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~i  171 (193)
T 1oi4_A           94 GG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQL  171 (193)
T ss_dssp             CB-THHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTE
T ss_pred             CC-cCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEE
Confidence            44 567777789999999999999999999999996 69999999999999999999999987788888888999999 9


Q ss_pred             EcCCChhhHHHHHHHHHHHhc
Q 038375           80 VTSRGPCTTMEFAVALVEQLY  100 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~  100 (121)
                      |||+|+.++.+|++++|+++.
T Consensus       172 iTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          172 VTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             EEESSGGGHHHHHHHHHHHHC
T ss_pred             EECCCcchHHHHHHHHHHHhh
Confidence            999999999999999999874

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.92  E-value=2e-25  Score=156.81  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=92.8

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhc---c--cccccccCcEEecCC
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLA---P--ACATTVESRVPQDGK   78 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~---~--~g~~~~~~~~v~dg~   78 (121)
                      .++..  .|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||.  +.++   .  .++++.++.+|+|||
T Consensus        73 ~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~~~~V~Dg~  147 (206)
T 3f5d_A           73 DSWSN--DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVEKQAVRDKN  147 (206)
T ss_dssp             SCCCC--CCHHHHHHHHHHHHTTCCEEEETHHH-HHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCCSSEEEETT
T ss_pred             CChhh--cCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEccCCEEEECC
Confidence            45554  89999999999999999999999986 7999999999999999984  2332   1  156778889999999


Q ss_pred             eEcCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           79 VVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        79 i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      +|||+|++ ++||++++|+.+. .+.++++++.|++.+.+
T Consensus       148 iiTs~G~a-~id~al~li~~l~-~~~a~~va~~~~~~~~g  185 (206)
T 3f5d_A          148 LVTANGTA-PIEFTNLILEMID-FDTPENIEKMMYMNRYG  185 (206)
T ss_dssp             EEEECTTC-HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHC
T ss_pred             EEECCCch-HHHHHHHHHHHhC-cchHHHHHHHhhhhhcc
Confidence            99999986 8999999999765 68999999999988753

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.91  E-value=6.9e-25  Score=154.94  Aligned_cols=102  Identities=26%  Similarity=0.416  Sum_probs=87.9

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC------CCCCCeeecCcchHH---------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCYPSFME---------------   59 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG------ll~g~~~t~~~~~~~---------------   59 (121)
                      ||.....++..++.+++||+++++++|+|++||+|+ ++|+++|      ||+||++|+||...+               
T Consensus        97 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~-~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~~~~~~~~p~~~~~  175 (224)
T 1u9c_A           97 GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGP-SGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLES  175 (224)
T ss_dssp             CCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHH
T ss_pred             CCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHH-HHHHHccccCCCceecCcEEecCCCHHHhhccccccCCccHHH
Confidence            454434568889999999999999999999999997 6999999      999999999998655               


Q ss_pred             hhcccccccccCc-----EEecCCeEcCCChhhHHHHHHHHHHHhcCHH
Q 038375           60 QLAPACATTVESR-----VPQDGKVVTSRGPCTTMEFAVALVEQLYGKE  103 (121)
Q Consensus        60 ~l~~~g~~~~~~~-----~v~dg~i~T~~g~~~~~~~a~~li~~~~~~~  103 (121)
                      .|++.++++++.+     +|+|||+|||+|++++++|++++|+++.|++
T Consensus       176 ~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          176 TLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             HHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence            3555567777665     9999999999999999999999999998863

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.91  E-value=3.8e-24  Score=153.78  Aligned_cols=103  Identities=22%  Similarity=0.298  Sum_probs=88.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc-------CCCCCCeeecCcchHH--------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-------GLLKGLKATCYPSFME--------------   59 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a-------Gll~g~~~t~~~~~~~--------------   59 (121)
                      ||.+++.++..|+.+++||+++++++|+|++||+|+ ++|+++       |+|+||++|+||...+              
T Consensus       106 GG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~-~~La~a~~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~  184 (244)
T 3kkl_A          106 AGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGP-LLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKL  184 (244)
T ss_dssp             CSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCEECCSCHHHHHHHTTHHHHHHTTC
T ss_pred             CCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhhccccCCceeCCceecCCCcHHHHhhhhhhhcccccc
Confidence            565555788899999999999999999999999998 589998       9999999999998643              


Q ss_pred             -----hhccccccccc------CcEEecCCeEcCCChhhHHHHHHHHHHHhcCHHH
Q 038375           60 -----QLAPACATTVE------SRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKER  104 (121)
Q Consensus        60 -----~l~~~g~~~~~------~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~~~~  104 (121)
                           .+++.|+.|++      +.+|+|||+||++|+.++.+|++++|+.+.+.+.
T Consensus       185 ~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~  240 (244)
T 3kkl_A          185 TTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH  240 (244)
T ss_dssp             CCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred             ccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence                 44455777876      4799999999999999999999999999998654

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.90  E-value=2.8e-24  Score=148.37  Aligned_cols=104  Identities=27%  Similarity=0.310  Sum_probs=89.2

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--cc-ccccCc-EEecCCeEcCCC
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CA-TTVESR-VPQDGKVVTSRG   84 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~-~~~~~~-~v~dg~i~T~~g   84 (121)
                      +..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||.....+++.  +. .+.++. +|+|||+||++|
T Consensus        77 ~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g  155 (188)
T 2fex_A           77 KGTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG  155 (188)
T ss_dssp             HTCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT
T ss_pred             ccccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCC
Confidence            4578999999999999999999999996 699999999999999999876666543  23 466778 999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCHHHHHHhhccccccc
Q 038375           85 PCTTMEFAVALVEQLYGKERADEVSGPLVVTF  116 (121)
Q Consensus        85 ~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~  116 (121)
                      ++ +++|++++|+++.+.+.++  ++.+.+..
T Consensus       156 ~~-~~d~al~lv~~l~~~~~~~--~~~~~~~~  184 (188)
T 2fex_A          156 SA-PVSFAVEILKSLGLFGPEA--EAELQIFA  184 (188)
T ss_dssp             TC-HHHHHHHHHHHTTCCSHHH--HHHHGGGG
T ss_pred             cc-HHHHHHHHHHHccCCCHHH--HHHHHHHH
Confidence            86 8999999999999988876  66665544

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.90  E-value=4e-24  Score=153.20  Aligned_cols=100  Identities=20%  Similarity=0.303  Sum_probs=86.5

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC-------CCCCCeeecCcchHHh-------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG-------LLKGLKATCYPSFMEQ-------------   60 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG-------ll~g~~~t~~~~~~~~-------------   60 (121)
                      ||..++.++..|+.+++||+++++++++|++||+|+ ++|+++|       ||+||++|+||...+.             
T Consensus       106 GG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~ag~~~~g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~  184 (243)
T 1rw7_A          106 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP-AIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNL  184 (243)
T ss_dssp             CSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCEECCSCHHHHHHTTCHHHHHHTTC
T ss_pred             CCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCH-HHHHhcCcccCCceeeCCcEEeecCCHHHhhcccccccccccc
Confidence            554556678889999999999999999999999997 5999999       9999999999986554             


Q ss_pred             ------hcccccccc------cCcEEecCCeEcCCChhhHHHHHHHHHHHhcC
Q 038375           61 ------LAPACATTV------ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYG  101 (121)
Q Consensus        61 ------l~~~g~~~~------~~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~  101 (121)
                            +++.|+.++      +..+|+|||+|||+|+.++++|++++|+++..
T Consensus       185 ~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          185 ATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             CCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             ccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence                  444467777      66799999999999999999999999998753

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.89  E-value=2.7e-23  Score=152.62  Aligned_cols=102  Identities=21%  Similarity=0.373  Sum_probs=88.2

Q ss_pred             CCccchh-CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc----CCCCCCeeecCcchHHhhcc------------
Q 038375            1 GGVPGAT-NLKESEVLESIVKKQASDGRLNAVICASPAEALGSR----GLLKGLKATCYPSFMEQLAP------------   63 (121)
Q Consensus         1 gG~~g~~-~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a----Gll~g~~~t~~~~~~~~l~~------------   63 (121)
                      || .|+. .+..|+.+++||+++++++++|++||+|+ ++|+++    |||+||++|+||...+.++.            
T Consensus       153 GG-~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp-~~La~a~~~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~  230 (291)
T 1n57_A          153 GG-HGALIGLPESQDVAAALQWAIKNDRFVISLCHGP-AAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWY  230 (291)
T ss_dssp             CS-GGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSC
T ss_pred             CC-cchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH-HHHHhhcccCccCCCCEEEeCCCHHHhhhccccccccccchh
Confidence            44 5555 78899999999999999999999999997 477777    59999999999998877632            


Q ss_pred             -------cccccc----cCcEEecCCeEcCCChhhHHHHHHHHHHHhcCHHH
Q 038375           64 -------ACATTV----ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKER  104 (121)
Q Consensus        64 -------~g~~~~----~~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~~~~  104 (121)
                             .|+.++    +..+|+|||+|||+|+.++++|++++|+.+.+.+.
T Consensus       231 le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          231 FGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             HHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence                   256777    67899999999999999999999999999998654

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.89  E-value=3.3e-23  Score=149.11  Aligned_cols=101  Identities=21%  Similarity=0.281  Sum_probs=86.5

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc------CCCCCCeeecCcchHHh--------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR------GLLKGLKATCYPSFMEQ--------------   60 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a------Gll~g~~~t~~~~~~~~--------------   60 (121)
                      ||...+.++..++.+++||+++++++|+|++||+|+ ++|+++      |+|+||++|+||...+.              
T Consensus       113 GG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp-~~La~a~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~  191 (247)
T 3n7t_A          113 GGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGP-AMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLH  191 (247)
T ss_dssp             CSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGCBCTTSSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCC
T ss_pred             CCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHhhcccCCccccCceecCCCcHHHhhhhhhhhccccchh
Confidence            554323678899999999999999999999999998 589998      99999999999987543              


Q ss_pred             -----hccccccccc------CcEEecCCeEcCCChhhHHHHHHHHHHHhcCH
Q 038375           61 -----LAPACATTVE------SRVPQDGKVVTSRGPCTTMEFAVALVEQLYGK  102 (121)
Q Consensus        61 -----l~~~g~~~~~------~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~~  102 (121)
                           +++.|+.|++      ..+|+|||+||++|+.++.+|++++|+.+...
T Consensus       192 ~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          192 TIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             CHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence                 4445777776      47999999999999999999999999998653

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.88  E-value=6e-23  Score=155.76  Aligned_cols=99  Identities=26%  Similarity=0.285  Sum_probs=90.5

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccC----cEEecCCe
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVES----RVPQDGKV   79 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~----~~v~dg~i   79 (121)
                      .++..+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.|+++++.    .+++|||+
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~i  177 (396)
T 3uk7_A           99 RAPEYLALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSL  177 (396)
T ss_dssp             SHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTE
T ss_pred             cchhhcccCHHHHHHHHHHHHcCCEEEEECchH-HHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcceEecCCE
Confidence            456778889999999999999999999999996 6999999999999999999999998767777653    48999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHH
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKE  103 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~  103 (121)
                      |||+|+.++++|++++|+++.|++
T Consensus       178 iT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          178 ITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             EEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             EEecCcccHHHHHHHHHHHHhccc
Confidence            999999999999999999999975

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.88  E-value=1.7e-22  Score=153.27  Aligned_cols=98  Identities=29%  Similarity=0.321  Sum_probs=89.8

Q ss_pred             cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccC----cEEecCCe
Q 038375            4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVES----RVPQDGKV   79 (121)
Q Consensus         4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~----~~v~dg~i   79 (121)
                      .++..+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.++..++++++.    ++|+|||+
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~i  370 (396)
T 3uk7_A          292 RAPEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNL  370 (396)
T ss_dssp             SHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGH-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTE
T ss_pred             cchhhhccCHHHHHHHHHHHHCCCEEEEEchHH-HHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCE
Confidence            467778889999999999999999999999996 6999999999999999999998887667888875    59999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCH
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGK  102 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~  102 (121)
                      |||+|+.+..+|++++|+++.+.
T Consensus       371 iTs~g~~~~~d~~l~li~~l~~~  393 (396)
T 3uk7_A          371 VTGAAWPGHPEFVSQLMALLGIQ  393 (396)
T ss_dssp             EEESSGGGHHHHHHHHHHHHTCE
T ss_pred             EECCCchhHHHHHHHHHHHhccc
Confidence            99999999999999999999874

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.81  E-value=5.2e-21  Score=136.11  Aligned_cols=100  Identities=22%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCC-CCeeecC-c-chHHhhcccccccccC---cEEec--CCeEc
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLK-GLKATCY-P-SFMEQLAPACATTVES---RVPQD--GKVVT   81 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~-g~~~t~~-~-~~~~~l~~~g~~~~~~---~~v~d--g~i~T   81 (121)
                      +.|+.+++||+++++++++|++||+|+ ++|+++  |+ ||++|+| | ...+.|++.|+.+++.   .+++|  ||+||
T Consensus       117 ~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~a--L~~Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liT  193 (232)
T 1vhq_A          117 TVDRELKALAQAMHQAGKPLGFMCIAP-AMLPKI--FDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVT  193 (232)
T ss_dssp             CBCHHHHHHHHHHHHTTCCEEEETTGG-GGHHHH--CSSCCEECCCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEE
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHH--hcCCCEEeccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEE
Confidence            358999999999999999999999997 589998  78 9999999 5 6778887767777763   55555  99999


Q ss_pred             CCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           82 SRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        82 ~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      |+    +++|++++|++++|.+.+  +++.+.+.+++
T Consensus       194 s~----~~d~al~lv~~~~G~~~~--~~~~~~~~~~~  224 (232)
T 1vhq_A          194 TP----AYMLAQNIAEAASGIDKL--VSRVLVLAEEG  224 (232)
T ss_dssp             EC----GGGTCSSHHHHHHHHHHH--HHHHHHHHC--
T ss_pred             CC----CHHHHHHHHHHHcCHHHH--HHHHHHhhhcc
Confidence            97    788999999999998753  55556665554

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.76  E-value=3.6e-19  Score=127.69  Aligned_cols=89  Identities=11%  Similarity=0.069  Sum_probs=71.3

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC-CCCCCeeecCcchHHhhccccccccc---CcEEec--CCeEcC
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRG-LLKGLKATCYPSFMEQLAPACATTVE---SRVPQD--GKVVTS   82 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG-ll~g~~~t~~~~~~~~l~~~g~~~~~---~~~v~d--g~i~T~   82 (121)
                      +..|+.+++||+++++++|+|++||+|+ ++|+++| ||+||++|+||...+.+++.|+.|++   +++|+|  ||+||+
T Consensus       134 ~~~~~~l~~~lr~~~~~gk~IaaIC~G~-~~La~ag~lL~Gr~~T~~~~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs  212 (242)
T 3l3b_A          134 DYILPEFKNAVREFYNAKKPIGAVCISP-AVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC  212 (242)
T ss_dssp             CCBCHHHHHHHHHHHHTTCCEEEETTHH-HHHHHHHTTTCCCEECCCC----CHHHHTCEECCCCTTCCEEETTTTEEEE
T ss_pred             ccCCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhCcccCCCEEEecCChHHHHHHCCCEEEcCCCCeEEEECCCCEEEC
Confidence            3568999999999999999999999997 6999999 99999999999887778777888887   579999  999999


Q ss_pred             CChhhHHHHHHHHHHHhcCH
Q 038375           83 RGPCTTMEFAVALVEQLYGK  102 (121)
Q Consensus        83 ~g~~~~~~~a~~li~~~~~~  102 (121)
                      +++..    +..+.|.+.|.
T Consensus       213 ~a~~~----~~~~~e~~~g~  228 (242)
T 3l3b_A          213 SAYMR----NDSLYNVYLGI  228 (242)
T ss_dssp             CGGGS----CCCHHHHHHHH
T ss_pred             cCccc----CCCHHHHHhCH
Confidence            98742    33444444443

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.22  E-value=7.3e-12  Score=101.09  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=67.5

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc-CCCCCCeeecCcchHHhhcccccccccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-GLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a-Gll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i   79 (121)
                      ||..++..+..++.+++||+++++++|+|++||+|+ ++|+++ ||.             .++..|.    +.+|+|+++
T Consensus       603 GG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~-~lLA~AlGL~-------------~L~~aGa----~~VVvDg~l  664 (715)
T 1sy7_A          603 GGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALP-------------QVTVSSE----AEVHESYGV  664 (715)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCT-------------TSCCCCS----SSCEEETTE
T ss_pred             CCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHH-HHHHHccCcH-------------hHHhcCC----CcEEEeCCE
Confidence            454567778889999999999999999999999986 699999 983             2333332    679999999


Q ss_pred             EcCCChh------------hHHHHHHHHHHHhcC
Q 038375           80 VTSRGPC------------TTMEFAVALVEQLYG  101 (121)
Q Consensus        80 ~T~~g~~------------~~~~~a~~li~~~~~  101 (121)
                      ||++|+.            +..+|+..+++.+..
T Consensus       665 ITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          665 VTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             EEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             EECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence            9999985            567788888887764

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.44  E-value=3e-07  Score=73.97  Aligned_cols=41  Identities=17%  Similarity=0.102  Sum_probs=38.1

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCC
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLK   47 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~   47 (121)
                      ++.|..++.+++||+++++.+|+|++||+|++ +|..+|+..
T Consensus       612 ~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~  652 (688)
T 2iuf_A          612 ASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISS  652 (688)
T ss_dssp             CCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCT
T ss_pred             hhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCC
Confidence            78899999999999999999999999999986 899999853

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.27  E-value=7.3e-07  Score=72.21  Aligned_cols=41  Identities=2%  Similarity=-0.055  Sum_probs=38.5

Q ss_pred             chhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCC
Q 038375            5 GATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLL   46 (121)
Q Consensus         5 g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll   46 (121)
                      +++.|+.|+.+++||+++++++|+|++||+|+ ++|+++|+-
T Consensus       671 g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp-~lLa~AGL~  711 (753)
T 3ttv_A          671 NIADIADNGDANYYLMEAYKHLKPIALAGDAR-KFKATIKIA  711 (753)
T ss_dssp             CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGG-GGGGGGTCC
T ss_pred             ChHHhhhCHHHHHHHHHHHhcCCeEEEECchH-HHHHHcCCC
Confidence            78999999999999999999999999999998 599999984

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.03  E-value=4.6e-06  Score=67.08  Aligned_cols=40  Identities=20%  Similarity=0.125  Sum_probs=36.8

Q ss_pred             hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCC
Q 038375            6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLL   46 (121)
Q Consensus         6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll   46 (121)
                      ++.|+.++.++.|++++++.+|+|++||+|++ +|..+|+-
T Consensus       610 ~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-lL~~AGI~  649 (688)
T 3ej6_A          610 MSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-ALQSIGVE  649 (688)
T ss_dssp             CCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-HHHHTTCC
T ss_pred             hhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-HHHHcCCC
Confidence            37899999999999999999999999999985 89999984

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=97.83  E-value=6.4e-06  Score=56.79  Aligned_cols=38  Identities=34%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCC
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGL   49 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~   49 (121)
                      .++.+.++|+++.+++++|.+||.|. .+|+.+|+|+|+
T Consensus        64 ~~~~~~~~l~~~~~~~~pilgIC~G~-qlLa~aGll~g~  101 (213)
T 3d54_D           64 AREKIAFEIAKAAERGKLIMGICNGF-QILIEMGLLKGA  101 (213)
T ss_dssp             HTSTTHHHHHHHHHHTCEEEECHHHH-HHHHHHTSSCSE
T ss_pred             ccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCC
Confidence            46778999999999999999999986 589999999874

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=96.35  E-value=0.0011  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +.++..+.++|+++.++++++.+||.|.+ +|+.
T Consensus        55 ~~~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~   87 (196)
T 2nv0_A           55 LIDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAK   87 (196)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSB
T ss_pred             HhhhHHHHHHHHHHHHCCCcEEEECHHHH-HHHH
Confidence            33345568899999999999999999976 7775

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=96.07  E-value=0.0016  Score=45.13  Aligned_cols=33  Identities=24%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375            9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus         9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +.++..+.++|+++.+++++|.+||.|.+ +|+.
T Consensus        77 ~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~  109 (219)
T 1q7r_A           77 LIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAK  109 (219)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEE
T ss_pred             HhhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence            33345567899999999999999999976 7776

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=95.65  E-value=0.0031  Score=43.32  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +..+.++|+++.++++++.+||.|.+ +|+.+
T Consensus        77 ~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~  107 (208)
T 2iss_D           77 EMDMDEKLVERINNGLPVFATCAGVI-LLAKR  107 (208)
T ss_dssp             HTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred             hhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence            44467899999999999999999976 67763

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=95.58  E-value=0.021  Score=39.92  Aligned_cols=30  Identities=13%  Similarity=0.333  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ....++|+++.++++++.+||-|.+ +|+.+
T Consensus        71 ~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~  100 (236)
T 3l7n_A           71 QAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA  100 (236)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence            4478999999999999999999976 67763

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.48  E-value=0.0051  Score=41.33  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=27.4

Q ss_pred             hCcccCHHHHHHHHHHHhCC-CeEEEechhHHHHHHhc
Q 038375            7 TNLKESEVLESIVKKQASDG-RLNAVICASPAEALGSR   43 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~~~~-~~i~aic~g~~~lLa~a   43 (121)
                      +.+..+..+.++|+++.+++ ++|.+||.|.+ +|+.+
T Consensus        54 ~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~   90 (191)
T 2ywd_A           54 GKLAREYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE   90 (191)
T ss_dssp             HHHHHHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred             HHhhhhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence            33333456788999999999 99999999965 67763

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=94.88  E-value=0.02  Score=39.66  Aligned_cols=30  Identities=13%  Similarity=0.017  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhC-CCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASD-GRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~-~~~i~aic~g~~~lLa~a   43 (121)
                      ..+.++|+++.++ +++|.+||.|.+ +|+.+
T Consensus        66 ~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           66 DTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            5688999999999 999999999965 77763

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=94.83  E-value=0.035  Score=47.89  Aligned_cols=40  Identities=10%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             cccCHHHHHHHHHHH-hCCCeEEEechhHHHHHHhc-CCCCCC
Q 038375            9 LKESEVLESIVKKQA-SDGRLNAVICASPAEALGSR-GLLKGL   49 (121)
Q Consensus         9 l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa~a-Gll~g~   49 (121)
                      .+.++.+.+.++++. ++++++.+||+|.+ +|.++ |||.|.
T Consensus      1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp             HHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred             HHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence            456788888899865 68999999999976 88888 999886

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=94.62  E-value=0.024  Score=38.09  Aligned_cols=30  Identities=10%  Similarity=0.063  Sum_probs=24.2

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ...+.++++++.++++++.+||.|.+ +|+.
T Consensus        58 ~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~   87 (189)
T 1wl8_A           58 TGNCEKVLEHYDEFNVPILGICLGHQ-LIAK   87 (189)
T ss_dssp             CTTHHHHHHTGGGTCSCEEEETHHHH-HHHH
T ss_pred             hhhHHHHHHHHhhCCCeEEEEcHHHH-HHHH
Confidence            34567888877788999999999976 6665

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=94.38  E-value=0.036  Score=38.87  Aligned_cols=30  Identities=10%  Similarity=0.037  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+.++|+++.++++|+.+||-|.+ +|+.+
T Consensus        80 ~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           80 KYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence            3678899999889999999999976 67653

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=94.30  E-value=0.029  Score=37.99  Aligned_cols=28  Identities=18%  Similarity=0.200  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...++++++ +.++++.+||-|.+ +|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence            456888875 78999999999976 67763

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=94.17  E-value=0.047  Score=38.76  Aligned_cols=30  Identities=10%  Similarity=0.121  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..++++|+++.+.++++.+||.|.+ +|+.+
T Consensus        69 ~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~   98 (250)
T 3m3p_A           69 PTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA   98 (250)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            5678899999999999999999976 67764

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=93.79  E-value=0.02  Score=38.82  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+.++|+++.++++|+.+||.|.+ +|+.+
T Consensus        62 ~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   91 (200)
T 1ka9_H           62 SGFVERVRRHLERGLPFLGICVGMQ-VLYEG   91 (200)
T ss_dssp             SCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             cCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence            5578899999999999999999975 78887

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=93.62  E-value=0.087  Score=38.05  Aligned_cols=29  Identities=0%  Similarity=-0.365  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +.+.++++++.++++|+.+||.|.+ +|+.
T Consensus       106 ~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A          106 LGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            5688999999999999999999976 6665

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=91.71  E-value=0.15  Score=35.92  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=26.3

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +|...+++|+++.++++++.+||-|-+ +|+.+
T Consensus        93 rd~~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           93 RDSYEIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            345578999999999999999999975 67754

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=91.62  E-value=0.089  Score=35.50  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.++|+++.++++++.+||.|.+ +|+.+
T Consensus        66 ~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   93 (201)
T 1gpw_B           66 LIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (201)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHH-TTSSE
T ss_pred             HHHHHHHHHHcCCeEEEEChhHH-HHHHh
Confidence            67899999899999999999965 77765

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=91.02  E-value=0.25  Score=37.17  Aligned_cols=31  Identities=13%  Similarity=0.050  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+...+++|+++.++++|+.+||-|-+ +|+.
T Consensus       246 ~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~  276 (379)
T 1a9x_B          246 PCDYAITAIQKFLETDIPVFGICLGHQ-LLAL  276 (379)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECchHH-HHHH
Confidence            357788999999998999999999976 6775

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=88.92  E-value=0.36  Score=34.43  Aligned_cols=29  Identities=0%  Similarity=-0.267  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +..+.+++.+.++++|+.+||-|.+ +|+.
T Consensus        83 ~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~  111 (273)
T 2w7t_A           83 DGKCAAAQVARMNNIPYFGVXLGMQ-VAVI  111 (273)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             hhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            4577889998888999999999976 5654

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=88.81  E-value=0.1  Score=35.44  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           16 ESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..+++...+.++|+.+||-|-+ +|+.+
T Consensus        62 ~~~i~~~~~~~~PvlGIClG~Q-lL~~~   88 (211)
T 4gud_A           62 RDLIELVKRVEKPLLGICLGMQ-LLGKL   88 (211)
T ss_dssp             TTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred             cChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence            3456777788999999999965 67653

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=88.70  E-value=0.19  Score=34.49  Aligned_cols=31  Identities=10%  Similarity=0.142  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +...+.+.|++..++|+++.++|.|.+ ++..
T Consensus        98 ~~~gl~~~l~~~~~~G~p~~G~sAGa~-~l~~  128 (206)
T 3l4e_A           98 KRTGADKLILEEIAAGKLYIGESAGAV-ITSP  128 (206)
T ss_dssp             HHHTHHHHHHHHHHTTCEEEEETHHHH-TTSS
T ss_pred             HHCChHHHHHHHHHcCCeEEEECHHHH-Hhcc
Confidence            456788899999999999999999853 5543

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=86.52  E-value=0.63  Score=31.76  Aligned_cols=27  Identities=7%  Similarity=0.087  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           13 EVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.+.+++   .++++++.+||-|.+ +|+.+
T Consensus        75 ~~l~~~~---~~~~~PiLGIC~G~Q-ll~~~  101 (212)
T 2a9v_A           75 GSVGKYI---DDHNYPILGICVGAQ-FIALH  101 (212)
T ss_dssp             HHHHHHH---HHCCSCEEEETHHHH-HHHHH
T ss_pred             hhHHHHH---HhCCCCEEEEChHHH-HHHHH
Confidence            4444444   478999999999976 66653

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=85.76  E-value=0.25  Score=34.33  Aligned_cols=31  Identities=13%  Similarity=0.038  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ++..+.+.|+++.++|+++.++|.|. .+|+.
T Consensus        98 ~~~gl~~~l~~~~~~G~p~~G~sAG~-~~l~~  128 (229)
T 1fy2_A           98 RERGLLAPMADRVKRGALYIGWSAGA-NLACP  128 (229)
T ss_dssp             HHTTCHHHHHHHHHTTCEEEEETHHH-HHTSS
T ss_pred             HHCChHHHHHHHHHcCCEEEEECHHH-Hhhcc
Confidence            34467788998889999999999985 46665

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=85.64  E-value=0.32  Score=32.29  Aligned_cols=25  Identities=20%  Similarity=0.126  Sum_probs=19.3

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      +.++++   ++++|+.+||.|.+ +|+.+
T Consensus        60 ~~~~i~---~~~~PilGIC~G~Q-ll~~~   84 (186)
T 2ywj_A           60 LLEKIK---NSNLPILGTCAGMV-LLSKG   84 (186)
T ss_dssp             HHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred             HHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence            445555   78899999999975 77765

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=85.06  E-value=0.78  Score=30.61  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=19.3

Q ss_pred             HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           15 LESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...+++. .++++|+.+||-|-+ +|+.+
T Consensus        66 ~~~l~~~-~~~~~PilGIC~G~Q-ll~~~   92 (192)
T 1i1q_B           66 MPELLTR-LRGKLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             HHHHHHH-HBTTBCEEEETHHHH-HHHHH
T ss_pred             HHHHHHH-HhcCCCEEEECcChH-HHHHH
Confidence            3444543 568899999999976 67753

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=83.26  E-value=1  Score=32.70  Aligned_cols=28  Identities=14%  Similarity=0.100  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhCC--CeEEEechhHHHHHHh
Q 038375           14 VLESIVKKQASDG--RLNAVICASPAEALGS   42 (121)
Q Consensus        14 ~l~~~l~~~~~~~--~~i~aic~g~~~lLa~   42 (121)
                      .++++++++.+++  +||.+||-|-+ +|+.
T Consensus       110 ~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~  139 (315)
T 1l9x_A          110 IFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL  139 (315)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence            4667777776554  99999999976 5654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	1e-19
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	3e-17
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	1e-16
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	5e-15
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	1e-14
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	6e-14
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-13
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	5e-11
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	8e-10
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	2e-07

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 77.9 bits (191), Expect = 1e-19
 Identities = 34/114 (29%), Positives = 60/114 (52%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG+ GA   ++S +L   VK+    GR+ A ICA+PA  L    +      T +P+  ++
Sbjct: 73  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 132

Query: 61  LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +                K++TS+GP T ++F + +++ L G+E+A EV+  LV+
Sbjct: 133 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 186

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 70.6 bits (172), Expect = 3e-17
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 2   GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQL 61
           G      ++ +E   SI +K  S+G+  A IC  P     S G+L+G K T YP   + +
Sbjct: 69  GGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQIL-ISAGVLRGRKGTSYPGIKDDM 127

Query: 62  APACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
             A    V++ V  DG  V+SR P     +    V+ L
Sbjct: 128 INAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 1e-16
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
           GG  GA NL ES  ++ I+K+Q +   L A ICA P   L +  +  G K T +P   ++
Sbjct: 72  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDK 130

Query: 61  LAPACATTVESRVP-QDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
           +      T       +DG ++TSRGP T+ EFA+A+VE L GKE A +V  PLV+
Sbjct: 131 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 185

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 65.3 bits (158), Expect = 5e-15
 Identities = 7/79 (8%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 19  VKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGK 78
           +++     +       +    +     L  +  +      E         V+     D  
Sbjct: 90  IREAFGHLKAIGATGEAVD-LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAV 148

Query: 79  VVTSRGPCTTMEFAVALVE 97
            +         EF  A+ +
Sbjct: 149 KIAKGAAGFLGEFFYAIAQ 167

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 64.9 bits (157), Expect = 1e-14
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 25/128 (19%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPA-----EALGSRGLLKGLKATCYP 55
           GG     +  ++E L+ ++++ A DGR+ A +C  P+            ++KG   T + 
Sbjct: 94  GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT 153

Query: 56  SFMEQLAPA--------------------CATTVESRVPQDGKVVTSRGPCTTMEFAVAL 95
              E+                                  +DG ++T + P ++   A  +
Sbjct: 154 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKV 213

Query: 96  VEQLYGKE 103
           V  L  +E
Sbjct: 214 VAALEERE 221

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 62.8 bits (152), Expect = 6e-14
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 13  EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPS----FMEQLAPACATT 68
             L  +VK+     RL A ICA+ + ALG  G+L  +  T                    
Sbjct: 81  ADLGGLVKRFRDRDRLVAGICAAAS-ALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYR 139

Query: 69  VESRVPQDGKVVTSRGPCTTMEFAVALVEQL--YGKERADEV 108
            + R   DG VVT+ G    + FAV +++ L  +G E   E+
Sbjct: 140 DQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAEL 180

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (148), Expect = 1e-13
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
            G      L+      +  +   + G+    IC  P   L S  +++G K T     +  
Sbjct: 71  PGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQL-LISADVIRGRKLTAVKPIIID 129

Query: 61  LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
           +  A A    +  V    ++VTSR P     F    +  L
Sbjct: 130 VKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 169

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 55.9 bits (134), Expect = 5e-11
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 26/125 (20%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPA---EALGSRGLLKGLKATCYPSF 57
           GG      L ES+ + + ++    + R    +C  PA           L G     +P  
Sbjct: 149 GGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDA 208

Query: 58  ME-------------------QLAPACATTVE----SRVPQDGKVVTSRGPCTTMEFAVA 94
            +                   +L       +      RV +D K++T   P         
Sbjct: 209 ADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKL 268

Query: 95  LVEQL 99
             +++
Sbjct: 269 AAQEM 273

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 31/130 (23%)

Query: 1   GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALG------SRGLLKGLKATCY 54
            G     +  +++ L+ I  +  ++G + A +C  PA   G       R L++G   T +
Sbjct: 105 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGF 164

Query: 55  PSFMEQLAP-------------------ACATTVE------SRVPQDGKVVTSRGPCTTM 89
               E +                       A  +            DG++VT   P +  
Sbjct: 165 TDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAH 224

Query: 90  EFAVALVEQL 99
             AV  ++ L
Sbjct: 225 STAVRSIDAL 234

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 8   NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACAT 67
                  L+++ +     G+    +C +PA           L         E L    A 
Sbjct: 110 ECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAE 169

Query: 68  TV-----ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERA 105
            V     +  V +D K+VT+  P      A  + E   G ++ 
Sbjct: 170 HVPCPVDDIVVDEDNKIVTT--PA--YMLAQNIAEAASGIDKL 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.96
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.94
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.91
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.88
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.87
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.85
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.85
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.82
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.56
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.66
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	94.74
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	93.8
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	93.19
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	92.34
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	92.31
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	92.03
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	89.18
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	87.16
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	86.73
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	86.35
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	85.44
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	84.17

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5e-30  Score=177.32  Aligned_cols=116  Identities=31%  Similarity=0.552  Sum_probs=106.4

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCC--
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGK--   78 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~--   78 (121)
                      ||..+++.+..|+.+++|||++.+++|+|+++|+||+++|+++|||+|+++|+||...+.+.  +..++++++++|||  
T Consensus        73 GG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~--~~~~~~~~vv~Dgn~~  150 (195)
T d2ab0a1          73 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDKRVVWDARVK  150 (195)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCCSEEEETTTT
T ss_pred             cccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcc--cceEeecceEEECCCe
Confidence            56566888889999999999999999999999999778999999999999999999888774  37788999999986  


Q ss_pred             eEcCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375           79 VVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID  118 (121)
Q Consensus        79 i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~  118 (121)
                      +|||+|++++++|++++|++++|++.++++++.|++++..
T Consensus       151 liTa~g~~a~~d~al~lie~l~g~e~A~~va~~l~~~~~~  190 (195)
T d2ab0a1         151 LLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGI  190 (195)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTTS
T ss_pred             EEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcch
Confidence            6999999999999999999999999999999999998864

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.6e-30  Score=175.09  Aligned_cols=114  Identities=44%  Similarity=0.603  Sum_probs=104.2

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccc-ccccCcEEecCCe
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACA-TTVESRVPQDGKV   79 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~-~~~~~~~v~dg~i   79 (121)
                      ||..+++.+..++.+++|||++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+. .+.++.+++|||+
T Consensus        72 GG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~i  150 (186)
T d1p5fa_          72 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLI  150 (186)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTE
T ss_pred             cCccccccccchHHHHHHHHHhhccccceeecccCc-chhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCE
Confidence            555568888899999999999999999999999996 69999999999999999999999987654 3467789999999


Q ss_pred             EcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375           80 VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT  115 (121)
Q Consensus        80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~  115 (121)
                      |||+|++++++|++++|+++.|++.++++++.|++.
T Consensus       151 iT~~g~~~~~d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         151 LTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             EEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             EECCCccHHHHHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999863

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=3.3e-27  Score=158.84  Aligned_cols=97  Identities=32%  Similarity=0.463  Sum_probs=90.7

Q ss_pred             CccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEc
Q 038375            2 GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVT   81 (121)
Q Consensus         2 G~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T   81 (121)
                      |+.++..+..|+.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.+.+++++++|+|||+||
T Consensus        69 Gg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiT  147 (166)
T d1g2ia_          69 GGRAPERVRLNEKAVSIARKMFSEGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVS  147 (166)
T ss_dssp             CBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTT-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEE
T ss_pred             cccchhhhccChHHHHHHHHHHhcCCeeeeccccc-hhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEE
Confidence            44677778889999999999999999999999996 69999999999999999999999988888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHh
Q 038375           82 SRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        82 ~~g~~~~~~~a~~li~~~   99 (121)
                      |+|+.++.+|++++|+.|
T Consensus       148 s~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_         148 SRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             ECSGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999999986

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.1e-24  Score=144.87  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=88.2

Q ss_pred             CccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEE-ecCCeE
Q 038375            2 GVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVP-QDGKVV   80 (121)
Q Consensus         2 G~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v-~dg~i~   80 (121)
                      |+.++..+..|+++++||+++++++|+|++||+|+ ++|+++|+|+||++|+||...+.+++.|+++.++++| .|+|+|
T Consensus        72 GG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~-~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~li  150 (170)
T d1oi4a1          72 GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLV  150 (170)
T ss_dssp             CBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEE
T ss_pred             cchhhhhhccChHHHHHHHHHhhcCCeeeecccch-HHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEE
Confidence            33677888899999999999999999999999997 5999999999999999999999998888899887755 468899


Q ss_pred             cCCChhhHHHHHHHHHHHh
Q 038375           81 TSRGPCTTMEFAVALVEQL   99 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~   99 (121)
                      |++|+.++.+|++++|+.|
T Consensus       151 Ts~g~~~~~~fa~~~i~~L  169 (170)
T d1oi4a1         151 TSRTPDDLPAFNREALRLL  169 (170)
T ss_dssp             EESSGGGHHHHHHHHHHHH
T ss_pred             ECCChhhHHHHHHHHHHHh
Confidence            9999999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.88  E-value=7.2e-23  Score=140.27  Aligned_cols=98  Identities=31%  Similarity=0.436  Sum_probs=80.7

Q ss_pred             ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcc-hHHhhccc--cccccc-CcEEecCCeEcCCCh
Q 038375           10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPS-FMEQLAPA--CATTVE-SRVPQDGKVVTSRGP   85 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~-~~~~l~~~--g~~~~~-~~~v~dg~i~T~~g~   85 (121)
                      ..++.+++|||++++++++|+++|+|+ ++|+++|+|+|+++|+|+. ..+.+...  +..+.+ +.+|+|||+|||+|+
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G~  156 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchh-HHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCCc
Confidence            457889999999999999999999996 6999999999999999965 33334332  344554 458899999999984


Q ss_pred             hhHHHHHHHHHHHh--cCHHHHHHhh
Q 038375           86 CTTMEFAVALVEQL--YGKERADEVS  109 (121)
Q Consensus        86 ~~~~~~a~~li~~~--~~~~~a~~v~  109 (121)
                       ++++|+++++++|  ++++.++++.
T Consensus       157 -aa~d~al~ii~~L~~~~~e~~~~~~  181 (188)
T d2fexa1         157 -APVSFAVEILKSLGLFGPEAEAELQ  181 (188)
T ss_dssp             -CHHHHHHHHHHHTTCCSHHHHHHHG
T ss_pred             -hHHHHHHHHHHHhcccCHHHHHHHH
Confidence             6899999999997  6888888774

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=2e-22  Score=141.21  Aligned_cols=101  Identities=25%  Similarity=0.391  Sum_probs=86.9

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc------CCCCCCeeecCcch---------------HH
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR------GLLKGLKATCYPSF---------------ME   59 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a------Gll~g~~~t~~~~~---------------~~   59 (121)
                      ||.+++.++..|+.++++++++++++|+|++|||||+ +|..+      ++++||++|+|+..               .+
T Consensus        94 GG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~~~~~~~~p~~~~~  172 (221)
T d1u9ca_          94 GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLES  172 (221)
T ss_dssp             CCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHH
T ss_pred             CCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHHHhhcccccchhhhHHH
Confidence            6777788999999999999999999999999999986 77764      48999999999763               44


Q ss_pred             hhcccccccccC-----cEEecCCeEcCCChhhHHHHHHHHHHHhcCH
Q 038375           60 QLAPACATTVES-----RVPQDGKVVTSRGPCTTMEFAVALVEQLYGK  102 (121)
Q Consensus        60 ~l~~~g~~~~~~-----~~v~dg~i~T~~g~~~~~~~a~~li~~~~~~  102 (121)
                      .+++.|++|.+.     .+++|||+||+++|.++.+|++.+|+.|..+
T Consensus       173 ~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         173 TLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence            565667777643     4899999999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.3e-21  Score=138.22  Aligned_cols=99  Identities=20%  Similarity=0.299  Sum_probs=85.0

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc-------CCCCCCeeecCcch----------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-------GLLKGLKATCYPSF----------------   57 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a-------Gll~g~~~t~~~~~----------------   57 (121)
                      ||.+++.++..|+.++++++++++++|+|++|||||+ +|+.+       ++++||++|+++..                
T Consensus       105 GG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk~vT~f~~~ee~~~~~~~~~~~~~~  183 (236)
T d1qvwa_         105 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNL  183 (236)
T ss_dssp             CSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTCEECCSCHHHHHHTTCHHHHHHTTC
T ss_pred             CCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCceeccCCcHHHhhccccccccCCCc
Confidence            7777788999999999999999999999999999996 66554       69999999999754                


Q ss_pred             ---HHhhccccccccc------CcEEecCCeEcCCChhhHHHHHHHHHHHhc
Q 038375           58 ---MEQLAPACATTVE------SRVPQDGKVVTSRGPCTTMEFAVALVEQLY  100 (121)
Q Consensus        58 ---~~~l~~~g~~~~~------~~~v~dg~i~T~~g~~~~~~~a~~li~~~~  100 (121)
                         ++.+++.|++|++      ..+|+|||+||+++|.++..++.++|+.|.
T Consensus       184 ~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         184 ATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             CCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence               3455556777754      358999999999999999999999999874

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.85  E-value=1e-22  Score=138.19  Aligned_cols=99  Identities=11%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV   80 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~   80 (121)
                      ||..++..+..|+.+++||+++++++|+|++||+|+ ++|+++|+|+|+++|+||...+.+...+.++++..+++|+|++
T Consensus        72 gg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~i  150 (184)
T d1sy7a1          72 GGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKI  150 (184)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCC
T ss_pred             eccccccccccccchhHHHHHHHhcCCceEEechHH-HHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEE
Confidence            455667788899999999999999999999999986 6999999999999999999888886656778888899999999


Q ss_pred             cCCChhhHHHHHHHHHHHhc
Q 038375           81 TSRGPCTTMEFAVALVEQLY  100 (121)
Q Consensus        81 T~~g~~~~~~~a~~li~~~~  100 (121)
                      |++++....+|+.+|.++-+
T Consensus       151 t~~~~~~~~~f~~~i~~hR~  170 (184)
T d1sy7a1         151 AKGAAGFLGEFFYAIAQHRN  170 (184)
T ss_dssp             STTCSSHHHHHHHHHHTCSC
T ss_pred             ecCCHhHHHHHHHHHHHhcc
Confidence            99999999999888876533

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.5e-20  Score=134.24  Aligned_cols=100  Identities=21%  Similarity=0.348  Sum_probs=85.8

Q ss_pred             CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc----CCCCCCeeecCcch-------------------
Q 038375            1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR----GLLKGLKATCYPSF-------------------   57 (121)
Q Consensus         1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a----Gll~g~~~t~~~~~-------------------   57 (121)
                      ||..++.++..|+.+.++|+++++++|+|++|||||+ .|..+    ++++||++|+++..                   
T Consensus       149 GGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa-~Ll~a~~g~~l~~Gk~vT~f~~~eE~~~~~~~~~p~~~~~~l  227 (279)
T d1n57a_         149 GGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYF  227 (279)
T ss_dssp             CSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCH
T ss_pred             CCccchhhhhHHHHHHHHHHHHHHcCCcceeccccch-hhhhcccCCcccCCeEEeecCCHHHhccchhccCcccccccH
Confidence            7887889999999999999999999999999999997 55544    58999999999753                   


Q ss_pred             HHhhcccccccccC----cEEecCCeEcCCChhhHHHHHHHHHHHhcC
Q 038375           58 MEQLAPACATTVES----RVPQDGKVVTSRGPCTTMEFAVALVEQLYG  101 (121)
Q Consensus        58 ~~~l~~~g~~~~~~----~~v~dg~i~T~~g~~~~~~~a~~li~~~~~  101 (121)
                      .+.+++.|+++.+.    .+++|||+||+++|.++..++..+++.|..
T Consensus       228 e~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         228 GEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             HHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            44566667777654    489999999999999999999999998763

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.6e-15  Score=103.11  Aligned_cols=83  Identities=23%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             CCccchhCccc----------CHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCC-eeecCcchHHhhcccccccc
Q 038375            1 GGVPGATNLKE----------SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGL-KATCYPSFMEQLAPACATTV   69 (121)
Q Consensus         1 gG~~g~~~l~~----------~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~-~~t~~~~~~~~l~~~g~~~~   69 (121)
                      ||.+++.+|.+          |+.+++++++|++++|+|++||+||+ +|+.++.+.++ ++|+++...+.+++.|++++
T Consensus        93 GG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~~~~~~~~~~~~l~~~Ga~~v  171 (217)
T d1vhqa_          93 GGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHV  171 (217)
T ss_dssp             CSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEECCCSCHHHHHHHHHTTCEEC
T ss_pred             CCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCeeeccChhhHHHHHHcCCcEE
Confidence            67777776654          68999999999999999999999995 89998887777 45667778888988888887


Q ss_pred             cC---cEEec--CCeEcCCC
Q 038375           70 ES---RVPQD--GKVVTSRG   84 (121)
Q Consensus        70 ~~---~~v~d--g~i~T~~g   84 (121)
                      +.   .+++|  ||+||+..
T Consensus       172 ~~~~~~~vVD~dg~ivTspA  191 (217)
T d1vhqa_         172 PCPVDDIVVDEDNKIVTTPA  191 (217)
T ss_dssp             CCCTTCCEEETTTTEEEECG
T ss_pred             eccCCeEEEecCCCEEcccc
Confidence            63   45665  99999753

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.66  E-value=9.5e-09  Score=66.97  Aligned_cols=43  Identities=2%  Similarity=-0.078  Sum_probs=38.9

Q ss_pred             hCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCe
Q 038375            7 TNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLK   50 (121)
Q Consensus         7 ~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~   50 (121)
                      ..+..|+.+++||+++++++|+|+++|+|+ ++|+.+|+++++.
T Consensus        76 ~~l~~~~~~~~~i~e~~~~~K~I~aic~g~-~~La~agl~~~~~  118 (156)
T d1p80a1          76 ADIADNGDANYYLMEAYKHLKPIALAGDAR-KFKATIKIADQGE  118 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTCCEEEEGGGG-GGGGTTTCCSSCC
T ss_pred             HHHhcchHHHHHHHHHHHcCCeEEEECchH-HHHHHcCCCcCCC
Confidence            458899999999999999999999999997 5899999998754

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.012  Score=39.41  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ...++++|++..++++++.+||-|.+ +|+.+
T Consensus        70 ~~~~~~~i~~~~~~~~PilGIC~G~Q-lla~a  100 (230)
T d1o1ya_          70 LKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  100 (230)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHhcceEEEeecCHH-HHHHH
Confidence            45678899999999999999999976 67763

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.80  E-value=0.0073  Score=39.59  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ....+.++|+++.++++++.+||.|-+ +|+.
T Consensus        62 ~~~~l~~~I~~~~~~gkPiLGIClG~Q-ll~~   92 (202)
T d1q7ra_          62 DRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAK   92 (202)
T ss_dssp             HHTTCHHHHHHHHHTTCCEEEETTHHH-HHEE
T ss_pred             hhhHHHHHHhhhccccceeeeeehhhH-Hhhh
Confidence            445677899999999999999999965 6764

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=93.19  E-value=0.012  Score=38.38  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +...+.++|+++.++++++.+||-|-+ +|++
T Consensus        57 ~~~~~~~~I~~~~~~g~pilGIC~G~Q-ll~~   87 (195)
T d2nv0a1          57 DTYQFMEPLREFAAQGKPMFGTCAGLI-ILAK   87 (195)
T ss_dssp             HHTTCHHHHHHHHHTTCCEEEETHHHH-HHSB
T ss_pred             hhchhcchhhhhhhhcceeeeccccHH-HHHh
Confidence            444567889999999999999999965 7775

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.34  E-value=0.058  Score=36.94  Aligned_cols=38  Identities=11%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             ccCHHHHHHHHHHHh-CCCeEEEechhHHHHHHhcC-CCCC
Q 038375           10 KESEVLESIVKKQAS-DGRLNAVICASPAEALGSRG-LLKG   48 (121)
Q Consensus        10 ~~~~~l~~~l~~~~~-~~~~i~aic~g~~~lLa~aG-ll~g   48 (121)
                      +.++.+...+.+|.. .++++.+||+|-+ +|.++| |+.|
T Consensus        78 ~~~~~~~~~~~~f~~~~~~~iLGICNGfQ-iL~elg~l~pg  117 (262)
T d1t3ta2          78 LFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPG  117 (262)
T ss_dssp             HHSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTT
T ss_pred             hhhhHHHHHHHHHhhcCCceEEeechHHH-HHHHhcccCCC
Confidence            346666667677664 5899999999865 888875 5544

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=92.31  E-value=0.019  Score=37.21  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +..+.+.|+++.++++||.+||-|-+ +|+.
T Consensus        63 ~~~~~~~i~~~~~~~~PiLGIClG~Q-lL~~   92 (200)
T d1k9vf_          63 ENDLIDFVRKHVEDERYVVGVCLGMQ-LLFE   92 (200)
T ss_dssp             HTTCHHHHHHHHHTTCEEEEETHHHH-TTEE
T ss_pred             cccccccccccccccceEEEEeccee-EEee
Confidence            34677889999999999999999965 7764

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.03  E-value=0.046  Score=35.15  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .....+.+....++|+.+||-|-+ +|+.
T Consensus        65 ~~~~~i~~~~~~~~PiLGIClG~Q-ll~~   92 (195)
T d1qdlb_          65 GVSLDVIKYLGKRTPILGVCLGHQ-AIGY   92 (195)
T ss_dssp             TTHHHHHHHHTTTSCEEEETHHHH-HHHH
T ss_pred             ccchhhhhhhcCCCCEEEeehhhh-hhhh
Confidence            344556677788999999999976 6765

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.18  E-value=0.16  Score=32.66  Aligned_cols=29  Identities=17%  Similarity=0.093  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           14 VLESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      .+..+++...++++|+.+||-|-+ +|+.+
T Consensus        61 ~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          61 KLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             GHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             hhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence            345566666678999999999976 77764

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=87.16  E-value=0.19  Score=32.28  Aligned_cols=27  Identities=11%  Similarity=-0.002  Sum_probs=21.0

Q ss_pred             HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375           16 ESIVKKQASDGRLNAVICASPAEALGSR   43 (121)
Q Consensus        16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a   43 (121)
                      ..++++..++++|+.+||-|-+ +|+.+
T Consensus        66 ~~~i~~~l~~~iPiLGIClG~Q-~la~~   92 (192)
T d1i7qb_          66 MPELLQRLRGQLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             HHHHHHHHBTTBCEEEETHHHH-HHHHH
T ss_pred             chhhHHhhhcCccEEeeeHHHH-HHHHH
Confidence            3456777788999999999976 67753

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.73  E-value=0.23  Score=31.98  Aligned_cols=30  Identities=13%  Similarity=0.010  Sum_probs=20.2

Q ss_pred             CHHHHHHHHH-HHhCCCeEEEechhHHHHHHh
Q 038375           12 SEVLESIVKK-QASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        12 ~~~l~~~l~~-~~~~~~~i~aic~g~~~lLa~   42 (121)
                      ...+.+.|.+ ....++|+.+||.|-+ +|+.
T Consensus        64 ~~~~~~~i~~~~~~~gkPilGIC~G~Q-lL~~   94 (218)
T d2abwa1          64 NDTLYNALVHFIHVLKKPIWGTCAGCI-LLSK   94 (218)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEETHHHH-HTEE
T ss_pred             hccchHHHHHHHHHcCCeEEEecHHHH-HHHH
Confidence            3344444444 4467999999999965 6765

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.43  Score=31.56  Aligned_cols=31  Identities=13%  Similarity=0.050  Sum_probs=25.4

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      +.....+.++++.+.+.||.+||-|-+ +|+.
T Consensus        95 ~~~~~~~~~~~~~~~~iPILGIClG~Q-lia~  125 (228)
T d1a9xb2          95 PCDYAITAIQKFLETDIPVFGICLGHQ-LLAL  125 (228)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHH
T ss_pred             cchhHHHHHHHHHhCCCCEEEEEcChH-HHHH
Confidence            445677889998888999999999976 6665

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.17  E-value=0.31  Score=30.71  Aligned_cols=31  Identities=10%  Similarity=0.071  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375           11 ESEVLESIVKKQASDGRLNAVICASPAEALGS   42 (121)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~   42 (121)
                      .+.....++++..+.++|+.+||-|-+ +|+.
T Consensus        57 ~~~~~~~~i~~~~~~~~PiLGIClG~Q-~l~~   87 (188)
T d1wl8a1          57 NTGNCEKVLEHYDEFNVPILGICLGHQ-LIAK   87 (188)
T ss_dssp             CCTTHHHHHHTGGGTCSCEEEETHHHH-HHHH
T ss_pred             cccccccccccccccccceeehhhhhh-hhhh
Confidence            344566788888899999999999966 6665