Citrus Sinensis ID: 038384

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYPPFLPPPPPPLPPLPPRPPPPRPPPPAVSETSSAAPQAKAATPSQKSKCCTIM
ccHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccHHHcccccccccccEEEEcccccccccccccHHHccccccccHHHHHHHHHcccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEc
ccHHHHHHHHHHHcccHHHccEEEEEccccccHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEHccHHHHHHHHcccccccEEEEEcHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHEHHHEEccccccHHHHHHHHcccccccEEEEEEEcccccccccccccccEEEcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEcc
MYILDAVFHRLandqyctrnrcivitgrgypdiSTRRFLRLLIEKlrlptfclvdcdpygfdilttyrfgsmqmaydakflripemhwlgafpsdfekyglpkncrlkLTVEGVKFEIEAFCACsfsflsekyipskiqGVYSVVIDaekgtvnisgkvnpntMLRILDKngrhaefsclefhgqveknnyvendhcyyygdhgyipprvpvpyssypmlgpefsyyeryppflpppppplpplpprpppprppppavsetssaapqakaatpsqkskcctim
MYILDAVFHRLAndqyctrnrcivitgrgypdisTRRFLRLLIEKLRlptfclvdcdPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKgtvnisgkvnpnTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYPPFLPPPPPPLPPLPPRPPPPRPPPPAVSETSsaapqakaatpsqkskcctim
MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIpprvpvpyssypMLGPEFSYYERYppflpppppplpplpprpppprppppAVSETSSAAPQAKAATPSQKSKCCTIM
*YILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERY*****************************************************
MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLT****KFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDA**************TMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYP*********************************************SKCCTIM
MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYPPFLPPPPPPLPPLPPRPP**********************************
MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYPPFLPPPPPPLPPLPPRPPPPRP******************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEFHGQVEKNNYVENDHCYYYGDHGYIPPRVPVPYSSYPMLGPEFSYYERYPPFLPPPPPPLPPLPPRPPPPRPPPPAVSETSSAAPQAKAATPSQKSKCCTIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
Q9M4A2362 Meiotic recombination pro yes no 0.477 0.372 0.602 2e-49
Q9LZ03427 DNA topoisomerase 6 subun no no 0.491 0.325 0.381 8e-28
Q9WTK8396 Meiotic recombination pro yes no 0.477 0.340 0.343 5e-25
Q9Y5K1396 Meiotic recombination pro yes no 0.477 0.340 0.331 2e-23
Q9YE67389 Type 2 DNA topoisomerase yes no 0.477 0.347 0.293 2e-16
A2BLE8387 Type 2 DNA topoisomerase yes no 0.477 0.348 0.294 3e-16
O05208389 Type 2 DNA topoisomerase N/A no 0.473 0.344 0.313 1e-15
Q971T1387 Type 2 DNA topoisomerase yes no 0.480 0.351 0.298 2e-15
Q22236425 Meiotic recombination pro yes no 0.353 0.235 0.336 4e-14
Q9M4A1383 Meiotic recombination pro no no 0.477 0.352 0.339 5e-11
>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 109/166 (65%), Gaps = 31/166 (18%)

Query: 5   DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
           + VF RLAND +C  NRCIVITGRGYPD+STRRFLRLL+EKL LP  CLVDCDPYGF+IL
Sbjct: 191 ETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEIL 250

Query: 65  TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE------------ 112
            TYRFGSMQMAYD + LR P+M WLGAFPSD E Y +PK C L LT E            
Sbjct: 251 ATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRC 310

Query: 113 -------------------GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
                              GVKFEIEA    S SFLSE YIPSKI+
Sbjct: 311 YLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIR 356
Required for meiotic recombination. Mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1 Back     alignment and function description
>sp|Q9WTK8|SPO11_MOUSE Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y5K1|SPO11_HUMAN Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1 Back     alignment and function description
>sp|Q9YE67|TOP6A_AERPE Type 2 DNA topoisomerase 6 subunit A OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=top6A PE=3 SV=2 Back     alignment and function description
>sp|A2BLE8|TOP6A_HYPBU Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1 Back     alignment and function description
>sp|O05208|TOP6A_SULSH Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus shibatae GN=top6A PE=1 SV=1 Back     alignment and function description
>sp|Q971T1|TOP6A_SULTO Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=top6A PE=3 SV=1 Back     alignment and function description
>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans GN=spo-11 PE=3 SV=1 Back     alignment and function description
>sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
296089901 415 unnamed protein product [Vitis vinifera] 0.487 0.332 0.635 5e-53
224061220365 predicted protein [Populus trichocarpa] 0.473 0.367 0.642 8e-53
225461890361 PREDICTED: meiotic recombination protein 0.477 0.373 0.644 1e-52
449470576187 PREDICTED: meiotic recombination protein 0.498 0.754 0.563 2e-49
356499439367 PREDICTED: meiotic recombination protein 0.480 0.370 0.604 2e-49
449464882204 PREDICTED: meiotic recombination protein 0.498 0.691 0.563 2e-49
449470533204 PREDICTED: meiotic recombination protein 0.498 0.691 0.558 1e-48
297722559381 Os03g0752200 [Oryza sativa Japonica Grou 0.477 0.354 0.578 8e-48
13383478362 AtSPO11-1 [Arabidopsis thaliana] 0.477 0.372 0.602 1e-47
15231162362 meiotic recombination protein SPO11-1 [A 0.477 0.372 0.602 1e-47
>gi|296089901|emb|CBI39720.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 120/173 (69%), Gaps = 35/173 (20%)

Query: 2   YIL----DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCD 57
           YIL    ++VF RLAND++C +NRCIVITGRGYPDI TRRFLRLL+EKL L  +CLVDCD
Sbjct: 238 YILVVEKESVFQRLANDKFCNKNRCIVITGRGYPDIPTRRFLRLLVEKLHLHVYCLVDCD 297

Query: 58  PYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE----- 112
           PYGFDILTTYRFGSMQMAYDAKFLR+PE+ WLGAFPSD EKYGLP+ C L LT E     
Sbjct: 298 PYGFDILTTYRFGSMQMAYDAKFLRVPEIEWLGAFPSDSEKYGLPEPCLLPLTAEDKRKT 357

Query: 113 --------------------------GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
                                     GVKFEIEA    S SFLSE YIPSKIQ
Sbjct: 358 EAILHRCYLQQELLHWRLELELMLQRGVKFEIEALSVHSLSFLSENYIPSKIQ 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061220|ref|XP_002300376.1| predicted protein [Populus trichocarpa] gi|222847634|gb|EEE85181.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461890|ref|XP_002264649.1| PREDICTED: meiotic recombination protein SPO11-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470576|ref|XP_004152992.1| PREDICTED: meiotic recombination protein SPO11-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356499439|ref|XP_003518548.1| PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449464882|ref|XP_004150158.1| PREDICTED: meiotic recombination protein SPO11-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470533|ref|XP_004152971.1| PREDICTED: meiotic recombination protein SPO11-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297722559|ref|NP_001173643.1| Os03g0752200 [Oryza sativa Japonica Group] gi|31712057|gb|AAP68363.1| putative topoisomerase 6 [Oryza sativa Japonica Group] gi|40539002|gb|AAR87259.1| putative DNA topoisomerase (with alternative splicing) [Oryza sativa Japonica Group] gi|53127614|emb|CAD71263.1| putative topoisomerase VI subunit A [Oryza sativa Indica Group] gi|108711121|gb|ABF98916.1| Phytochrome C, putative, expressed [Oryza sativa Japonica Group] gi|150371041|dbj|BAF65344.1| topoisomerase Spo11 [Oryza sativa Japonica Group] gi|218193764|gb|EEC76191.1| hypothetical protein OsI_13532 [Oryza sativa Indica Group] gi|222625809|gb|EEE59941.1| hypothetical protein OsJ_12593 [Oryza sativa Japonica Group] gi|255674904|dbj|BAH92371.1| Os03g0752200 [Oryza sativa Japonica Group] gi|269859219|gb|ACZ52153.1| topoisomerase 6 subunit A-like protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|13383478|gb|AAK21002.1| AtSPO11-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15231162|ref|NP_187923.1| meiotic recombination protein SPO11-1 [Arabidopsis thaliana] gi|75335900|sp|Q9M4A2.1|SPO11_ARATH RecName: Full=Meiotic recombination protein SPO11-1; Short=AtSPO11-1 gi|7270975|emb|CAB81544.1| putative topoisomerase VIA [Arabidopsis thaliana] gi|114050705|gb|ABI49502.1| At3g13170 [Arabidopsis thaliana] gi|332641783|gb|AEE75304.1| meiotic recombination protein SPO11-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2090044362 ATSPO11-1 [Arabidopsis thalian 0.392 0.306 0.729 1.1e-41
TAIR|locus:2151221427 RHL2 "ROOT HAIRLESS 2" [Arabid 0.406 0.269 0.462 1.6e-30
MGI|MGI:1349669396 Spo11 "SPO11 meiotic protein c 0.374 0.267 0.439 6.6e-28
RGD|1306454371 Spo11 "SPO11 meiotic protein c 0.374 0.285 0.429 2.2e-27
UNIPROTKB|Q5TCH7354 SPO11 "Meiotic recombination p 0.374 0.299 0.420 9.4e-27
UNIPROTKB|E2RT15396 SPO11 "Uncharacterized protein 0.374 0.267 0.420 1.1e-26
UNIPROTKB|Q9Y5K1396 SPO11 "Meiotic recombination p 0.374 0.267 0.420 1.1e-26
UNIPROTKB|E1BMM6395 SPO11 "Uncharacterized protein 0.374 0.268 0.411 1.5e-26
ZFIN|ZDB-GENE-040426-1900383 spo11 "SPO11 meiotic protein c 0.349 0.258 0.45 1.5e-26
UNIPROTKB|A5GFN4357 SPO11 "SPO11 meiotic protein c 0.374 0.296 0.411 1.9e-26
TAIR|locus:2090044 ATSPO11-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 81/111 (72%), Positives = 89/111 (80%)

Query:     5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
             + VF RLAND +C  NRCIVITGRGYPD+STRRFLRLL+EKL LP  CLVDCDPYGF+IL
Sbjct:   191 ETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEIL 250

Query:    65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVK 115
              TYRFGSMQMAYD + LR P+M WLGAFPSD E Y +PK C L LT E  K
Sbjct:   251 ATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKK 301
GO:0003677 "DNA binding" evidence=IEA;ISS;IDA
GO:0003824 "catalytic activity" evidence=IEA
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005694 "chromosome" evidence=IEA
GO:0006259 "DNA metabolic process" evidence=IEA;ISS
GO:0006265 "DNA topological change" evidence=ISS
GO:0007129 "synapsis" evidence=RCA;IMP
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IMP
GO:0034090 "maintenance of meiotic sister chromatid cohesion" evidence=IGI
GO:0042138 "meiotic DNA double-strand break formation" evidence=IGI;RCA
GO:0000706 "meiotic DNA double-strand break processing" evidence=IGI
GO:0051026 "chiasma assembly" evidence=IMP
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007059 "chromosome segregation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007140 "male meiosis" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0032204 "regulation of telomere maintenance" evidence=RCA
GO:0032504 "multicellular organism reproduction" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2151221 RHL2 "ROOT HAIRLESS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1349669 Spo11 "SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306454 Spo11 "SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TCH7 SPO11 "Meiotic recombination protein SPO11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RT15 SPO11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5K1 SPO11 "Meiotic recombination protein SPO11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMM6 SPO11 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1900 spo11 "SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A5GFN4 SPO11 "SPO11 meiotic protein covalently bound to DSB-like (S. cerevisiae)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
cd00223160 cd00223, TOPRIM_TopoIIB_SPO, TOPRIM_TopoIIB_SPO: t 2e-46
PRK04342367 PRK04342, PRK04342, DNA topoisomerase VI subunit A 4e-28
COG1697356 COG1697, COG1697, DNA topoisomerase VI, subunit A 2e-25
PLN00060384 PLN00060, PLN00060, meiotic recombination protein 6e-20
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-05
PHA0173294 PHA01732, PHA01732, proline-rich protein 1e-05
pfam06003264 pfam06003, SMN, Survival motor neuron protein (SMN 1e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 2e-05
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 5e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 2e-04
pfam04652315 pfam04652, DUF605, Vta1 like 3e-04
pfam07174 297 pfam07174, FAP, Fibronectin-attachment protein (FA 3e-04
pfam04652315 pfam04652, DUF605, Vta1 like 4e-04
smart00817 411 smart00817, Amelin, Ameloblastin precursor (Amelin 4e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 5e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 7e-04
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 8e-04
PHA0173294 PHA01732, PHA01732, proline-rich protein 9e-04
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 9e-04
pfam07174 297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.001
pfam05308248 pfam05308, Mito_fiss_reg, Mitochondrial fission re 0.001
pfam10873154 pfam10873, DUF2668, Protein of unknown function (D 0.001
cd0018883 cd00188, TOPRIM, Topoisomerase-primase domain 0.001
pfam07174 297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.002
PRK14952 584 PRK14952, PRK14952, DNA polymerase III subunits ga 0.002
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.002
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.002
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.003
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
pfam07174 297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.004
PRK12323 700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.004
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.004
PRK14965 576 PRK14965, PRK14965, DNA polymerase III subunits ga 0.004
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 0.004
>gnl|CDD|173774 cd00223, TOPRIM_TopoIIB_SPO, TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11 Back     alignment and domain information 
 Score =  152 bits (387), Expect = 2e-46
 Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 36/161 (22%)

Query: 2   YIL----DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCD 57
           ++L    +AVF RL  + +  RN CI+ITG+GYPD +TRRFLR L E+L LP + LVD D
Sbjct: 2   FVLVVEKEAVFQRLIEEGFHERNNCILITGKGYPDRATRRFLRRLHEELDLPVYILVDGD 61

Query: 58  PYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE----- 112
           PYG  IL TY++GS+++AY+++ L  P++ WLG  PSD  +   P    L L+       
Sbjct: 62  PYGISILLTYKYGSIKLAYESESLATPDLRWLGLRPSDIIRL--PDLPLLPLSERDLKRA 119

Query: 113 -------------------------GVKFEIEAFCACSFSF 128
                                    G K EIEA  +C   F
Sbjct: 120 KSLLRRPRFKELPEWKRELQLMLKLGKKAEIEALASCGLEF 160

This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD. For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. Length = 160
>gnl|CDD|235287 PRK04342, PRK04342, DNA topoisomerase VI subunit A; Provisional Back     alignment and domain information
>gnl|CDD|224611 COG1697, COG1697, DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|177691 PLN00060, PLN00060, meiotic recombination protein SPO11-2; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein Back     alignment and domain information
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator Back     alignment and domain information
>gnl|CDD|151322 pfam10873, DUF2668, Protein of unknown function (DUF2668) Back     alignment and domain information
>gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
PLN00060384 meiotic recombination protein SPO11-2; Provisional 100.0
KOG2795372 consensus Catalytic subunit of the meiotic double 100.0
PRK04342367 DNA topoisomerase VI subunit A; Provisional 100.0
COG1697356 DNA topoisomerase VI, subunit A [DNA replication, 100.0
cd00223160 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomera 100.0
KOG160373 consensus Copper chaperone [Inorganic ion transpor 99.02
PF09664152 DUF2399: Protein of unknown function C-terminus (D 98.58
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 97.56
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.95
PF09983181 DUF2220: Uncharacterized protein conserved in bact 96.91
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.32
KOG4656247 consensus Copper chaperone for superoxide dismutas 96.3
TIGR02679385 conserved hypothetical protein TIGR02679. Members 95.75
COG260871 CopZ Copper chaperone [Inorganic ion transport and 95.06
KOG2236483 consensus Uncharacterized conserved protein [Funct 92.28
cd0018883 TOPRIM Topoisomerase-primase domain. This is a nuc 91.27
PLN02957238 copper, zinc superoxide dismutase 90.27
>PLN00060 meiotic recombination protein SPO11-2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-44  Score=345.61  Aligned_cols=137  Identities=36%  Similarity=0.660  Sum_probs=129.5

Q ss_pred             chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhc-CCcEEEEecCCccchhHHHHhhhcccccccccccc
Q 038384            3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKL-RLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFL   81 (283)
Q Consensus         3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~-~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l   81 (283)
                      ||||||+||++++|+++.+|||||||||||++||+||++|++++ ++|||+|||+||||++||+||||||.+++|+++.+
T Consensus       218 EKeavF~rL~e~~~~~~~~cILITgKGyPD~aTR~fL~~L~~~~p~lPv~~LvD~DP~Gi~I~~tYkyGS~~~a~es~~l  297 (384)
T PLN00060        218 EKDAIFQRLAEDRFFNHIPCILITAKGYPDLATRFILHRLSQTFPNLPILALVDWNPAGLAILCTYKFGSIGMGLEAYRY  297 (384)
T ss_pred             ecHHHHHHHHHhhhhhhCCEEEEecCCCCCHHHHHHHHHHHHhcCCCCEEEEECCCcchHHHHHHhhcCchhhhhccccc
Confidence            89999999999999999999999999999999999999999996 89999999999999999999999999999999999


Q ss_pred             CCCCceeeccCcccccccCCCCcccccCChh----------------------------hhHHHHHHHhhcCcccccccc
Q 038384           82 RIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE----------------------------GVKFEIEAFCACSFSFLSEKY  133 (283)
Q Consensus        82 ~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r----------------------------~~KaEIEAL~~~~~~fl~~~Y  133 (283)
                      +|+ ++||||+++|+..  ++.+.+++||.|                            ++|+|||||+++|++||++ |
T Consensus       298 a~~-i~WLGl~~sDi~~--l~~~~~i~Lt~rD~~~~~~lL~~~~~~~~w~~EL~~Ml~~~~KaEiEAL~~~g~~fl~~-Y  373 (384)
T PLN00060        298 ACN-VKWLGLRGDDLQL--IPPEAFVELKPRDLQIAKSLLSSKFLQNRYREELTLMVQTGKRAEIEALYSHGYDYLGK-Y  373 (384)
T ss_pred             ccC-CeEecCCHHHHhc--CCHhhcCCCCHHHHHHHHHHhhChhHHHHHHHHHHHHHHhCcchhhHhHHhcChHHHHH-H
Confidence            885 9999999999985  778888999887                            8899999999999999995 9


Q ss_pred             ccccccCeeE
Q 038384          134 IPSKIQGVYS  143 (283)
Q Consensus       134 Lp~KI~GV~s  143 (283)
                      ||+||..-++
T Consensus       374 lp~Ki~~~~~  383 (384)
T PLN00060        374 VARKIVQGDY  383 (384)
T ss_pred             HHHHHhcCCc
Confidence            9999987653

>KOG2795 consensus Catalytic subunit of the meiotic double strand break transesterase [Replication, recombination and repair] Back     alignment and domain information
>PRK04342 DNA topoisomerase VI subunit A; Provisional Back     alignment and domain information
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11 Back     alignment and domain information
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF09983 DUF2220: Uncharacterized protein conserved in bacteria C-term(DUF2220); InterPro: IPR024534 This is a domain of unknown function that is found predominantly in hypothetical bacterial proteins Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02679 conserved hypothetical protein TIGR02679 Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2236 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00188 TOPRIM Topoisomerase-primase domain Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2zbk_A389 Crystal Structure Of An Intact Type Ii Dna Topoisom 3e-17
1d3y_A301 Structure Of The Dna Topoisomerase Vi A Subunit Len 4e-12
2q2e_A369 Crystal Structure Of The Topoisomerase Vi Holoenzym 3e-11
>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna Topoisomerase: Insights Into Dna Transfer Mechanisms Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 38/172 (22%)
Query: 5   DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
           DAVF +L    +  + + I+IT  G PD +TRRF+R L E+L+LP + L D DPYG+ I 
Sbjct: 211 DAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIF 270
Query: 65  TTYRFGSMQMAYDAKFLRIPEMHWLG---------------------------AFPSDFE 97
           + +R GS+ ++Y+++ L  P+  +LG                           A  +D +
Sbjct: 271 SVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSRKKPYLSEAERKNYIIKAKDADIK 330
Query: 98  KYGLPKN---CRLKLTVEGV--------KFEIEAFCACSFSFLSEKYIPSKI 138
           +    KN    + K   E +        K EIEA  +    FL+ +YIP KI
Sbjct: 331 RAEEIKNYEWFKTKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKI 382
>pdb|1D3Y|A Chain A, Structure Of The Dna Topoisomerase Vi A Subunit Length = 301 Back     alignment and structure
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From Methanosarcina Mazei Length = 369 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2q2e_A369 Type II DNA topoisomerase VI subunit A; DNA-bindin 6e-43
2zbk_A389 Type II DNA topoisomerase VI subunit A; DNA bindin 9e-41
1d3y_A301 DNA topoisomerase VI A subunit; DNA binding protei 1e-40
2crl_A98 Copper chaperone for superoxide dismutase; SOD1, f 4e-07
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 7e-06
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 3e-05
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 4e-05
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 6e-04
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 369 Back     alignment and structure
 Score =  149 bits (377), Expect = 6e-43
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 5   DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
             ++ RL  + +      I++  +G P  STRR ++ + E+L +P     D DP+ + I 
Sbjct: 204 GGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIY 263

Query: 65  TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP---------KNCRLKLTVE--- 112
            +  +G+++ A+ ++F+  P   +LG  PSD  +Y L             R +L+     
Sbjct: 264 ASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDVSALRSELSDPRFE 323

Query: 113 --------------GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
                         G K E +AF      F++E Y+P++++
Sbjct: 324 SDYWKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLK 364
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 389 Back     alignment and structure
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1 Length = 301 Back     alignment and structure
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
1d3y_A301 DNA topoisomerase VI A subunit; DNA binding protei 100.0
2zbk_A389 Type II DNA topoisomerase VI subunit A; DNA bindin 100.0
2q2e_A369 Type II DNA topoisomerase VI subunit A; DNA-bindin 100.0
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 98.08
1cc8_A73 Protein (metallochaperone ATX1); copper transport, 97.84
2crl_A98 Copper chaperone for superoxide dismutase; SOD1, f 97.48
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 97.34
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 97.16
2xmm_A64 SSR2857 protein, ATX1; metal transport, copper hom 96.98
2roe_A66 Heavy metal binding protein; NMR {Thermus thermoph 96.74
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 96.72
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 96.55
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 96.36
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 96.35
2k2p_A85 Uncharacterized protein ATU1203; putative metal-bi 96.24
2l3m_A71 Copper-ION-binding protein; structural genomics, c 96.14
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 95.72
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 95.67
1opz_A76 Potential copper-transporting ATPase; mutation, fo 95.62
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 95.61
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 95.58
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 95.53
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 95.46
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 95.45
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 95.42
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 95.39
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 95.29
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 95.0
1yg0_A66 COP associated protein; open-faced beta-sandwich, 94.94
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 94.79
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 94.57
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 94.55
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 94.27
2kyz_A67 Heavy metal binding protein; structural genomics, 94.16
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 93.83
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 93.26
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 93.23
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 93.0
2kkh_A95 Putative heavy metal transporter; zinc transport, 92.25
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 92.13
2aj0_A71 Probable cadmium-transporting ATPase; ferrodoxin-l 91.27
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 83.26
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1 Back     alignment and structure
Probab=100.00  E-value=6e-43  Score=326.51  Aligned_cols=137  Identities=31%  Similarity=0.601  Sum_probs=120.8

Q ss_pred             chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccch-hHHHHhhhcccccccccccc
Q 038384            3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGF-DILTTYRFGSMQMAYDAKFL   81 (283)
Q Consensus         3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi-~I~~tYk~GS~~~a~es~~l   81 (283)
                      ||||||++|++++|+++.+|||||||||||++||+||++|++++++|||+|+|+||||+ +|+++|++||.+++|+++.+
T Consensus       129 EK~avF~rL~~~~~~~~~~~ilIt~kGyPd~aTR~fl~~L~~~~~lpv~~l~D~DP~G~~~I~~tyk~GS~~~~~~~~~l  208 (301)
T 1d3y_A          129 ETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKL  208 (301)
T ss_dssp             SCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC---------CTT
T ss_pred             echHHHHHHHHhcccccCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCChHHHHHHHHHHHhCchhhccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCceeeccCcccccccCCCCcccccCChh-------------------------------hhHHHHHHHhhcCccccc
Q 038384           82 RIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-------------------------------GVKFEIEAFCACSFSFLS  130 (283)
Q Consensus        82 ~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-------------------------------~~KaEIEAL~~~~~~fl~  130 (283)
                      +||+++|+||+++|+.+++++   .++||.+                               ++|+|||||+++|++|++
T Consensus       209 ~~p~~~wlGv~~sdi~~~~~~---~~~Lt~~D~~~l~~ll~~~~~~~~~~~w~~el~~ml~~~~KaEieal~~~g~~f~~  285 (301)
T 1d3y_A          209 SIPAARLIGVTPQDIIDYDLP---THPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVV  285 (301)
T ss_dssp             CCTTCEEEESCHHHHHHTTCC---CEECCHHHHHHHHHHHHHCHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHH
T ss_pred             cCCccEEcCCCHHHHHhcccc---cCcCCHHHHHHHHHHhhCccccCcHHHHHHHHHHHHHhCCEEEEehhhhcCccchH
Confidence            999999999999999988764   4577665                               779999999999999999


Q ss_pred             cccccccccCee
Q 038384          131 EKYIPSKIQGVY  142 (283)
Q Consensus       131 ~~YLp~KI~GV~  142 (283)
                      ++||++||+..+
T Consensus       286 ~~yl~~Ki~~~~  297 (301)
T 1d3y_A          286 NTYLPEKIKDES  297 (301)
T ss_dssp             HTHHHHHHHCGG
T ss_pred             HHHHHHHHhcCC
Confidence            999999998765
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Back     alignment and structure
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Back     alignment and structure
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Back     alignment and structure
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1d3ya_298 e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit 4e-42
d1sb6a_64 d.58.17.1 (A:) Copper chaperone {Synechocystis sp. 5e-04
>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 298 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA topoisomerase IV, alpha subunit
superfamily: DNA topoisomerase IV, alpha subunit
family: DNA topoisomerase IV, alpha subunit
domain: DNA topoisomerase IV, alpha subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  144 bits (364), Expect = 4e-42
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 29/164 (17%)

Query: 5   DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDI- 63
             +F RL  +++  ++ CI+++ +G P  +TRRF++ L E+  LP     D DPYG+   
Sbjct: 128 SGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNI 187

Query: 64  LTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE----------- 112
             T + GS +  + A  L IP    +G  P D   Y LP +   +  ++           
Sbjct: 188 YRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLPTHPLKEQDIKRIKDGLKNDDF 247

Query: 113 -----------------GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
                            GV+ E ++       ++   Y+P KI+
Sbjct: 248 VRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIK 291
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1d3ya_298 DNA topoisomerase IV, alpha subunit {Archaeon Meth 100.0
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 98.63
d1fe0a_66 ATX1 metallochaperone protein (ATOX1) {Human (Homo 98.59
d1cc8a_72 ATX1 metallochaperone protein (ATOX1) {Baker's yea 98.39
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 97.75
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 97.46
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 97.34
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 97.33
d1p6ta279 Potential copper-translocating P-type ATPase CopA 96.86
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 96.85
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 96.85
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 96.68
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 96.63
d1p6ta172 Potential copper-translocating P-type ATPase CopA 96.35
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 96.01
>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA topoisomerase IV, alpha subunit
superfamily: DNA topoisomerase IV, alpha subunit
family: DNA topoisomerase IV, alpha subunit
domain: DNA topoisomerase IV, alpha subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4e-41  Score=311.45  Aligned_cols=135  Identities=31%  Similarity=0.620  Sum_probs=117.5

Q ss_pred             chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccch-hHHHHhhhcccccccccccc
Q 038384            3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGF-DILTTYRFGSMQMAYDAKFL   81 (283)
Q Consensus         3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi-~I~~tYk~GS~~~a~es~~l   81 (283)
                      ||||||++|++++++...+|||||||||||++||+||++|++++++|||+|+|+||||+ .|+++|+|||.+++|+++.+
T Consensus       126 EKeavF~rL~~~~~~~~~~~ilitgkGyPd~~TR~fL~~L~~~~~lp~~~l~D~Dp~G~~~I~~~yk~GS~~~~~~~~~~  205 (298)
T d1d3ya_         126 ETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKL  205 (298)
T ss_dssp             SCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC---------CTT
T ss_pred             eehhHHHHHHhcCcccccceeeeccCCCCCHHHHHHHHHHhhccCCCEEEEEcCCcchHHHHHHHHHHHhhhcccccccc
Confidence            89999999999999999999999999999999999999999999999999999999995 68999999999999999999


Q ss_pred             CCCCceeeccCcccccccCCCCcccccCChh-------------------------------hhHHHHHHHhhcCccccc
Q 038384           82 RIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-------------------------------GVKFEIEAFCACSFSFLS  130 (283)
Q Consensus        82 ~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-------------------------------~~KaEIEAL~~~~~~fl~  130 (283)
                      ++|+++|+|++++|+.++++.   .++||.|                               ++|+|||||++.|.+|++
T Consensus       206 ~~p~l~wlG~~~~d~~~~~~~---~~~Lt~~D~k~~~~ll~~~~~~~~~~~w~~EL~~ml~~~~KaEiEal~~~~~~f~~  282 (298)
T d1d3ya_         206 SIPAARLIGVTPQDIIDYDLP---THPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVV  282 (298)
T ss_dssp             CCTTCEEEESCHHHHHHTTCC---CEECCHHHHHHHHHHHHHCHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHH
T ss_pred             cCCCCEEeeccHHHHhhcccc---cCccchhHHHHHHHHhcChhhhhcCHHHHHHHHHHHHhCCeEEEehhhhcCCcccH
Confidence            999999999999999887654   3467666                               679999999999999999


Q ss_pred             cccccccccC
Q 038384          131 EKYIPSKIQG  140 (283)
Q Consensus       131 ~~YLp~KI~G  140 (283)
                      ++||++||+.
T Consensus       283 ~~Yl~~Ki~~  292 (298)
T d1d3ya_         283 NTYLPEKIKD  292 (298)
T ss_dssp             HTHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999999974
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Back     information, alignment and structure
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure