Citrus Sinensis ID: 038426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEENDSKRPERGLFFKSLGQKKPVGKAKATEEVKKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGMLSETEKRGHEKPDREKK
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHcccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccc
Coil and Loop (DISEMBL)
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCkskdseseespsegdiKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEieendskrperglffkslgqkkpvgkaKATEEVKKIKEITtesagsktRRNIYLAFIGLLVIGIadsfisssdWRKVAVLGAILVPLLLQFLHEQgmlsetekrghekpdrekk
Flexible Loop (DISEMBL)
MIALKAIQtaltptahllfhtrrltgtrTSFVSLCkskdseseespsegdiKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEieendskrperglffkslgqkkpvgkakateevkkikeittesagsktrrNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEqgmlsetekrghekpdrekk
Low Complexity Region (SEG)
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDseseespseGDIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEENDSKRPERGLFFKSLGQKKPVGkakateevkkikeitteSAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGMLSETEKRGHEKPDREKK
Disordered region (IsUnstruct)
****KAIQTALTPTAHLLFHTRRLTGTRTSFVSLC********************LLARIAMLQAQKVRLTDYLDERSAYLTQFAEEA*******************************************************************************************RRNIYLAFIGLLVIGI*********WRKVAVLGAILVPLLLQFLHE********************
Disordered Region (DISOPRED)
****K**QTALTPTAHLLFHTRRL********************************LARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAF***************SKRPERGLFFKSL****************************KTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHE********************
Disordered Region (DISEMBL)
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSL****************IKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQ*******************RPERGLFFKSLGQ***********EVKKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGML****************
Disordered Region (DISPRO)
MIALKAIQTALTPTAHLLFHTRRLTGTRTSF***CK************GDIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEENDSKRPERGLFFKSLGQKKPVGKAKATEEVKKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGML****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIxxxxxxxxxxxxxxxxxxxxxIEENDSKRPERGLFFKSLGQKKPVGKAKATEEVKKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGMLSETEKRGHEKPDREKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224090927	255	predicted protein [Populus trichocarpa]	0.995	0.956	0.678	1e-90
118489321	255	unknown [Populus trichocarpa x Populus d	0.995	0.956	0.674	9e-90
255586503	261	conserved hypothetical protein [Ricinus	0.991	0.931	0.619	8e-82
15232007	258	uncharacterized protein [Arabidopsis tha	0.955	0.906	0.62	5e-78
297829442	254	hypothetical protein ARALYDRAFT_478215 [	0.951	0.917	0.622	1e-77
297740242	1454	unnamed protein product [Vitis vinifera]	0.938	0.158	0.657	1e-72
225440620	258	PREDICTED: uncharacterized protein LOC10	0.938	0.891	0.648	2e-72
449460381	257	PREDICTED: uncharacterized protein LOC10	0.951	0.906	0.599	3e-72
356566648	254	PREDICTED: uncharacterized protein LOC10	0.979	0.944	0.552	8e-66
356523257	256	PREDICTED: uncharacterized protein LOC10	0.946	0.906	0.607	5e-65

>gi|224090927|ref|XP_002309119.1| predicted protein [Populus trichocarpa] gi|222855095|gb|EEE92642.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 200/255 (78%), Gaps = 11/255 (4%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLARI 60
           M +LKAI T+  PT H  FHTR+ + T+ S + LCKS DS+SE  P EGD KKQELLA+I
Sbjct: 1   MFSLKAINTSFAPTNHGFFHTRKPSNTKNSILFLCKSNDSDSEAPPPEGDTKKQELLAKI 60

Query: 61  AMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQA 120
           AMLQAQKVRLTDYLDERS YLTQFAEEANAEFDKIGEDALKGLDEA +RIMENIESQMQA
Sbjct: 61  AMLQAQKVRLTDYLDERSDYLTQFAEEANAEFDKIGEDALKGLDEAGARIMENIESQMQA 120

Query: 121 FEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEVKKIKEI 170
           FEESAE NR EIE+ND+K  +           G+FFKSLGQK PV KAKA EE +KIK++
Sbjct: 121 FEESAELNRTEIEKNDNKVADFEVQMENDRNEGMFFKSLGQKAPVDKAKAKEEAQKIKDL 180

Query: 171 TTESAGSKTRRNIYLAFIGLLVIGIADSFISSS-DWRKVAVLGAILVPLLLQFLHEQGML 229
           T   AGSKTR+NIYLA +G+L I IADSF+SSS DWRKVAVLGAILV L+ QF +EQ + 
Sbjct: 181 TNAKAGSKTRKNIYLALMGVLAIVIADSFLSSSPDWRKVAVLGAILVGLITQFSYEQRLA 240

Query: 230 SETEKRGHEKPDREK 244
           S+ E+   E+ D+EK
Sbjct: 241 SDIERAEKEQTDKEK 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489321|gb|ABK96465.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  335 bits (859), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 172/255 (67%), Positives = 199/255 (78%), Gaps = 11/255 (4%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLARI 60
           M +LKAI T+  PT H  FHTR+ + T+ S + LCKS DS+SE  P EGD KKQELLA+I
Sbjct: 1   MFSLKAINTSFAPTNHGFFHTRKPSNTKNSILFLCKSNDSDSEAPPPEGDTKKQELLAKI 60

Query: 61  AMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQA 120
           AMLQAQKVRLTDYLDERS YLTQFAEEANAEFDKIGEDALKGLDEA +RI+ENIESQMQA
Sbjct: 61  AMLQAQKVRLTDYLDERSDYLTQFAEEANAEFDKIGEDALKGLDEAGARILENIESQMQA 120

Query: 121 FEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEVKKIKEI 170
           FEESAE NR EIE+ND+K  +           G+FFKSLGQK PV KAKA EE +KIK++
Sbjct: 121 FEESAELNRTEIEKNDNKVADFEVQMENDRNEGMFFKSLGQKAPVDKAKAKEEAQKIKDL 180

Query: 171 TTESAGSKTRRNIYLAFIGLLVIGIADSFISSS-DWRKVAVLGAILVPLLLQFLHEQGML 229
           T   AGSKTR NIYLA +G+L I IADSF+SSS DWRKVAVLGAILV L+ QF +EQ + 
Sbjct: 181 TNAKAGSKTRMNIYLALMGVLAIVIADSFLSSSPDWRKVAVLGAILVGLITQFSYEQRLA 240

Query: 230 SETEKRGHEKPDREK 244
           S+ E+   E+ D+EK
Sbjct: 241 SDIERAEKEQTDKEK 255

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586503|ref|XP_002533892.1| conserved hypothetical protein [Ricinus communis] gi|223526156|gb|EEF28492.1| conserved hypothetical protein [Ricinus communis]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/263 (61%), Positives = 194/263 (73%), Gaps = 20/263 (7%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSES--------EESPSEGDIK 52
           MIALKAI T+ TPT H LFHTRR T  + +   LCK  ++ S        E SP EGD +
Sbjct: 1   MIALKAIHTSFTPTKHALFHTRRPTNQKNTIWCLCKPNNNNSDSNSNSDSEASPPEGDTR 60

Query: 53  KQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIME 112
           KQELLARIAMLQ +KVRLTDY+DERS+YL+QF EEA+AEFDKIGEDALKGLDEA +RIME
Sbjct: 61  KQELLARIAMLQTEKVRLTDYIDERSSYLSQFTEEASAEFDKIGEDALKGLDEAGARIME 120

Query: 113 NIESQMQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATE 162
           NIESQM AFEESAE NR +IE+N++K  +           G+FFK+LGQK P+ KA A  
Sbjct: 121 NIESQMLAFEESAELNRKDIEQNENKLADFEGQIVKDRNEGMFFKNLGQKPPIDKANAKA 180

Query: 163 EVKKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQF 222
           E +KIK++T   AGSKTR+NIYLA I ++VI IADSFISS DWRKVAVLGA+LV L+ QF
Sbjct: 181 EAEKIKDLTKAKAGSKTRKNIYLALIAVIVISIADSFISSPDWRKVAVLGAVLVGLITQF 240

Query: 223 LHEQGMLSETEKRGHEKPDREKK 245
            +EQ + SE E    E  D+EKK
Sbjct: 241 SYEQKLSSELE--SIENTDKEKK 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232007|ref|NP_187517.1| uncharacterized protein [Arabidopsis thaliana] gi|5923670|gb|AAD56321.1|AC009326_8 unknown protein [Arabidopsis thaliana] gi|44681474|gb|AAS47677.1| At3g09050 [Arabidopsis thaliana] gi|62320254|dbj|BAD94528.1| hypothetical protein [Arabidopsis thaliana] gi|332641193|gb|AEE74714.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/250 (62%), Positives = 188/250 (75%), Gaps = 16/250 (6%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPS------EGDIKKQ 54
           M  L A QT LTP  H+LF+  R + +R  F+ L KS D  S+          EGD ++Q
Sbjct: 2   MNTLHAFQTTLTPNFHVLFNASRHSLSRPQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQ 61

Query: 55  ELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENI 114
           ELLARIAM+Q  KVRLTD+LDERS YLT+FAEEANAEFDK+GEDA+K LDEAS+RI+ENI
Sbjct: 62  ELLARIAMIQTSKVRLTDFLDERSEYLTKFAEEANAEFDKVGEDAMKDLDEASTRILENI 121

Query: 115 ESQMQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEV 164
           ES+MQAFEESA  NR+EIEEND+K  E           GLFFKSL  KKPV + +A EE 
Sbjct: 122 ESKMQAFEESAGLNRLEIEENDNKLAEFEEKIQVDRNEGLFFKSLRDKKPVDREQAREET 181

Query: 165 KKIKEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLH 224
           +KI+E+T ESAGSK+RRNIYL  IG++V+ IADSF+SS DWRKVA+LGAILVPLL QF++
Sbjct: 182 EKIQEVTKESAGSKSRRNIYLGLIGIVVLAIADSFVSSPDWRKVAILGAILVPLLTQFVY 241

Query: 225 EQGMLSETEK 234
           EQ +LSE +K
Sbjct: 242 EQTLLSEADK 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829442|ref|XP_002882603.1| hypothetical protein ARALYDRAFT_478215 [Arabidopsis lyrata subsp. lyrata] gi|297328443|gb|EFH58862.1| hypothetical protein ARALYDRAFT_478215 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/249 (62%), Positives = 185/249 (74%), Gaps = 16/249 (6%)

Query: 4   LKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPS------EGDIKKQELL 57
           L A QT LTP  H+LF+  R   +RT F+ L KS D  S+          EGD ++QELL
Sbjct: 5   LHAFQTTLTPNFHVLFNASRHPISRTQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQELL 64

Query: 58  ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQ 117
           ARIAM+Q  KVRLTD+LDERS YLT+FAEEAN EFDK+GEDA+K LDEAS+RI+ENIES+
Sbjct: 65  ARIAMIQTSKVRLTDFLDERSEYLTKFAEEANVEFDKVGEDAMKDLDEASTRILENIESK 124

Query: 118 MQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEVKKI 167
           MQAFEESA  NR+EIEENDSK  E           GLFFKSL  KKPV + +A +E  KI
Sbjct: 125 MQAFEESAGLNRLEIEENDSKLAEFEEKIQVDRNEGLFFKSLRDKKPVDRKQAKQEADKI 184

Query: 168 KEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQG 227
           +E+T ESAGSK+RRNIYL  IG++V+ IADSFISS DWRKVA+LGAILVPLL QF++EQ 
Sbjct: 185 QEVTKESAGSKSRRNIYLGLIGIVVLAIADSFISSPDWRKVAILGAILVPLLTQFVYEQT 244

Query: 228 MLSETEKRG 236
           +LSE   +G
Sbjct: 245 LLSEEANKG 253

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740242|emb|CBI30424.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 161/245 (65%), Positives = 193/245 (78%), Gaps = 15/245 (6%)

Query: 1    MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPS---EGDIKKQELL 57
            MIALKA QT+ T T ++LFHTRRL   R++ +SLCKS D +S  S     EGD +KQELL
Sbjct: 1197 MIALKATQTSFTSTKYVLFHTRRLPKKRST-LSLCKSNDDDSSPSDGSLPEGDSRKQELL 1255

Query: 58   ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQ 117
            ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFD+IGE+ALK L+EA +RIMEN+ESQ
Sbjct: 1256 ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDQIGENALKELEEAGTRIMENMESQ 1315

Query: 118  MQAFEESAEENRMEIEENDSK--------RPER--GLFFKSLGQKKPVGKAKATEEVKKI 167
            MQAF+ES+E +R+EIE N+ K          ER  GLFFK+L Q+    KA+A EE++KI
Sbjct: 1316 MQAFQESSEMSRLEIENNEKKLADFEGQIEKERNEGLFFKNLRQRTTKEKAEAKEEMEKI 1375

Query: 168  KEITTESAGSKTRRNIYLAFIGLLVIGIADSFIS-SSDWRKVAVLGAILVPLLLQFLHEQ 226
            +E+T E+AGSK RRNIYLA + +LVIGI D+ IS SSDWRKVAVLGAILV LL QF++EQ
Sbjct: 1376 RELTKENAGSKIRRNIYLALVAVLVIGIIDNLISPSSDWRKVAVLGAILVALLSQFIYEQ 1435

Query: 227  GMLSE 231
             M +E
Sbjct: 1436 RMTTE 1440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440620|ref|XP_002274014.1| PREDICTED: uncharacterized protein LOC100242508 [Vitis vinifera]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 192/245 (78%), Gaps = 15/245 (6%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPS---EGDIKKQELL 57
           MIALKA QT+ T T ++LFHTRRL   R++ +SLCKS D +S  S     EGD +KQELL
Sbjct: 1   MIALKATQTSFTSTKYVLFHTRRLPKKRST-LSLCKSNDDDSSPSDGSLPEGDSRKQELL 59

Query: 58  ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQ 117
           ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFD+IGE+ALK L+EA +RIMEN+ESQ
Sbjct: 60  ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDQIGENALKELEEAGTRIMENMESQ 119

Query: 118 MQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEVKKI 167
           MQAF+ES+E +R+EIE N+ K  +           GLFFK+L Q+    KA+A EE++KI
Sbjct: 120 MQAFQESSEMSRLEIENNEKKLADFEGQIEKERNEGLFFKNLRQRTTKEKAEAKEEMEKI 179

Query: 168 KEITTESAGSKTRRNIYLAFIGLLVIGIADSFIS-SSDWRKVAVLGAILVPLLLQFLHEQ 226
           +E+T E+AGSK RRNIYLA + +LVIGI D+ IS SSDWRKVAVLGAILV LL QF++EQ
Sbjct: 180 RELTKENAGSKIRRNIYLALVAVLVIGIIDNLISPSSDWRKVAVLGAILVALLSQFIYEQ 239

Query: 227 GMLSE 231
            M +E
Sbjct: 240 RMTTE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460381|ref|XP_004147924.1| PREDICTED: uncharacterized protein LOC101218084 [Cucumis sativus]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 182/247 (73%), Gaps = 14/247 (5%)

Query: 1   MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEES--PSEGDIKKQELLA 58
           MI  K IQT+ T   +   +T +L  ++ SF  LC+S  S+S  S  P EGD +KQE+LA
Sbjct: 1   MIVFKPIQTSFTVYKNTFLYTPKLPISKNSFSCLCQSNTSDSAPSTPPPEGDPQKQEILA 60

Query: 59  RIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQM 118
           RIA LQ QK+RLT +LDE+SA LTQFAEEA+AEF+KIGEDAL+GLDEAS+RIM NIESQM
Sbjct: 61  RIAQLQTQKLRLTGFLDEKSADLTQFAEEADAEFEKIGEDALRGLDEASARIMGNIESQM 120

Query: 119 QAFEESAEENRMEIEENDS-----------KRPERGLFFKSLGQKKPVGKAKATEEVKKI 167
           Q FEES E NR EIE+ND            +R E GLFF++L  +KP  K KA  E++KI
Sbjct: 121 QVFEESVELNRQEIEKNDDMLAKFEGQIEEERNE-GLFFQNLRPRKPADKVKAKVEMEKI 179

Query: 168 KEITTESAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQG 227
            ++T E+AGSKTRR IYLAFIGLLV+ IA+SF+SS DWRKVAVLGA+L+ L+ QF +EQ 
Sbjct: 180 NKLTKENAGSKTRRYIYLAFIGLLVVAIAESFLSSPDWRKVAVLGAMLIALISQFSYEQR 239

Query: 228 MLSETEK 234
           M SE EK
Sbjct: 240 MASEIEK 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566648|ref|XP_003551542.1| PREDICTED: uncharacterized protein LOC100778806 [Glycine max]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 142/257 (55%), Positives = 177/257 (68%), Gaps = 17/257 (6%)

Query: 1   MIALKAIQTALTPTA-HLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLAR 59
           MIALK++    TPT      +  R   T+ S + LCKS +SES+ +P  GDI+KQELLA+
Sbjct: 1   MIALKSLHPFFTPTNIKYGINRSRCLNTKGSVLCLCKSNESESQ-APQPGDIRKQELLAQ 59

Query: 60  IAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQ 119
           IAMLQ QKVRLTDY DERS YLTQF EEA AEFDKIG+DAL+GLDEAS+ I  NIESQM 
Sbjct: 60  IAMLQTQKVRLTDYFDERSEYLTQFGEEAKAEFDKIGKDALQGLDEASAIITANIESQMV 119

Query: 120 AFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGKAKATEEVKKIKE 169
            FEESAE NR EI+E++ +  E           GLFFK+L ++ PV K+KA EE +KIK+
Sbjct: 120 EFEESAELNRQEIQEHEKELGEFEVQMEDGRNEGLFFKNLRRRTPVDKSKAKEEAEKIKD 179

Query: 170 ITTESAGSKTRRNIYLAFIGLLVIGIADSFISSS-DWRKVAVLGAILVPLLLQFLHEQGM 228
           +  E AGS+TR+  YL FIGLL   I DS  SSS DW+K+AVLGA LV L+ QF++EQ +
Sbjct: 180 VAREKAGSRTRKGFYLLFIGLLTFAIVDSIASSSTDWKKIAVLGATLVALVSQFIYEQNV 239

Query: 229 LSETEKRGHEKPDREKK 245
           +    K    K DR ++
Sbjct: 240 IRNWRK----KKDRHRR 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523257|ref|XP_003530257.1| PREDICTED: uncharacterized protein LOC100802123 [Glycine max]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 173/247 (70%), Gaps = 15/247 (6%)

Query: 1   MIALKAIQTALTPT-AHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLAR 59
           MIALK+I    TP       H  R   T+ S + LCKS  SES+ +P  GDI+KQELLA+
Sbjct: 1   MIALKSIHPFFTPIYIKYNIHRSRCLNTKDSVLCLCKSNQSESQ-APQPGDIRKQELLAQ 59

Query: 60  IAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQ 119
           IAMLQ QKVRL DY DERS YLTQF EEA AEFDKIGEDAL+GLDEAS+RI  NIESQM 
Sbjct: 60  IAMLQTQKVRLMDYFDERSEYLTQFGEEAKAEFDKIGEDALQGLDEASARITANIESQMV 119

Query: 120 AFEESAEENRMEIEENDSK-----------RPERGLFFKSLGQKKPVGKAKATEEVKKIK 168
            FEESAE NR EI+E + +           R E GLFFK+L +K PV KAKA EE +KIK
Sbjct: 120 EFEESAELNRQEIQEREKELDKFEVQMEDGRNE-GLFFKNLRKKAPVDKAKAKEEAEKIK 178

Query: 169 EITTESAGSKTRRNIYLAFIGLLVIGIADSFISSS-DWRKVAVLGAILVPLLLQFLHEQG 227
           ++  E AGS+TR+ IYL FIGLL   I DS  SSS DWRK+AVLGAILV L+ QF++EQ 
Sbjct: 179 DVAREKAGSRTRKGIYLLFIGLLTFAIVDSVASSSTDWRKIAVLGAILVALVSQFIYEQT 238

Query: 228 MLSETEK 234
           M  ET K
Sbjct: 239 MSIETGK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2095299	258	AT3G09050 "AT3G09050" [Arabido	0.983	0.934	0.568	4.1e-65

TAIR|locus:2095299 AT3G09050 "AT3G09050" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 146/257 (56%), Positives = 174/257 (67%)

Query:     1 MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDXXXXXXXX------XGDIKKQ 54
             M  L A QT LTP  H+LF+  R + +R  F+ L KS D               GD ++Q
Sbjct:     2 MNTLHAFQTTLTPNFHVLFNASRHSLSRPQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQ 61

Query:    55 ELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENI 114
             ELLARIAM+Q  KVRLTD+LDERS YLT+FAEEANAEFDK+GEDA+K LDEAS+RI+ENI
Sbjct:    62 ELLARIAMIQTSKVRLTDFLDERSEYLTKFAEEANAEFDKVGEDAMKDLDEASTRILENI 121

Query:   115 ESQMQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGXXXXXXXX 164
             ES+MQAFEESA  NR+EIEEND+K  E           GLFFKSL  KKPV         
Sbjct:   122 ESKMQAFEESAGLNRLEIEENDNKLAEFEEKIQVDRNEGLFFKSLRDKKPVDREQAREET 181

Query:   165 XXXXXXXXXSAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLH 224
                      SAGSK+RRNIYL  IG++V+ IADSF+SS DWRKVA+LGAILVPLL QF++
Sbjct:   182 EKIQEVTKESAGSKSRRNIYLGLIGIVVLAIADSFVSSPDWRKVAILGAILVPLLTQFVY 241

Query:   225 EQGMLSETEKRGHEKPD 241
             EQ +LSE +K    K +
Sbjct:   242 EQTLLSEADKGKENKKE 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       219   0.00092  112 3  11 22  0.40    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.03u 0.11s 22.14t   Elapsed:  00:00:01
  Total cpu time:  22.03u 0.11s 22.14t   Elapsed:  00:00:01
  Start:  Sat May 11 06:55:48 2013   End:  Sat May 11 06:55:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060837 hypothetical protein (255 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
COG0559	297	COG0559, LivH, Branched-chain amino acid ABC-type	0.003
cd06582	272	cd06582, TM_PBP1_LivH_like, Transmembrane subunit	0.003

>gnl|CDD|223633 COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 182 NIYLAFIGLLVIGIADSFIS----SSDWRKVAVLGAILVPLLL 220
           +I  A +G L++G+A+S +S     S+++ V     +++ LL+
Sbjct: 242 SIPGAVLGGLLLGLAESLVSAKYFGSEYKDVVAFLLLILVLLV 284

Length = 297

>gnl|CDD|119324 cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 182 NIYLAFIGLLVIGIADSFIS---SSDWRKVAVLGAILVPLLL 220
           +I  A +G L++G+A+S  +   SS ++       +++ LL+
Sbjct: 225 SIPGAVVGGLLLGLAESLAAAYLSSGYKDAVAFVLLILVLLV 266

LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PF05400	84	FliT: Flagellar protein FliT; InterPro: IPR008622	87.49
PF07784	77	DUF1622: Protein of unknown function (DUF1622); In	82.33

>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins

Probab=87.49  E-value=7.2  Score=27.77  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             hhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 038426           69 RLTDYLDERSAYLTQFAE---EANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEE  134 (245)
Q Consensus        69 RvtdfvdErS~~L~~~Ae---eA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~EiE~  134 (245)
                      +|.+.+++|..++..+.+   .-..++..-..+.+..+=+-...|+..++..++++...+...+.....
T Consensus        12 ~l~~l~~~R~~ll~~l~~~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~~~   80 (84)
T PF05400_consen   12 ELEELLDERQELLERLFEEQAALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKGRKA   80 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488899999999988877   445555566667777777777899999999999999999887765543

Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.

>PF07784 DUF1622: Protein of unknown function (DUF1622); InterPro: IPR012427 This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species

Probab=82.33  E-value=3.4  Score=31.81  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHH
Q 038426          182 NIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILV  216 (245)
Q Consensus       182 nvYl~li~lL~l~Iv~~v~ss~dw~KvA~lg~Ilv  216 (245)
                      .+-+||=++++..|+.++. .|+|..+++||+|.+
T Consensus        31 ~l~lgLEfllaAdIl~Tv~-~pt~~~l~~La~Iv~   64 (77)
T PF07784_consen   31 SLLLGLEFLLAADILRTVI-APTWEDLGILAAIVL   64 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4567788888888888887 899999999999865

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00