Citrus Sinensis ID: 038458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRDRH
ccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccc
cccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccEccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEEccccccHccccccccccccccccccccHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcc
svirpldpgrwlkAEEITAELIAriqpdpfseERRNAVAAYVRRLIIQcfpcqvftfgsvplktylpdrdidlgafsddqtlKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESrilgghhgLISSYALVTLVLYIFHVfngsfagpLEVLYRFLEFFskfdwdnfclslwgpvpisllpdvtaepprkdggvlLLSKSFLDSCRYayadfpggqenqgqpfvskhfnvidplrvnnnlgrsvskgnffRIRTAFTFRAKGLArlldcpnedlyNEVNQFFMNTRDRH
svirpldpgrwlkAEEITAELiariqpdpfseERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENeeknehaefrVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRvnnnlgrsvskgnffriRTAFTFRAKGLARlldcpnedlyNEVNQFFMNTRDRH
SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNffrirtaftfraKGLARLLDCPNEDLYNEVNQFFMNTRDRH
*********RWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLEN****EHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFM******
***RPLD*GRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRD**
SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRDRH
****PLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRDR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRDRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
Q9UTN3 684 Poly(A) RNA polymerase ci yes no 0.515 0.261 0.296 7e-07
G5EFL0 845 Poly(A) RNA polymerase gl yes no 0.711 0.292 0.25 1e-05
P53632584 Poly(A) RNA polymerase pr yes no 0.585 0.347 0.230 0.0003
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 Back     alignment and function desciption
 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 40/219 (18%)

Query: 22  IARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80
           I  I P P     R  + + + + ++Q +P   ++ FGS   K YLP  D+DL   S + 
Sbjct: 249 IDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEH 308

Query: 81  ----TLKDTW--AHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFV---VD 130
               T KD +  AH ++ +               EVQ I  A V IIK  VD      VD
Sbjct: 309 HYRGTKKDMFVLAHHLKKLK-----------LASEVQVITTANVPIIK-FVDPLTKVHVD 356

Query: 131 IAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESR---ILGGHHGLISSYA 187
           I+FNQ GGL T C +  V+  + +    +  +I+IK +    +     LGG    +SSYA
Sbjct: 357 ISFNQPGGLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGG----LSSYA 409

Query: 188 LVTLVLYIFHVFNGSFAGPLE-------VLYRFLEFFSK 219
           +V LV+    +      G +        +L  FLE + K
Sbjct: 410 IVCLVVSFLQLHPRLSTGSMREEDNFGVLLLEFLELYGK 448
Required for 3' polyadenylation of the 5.8S and 25S rRNAs as a prelude ot their degradation in the exosome. Involved in the nucleolar organization to ensure faithful chromosome segregation during mitosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1 SV=1 Back     alignment and function description
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
449443945 1341 PREDICTED: uncharacterized protein LOC10 1.0 0.258 0.832 1e-171
356520288 1331 PREDICTED: uncharacterized protein LOC10 1.0 0.260 0.842 1e-171
356560284 1337 PREDICTED: uncharacterized protein LOC10 1.0 0.259 0.836 1e-169
225454502 1295 PREDICTED: uncharacterized protein LOC10 0.997 0.267 0.812 1e-163
297745424 1229 unnamed protein product [Vitis vinifera] 0.997 0.281 0.812 1e-163
255564741 1334 hypothetical protein RCOM_0719270 [Ricin 1.0 0.260 0.818 1e-160
302143676 1359 unnamed protein product [Vitis vinifera] 1.0 0.255 0.766 1e-159
225462743 1353 PREDICTED: uncharacterized protein LOC10 1.0 0.256 0.766 1e-158
42566126 1303 nucleotidyltransferase [Arabidopsis thal 1.0 0.266 0.778 1e-157
242036527 1333 hypothetical protein SORBIDRAFT_01g04324 0.997 0.259 0.763 1e-154
>gi|449443945|ref|XP_004139736.1| PREDICTED: uncharacterized protein LOC101209112 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/347 (83%), Positives = 315/347 (90%)

Query: 1   SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSV 60
           +V+R LD  RW KAEE TAELIA IQP+P SEERRNAVA YV+RLI++CFPCQVFTFGSV
Sbjct: 26  TVMRMLDSERWSKAEERTAELIACIQPNPPSEERRNAVADYVQRLIMKCFPCQVFTFGSV 85

Query: 61  PLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKII 120
           PLKTYLPD DIDL AFS +Q LK+TWAH VRDMLE+EEKNE+AEFRVKEVQYI+AEVKII
Sbjct: 86  PLKTYLPDGDIDLTAFSKNQNLKETWAHQVRDMLESEEKNENAEFRVKEVQYIKAEVKII 145

Query: 121 KCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHH 180
           KCLV+N VVDI+F+QLGGLCTLCFL+EVDHLIN+NHLFKRSIILIKAWCYYESRILG HH
Sbjct: 146 KCLVENIVVDISFDQLGGLCTLCFLEEVDHLINQNHLFKRSIILIKAWCYYESRILGAHH 205

Query: 181 GLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPD 240
           GLIS+YAL TLVLYIFHVFN SFAGPLEVLYRFLEFFSKFDWDNFC+SLWGPVPIS LPD
Sbjct: 206 GLISTYALETLVLYIFHVFNNSFAGPLEVLYRFLEFFSKFDWDNFCVSLWGPVPISSLPD 265

Query: 241 VTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGR 300
           VTAEPPRKDGG LLLSK FL++C   YA FPGGQENQGQPFVSKHFNVIDPLRVNNNLGR
Sbjct: 266 VTAEPPRKDGGELLLSKLFLEACSAVYAVFPGGQENQGQPFVSKHFNVIDPLRVNNNLGR 325

Query: 301 SVSKGNFFRIRTAFTFRAKGLARLLDCPNEDLYNEVNQFFMNTRDRH 347
           SVSKGNFFRIR+AF F AK LARL +CP ED+  E+NQFF+NT +RH
Sbjct: 326 SVSKGNFFRIRSAFAFGAKRLARLFECPREDILAELNQFFLNTWERH 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356520288|ref|XP_003528795.1| PREDICTED: uncharacterized protein LOC100809742 [Glycine max] Back     alignment and taxonomy information
>gi|356560284|ref|XP_003548423.1| PREDICTED: uncharacterized protein LOC100800527 [Glycine max] Back     alignment and taxonomy information
>gi|225454502|ref|XP_002277075.1| PREDICTED: uncharacterized protein LOC100241322 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745424|emb|CBI40504.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564741|ref|XP_002523365.1| hypothetical protein RCOM_0719270 [Ricinus communis] gi|223537453|gb|EEF39081.1| hypothetical protein RCOM_0719270 [Ricinus communis] Back     alignment and taxonomy information
>gi|302143676|emb|CBI22537.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462743|ref|XP_002268106.1| PREDICTED: uncharacterized protein LOC100248390 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42566126|ref|NP_191728.2| nucleotidyltransferase [Arabidopsis thaliana] gi|332646720|gb|AEE80241.1| nucleotidyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242036527|ref|XP_002465658.1| hypothetical protein SORBIDRAFT_01g043240 [Sorghum bicolor] gi|241919512|gb|EER92656.1| hypothetical protein SORBIDRAFT_01g043240 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
TAIR|locus:2076795 1303 AT3G61690 [Arabidopsis thalian 1.0 0.266 0.752 1.3e-139
TAIR|locus:2081885 829 AT3G51620 "AT3G51620" [Arabido 0.985 0.412 0.537 2.7e-93
TAIR|locus:2078426 603 AT3G56320 [Arabidopsis thalian 0.976 0.562 0.469 5.8e-82
TAIR|locus:2061868 502 AT2G40520 "AT2G40520" [Arabido 0.968 0.669 0.419 7.2e-68
POMBASE|SPAC12G12.13c 684 cid14 "poly(A) polymerase Cid1 0.541 0.274 0.300 3.8e-07
WB|WBGene00014115 845 gld-4 [Caenorhabditis elegans 0.576 0.236 0.255 0.00018
TAIR|locus:2076795 AT3G61690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 262/348 (75%), Positives = 293/348 (84%)

Query:     1 SVIRPLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGS 59
             SV RPLD  RW KAE+ TA+LIA IQP+P SE+RRNAVA+YVRRLI++CFP  Q+F FGS
Sbjct:    29 SVTRPLDAERWAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGS 88

Query:    60 VPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKI 119
             VPLKTYLPD DIDL AFS +Q LKD+WA+LVRDMLE EEKNE+AEF VKEVQYIQAEVKI
Sbjct:    89 VPLKTYLPDGDIDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKI 148

Query:   120 IKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGH 179
             IKCLV+N VVDI+FNQ+GGLCTLCFL+EVDH IN+NHLFKRSIILIKAWCYYESRILG H
Sbjct:   149 IKCLVENIVVDISFNQIGGLCTLCFLEEVDHYINQNHLFKRSIILIKAWCYYESRILGAH 208

Query:   180 HGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLP 239
             HGLIS+YAL TLVLYIF++FN SF+GPLEVLYRFLEFFSKFDW NFCLSLWGPVP+S LP
Sbjct:   209 HGLISTYALETLVLYIFYLFNNSFSGPLEVLYRFLEFFSKFDWQNFCLSLWGPVPVSSLP 268

Query:   240 DVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLG 299
             DVTAEPPR+D G L +S++F  +C   YA     QE QGQPFVSKHFNVIDPLR NNNLG
Sbjct:   269 DVTAEPPRRDVGELRVSEAFYRACSRVYAVNIAPQEIQGQPFVSKHFNVIDPLRENNNLG 328

Query:   300 RSVSKGNXXXXXXXXXXXXKGLARLLDCPNEDLYNEVNQFFMNTRDRH 347
             RSVSKGN            K L RLL+CP E+L +EVNQFFMNT +RH
Sbjct:   329 RSVSKGNFFRIRSAFTLGAKKLTRLLECPKENLIHEVNQFFMNTWERH 376
GO:0005634 "nucleus" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
TAIR|locus:2081885 AT3G51620 "AT3G51620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078426 AT3G56320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061868 AT2G40520 "AT2G40520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC12G12.13c cid14 "poly(A) polymerase Cid14" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00014115 gld-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027014001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 1e-10
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 2e-10
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 37/234 (15%)

Query: 20  ELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSD 78
           E    I P     +RR A+   +R L+ + FP   +  FGS      LP  DIDL   SD
Sbjct: 63  EFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISD 122

Query: 79  DQTLKDTWAHLVRDMLENEEKNEHAEFR--VKEVQYIQ-AEVKIIKCLVDN---FVVDIA 132
            +  K+T                H   +   KEV  +  A V IIK LVD       DI+
Sbjct: 123 PRGYKETRN--------AGSLASHLFKKNLAKEVVVVSTARVPIIK-LVDPQSGLHCDIS 173

Query: 133 FNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLV 192
           FN   G+     +      + E+   +  +++IK W      +     G +SSY +  +V
Sbjct: 174 FNNTNGIVNAKLIRS---YLKEDPRLRPLVLIIKHWL-KRRALNDVATGTLSSYTISCMV 229

Query: 193 LY---------------IFHVFNGSFAGPLEVLY-RFLEFFSK-FDWDNFCLSL 229
           L                +  +        L VL+  F E + K F++    LS+
Sbjct: 230 LSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSI 283

Length = 482
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
COG5260 482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
PTZ00418 593 Poly(A) polymerase; Provisional 100.0
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 100.0
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.95
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.93
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.91
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.88
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.66
TIGR03671 408 cca_archaeal CCA-adding enzyme. 99.66
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.46
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 99.12
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 98.32
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 98.31
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.94
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 97.84
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.8
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 97.61
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.53
COG166997 Predicted nucleotidyltransferases [General functio 97.51
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.5
PRK13746262 aminoglycoside resistance protein; Provisional 96.96
COG1708128 Predicted nucleotidyltransferases [General functio 96.9
KOG3793362 consensus Transcription factor NFAT, subunit NF45 96.82
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 96.68
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 95.2
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 94.99
PF14091152 DUF4269: Domain of unknown function (DUF4269) 94.48
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 93.46
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 92.37
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 91.59
PF10127247 Nuc-transf: Predicted nucleotidyltransferase; Inte 84.47
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 84.42
PF10620213 MdcG: Phosphoribosyl-dephospho-CoA transferase Mdc 83.51
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=363.44  Aligned_cols=269  Identities=25%  Similarity=0.360  Sum_probs=217.1

Q ss_pred             CchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhH
Q 038458            8 PGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTW   86 (347)
Q Consensus         8 ~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~   86 (347)
                      .+.-.-+..++.+|+++|.|+.+|.+.|..++++|+.++++.|| +.+++|||+.|||++|.||||+||..++...+++.
T Consensus        51 ~~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~et~  130 (482)
T COG5260          51 NEESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKETR  130 (482)
T ss_pred             hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCccccccc
Confidence            44455678889999999999999999999999999999999999 99999999999999999999999999764333322


Q ss_pred             H--HHHHHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhccChhhHHH
Q 038458           87 A--HLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRS  161 (347)
Q Consensus        87 ~--~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p~~r~L  161 (347)
                      -  ..+..++.+.        ....+.++ +|||||||+++  +|++|||+|||..|+.|+.++   ..|+..+|++|||
T Consensus       131 ~~~~l~~~l~~~~--------~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~---~~~~~~~P~lrpL  199 (482)
T COG5260         131 NAGSLASHLFKKN--------LAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLI---RSYLKEDPRLRPL  199 (482)
T ss_pred             cHHHHHHHHHHhc--------cCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHH---HHHHhcCcccchH
Confidence            1  2233333332        34466778 99999999997  899999999999999997776   7889999999999


Q ss_pred             HHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcCC------C----------CChHHHHHHHHhccc-cCCCC
Q 038458          162 IILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNGS------F----------AGPLEVLYRFLEFFS-KFDWD  223 (347)
Q Consensus       162 ~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~~------~----------~~p~~lL~~Ff~~Y~-~Fd~~  223 (347)
                      +++||||+  ++|.+| ++.|||+||++++||+.|||.+++.      .          .+.|-||.+||+||| .|+|+
T Consensus       200 vliIKhwl--~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~~~~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~  277 (482)
T COG5260         200 VLIIKHWL--KRRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYS  277 (482)
T ss_pred             HHHHHHHH--HHHhhcccccCcchhhhhHHHHHHHHHhCCccccccccccchhhccccccccchHHHHHHHHhccccChh
Confidence            99999998  677776 6999999999999999999999731      1          333678999999999 99999


Q ss_pred             CeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCC-CCCCCccccc
Q 038458          224 NFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPL-RVNNNLGRSV  302 (347)
Q Consensus       224 ~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf-~~~~N~~rsv  302 (347)
                      ..+++++++ .                  .+++|.       .     +|   +-.+..+..+|||||+ ++++++++. 
T Consensus       278 ~~~~si~~g-~------------------~~~~K~-------e-----~g---~~~~~~p~~LsiqdP~td~n~~~~a~-  322 (482)
T COG5260         278 LVVLSINSG-D------------------FYLPKY-------E-----KG---WLKPSKPNSLSIQDPGTDRNNDISAV-  322 (482)
T ss_pred             heEEEecCC-c------------------eeeehh-------h-----cc---cccccCCCcEeecCCCCCcccccccc-
Confidence            999999764 1                  111110       0     00   1111112579999999 898888886 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHh
Q 038458          303 SKGNFFRIRTAFTFRAKGLARLL  325 (347)
Q Consensus       303 ~~~~~~~I~~~F~~a~~~l~~~~  325 (347)
                       ..++..|+.+|.+|.++|..-+
T Consensus       323 -s~~ik~i~~~F~~aF~lls~~~  344 (482)
T COG5260         323 -SFNIKDIKAAFIRAFELLSNKL  344 (482)
T ss_pred             -cchHHHHHHHHHHHHHHHhhhc
Confidence             4578999999999999988665

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 1e-04
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 36/243 (14%)
Query: 11  WLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDR 69
           WL  E    + +A I P     E RN   + +R  + Q +P   +  FGS     YLP  
Sbjct: 20  WLTFE--IKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGS 77
Query: 70  DID------LGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCL 123
           DID      LG       L    +HL +  L  E +   A+ RV  +++++    I    
Sbjct: 78  DIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVV-AKARVPIIKFVEPHSGI---- 132
Query: 124 VDNFVVDIAFNQLGGLCTLCFLDEVDHLINE---NHLFKRSIILIKAWCYYESRILGGHH 180
                + ++F +  G+       E   LI E   +    R ++LI     +  R+   H 
Sbjct: 133 ----HIAVSFERTNGI-------EAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHT 181
Query: 181 GLISSYALVTLVLYIFHVFNGSFAGPLE-------VLYRFLEFFSK-FDWDNFCLSLWGP 232
           G +  ++++ LV    H+        ++       +L  F E + K F +D+  L     
Sbjct: 182 GGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDG 241
Query: 233 VPI 235
            P+
Sbjct: 242 YPV 244

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 4e-30
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 4e-30
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 3e-27
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 2e-26
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 2e-24
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 2e-21
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 1e-18
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 1e-18
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 8e-05
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
 Score =  119 bits (298), Expect = 4e-30
 Identities = 55/375 (14%), Positives = 101/375 (26%), Gaps = 91/375 (24%)

Query: 15  EEITAELIARIQ-----PDPFSEERRNAVAAYVRRLIIQC-----------------FPC 52
            ++   LI  ++             R  V   ++ L  +                     
Sbjct: 23  NKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGG 82

Query: 53  QVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQY 112
           ++FT+GS  L  + P  DID          ++ +  +   +L   ++       + E+  
Sbjct: 83  KIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKE-------LDEIAP 135

Query: 113 IQ-AEVKIIKCLVDNFVVDIAFNQLGGLCTLCFL-------------------------D 146
           +  A V IIK       +D+   +L        L                         D
Sbjct: 136 VPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTD 195

Query: 147 EVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGP 206
           E+  L+ + ++F+ ++  IK W      +     G     A   LV  I  ++    A  
Sbjct: 196 EILELVPKPNVFRIALRAIKLWA-QRRAVYANIFGFPGGVAWAMLVARICQLYP--NACS 252

Query: 207 LEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYA 266
             +L RF    S+++W         PV                          L      
Sbjct: 253 AVILNRFFIILSEWNWPQ-------PV-------------------------ILKPIEDG 280

Query: 267 YADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLD 326
                           S    VI P   +     ++++     I   F    +    +  
Sbjct: 281 PLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340

Query: 327 CPNE-DLYNEVNQFF 340
                    E N FF
Sbjct: 341 NKKSWANLFEKNDFF 355
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Length = 437 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.57
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.46
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.16
1no5_A114 Hypothetical protein HI0073; structural genomics, 98.05
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.95
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.68
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.65
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.0
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 96.75
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 96.44
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 92.53
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 87.06
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 84.37
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-56  Score=433.38  Aligned_cols=282  Identities=22%  Similarity=0.299  Sum_probs=219.1

Q ss_pred             CCCchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchh
Q 038458            6 LDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKD   84 (347)
Q Consensus         6 ~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~   84 (347)
                      ..|.....+++.+.+++++++||++|.+.|+.++++|+++|++.|| ++|++|||++||+++|+||||+||..+.....+
T Consensus         8 ~~p~~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~   87 (349)
T 4fh3_A            8 KVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSD   87 (349)
T ss_dssp             ----CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHH
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChH
Confidence            3467778888899999999999999999999999999999999999 999999999999999999999999998754444


Q ss_pred             hHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee-------cCeeEEEeecCCCccchhhhHHHHHHHhccCh
Q 038458           85 TWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV-------DNFVVDIAFNQLGGLCTLCFLDEVDHLINENH  156 (347)
Q Consensus        85 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~-------~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p  156 (347)
                      .+...+...+...         ..+++.| +||||||||++       +|+.||||+||.+|+.++.++   ..++..+|
T Consensus        88 ~~~~~~~~~~~~~---------~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll---~~~~~~~~  155 (349)
T 4fh3_A           88 TIALQFYEELIAE---------GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLL---SSYTKLDA  155 (349)
T ss_dssp             HHHHHHHHHHHHT---------TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHH---HHHHHHCT
T ss_pred             HHHHHHHHHHHhh---------cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHH---HHHhhcCH
Confidence            4444443333322         1244567 99999999996       479999999999999998887   66788999


Q ss_pred             hhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcC-----C----------------------------
Q 038458          157 LFKRSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNG-----S----------------------------  202 (347)
Q Consensus       157 ~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~-----~----------------------------  202 (347)
                      ++|+|+++||+||  ++|++| ++.||||||+|++|||+|||+...     .                            
T Consensus       156 ~~r~l~~~iK~wa--k~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~  233 (349)
T 4fh3_A          156 RLKPMVLLVKHWA--KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPP  233 (349)
T ss_dssp             THHHHHHHHHHHH--HHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCC
T ss_pred             HHHHHHHHHHHHH--HHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhccc
Confidence            9999999999998  788887 699999999999999999996421     0                            


Q ss_pred             ---CCChHHHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCC
Q 038458          203 ---FAGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQG  278 (347)
Q Consensus       203 ---~~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (347)
                         ..+.++||.+||+||| +|||.+.+||++++...                   ++++...    .............
T Consensus       234 ~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~-------------------~~k~~k~----~~~~~~~~~~~~~  290 (349)
T 4fh3_A          234 SQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGY-------------------LTKQEKG----WTSATEHTGSADQ  290 (349)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCC-------------------CBHHHHT----CC-----------
T ss_pred             ccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCc-------------------cchHHhc----ccccccccCcccc
Confidence               1245899999999999 89999999999765321                   1111000    0000000000011


Q ss_pred             CCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHH
Q 038458          279 QPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARL  324 (347)
Q Consensus       279 ~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~  324 (347)
                      .......|+|||||+++||+||+|+..++.+|++||++|+++|.+.
T Consensus       291 ~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~  336 (349)
T 4fh3_A          291 IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSR  336 (349)
T ss_dssp             ----CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence            1122357999999999999999999999999999999999999754
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 8e-20
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 2e-16
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 5e-15
d1r89a2142 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N 4e-06
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (207), Expect = 8e-20
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 32/172 (18%)

Query: 16  EITAELIARIQ-----PDPFSEERRNAVAAYVRRLIIQCFP-----------------CQ 53
           ++   LI  ++             R  V   ++ L  +                     +
Sbjct: 20  KLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 79

Query: 54  VFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI 113
           +FT+GS  L  + P  DID          ++ +  +   +L   ++       + E+  +
Sbjct: 80  IFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKE-------LDEIAPV 132

Query: 114 Q-AEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDH--LINENHLFKRSI 162
             A V IIK       + +   +L        L   D   L N +    R++
Sbjct: 133 PDAFVPIIKIKFSGISIALICARLDQPQVPLSLTLSDKNLLRNLDEKDLRAL 184
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.96
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.92
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.91
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.71
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.7
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.85
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.71
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 98.4
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.27
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.54
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 97.5
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 97.49
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 97.4
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 96.86
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 93.18
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 91.55
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 89.03
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 86.68
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=1.5e-29  Score=220.34  Aligned_cols=139  Identities=22%  Similarity=0.322  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcCCC---------------------------CChH
Q 038458          156 HLFKRSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNGSF---------------------------AGPL  207 (347)
Q Consensus       156 p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~~~---------------------------~~p~  207 (347)
                      |++|+|+++||+||  ++|++| ++.||||||||++|||+|||+.+...                           .+.+
T Consensus         2 P~~R~l~~~vK~Wa--k~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~   79 (183)
T d2b4va1           2 VAARHTAMAVKAWG--KATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELG   79 (183)
T ss_dssp             TTHHHHHHHHHHHH--HTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHH
T ss_pred             cceeeHHHHHHHHH--HHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHH
Confidence            78999999999999  889987 69999999999999999999864210                           1237


Q ss_pred             HHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcce
Q 038458          208 EVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHF  286 (347)
Q Consensus       208 ~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  286 (347)
                      +||.+||+||| +|||++.+||++.+....                    +..       ..+.   ............|
T Consensus        80 ~Ll~~FF~~Y~~~fd~~~~~Isi~~g~~~~--------------------k~~-------~~~~---~~~~~~~~~~~~l  129 (183)
T d2b4va1          80 RLLHGFFIFYAHHFDYEREVVSLNRNRRSY--------------------RSD-------IGWN---FPQNKKGTFSYNF  129 (183)
T ss_dssp             HHHHHHHHHHHHSSCTTTEEBCSSSSSCEE--------------------HHH-------HTCC---CGGGEETTEECSS
T ss_pred             HHHHHHHHHhccccCHHHceeeeccCCccc--------------------hhh-------hhcc---ccccCCCCCCcce
Confidence            89999999999 899999999987543322                    100       0000   0001112233569


Q ss_pred             EEeCCCCC----CCCcccccCcchHHHHHHHHHHHHHHHHHHhc
Q 038458          287 NVIDPLRV----NNNLGRSVSKGNFFRIRTAFTFRAKGLARLLD  326 (347)
Q Consensus       287 ~IeDPf~~----~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~~  326 (347)
                      +|||||++    ++|+||+|+..++++|+++|++|++.|.+.+.
T Consensus       130 ~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~~f~~a~~~l~~~~~  173 (183)
T d2b4va1         130 CIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP  173 (183)
T ss_dssp             CBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             EEeCCCccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999986    56777888878899999999999999998763
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure