Citrus Sinensis ID: 038478

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRKSRKMGHGRR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHccccccccccccEEEEEEEcccccEEEEEEEEcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHEEEEEccccccEEEEEEEEccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccEEEEEEEEcccccccccccccHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
FLIKSLFNLLATVCGVEKLQERVLRNacdidtlhedvvMRDFYMKdvgkcakifvpvnhgfchWYLLIIFIpemraeiwdpnpstltskmFNSEAKTILRSLDKILNGDARKVLaagtkfehfTVLQVTEFavipesynYGVLILLMMQrggkwlqnptfqcdfdtERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRksrkmghgrr
Flexible Loop (DISEMBL)
FLIKSLFNLLATVCGVEKLQERVLRnacdidtlhedVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKylknlrksrkmghgrr
Low Complexity Region (SEG)
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRKSRKMGHGRR
Disordered region (IsUnstruct)
*LIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYL**************
Disordered Region (DISOPRED)
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNP***********AKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRK*********
Disordered Region (DISEMBL)
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLR**********
Disordered Region (DISPRO)
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRK*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FLIKSLFNLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRKSRKMGHGRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
224132816	191	predicted protein [Populus trichocarpa]	0.758	0.905	0.278	1e-08
224115366	191	predicted protein [Populus trichocarpa]	0.666	0.795	0.283	1e-06

>gi|224132816|ref|XP_002327887.1| predicted protein [Populus trichocarpa] gi|222837296|gb|EEE75675.1| predicted protein [Populus trichocarpa]

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 3/176 (1%)

Query: 38  VMRDFYMKDVGKCAKIFVPV-NHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAK 96
           + R+ YM  +  C K++VPV +    H+YL ++ + +   EIWD    +  S + +    
Sbjct: 1   MFRENYMSALFSCEKMYVPVFDKERRHFYLFVLHMKKQVVEIWDSLAKSSGSSV-DKRLP 59

Query: 97  TILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQ 156
            +L  LD +   D ++    G  F  F+V +          Y+ GV ++  M    +  Q
Sbjct: 60  NMLAILDILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQ 119

Query: 157 NPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMANKITSELMCAAVENK 212
            P F  D DTER  +VL+LL   VNS + ++  K+  Y + +  T++ +   V+NK
Sbjct: 120 -PDFVFDSDTERLDVVLRLLDGNVNSCRNELAAKAEAYFLRSSGTNDSLRIYVQNK 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115366|ref|XP_002332178.1| predicted protein [Populus trichocarpa] gi|222832426|gb|EEE70903.1| predicted protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 38  VMRDFYMKDVGKCAKIFVPV-NHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAK 96
           + R+ YM  +  C K++VPV +    H YL ++ + +   EIWD    +  S + +    
Sbjct: 1   MFRENYMSALFSCEKMYVPVFDKERRHLYLFVLHMKKQVVEIWDSLAKSSGSSV-DKRLP 59

Query: 97  TILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQ 156
            +L  LD +   D ++    G  F  F+V +          Y+ GV ++  M    +  Q
Sbjct: 60  NMLAILDILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQ 119

Query: 157 NPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKS 191
            P F  D DTER  +VL+LL   VNS + ++  K+
Sbjct: 120 -PDFVFDSDTERLDVVLRLLDGNVNSCRNELAAKA 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0064012001 hypothetical protein (191 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	6e-04

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 39  MRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSK 89
            R    K +     I++P+N    HW LLII +P+    I D   S  T  
Sbjct: 72  TRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSLISLHTEA 122

This domain contains the catalytic triad Cys-His-Asn. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.98
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.95
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.9
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.88
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	98.09
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	96.53
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	96.07
PRK11836	403	deubiquitinase; Provisional	95.6
PRK14848	317	deubiquitinase SseL; Provisional	94.49
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	82.5

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-35  Score=279.68  Aligned_cols=137  Identities=20%  Similarity=0.313  Sum_probs=122.9

Q ss_pred             hHhhhHHHhhccccccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEE
Q 038478           16 VEKLQERVLRNACDIDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEI   78 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~y   78 (228)
                      .++|.||.=+.|- +.+||   +||+||+.                 |||+||+||||||. ++||||+|||+++|+|+|
T Consensus       343 m~ll~ers~~~~~-yp~~h---~FnTFFy~kL~~~gy~~VkRWTk~v~if~~d~i~vPIH~-~vHW~l~vid~r~k~i~y  417 (511)
T KOG0778|consen  343 MELLKERSKKDSK-YPKVH---AFNTFFYTKLVGRGYAGVKRWTKKVDIFDKDIIFVPIHL-GVHWCLAVIDLREKTIEY  417 (511)
T ss_pred             HHHHHhhccccCC-CceEE---EEechhhhhhhhcchHHHHhHhhccCccccceeEeeeec-CceEEEEEEEcccceEEE
Confidence            6899999999888 99999   99999998                 99999999999998 699999999999999999


Q ss_pred             EcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHhccccCCC
Q 038478           79 WDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNP  158 (228)
Q Consensus        79 yDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p  158 (228)
                      |||+++.++.         +..+|.+|+.+|+.++....+|+++|.++.+.++|||.||||||||||+|++.+..  +.|
T Consensus       418 ~DS~~~~~nr---------~~~aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~--~~p  486 (511)
T KOG0778|consen  418 YDSLGGGPNR---------ICDALAKYLQDESRDKSKKDFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISR--DVP  486 (511)
T ss_pred             eeccCCCCcc---------hHHHHHHHHHHHHhhhhcCCCCccchhhhhhhccccccCCCccceEEeeechhhcc--CCC
Confidence            9999976543         34677889999999999999999999999999999999999999999999999987  565


Q ss_pred             CcccCcchhHHHH
Q 038478          159 TFQCDFDTERSQL  171 (228)
Q Consensus       159 ~f~~~~~~~~~~~  171 (228)
                         ..|+|..|=-
T Consensus       487 ---~~ftq~dmp~  496 (511)
T KOG0778|consen  487 ---LTFTQQDMPY  496 (511)
T ss_pred             ---cccChhhhHH
Confidence               6777766543

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.98  E-value=1.9e-32  Score=261.94  Aligned_cols=147  Identities=19%  Similarity=0.271  Sum_probs=126.6

Q ss_pred             hhHhhhHHHhhccccccchhhhhhhhhhhcc-------------------------cccccceEEEeeeCCCcceeeeEe
Q 038478           15 GVEKLQERVLRNACDIDTLHEDVVMRDFYMK-------------------------DVGKCAKIFVPVNHGFCHWYLLII   69 (228)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------------------DLfscdkIFVPVN~ggsHWsL~VI   69 (228)
                      -+++|+||..++|.++.+||   +|+++|+.                         +|+++|+||||||. ++||||+||
T Consensus       312 Ym~LL~er~~~~p~~~~k~h---~FNTFFytkL~~~~~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~-n~HWsLaVI  387 (490)
T PLN03189        312 YLELLKEREAREPKKFLKCH---FFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQ-EIHWTLAVI  387 (490)
T ss_pred             HHHHHHHhhhcCcccccceE---EEehHHHHHHhhcCCcCChHHHHHHhhhcccccccccCceEEeeeec-CCeeEEEEE
Confidence            46789999999999999999   99999942                         58899999999996 499999999


Q ss_pred             eeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHH
Q 038478           70 FIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQ  149 (228)
Q Consensus        70 d~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae  149 (228)
                      |+++++|+|||||++.+.         .++..|..|+.++.+.+.+..++++.|....++++|||+||||||||||+||+
T Consensus       388 d~k~k~I~yyDSLgg~~~---------~vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE  458 (490)
T PLN03189        388 NKKDQKFQYLDSLKGRDP---------KILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYID  458 (490)
T ss_pred             EcCCCeEEEEeCCCCCCH---------HHHHHHHHHHHHHHhhhcCCCcchhcceeccCCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999998643         35778888999998888877888899987777899999999999999999999


Q ss_pred             HhccccCCCCcccCcchhHHHHHHHHHHHH
Q 038478          150 RGGKWLQNPTFQCDFDTERSQLVLQLLTSI  179 (228)
Q Consensus       150 ~~~~w~~~p~f~~~~~~~~~~~v~~~v~~~  179 (228)
                      .++.  +.|   ..|+|+.|..-+......
T Consensus       459 ~~Sr--G~~---LtFSQeDMp~fRrRma~E  483 (490)
T PLN03189        459 FYSR--GLG---LCFGQEHMPYFRLRTAKE  483 (490)
T ss_pred             HHcC--CCC---CCcChhhhHHHHHHHHHH
Confidence            9866  333   468999988877766443

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.95  E-value=1.7e-28  Score=215.09  Aligned_cols=126  Identities=18%  Similarity=0.305  Sum_probs=103.7

Q ss_pred             cccccceEEEeee--------CCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcC
Q 038478           46 DVGKCAKIFVPVN--------HGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAG  117 (228)
Q Consensus        46 DLfscdkIFVPVN--------~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~  117 (228)
                      ++.+|+.||+|||        .||+||||+|+++++++|+||||++++|+..     ++.+++.+..+++.+..+     
T Consensus        84 ~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~-----a~~l~~kl~~ll~~~~~~-----  153 (223)
T KOG3246|consen   84 DLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKD-----AKSLMKKLRALLKKKFAK-----  153 (223)
T ss_pred             hcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHH-----HHHHHHHHHHHHhhhhhh-----
Confidence            6899999999999        6889999999999999999999999999865     788888888888642111     


Q ss_pred             CcccceeeccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038478          118 TKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKSRDYNMA  197 (228)
Q Consensus       118 ~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v~~~V~~mr~evl~~i~~l~~~  197 (228)
                              .....+|||+||||||+|||++++.+++|........        .+..+++..++.+|+|++++|..|...
T Consensus       154 --------~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~--------~~~~~~~~~i~~lr~~l~~LI~slg~~  217 (223)
T KOG3246|consen  154 --------RVECKCLQQQNGYDCGLHVCCNTRVLAERLLRCPYAT--------SSQLLVVDLIKALREELLDLIQSLGSI  217 (223)
T ss_pred             --------cccccChhhhcCCchhHHHHHHHHHHHHHHhcccccc--------ccchhhHHHHHHHHHHHHHHHHHhCcc
Confidence                    1134679999999999999999999999877532211        344456999999999999999988644

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.90  E-value=2.9e-23  Score=171.82  Aligned_cols=105  Identities=23%  Similarity=0.389  Sum_probs=81.5

Q ss_pred             ccccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCccccee
Q 038478           45 KDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFT  124 (228)
Q Consensus        45 ~DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~  124 (228)
                      ++++++|.||+|||.++.||+|+|||.+++++.||||+++.+.    .......+..+..++.....+......+.+.|.
T Consensus        78 ~~l~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  153 (216)
T PF02902_consen   78 KNLFDKDYIFIPININNNHWVLLVIDLPKKRIYVYDSLGSSNN----DKRYKRVIENIIPFLKREYKKKEGRDPDKSPFK  153 (216)
T ss_dssp             STGGGSSEEEEEEEETTTEEEEEEEETTTTEEEEE-TTSTSSH-----HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTCE
T ss_pred             ccccccCEEEEEEechhhccceeEEcccccEEEEEeccccccc----cccchhhhhhhhhhhhhccccccccccccceee
Confidence            4889999999999987899999999999999999999999765    122344555556666655545444455667777


Q ss_pred             eccCCcCCCCCCCCchHHHHHHHHHHhcc
Q 038478          125 VLQVTEFAVIPESYNYGVLILLMMQRGGK  153 (228)
Q Consensus       125 v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~  153 (228)
                      .....++|||+||+|||||||+||+.+..
T Consensus       154 ~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~  182 (216)
T PF02902_consen  154 IVRPPNVPQQPNGYDCGVYVLKFMECLLE  182 (216)
T ss_dssp             EEEECTS-SSSSSSCHHHHHHHHHHHHHC
T ss_pred             ecccccccCCCCCCCcHHHHHHHHHHHHh
Confidence            77777999999999999999999998855

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.4e-23  Score=200.57  Aligned_cols=107  Identities=19%  Similarity=0.305  Sum_probs=86.9

Q ss_pred             ccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccch
Q 038478           30 IDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFN   92 (228)
Q Consensus        30 ~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~   92 (228)
                      -...|   .|++||+-                 |||+.++||||||. ..||+|+|||.+++.|.|||||++...     
T Consensus       419 ~~~vh---~FnTFFYT~LsrrGy~gVrrW~kk~dif~~k~I~iPIni-~~HW~l~II~~~~~~i~~~DSLan~~~-----  489 (578)
T COG5160         419 REQVH---LFNTFFYTKLSRRGYSGVRRWTKKTDIFSKKYIFIPINI-SYHWFLAIIDNPKKNILYFDSLANTHD-----  489 (578)
T ss_pred             ccceE---EeehhhHHHHHHHHhHHHHHHHhccCccccceEEEEecc-cceEEEEEeecCcceeEEecccccCcH-----
Confidence            34457   89999997                 99999999999997 589999999999999999999999753     


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHhcc
Q 038478           93 SEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGK  153 (228)
Q Consensus        93 ~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~  153 (228)
                          .+++.|..|+-+|.+...++..    |..-...++|||+||+|||||||++++...+
T Consensus       490 ----~v~~~L~~Y~ldE~k~~~~k~~----~~~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~  542 (578)
T COG5160         490 ----PVLEFLRSYLLDEYKIQHDKDP----QIKMKHCKVPQQRNGSDCGVFVCMFIRYFLE  542 (578)
T ss_pred             ----HHHHHHHHHHHHHHhcccCCch----hhhhhcCCCCCCCCCCccceEEEEeeeeccc
Confidence                3678888888887555443332    2222345899999999999999999987744

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.8e-06  Score=85.85  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             cccccceEEEeeeCCCcceeeeEeeeCCCeEE------EEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhh----
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAE------IWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLA----  115 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~keK~f~------yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~----  115 (228)
                      |++..++||+|+|+ ..||.|+++..+....+      +++++.......+    +-.+..    .+..+......    
T Consensus       434 d~~~k~yi~~P~~E-~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~  504 (595)
T KOG0779|consen  434 DLFNKDYVFVPTHE-RFHWKLAIICNPDLETETPRPRLELLILKLSADFPI----VENILD----FMKVASIYNNELIVT  504 (595)
T ss_pred             ccccceeEEecCch-HhhhhccccccCccccCccccchhhhhhccccccch----hhhhhh----hhhhcccccCccccc
Confidence            99999999999995 49999999999866544      5666655444331    112222    22221111110    


Q ss_pred             --cCCcccceee------ccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHHHHHHHHHHHHH
Q 038478          116 --AGTKFEHFTV------LQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKV  187 (228)
Q Consensus       116 --~~~d~~~f~v------~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v~~~V~~mr~ev  187 (228)
                        .+.+..-+..      ..+.. |||.|..|||+|++.|+++.=   .+|.....--+.-..-+....+..-..+|.++
T Consensus       505 ~~~~~~~~~~~~~~~~~s~~v~~-p~q~n~~dcG~~~~~~v~~f~---e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~  580 (595)
T KOG0779|consen  505 EDLELEEELPRRLPRGKSETVRE-PQQNNDVDCGSFVLEFVERFI---EDAPERFNIEDEGTINLEWFPPKEILKFRDEI  580 (595)
T ss_pred             ccccccccccccCcccccccccc-cCccCcccchhhHHHHHHHhh---hChhhhcccccccccccccCCchHHhhhhhhh
Confidence              0111111110      11223 899999999999999999873   34332221111111111222377788899999


Q ss_pred             HHHHHHHHHhcccc
Q 038478          188 MEKSRDYNMANKIT  201 (228)
Q Consensus       188 l~~i~~l~~~~~~~  201 (228)
                      =.+++.+......+
T Consensus       581 r~~~~~l~~~~~~~  594 (595)
T KOG0779|consen  581 RNLGRKLFTSQSSE  594 (595)
T ss_pred             hccccccccccCCC
Confidence            88888877665543

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.53  E-value=0.0092  Score=52.06  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHH-HHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCC
Q 038478           59 HGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILR-SLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPES  137 (228)
Q Consensus        59 ~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~-~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NG  137 (228)
                      .||+||--.+.|-+.++++.+|.+|=+      +.+++++-. ..+.++....-.   ...|- =.+........|=+++
T Consensus        31 tGGvHWlA~Aw~P~s~t~YmFDPfGfs------d~~L~qiY~FeYe~llrRSAL~---~~~dR-Cv~LvkstqtVQ~p~S  100 (183)
T PF00770_consen   31 TGGVHWLAFAWDPRSRTFYMFDPFGFS------DQKLKQIYQFEYEGLLRRSALS---STPDR-CVTLVKSTQTVQCPCS  100 (183)
T ss_dssp             T--S-EEEEEEETTTTEEEEE-TT---------HHHHHHHH----HHHHHHHHHH---H-TTS-EEEEEEE-EE-S-TT-
T ss_pred             cCceeEEEEEecCCcceEEEeCCCCCC------HHHHHHHHhhhHHHHHHHHhhc---CCCCc-eEEEEeccceeeccCc
Confidence            799999999999999999999999986      556666654 223333222111   01110 0112233455677799


Q ss_pred             CchHHHHHHHHHHhccccCCC
Q 038478          138 YNYGVLILLMMQRGGKWLQNP  158 (228)
Q Consensus       138 yDCGVFVlk~ae~~~~w~~~p  158 (228)
                      --||.|-|+|.-..-.|-.+|
T Consensus       101 aaCGLFC~lFL~aF~~~p~~p  121 (183)
T PF00770_consen  101 AACGLFCCLFLHAFVHYPDNP  121 (183)
T ss_dssp             --HHHHHHHHHHHHHH-TTS-
T ss_pred             hhHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999998887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.07  E-value=0.012  Score=56.79  Aligned_cols=95  Identities=12%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             cceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCc------c-------c---hhH---H---HHHHHHHHHHHh
Q 038478           50 CAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSK------M-------F---NSE---A---KTILRSLDKILN  107 (228)
Q Consensus        50 cdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~------~-------~---~~~---a---~~vl~~L~~yl~  107 (228)
                      +..+.+|.. =.+||.++|+|.+++-+..|||-|..+...      +       +   +..   +   .-=+..|-+++.
T Consensus       231 ~RyvmFgfc-Y~~Hwkc~IfDk~~~~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~n~dIDVLfrfF~  309 (423)
T PF03290_consen  231 KRYVMFGFC-YMSHWKCCIFDKEKKIVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNENCDIDVLFRFFE  309 (423)
T ss_pred             ccEEEeeee-ehhcceEEEEeccccEEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccccCchHHHHHHHH
Confidence            344899997 458999999999999999999988754320      0       0   000   0   000123444554


Q ss_pred             hhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHhccccCCC
Q 038478          108 GDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNP  158 (228)
Q Consensus       108 de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p  158 (228)
                      +....        .-..+   ..-.-|--..|||||.+-||-.+..  ..|
T Consensus       310 d~f~~--------~~gci---NvevnQl~eseCGMF~~iFm~~c~~--~pp  347 (423)
T PF03290_consen  310 DSFGV--------KYGCI---NVEVNQLLESECGMFISIFMILCTL--TPP  347 (423)
T ss_pred             hhccc--------ceeEE---EhhhhhhcccccchHHHHHHHHHHc--cCc
Confidence            43211        11111   1124588899999999999999876  555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PRK11836 deubiquitinase; Provisional

Probab=95.60  E-value=0.053  Score=51.23  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=62.1

Q ss_pred             cccccceEEEeeeCCCcceeeeEeee--------CCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcC
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFI--------PEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAG  117 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~--------keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~  117 (228)
                      .+.-.+.=+||||- |.||-|+++..        .+-+..+|.|+..-++..  ....+++.+.....+..+.....-++
T Consensus       215 ~~~~k~~elFpINt-g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~--~~t~q~ii~a~~~~~~~~~~~~~ik~  291 (403)
T PRK11836        215 PSWPKEVQLFPINT-GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDK--ENSLKRVINSFNSELMGEMSNNNIKV  291 (403)
T ss_pred             CCCcccceEEEecC-CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccch--hhHHHHHHHhhhhhhhhhcchhhhcc
Confidence            44457778999995 58999998753        234566888887776653  23356676665444443332211111


Q ss_pred             CcccceeeccCCcCCCCCCCCchHHHHHHHHH-Hhcc
Q 038478          118 TKFEHFTVLQVTEFAVIPESYNYGVLILLMMQ-RGGK  153 (228)
Q Consensus       118 ~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae-~~~~  153 (228)
                      . .+.=+|.+.+-=-||.=..-||.|||+.++ .++.
T Consensus       292 ~-~~e~ei~fie~dLQq~vpngCGlFv~~a~Qe~i~q  327 (403)
T PRK11836        292 H-LTEPEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQ  327 (403)
T ss_pred             c-ccCCceEEEechhhhcCCCccceehHHHHHHHHHH
Confidence            1 111112333422566667789999999999 6665

>PRK14848 deubiquitinase SseL; Provisional

Probab=94.49  E-value=0.11  Score=48.21  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             EEEeeeCCCcceeeeEeeeC--CCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCc
Q 038478           53 IFVPVNHGFCHWYLLIIFIP--EMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTE  130 (228)
Q Consensus        53 IFVPVN~ggsHWsL~VId~k--eK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~  130 (228)
                      =.||||- |.||-|+.+..-  +-+..+|.|+..-+...     .+++.+. .+..+      .....|+     .+.+-
T Consensus       191 evF~INt-g~HWil~~~~Ki~~kiKC~iFNs~~~l~eNs-----~~~ii~~-ak~ag------~~~e~di-----~fIe~  252 (317)
T PRK14848        191 EVFLINT-GDHWLLCLFYKLAEKIKCLIFNTYYDLNENT-----KQEIIEA-AKIAG------ISENEDV-----NFIET  252 (317)
T ss_pred             eEEEecC-CCcEEEEEhHHhhhhceEEEeecHhhhhhhH-----HHHHHHH-HHhhC------cccCCce-----EEeeh
Confidence            3499995 589999988633  23456888887765543     3444432 11111      0112222     23332


Q ss_pred             CCCCCCCCchHHHHHHHHHHhcc
Q 038478          131 FAVIPESYNYGVLILLMMQRGGK  153 (228)
Q Consensus       131 iPqQ~NGyDCGVFVlk~ae~~~~  153 (228)
                      =-||.=..-||.|||.+++.+.+
T Consensus       253 nLQqnVpngCGlFv~~aIq~l~~  275 (317)
T PRK14848        253 NLQNNVPNGCGLFCYHTIQLLSN  275 (317)
T ss_pred             hhhhhCCCcchHHHHHHHHHHHh
Confidence            25666667799999999998865

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=82.50  E-value=4.8  Score=34.67  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             eEEEeeeCCCcceeeeEeeeC-----CCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeec
Q 038478           52 KIFVPVNHGFCHWYLLIIFIP-----EMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVL  126 (228)
Q Consensus        52 kIFVPVN~ggsHWsL~VId~k-----eK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~  126 (228)
                      +.+||+  ++.++.-+++|.+     +-.+..++|-.-.+...    .    +........+. .++......+   .  
T Consensus        73 R~Iv~~--~~~~~H~~a~Dvr~~~~~k~SlI~~Epa~~~~~~~----~----l~~~~~~~~~~-~~~~~~~~~~---~--  136 (177)
T PF03421_consen   73 RAIVNL--GGDGIHHVALDVRHTPNGKPSLIVFEPASFYGMKP----A----LAGYTKLAEEA-RQKLLPNAKF---A--  136 (177)
T ss_pred             EEEEeC--CCCCCcEEEEEEeecCCCCceEEEEccccccCCcc----h----hhhHHHHHHHH-HhccCCCcEE---E--
Confidence            477885  4466667777776     44566799876544321    1    11111112121 1112223332   2  


Q ss_pred             cCCcCCCCCCCCchHHHHHHHHHHh
Q 038478          127 QVTEFAVIPESYNYGVLILLMMQRG  151 (228)
Q Consensus       127 ~~~~iPqQ~NGyDCGVFVlk~ae~~  151 (228)
                       +-++..|...+|||+|.+-+|.-.
T Consensus       137 -~ie~diQkS~~dC~IFsLs~AkK~  160 (177)
T PF03421_consen  137 -VIEMDIQKSPSDCGIFSLSLAKKM  160 (177)
T ss_pred             -EEecccccCcCcchhhHHHHHHHH
Confidence             335689999999999999998765

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	4e-04

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 17/143 (11%)

Query: 39  MRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTI 98
                   + K  KIF P+N    HW L II + +      D   +       N+ +  I
Sbjct: 90  WMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNG-----PNAMSFAI 144

Query: 99  LRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNP 158
           L  L K +  +++  +       H    Q          Y+ G+ + +          + 
Sbjct: 145 LTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNG------YDCGIYVCMNTLY---GSADA 195

Query: 159 TF---QCDFDTERSQLVLQLLTS 178
                  D    R  +   +LT 
Sbjct: 196 PLDFDYKDAIRMRRFIAHLILTD 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.97
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.96
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.96
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.96
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.95
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.95
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	96.78

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.97  E-value=9.3e-32  Score=227.47  Aligned_cols=150  Identities=16%  Similarity=0.265  Sum_probs=115.1

Q ss_pred             hHhhhHHHhhccccccchhhhhhhh---hhhcc---------------cccccceEEEeeeC------CCcceeeeEeee
Q 038478           16 VEKLQERVLRNACDIDTLHEDVVMR---DFYMK---------------DVGKCAKIFVPVNH------GFCHWYLLIIFI   71 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---------------DLfscdkIFVPVN~------ggsHWsL~VId~   71 (228)
                      ++.|+++..+++  -.++|   +|+   ++|++               |++++|+||||||.      ||+||+|+||++
T Consensus        36 ~~~L~~~~~~~~--~~~~~---~~~p~~s~f~~~~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~  110 (212)
T 2bkr_A           36 FEYFANSQFHDS--SDHVS---FISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQ  110 (212)
T ss_dssp             HHHHHHTTTGGG--TTTEE---EECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEG
T ss_pred             HHHHHHhhccCC--CCcEE---EEChHHHHHHHhCCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEe
Confidence            567777776554  24566   666   55553               79999999999995      689999999999


Q ss_pred             CCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHh
Q 038478           72 PEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRG  151 (228)
Q Consensus        72 keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~  151 (228)
                      ++++|.||||++++|..     .+++++..|..|++.+..     .+   .|   ...++|||+||||||||||+||+.+
T Consensus       111 ~~~~i~~~DSl~~~n~~-----~~~~l~~~l~~~l~~~~~-----~~---~~---~~~~~PqQ~N~~DCGvfvl~~~~~l  174 (212)
T 2bkr_A          111 DKNSFFHYDSHSRSNSV-----HAKQVAEKLEAFLGRKGD-----KL---AF---VEEKAPAQQNSYDCGMYVICNTEAL  174 (212)
T ss_dssp             GGTEEEEECSSTTTTHH-----HHHHHHHHHHHHHSCTTC-----CC---CE---EECCCCCCSSSSTHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCCHH-----HHHHHHHHHHHHhCCccc-----cc---eE---eECCCCCCCCCCcHHHHHHHHHHHH
Confidence            99999999999987653     366778888888865321     11   12   2358999999999999999999999


Q ss_pred             ccccCCCCcccCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 038478          152 GKWLQNPTFQCDFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDYN  195 (228)
Q Consensus       152 ~~w~~~p~f~~~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l~  195 (228)
                      +++.....    .    .+ ...++ +..+..+|.+++++|.+|.
T Consensus       175 ~~~~~~~~----~----~~-~~~~~~~~~i~~~R~~i~~lI~~L~  210 (212)
T 2bkr_A          175 CQNFFRQQ----T----ES-LLQLLTPAYITKKRGEWKDLIATLA  210 (212)
T ss_dssp             HHHHHSCC----C----CC-HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcC----c----cc-ccccCCHHHHHHHHHHHHHHHHHHh
Confidence            88553321    1    11 45666 7899999999999999985

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.96  E-value=1.2e-29  Score=218.92  Aligned_cols=141  Identities=15%  Similarity=0.241  Sum_probs=105.3

Q ss_pred             hHhhhHHHhhccccccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEE
Q 038478           16 VEKLQERVLRNACDIDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEI   78 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~y   78 (228)
                      ++.|++|.-++  +...+|   +|+++|+.                 +|+++|+||||||. ++||+|+|||+++++|.|
T Consensus        69 ~~~L~~~~~~~--~~~~~~---~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~  142 (238)
T 2xph_A           69 MNMLMERSKEK--GLPSVH---AFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITY  142 (238)
T ss_dssp             HHHHHHHTTST--TSCCEE---ECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEE
T ss_pred             HHHHHHhhhhc--CCCcee---eeecHHHHHhhhcccHHHHHHhccCCcccCCEEEEcccC-CCceEEEEEEcccceEEE
Confidence            46777775432  355677   77887762                 78999999999996 599999999999999999


Q ss_pred             EcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeec--cCCcCCCCCCCCchHHHHHHHHHHhccccC
Q 038478           79 WDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVL--QVTEFAVIPESYNYGVLILLMMQRGGKWLQ  156 (228)
Q Consensus        79 yDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~--~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~  156 (228)
                      |||+++.+..         ....|..|+..+...+.+...+.++|.+.  ...++|||.||||||||||+||+.+++  .
T Consensus       143 ~DSl~~~~~~---------~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~--~  211 (238)
T 2xph_A          143 YDSMGGINNE---------ACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITK--D  211 (238)
T ss_dssp             ECTTCCCCHH---------HHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHT--T
T ss_pred             eecccCCCHH---------HHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhc--C
Confidence            9999987642         23344556666665555556667778753  356899999999999999999999987  3


Q ss_pred             CCCcccCcchhHHHHHHHHH
Q 038478          157 NPTFQCDFDTERSQLVLQLL  176 (228)
Q Consensus       157 ~p~f~~~~~~~~~~~v~~~v  176 (228)
                      .|   .+|++..+...++.+
T Consensus       212 ~~---~~f~q~dm~~~R~~m  228 (238)
T 2xph_A          212 RP---INFTQQHMPYFRKRM  228 (238)
T ss_dssp             CC---CCCCGGGHHHHHHHH
T ss_pred             CC---CCcChhhHHHHHHHH
Confidence            33   466776665544433

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.96  E-value=2.9e-29  Score=214.69  Aligned_cols=141  Identities=17%  Similarity=0.247  Sum_probs=105.9

Q ss_pred             hHhhhHHHhhccccccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEE
Q 038478           16 VEKLQERVLRNACDIDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEI   78 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~y   78 (228)
                      ++.|+||.-++  ...++|   +|+++|+.                 +|+++|+||||||. ++||+|+|||+++++|.|
T Consensus        57 ~~~L~~~~~~~--~~~~~~---~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~  130 (226)
T 1th0_A           57 MNLLVERNKKQ--GYPALH---VFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKY  130 (226)
T ss_dssp             HHHHHHHHHHH--TCCCEE---ECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEE
T ss_pred             HHHHHHhhhhc--cCCcEE---EEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEE
Confidence            46777776543  234566   66666652                 89999999999996 599999999999999999


Q ss_pred             EcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeecc--CCcCCCCCCCCchHHHHHHHHHHhccccC
Q 038478           79 WDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQ--VTEFAVIPESYNYGVLILLMMQRGGKWLQ  156 (228)
Q Consensus        79 yDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~--~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~  156 (228)
                      |||+++.+..         +...|..|+..+.+.+.+...+.++|.+..  ..++|||.||||||||||+||+.+++  +
T Consensus       131 ~DSl~~~~~~---------~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~--~  199 (226)
T 1th0_A          131 LDSMGQKGHR---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISR--D  199 (226)
T ss_dssp             ECTTCCCCHH---------HHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTT--T
T ss_pred             EcCCCCCchH---------HHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhC--C
Confidence            9999987532         345556677777666555566677787542  46899999999999999999999977  3


Q ss_pred             CCCcccCcchhHHHHHHHHH
Q 038478          157 NPTFQCDFDTERSQLVLQLL  176 (228)
Q Consensus       157 ~p~f~~~~~~~~~~~v~~~v  176 (228)
                      .|   .+|++..+...++.+
T Consensus       200 ~~---~~f~q~dm~~~R~~~  216 (226)
T 1th0_A          200 KP---ITFTQHQMPLFRKKM  216 (226)
T ss_dssp             CC---CCCCGGGHHHHHHHH
T ss_pred             CC---CccChhhHHHHHHHH
Confidence            44   466776665555443

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.96  E-value=1.1e-30  Score=219.38  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=103.0

Q ss_pred             hHhhhHHHhhccccccchhhhhhhh---hhhcc--------------cccc-cceEEEeeeCCCcceeeeEeeeCCCeE-
Q 038478           16 VEKLQERVLRNACDIDTLHEDVVMR---DFYMK--------------DVGK-CAKIFVPVNHGFCHWYLLIIFIPEMRA-   76 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~--------------DLfs-cdkIFVPVN~ggsHWsL~VId~keK~f-   76 (228)
                      ++.|++|..+++.. ++.|   +|+   +++++              +.++ +|+||||||.+|+||||+|||+++++| 
T Consensus        14 ~~~L~~~~~~~~~~-~~v~---f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~iPin~~~~HWsLlvi~~~~~~~~   89 (186)
T 2oix_A           14 TDDLARRLRGEPNA-HLLH---FADSQVVTMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAV   89 (186)
T ss_dssp             HHHHHHHTTTSTTG-GGEE---ECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSEEEEEEEETTTEEEEEEEECSSTTSC
T ss_pred             HHHHHHHhhhccCc-ceEE---EECHHHHHHHHhCCHHHHHHHHHHcccccccCEEEEEEeCCCCccEEEEEECCCCeee
Confidence            57788887665541 2345   444   33333              2344 999999999988999999999999999 


Q ss_pred             --EEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHhccc
Q 038478           77 --EIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKW  154 (228)
Q Consensus        77 --~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w  154 (228)
                        +||||+++.+.      .+.+++..|..+++.+.          ..+   ...++|||+||||||||||+||+.+++|
T Consensus        90 ~~~~~DSl~~~~~------~~~~l~~~l~~~l~~~~----------~~~---~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~  150 (186)
T 2oix_A           90 AAYHYDSMAQKDP------QQRYLADMAAYHLGLDY----------QQT---HEMPIAIQSDGYSAGDHVLTGIEVLAHR  150 (186)
T ss_dssp             EEEEECCCSSCCH------HHHHHHHHHHHHTTCCG----------GGC---EEECBCCCC--CCHHHHHHHHHHHHHHH
T ss_pred             eeEEEcCCCCCCH------HHHHHHHHHHHHhCCCc----------ccc---ccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence              99999998542      25667777777775421          112   2357999999999999999999999987


Q ss_pred             cCCCCcccCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 038478          155 LQNPTFQCDFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDY  194 (228)
Q Consensus       155 ~~~p~f~~~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l  194 (228)
                      .....+ .++         .++ ++.+..+|.+++++|+++
T Consensus       151 ~~~~~~-~~~---------~~~~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          151 VLDGTF-DYA---------GGRDLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             HHHTCT-TST---------TTTCBTTCCCCHHHHHHHHHCC
T ss_pred             HhhcCc-cCC---------CcCCHHHHHHHHHHHHHHHHhc
Confidence            532111 111         123 556788999999999876

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=223.41  Aligned_cols=140  Identities=19%  Similarity=0.205  Sum_probs=106.8

Q ss_pred             cccccceEEEeeeCCCcceeeeEeeeCCC---------------------------------------------------
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEM---------------------------------------------------   74 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~keK---------------------------------------------------   74 (228)
                      |||++|+||||||. ++||+|+||+++.+                                                   
T Consensus       117 dlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  195 (323)
T 3eay_A          117 NIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESN  195 (323)
T ss_dssp             CGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC---------------------------------------------
T ss_pred             ccccCCEEEEecCC-CCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999996 59999999999853                                                   


Q ss_pred             -----------eEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcC--CcccceeeccCCcCCCCCCCCchH
Q 038478           75 -----------RAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAG--TKFEHFTVLQVTEFAVIPESYNYG  141 (228)
Q Consensus        75 -----------~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~--~d~~~f~v~~~~~iPqQ~NGyDCG  141 (228)
                                 .|.|||||+++.        -.+++..|..|+.+|.+.+....  ++.+.|.. ..+.+|||.||||||
T Consensus       196 ~~~~~~~~k~pcIl~lDSL~~~~--------~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~-~~~~~P~Q~N~~DCG  266 (323)
T 3eay_A          196 MSVPKKMCKRPCILILDSLKAAS--------VQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVD-LCPKVPKQDNSSDCG  266 (323)
T ss_dssp             ----CCCCBCSEEEEECSSCCSS--------HHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCE-ECCBCCCCCSTTCHH
T ss_pred             cccccccCCCCeEEEEECCCCCC--------cchHHHHHHHHHHHHHHhhcCCCcCCCHhHcee-ccCCCCCcCCCCcHH
Confidence                       589999999953        24467788889999887765433  33345542 346799999999999


Q ss_pred             HHHHHHHHHhccccCCCCccc-CcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccchH
Q 038478          142 VLILLMMQRGGKWLQNPTFQC-DFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDYNMANKITSE  203 (228)
Q Consensus       142 VFVlk~ae~~~~w~~~p~f~~-~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l~~~~~~~~~  203 (228)
                      ||||+||+.++++... +|.. .+.       ..+. +..|..+|+||+.+|..|..+....|+
T Consensus       267 vfvl~~~e~~~~~~~~-~f~~~~~~-------~~wf~~~~i~~kR~ei~~LI~~L~~~q~~~~~  322 (323)
T 3eay_A          267 VYLLQYVESFFKDPIV-NFELPIHL-------EKWFPRHVIKTKREDIRELILKLHLQQQKGSS  322 (323)
T ss_dssp             HHHHHHHHHHHHSCCC-CCCSSCBC-------TTSSCHHHHHTHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCcc-cccccccc-------ccCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999884432 2211 111       3455 899999999999999999887654443

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.95  E-value=8.7e-28  Score=205.25  Aligned_cols=119  Identities=20%  Similarity=0.335  Sum_probs=90.8

Q ss_pred             cccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceee
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTV  125 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v  125 (228)
                      |++++|+||||||.+++||+|+|||+++++|.||||+++++...     ..+++..|..|+.++.+++.+..+++     
T Consensus        97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~~~l~~~l~~e~~~~~~~~~~~-----  166 (221)
T 1euv_A           97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----SFAILTDLQKYVMEESKHTIGEDFDL-----  166 (221)
T ss_dssp             CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----HHHHHHHHHHHHHHHTTSSSCTTCEE-----
T ss_pred             CcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcch-----HHHHHHHHHHHHHHHHHHhcCCCceE-----
Confidence            78999999999998789999999999999999999998754321     33567778888887766554444432     


Q ss_pred             ccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038478          126 LQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKS  191 (228)
Q Consensus       126 ~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v~~~V~~mr~evl~~i  191 (228)
                       ...++|||.||||||||||+||+.+++  +.|   .+|++..           +..+|.+++..|
T Consensus       167 -~~~~~PqQ~N~~DCGvfv~~~~~~~~~--~~~---l~f~~~d-----------~~~~R~~i~~~I  215 (221)
T 1euv_A          167 -IHLDCPQQPNGYDCGIYVCMNTLYGSA--DAP---LDFDYKD-----------AIRMRRFIAHLI  215 (221)
T ss_dssp             -EEECCCCCSSSSTHHHHHHHHHHHHHT--TCC---CCCCHHH-----------HHHHHHHHHHHH
T ss_pred             -eecCCCCCCCCcCHHHHHHHHHHHHhC--CCC---CCcCHHH-----------HHHHHHHHHHHH
Confidence             235899999999999999999999977  344   4566643           345666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	7e-05
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	2e-04

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 46  DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKI 105
            + K  KIF P+N    HW L II + +      D   +       N+ +  IL  L K 
Sbjct: 97  QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNG-----PNAMSFAILTDLQKY 151

Query: 106 LNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFD 165
           +  +++  +       H    Q       P  Y+ G+ + +    G           D  
Sbjct: 152 VMEESKHTIGEDFDLIHLDCPQ------QPNGYDCGIYVCMNTLYGSADAPLDFDYKDAI 205

Query: 166 TERSQLVLQLLTS 178
             R  +   +LT 
Sbjct: 206 RMRRFIAHLILTD 218

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 14/144 (9%)

Query: 38  VMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKT 97
           V R     ++ +   I VP++    HW L++I + +   +  D                 
Sbjct: 91  VKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQK------GHRICE 143

Query: 98  ILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQN 157
           IL    +  +   R       ++ H ++ +  E        + G+             ++
Sbjct: 144 ILLQYLQDESKTKRNSDLNLLEWTHHSM-KPHEIPQQLNGSDCGMFTCKYADY---ISRD 199

Query: 158 PTF---QCDFDTERSQLVLQLLTS 178
                 Q      R ++V ++L  
Sbjct: 200 KPITFTQHQMPLFRKKMVWEILHQ 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.94
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.94
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.92
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.91
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	96.55

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7e-27  Score=193.06  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             cccccceEEEeee------CCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCc
Q 038478           46 DVGKCAKIFVPVN------HGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTK  119 (228)
Q Consensus        46 DLfscdkIFVPVN------~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d  119 (228)
                      ++++++.||+|||      .+|+||+|+||+++++++.||||+++.+...     +.++...|..++...     .....
T Consensus        79 ~~~~~~~ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~~~~~l~~~~~~~-----~~~~~  148 (212)
T d2bkra1          79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-----AKQVAEKLEAFLGRK-----GDKLA  148 (212)
T ss_dssp             TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-----HHHHHHHHHHHHSCT-----TCCCC
T ss_pred             ChhhccEEEEecccccccccCcceeeeeeeccccceEEEecCCCcCCHHH-----HHHHHHHHHHHhccc-----cCcee
Confidence            8999999999999      3579999999999999999999999876543     555655555554321     11111


Q ss_pred             ccceeeccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 038478          120 FEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDYNM  196 (228)
Q Consensus       120 ~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l~~  196 (228)
                         +   ....+|||+||||||||||+||+.++++....++.  ..       .++. +..+..||.+++.+|..|..
T Consensus       149 ---~---~~~~~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~~--~~-------~~~~~~~~i~~~R~~l~~lI~~L~~  211 (212)
T d2bkra1         149 ---F---VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTE--SL-------LQLLTPAYITKKRGEWKDLIATLAK  211 (212)
T ss_dssp             ---E---EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCC--CH-------HHHCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---e---eecccCCCCCCCChHHHHHHHHHHHHHhcccccch--hh-------hhcCCHHHHHHHHHHHHHHHHHHhc
Confidence               1   24578999999999999999999998755443221  11       1344 77899999999999998864

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-26  Score=195.35  Aligned_cols=108  Identities=22%  Similarity=0.375  Sum_probs=85.3

Q ss_pred             cccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceee
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTV  125 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v  125 (228)
                      +++++|+||||||.+++||+|+|||+++++|.||||+++++...     ...++..|..|+.++.+.+....+++.    
T Consensus        97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~~~----  167 (221)
T d1euva_          97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----SFAILTDLQKYVMEESKHTIGEDFDLI----  167 (221)
T ss_dssp             CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----HHHHHHHHHHHHHHHTTSSSCTTCEEE----
T ss_pred             chhhcceeEeeEecccceEEEEEeeccccceeeeccccCCCcHH-----HHHHHHHHHHHHHHHHHhhcCCCCeee----
Confidence            78999999999998889999999999999999999999876543     566777777888766555444444432    


Q ss_pred             ccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHH
Q 038478          126 LQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERS  169 (228)
Q Consensus       126 ~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~  169 (228)
                        ..++|||+||||||||||+||+.+..  +.|   .+|++..+
T Consensus       168 --~~~~PqQ~N~~DCGvfvl~~~~~~~~--~~~---~~~~q~d~  204 (221)
T d1euva_         168 --HLDCPQQPNGYDCGIYVCMNTLYGSA--DAP---LDFDYKDA  204 (221)
T ss_dssp             --EECCCCCSSSSTHHHHHHHHHHHHHT--TCC---CCCCHHHH
T ss_pred             --eccCCCCCCCCChHHHHHHHHHHHhC--CCC---CccCHHHH
Confidence              23789999999999999999998865  443   45666543

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6e-25  Score=182.25  Aligned_cols=117  Identities=14%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             ccccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCccccee
Q 038478           45 KDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFT  124 (228)
Q Consensus        45 ~DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~  124 (228)
                      .+++++++||+|||. ++||+|+|||++++++.||||+++.+...         ...+..++..+.........+...|.
T Consensus        98 ~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~---------~~~i~~~l~~~~~~~~~~~~~~~~~~  167 (226)
T d1th0a_          98 VNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRI---------CEILLQYLQDESKTKRNSDLNLLEWT  167 (226)
T ss_dssp             CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHH---------HHHHHHHHHHHHHHHTSCCCCGGGCE
T ss_pred             cCcccCCEEEEeEEc-CCceEEEEEEeccceEEEeccccCCChHH---------HHHHHHHHHHHHHHhhCCCcCcccce
Confidence            389999999999995 58999999999999999999999876432         23333445444444444444444443


Q ss_pred             --eccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHH
Q 038478          125 --VLQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLL  176 (228)
Q Consensus       125 --v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v  176 (228)
                        ...++++|||+||||||||||+||+.+..  ..|   .++++..+...++.+
T Consensus       168 ~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~--~~~---~~~tq~di~~~R~~i  216 (226)
T d1th0a_         168 HHSMKPHEIPQQLNGSDCGMFTCKYADYISR--DKP---ITFTQHQMPLFRKKM  216 (226)
T ss_dssp             EEECCTTTSCCCCSSSCHHHHHHHHHHHHTT--TCC---CCCCGGGHHHHHHHH
T ss_pred             eeeeccCCCCCCCCCCCHHHHHHHHHHHHhC--CCC---CCcCHHHHHHHHHHH
Confidence              23456899999999999999999999865  332   355665555444333

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=180.25  Aligned_cols=115  Identities=13%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             cccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceee
Q 038478           46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTV  125 (228)
Q Consensus        46 DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v  125 (228)
                      +++++++||||||. +.||+|+||+++.++|.||||+++.+...     +..+...|..    +...+.....+...|..
T Consensus        99 ~~~~~~~I~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~~~l~~----~~~~~~~~~~~~~~~~~  168 (225)
T d2iy1a1          99 DVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEA-----CRILLQYLKQ----ESIDKKRKEFDTNGWQL  168 (225)
T ss_dssp             CGGGSSEEEEEEEC-SSCEEEEEEETTTTEEEEECTTCCCCHHH-----HHHHHHHHHH----HHHHHHSSCCCCTTCEE
T ss_pred             ccccCCEEEEEEeC-CCCEEEEEEEeccceEEEEecCCCCchHH-----HHHHHHHHHH----HHHHhccCccCccccee
Confidence            78899999999995 59999999999999999999999976532     3334433333    33333334444455543


Q ss_pred             --ccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHH
Q 038478          126 --LQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQL  175 (228)
Q Consensus       126 --~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~  175 (228)
                        ..+.++|||.||||||||||+||+.+..  +.|   .+++++.+...++.
T Consensus       169 ~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~--~~~---~~~~q~~~~~~R~~  215 (225)
T d2iy1a1         169 FSKKSQEIPQQMNGSDAGMFACKYADCITK--DRP---INFTQQHMPYFRKR  215 (225)
T ss_dssp             EECCTTTSCCCCSSSTHHHHHHHHHHHHHT--TCC---CCCCGGGHHHHHHH
T ss_pred             cccccccCCCCCCCCChHHHHHHHHHHHhC--CCC---CCcCHHHHHHHHHH
Confidence              3456899999999999999999999864  333   35666655544433

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=96.55  E-value=0.005  Score=51.17  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=62.7

Q ss_pred             CCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHH-HHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCC
Q 038478           59 HGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILR-SLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPES  137 (228)
Q Consensus        59 ~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~-~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NG  137 (228)
                      .||+||--.+.|-+.++++.+|.+|=+      +.+++++-. ..+.++....-...+   |- =.+.+......|=+++
T Consensus        49 tGG~HWlA~Aw~P~s~t~Y~FDPfGfs------d~~L~q~Y~FeY~~llkRSAL~~sp---dR-Cvtlvkstq~VQcp~S  118 (203)
T d1nlna_          49 TGGVHWMAFAWNPRSKTCYLFEPFGFS------DQRLKQVYQFEYESLLRRSAIASSP---DR-CITLEKSTQSVQGPNS  118 (203)
T ss_dssp             TCCCCEEEEEEETTTTEEEEECTTCCC------HHHHHHHHCCCCHHHHHHHHHHHCT---TS-EEEEEEECEECSCTTC
T ss_pred             cCceeeEEeEecCCcCeEEEECCCCCC------HHHHHHHhhhhHHHHHHHHhhcCCC---Cc-eEEEEeccceecCCCc
Confidence            799999999999999999999999986      556666643 112233222111111   10 0122233455677899


Q ss_pred             CchHHHHHHHHHHhccccCCC
Q 038478          138 YNYGVLILLMMQRGGKWLQNP  158 (228)
Q Consensus       138 yDCGVFVlk~ae~~~~w~~~p  158 (228)
                      --||.|-|+|.-..-.|-.+|
T Consensus       119 aaCGLFC~lFL~aF~~~p~~p  139 (203)
T d1nlna_         119 AACGLFCCMFLHAFANWPQTP  139 (203)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSC
T ss_pred             hhHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998887