Citrus Sinensis ID: 038479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKEGKTVKFNLHSHqqqqqhangghlspfkfaklldpdaswdkdqlgDVLHWIRQVVALVCGLLwgsiplvgGIWIVIFLLISSAIIYGYYAMVLKideedfgghgalLQEGLFASTTLFLLVWILVYSLAHF
Flexible Loop (DISEMBL)
MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Low Complexity Region (SEG)
MKEGKTVKFNLHShqqqqqhANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Disordered region (IsUnstruct)
***************************PFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLA**
Disordered Region (DISOPRED)
*********************************LLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Disordered Region (DISEMBL)
MKEGKTVKFNL***********GGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Disordered Region (DISPRO)
****************************FKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q9CQT9	129	Uncharacterized protein C	yes	no	0.909	0.937	0.414	1e-21
Q9BUV8	137	Uncharacterized protein C	no	no	0.864	0.839	0.401	1e-17

>sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 12  HSHQQQQQHANGGHLSPFKFAKLLDPDASWD-KDQLGDVLHWIRQVVALVCGLLWGSIPL 70
                Q Q ANG  L    ++K+L  DA+WD KD+  DV++W RQ++ALV G++WG +PL
Sbjct: 7   KEEPPQPQLANGA-LKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPL 65

Query: 71  VGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSL 130
            G + I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+ 
Sbjct: 66  RGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTA 125

Query: 131 AHF 133
            H+
Sbjct: 126 IHY 128

Mus musculus (taxid: 10090)

>sp|Q9BUV8|CT024_HUMAN Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 17  QQQHANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIW 75
           Q Q ANG  L    ++K+L  DA+W DKD+  DV++W RQ++A+V G++WG +PL G + 
Sbjct: 12  QPQLANGA-LKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLG 70

Query: 76  IVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAH 132
           I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF++     ++  H
Sbjct: 71  IAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
225434913	129	PREDICTED: uncharacterized protein C20or	0.969	1.0	0.834	8e-56
449450748	129	PREDICTED: uncharacterized protein C20or	0.969	1.0	0.774	8e-54
15238396	130	Rab5-interacting family protein [Arabido	0.977	1.0	0.781	4e-52
110738164	130	putative Rab5-interacting protein - like	0.977	1.0	0.774	1e-51
297796889	129	hypothetical protein ARALYDRAFT_919171 [	0.969	1.0	0.759	2e-51
356539002	127	PREDICTED: uncharacterized protein C20or	0.954	1.0	0.759	2e-50
351723465	127	uncharacterized protein LOC100526939 [Gl	0.954	1.0	0.759	2e-50
224106465	133	predicted protein [Populus trichocarpa]	1.0	1.0	0.796	5e-50
224054692	132	predicted protein [Populus trichocarpa]	0.992	1.0	0.789	2e-49
449455100	126	PREDICTED: uncharacterized protein C20or	0.947	1.0	0.714	9e-49

>gi|225434913|ref|XP_002283455.1| PREDICTED: uncharacterized protein C20orf24 homolog [Vitis vinifera] gi|297746059|emb|CBI16115.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 118/133 (88%), Gaps = 4/133 (3%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKEGK+VK    S+ QQ  H   GHLSPFKFAKLLDP+ASWDKDQLGDVLHWIRQ VALV
Sbjct: 1   MKEGKSVK----SNGQQHHHDQNGHLSPFKFAKLLDPEASWDKDQLGDVLHWIRQAVALV 56

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CGLLWGSIPLVGGIWI++FLLISS IIYGYYA++LKIDEEDFGGHGALLQEGLFAS TLF
Sbjct: 57  CGLLWGSIPLVGGIWIILFLLISSGIIYGYYAIILKIDEEDFGGHGALLQEGLFASITLF 116

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSL HF
Sbjct: 117 LLAWILVYSLVHF 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450748|ref|XP_004143124.1| PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis sativus] gi|449518332|ref|XP_004166196.1| PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis sativus]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%), Gaps = 4/133 (3%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKE K VKFNLH HQ  Q     GHL+PFK AKL+DP+ASWDKDQLGDVLHWIRQ VA++
Sbjct: 1   MKEAKPVKFNLHQHQDHQN----GHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVI 56

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
            GLLWGSIPLVGGIW +IFL IS++++YGYYAM+LK+DEE+FGGHGALLQEGLFAS TLF
Sbjct: 57  LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLF 116

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 117 LLAWILVYSLAHF 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238396|ref|NP_200749.1| Rab5-interacting family protein [Arabidopsis thaliana] gi|46931208|gb|AAT06408.1| At5g59410 [Arabidopsis thaliana] gi|332009799|gb|AED97182.1| Rab5-interacting family protein [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 112/133 (84%), Gaps = 3/133 (2%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKE K+ K N    QQQ+ H N  HLSP K AKL DPDASWDKDQLGDVLHWIRQVV L+
Sbjct: 1   MKESKSAKLN--QLQQQENHQNA-HLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLI 57

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
            GLLWGSIPLVGGIWI++FL ISS I+YGYYAM+LK+DEEDFGGH ALLQEGLFAS TLF
Sbjct: 58  SGLLWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLF 117

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 118 LLAWILVYSLAHF 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738164|dbj|BAF01013.1| putative Rab5-interacting protein - like [Arabidopsis thaliana]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 111/133 (83%), Gaps = 3/133 (2%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKE K+ K N    QQQ+ H N  HLSP K AKL DPDASWDKDQLGDVLHWIRQVV L+
Sbjct: 1   MKESKSAKLN--QLQQQENHQNA-HLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLI 57

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
            GLLWGSIPLVGGIWI++FL ISS I+YGYYAM+LK+DEEDFGGH  LLQEGLFAS TLF
Sbjct: 58  SGLLWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAVLLQEGLFASLTLF 117

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 118 LLAWILVYSLAHF 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796889|ref|XP_002866329.1| hypothetical protein ARALYDRAFT_919171 [Arabidopsis lyrata subsp. lyrata] gi|297312164|gb|EFH42588.1| hypothetical protein ARALYDRAFT_919171 [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 111/133 (83%), Gaps = 4/133 (3%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           M+E K+ K N    Q Q+ +    HLSP K AKL DPDASWDKDQLGDVLHWIRQVV L+
Sbjct: 1   MRESKSAKLN----QLQEDNHQNVHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLI 56

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CGLLWGSIPLVGGIWI++FL ISS I+YGYYAM+LK+DEEDFGGH ALLQEGLFAS TLF
Sbjct: 57  CGLLWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLF 116

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 117 LLAWILVYSLAHF 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539002|ref|XP_003537989.1| PREDICTED: uncharacterized protein C20orf24 homolog [Glycine max]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 113/133 (84%), Gaps = 6/133 (4%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKEGK+VK N   HQQ  Q+   GHLSP KFAKL DP+ASWDKDQLGDVLHWIRQV+ L 
Sbjct: 1   MKEGKSVKLN---HQQPHQN---GHLSPSKFAKLFDPEASWDKDQLGDVLHWIRQVLGLA 54

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CG LWGSIPLVGGIW ++FL +S+ IIY YYA++LK+DEE+FGGHGALLQEGLFAS TLF
Sbjct: 55  CGFLWGSIPLVGGIWFILFLALSTGIIYSYYAVILKVDEEEFGGHGALLQEGLFASITLF 114

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 115 LLSWILVYSLAHF 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723465|ref|NP_001236256.1| uncharacterized protein LOC100526939 [Glycine max] gi|255631191|gb|ACU15961.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 113/133 (84%), Gaps = 6/133 (4%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKEGK+VK N   HQQ  Q+   GHL+P KFAKL DP+ASWDKDQLGDVLHWIRQV+ L 
Sbjct: 1   MKEGKSVKLN---HQQPHQN---GHLTPSKFAKLFDPEASWDKDQLGDVLHWIRQVLGLA 54

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CG LWGSIPLVGGIW +IFL +S+ IIY YYA++LK+DEE+FGGHGALLQEGLFAS TLF
Sbjct: 55  CGFLWGSIPLVGGIWFIIFLALSTGIIYSYYAVMLKVDEEEFGGHGALLQEGLFASITLF 114

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 115 LLSWILVYSLAHF 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106465|ref|XP_002314175.1| predicted protein [Populus trichocarpa] gi|222850583|gb|EEE88130.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 115/133 (86%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKEGK+     +S+ QQQ     GH SP KFAKLLDP+ASWDKDQLGDVLHWIRQVVALV
Sbjct: 1   MKEGKSAAKLNNSNNQQQHQHQNGHFSPSKFAKLLDPEASWDKDQLGDVLHWIRQVVALV 60

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CG+LWG+IPLVGGIWI +FLLISS IIYGYYAM+LKIDE+DFGGH ALLQEGLFAS TLF
Sbjct: 61  CGILWGTIPLVGGIWIGLFLLISSGIIYGYYAMILKIDEDDFGGHSALLQEGLFASITLF 120

Query: 121 LLVWILVYSLAHF 133
           LL WILVYSLAHF
Sbjct: 121 LLSWILVYSLAHF 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054692|ref|XP_002298350.1| predicted protein [Populus trichocarpa] gi|222845608|gb|EEE83155.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 115/133 (86%), Gaps = 1/133 (0%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MKEGK+    L+++  QQQ    GHLSPFK AKLLDP+ASWDKDQLGDVLHWIRQVVALV
Sbjct: 1   MKEGKSSA-KLNNNNNQQQQHQNGHLSPFKLAKLLDPEASWDKDQLGDVLHWIRQVVALV 59

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CGLLWG+IPLVGGIWI +FLLISS IIY YY M+LKIDE+DFGGHG LLQEGLFAS TLF
Sbjct: 60  CGLLWGAIPLVGGIWIALFLLISSGIIYVYYGMILKIDEDDFGGHGTLLQEGLFASITLF 119

Query: 121 LLVWILVYSLAHF 133
           LL WIL+YSLAHF
Sbjct: 120 LLSWILMYSLAHF 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455100|ref|XP_004145291.1| PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis sativus] gi|449473539|ref|XP_004153910.1| PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis sativus] gi|449515665|ref|XP_004164869.1| PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis sativus]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 7/133 (5%)

Query: 1   MKEGKTVKFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
           MK+GK++K N     Q QQ+   GHL PFK AKL DP+ SWDKDQLGDVLHW+RQ VALV
Sbjct: 1   MKDGKSMKVN----SQLQQN---GHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALV 53

Query: 61  CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
           CGLLWGSIPLVGG+W ++FL+IS+ +IYGYYAM+LK+DEE+FGGHG LLQEGLFAS TLF
Sbjct: 54  CGLLWGSIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLF 113

Query: 121 LLVWILVYSLAHF 133
           LL+W L+YSL HF
Sbjct: 114 LLMWTLIYSLGHF 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2148353	130	AT5G59410 "AT5G59410" [Arabido	0.977	1.0	0.751	3.6e-50
TAIR|locus:2066081	133	AT2G29020 "AT2G29020" [Arabido	1.0	1.0	0.691	2.6e-47
UNIPROTKB|F1NXV3	135	C20H20orf24 "Uncharacterized p	0.849	0.837	0.422	1.8e-23
MGI|MGI:1914638	129	1110008F13Rik "RIKEN cDNA 1110	0.842	0.868	0.429	6.1e-23
UNIPROTKB|Q3T187	129	RIP5 "Uncharacterized protein"	0.842	0.868	0.421	7.8e-23
RGD|1307752	129	RGD1307752 "similar to RIKEN c	0.842	0.868	0.421	1.3e-22
UNIPROTKB|Q9BUV8	137	C20orf24 "Uncharacterized prot	0.759	0.737	0.427	8.3e-19
UNIPROTKB|H0YNI0	155	TGIF2-C20ORF24 "Protein TGIF2-	0.684	0.587	0.406	1.1e-18
DICTYBASE|DDB_G0289011	113	DDB_G0289011 "putative Rab5-in	0.676	0.796	0.336	6.2e-14
WB|WBGene00018431	121	F44E7.9 [Caenorhabditis elegan	0.736	0.809	0.363	1e-13

TAIR|locus:2148353 AT5G59410 "AT5G59410" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 100/133 (75%), Positives = 107/133 (80%)

Query:     1 MKEGKTVKFNLHSXXXXXXXANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
             MKE K+ K N          A   HLSP K AKL DPDASWDKDQLGDVLHWIRQVV L+
Sbjct:     1 MKESKSAKLNQLQQQENHQNA---HLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLI 57

Query:    61 CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
              GLLWGSIPLVGGIWI++FL ISS I+YGYYAM+LK+DEEDFGGH ALLQEGLFAS TLF
Sbjct:    58 SGLLWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLF 117

Query:   121 LLVWILVYSLAHF 133
             LL WILVYSLAHF
Sbjct:   118 LLAWILVYSLAHF 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2066081 AT2G29020 "AT2G29020" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/133 (69%), Positives = 105/133 (78%)

Query:     1 MKEGKTVKFNLHSXXXXXXXANGGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALV 60
             MKEGK+ K +              HL  F FAKL D +ASWDKDQLGDVLHWIRQVV L+
Sbjct:     1 MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query:    61 CGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLF 120
             CGLLWG+IPLVGGIW+++FL ISS I+YGYYA+VLKIDEEDFGGH ALLQ+GLFAS +LF
Sbjct:    61 CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query:   121 LLVWILVYSLAHF 133
             LL WILVYSL+ F
Sbjct:   121 LLAWILVYSLSSF 133

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NXV3 C20H20orf24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/116 (42%), Positives = 77/116 (66%)

Query:    21 ANGGHLSP--FKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIV 77
             ANGG   P    + K L  D++W DKD+  DV++W RQ++A++ G++WG +PL G + I 
Sbjct:    19 ANGGGAGPRGSVWGKALRSDSAWHDKDEFLDVIYWFRQIIAVILGVIWGVVPLKGFVGIA 78

Query:    78 IFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 133
             IF LI++ ++Y Y++   +IDEE++GG   L +EG   S  LFL+VWI+ Y+  H+
Sbjct:    79 IFCLINAGVLYLYFSSFQQIDEEEYGGTWELTKEGFMTSFALFLVVWIIFYTAIHY 134

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1914638 1110008F13Rik "RIKEN cDNA 1110008F13 gene" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 49/114 (42%), Positives = 78/114 (68%)

Query:    21 ANGGHLSPFKFAKLLDPDASWD-KDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIF 79
             ANG  L    ++K+L  DA+WD KD+  DV++W RQ++ALV G++WG +PL G + I  F
Sbjct:    16 ANGA-LKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGF 74

Query:    80 LLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 133
              LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+  H+
Sbjct:    75 CLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3T187 RIP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 48/114 (42%), Positives = 78/114 (68%)

Query:    21 ANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIF 79
             ANG  L    ++K+L  DA+W DKD+  DV++W RQ++A+V G++WG +PL G + I  F
Sbjct:    16 ANGA-LKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGF 74

Query:    80 LLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 133
              LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+  H+
Sbjct:    75 CLINAGVLYVYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAVHY 128

GO:0005739 "mitochondrion" evidence=IEA

RGD|1307752 RGD1307752 "similar to RIKEN cDNA 1110008F13" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/114 (42%), Positives = 78/114 (68%)

Query:    21 ANGGHLSPFKFAKLLDPDASWD-KDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIF 79
             ANG  L    ++K+L  DA+WD KD+  DV++W RQ++A+V G++WG +PL G + I  F
Sbjct:    16 ANGA-LKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIAVVLGVIWGILPLRGFLGIAGF 74

Query:    80 LLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 133
              LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+  H+
Sbjct:    75 CLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q9BUV8 C20orf24 "Uncharacterized protein C20orf24" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/103 (42%), Positives = 70/103 (67%)

Query:    21 ANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIF 79
             ANG  L    ++K+L  DA+W DKD+  DV++W RQ++A+V G++WG +PL G + I  F
Sbjct:    16 ANGA-LKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGF 74

Query:    80 LLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLL 122
              LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF++
Sbjct:    75 CLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H0YNI0 TGIF2-C20ORF24 "Protein TGIF2-C20ORF24" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 37/91 (40%), Positives = 64/91 (70%)

Query:    43 KDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDF 102
             +D+  DV++W RQ++A+V G++WG +PL G + I  F LI++ ++Y Y++  L+IDEE++
Sbjct:    64 QDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 123

Query:   103 GGHGALLQEGLFASTTLFLLVWILVYSLAHF 133
             GG   L +EG   S  LF+++WI+ Y+  H+
Sbjct:   124 GGTWELTKEGFMTSFALFMVIWIIFYTAIHY 154

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0289011 DDB_G0289011 "putative Rab5-interacting protein (Rab5ip)" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 31/92 (33%), Positives = 59/92 (64%)

Query:    38 DASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKI 97
             D  +   ++   +HW+RQ+V+++ G++ GSIP++G    + FL+ +   +  YY  VL+I
Sbjct:    20 DFKFTNKEIAQNVHWLRQIVSILVGIIVGSIPVIGFPGFIAFLIFTCGFVAIYYTKVLEI 79

Query:    98 DEEDFGGHGALLQEGLFASTTLFLLVWILVYS 129
             +E+DF     L++EG  +S T+F++ WI+ Y+
Sbjct:    80 EEDDFKWE--LMREGFMSSLTIFVISWIIAYN 109

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00018431 F44E7.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/99 (36%), Positives = 60/99 (60%)

Query:    32 AKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGY 90
             AK L P + W DKD+L DV++W +QV++L+ G ++G   L G + +V ++  SS I + +
Sbjct:    18 AKGLTPRSEWPDKDELLDVVYWGKQVISLLLGFIFGITSLTGVLVLVCYVGTSSVIAHHF 77

Query:    91 YAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYS 129
                  ++DEE+ GG   L +EG  A+   F++ WI  Y+
Sbjct:    78 VTKFQRVDEEEVGGFWELSKEGFGAAFATFMVTWITTYT 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.145   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       126   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.24u 0.18s 12.42t   Elapsed:  00:00:01
  Total cpu time:  12.24u 0.18s 12.42t   Elapsed:  00:00:01
  Start:  Sat May 11 09:02:47 2013   End:  Sat May 11 09:02:48 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQT9	CT024_MOUSE	No assigned EC number	0.4146	0.9097	0.9379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024300001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (129 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025411001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (193 aa)				•					0.463

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam07019	81	pfam07019, Rab5ip, Rab5-interacting protein (Rab5i	3e-25

>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip)

 Score = 90.7 bits (226), Expect = 3e-25
 Identities = 37/81 (45%), Positives = 49/81 (60%)

Query: 48  DVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGA 107
           DVL+W+RQV++L+ G++ G + L G +  + + LIS    Y YYA V KIDEE FGG   
Sbjct: 1   DVLYWVRQVISLLAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60

Query: 108 LLQEGLFASTTLFLLVWILVY 128
           L  EGL      F+L W L Y
Sbjct: 61  LFTEGLLTGLATFVLTWTLFY 81

This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG3415	129	consensus Putative Rab5-interacting protein [Intra	100.0
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	99.95
KOG4455	110	consensus Uncharacterized conserved protein [Funct	99.9
PF11085	173	YqhR: Conserved membrane protein YqhR; InterPro: I	89.03
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.3

>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-45  Score=270.45  Aligned_cols=116  Identities=58%  Similarity=0.991  Sum_probs=112.0

Q ss_pred             hhhccCCCCChHHHhhhhCCCCCC-ChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 038479           18 QQHANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLK   96 (133)
Q Consensus        18 ~~~~~~~~~~~s~~~~a~~~~~~w-dKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~   96 (133)
                      |++.+|++..+|.+++.+++|++| ||||++|||||+||++++++|++|||+||+|+.|++.|+.+++++.|+|++++++
T Consensus        12 q~q~~n~tl~~s~~~kl~~~da~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~   91 (129)
T KOG3415|consen   12 QQQEQNATLSESKAAKLTDSDAEWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLK   91 (129)
T ss_pred             chhhhcccccHHHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            334567999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccchhhcchhhhhhHHHHHHHHHhhcccC
Q 038479           97 IDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF  133 (133)
Q Consensus        97 ~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~Y~lvH~  133 (133)
                      +|||+|||.||+.+||||++|++|+++|+++|++.|+
T Consensus        92 VDEee~GG~weL~kEGf~asfa~FlvtWIi~Yt~~hy  128 (129)
T KOG3415|consen   92 VDEEEYGGHWELLKEGFMASFALFLVTWIIFYTLAHY  128 (129)
T ss_pred             cCHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999996

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=99.95  E-value=3.9e-28  Score=166.57  Aligned_cols=81  Identities=37%  Similarity=0.659  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcchhhhhhHHHHHHHHH
Q 038479           48 DVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILV  127 (133)
Q Consensus        48 ~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~  127 (133)
                      |+++|+||++|+++|++|||+||||+.||++|++++.+++++++.+.++.+++++++++|+++||+++++++|||+||++
T Consensus         1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~   80 (81)
T PF07019_consen    1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence            78999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             h
Q 038479          128 Y  128 (133)
Q Consensus       128 Y  128 (133)
                      |
T Consensus        81 Y   81 (81)
T PF07019_consen   81 Y   81 (81)
T ss_pred             C
Confidence            8

>KOG4455 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=7.1e-24  Score=153.41  Aligned_cols=87  Identities=20%  Similarity=0.307  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcchhhhhhHHHHHHHH
Q 038479           47 GDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWIL  126 (133)
Q Consensus        47 l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl  126 (133)
                      .+++.++|+.+|+++||+||||||||+.||++|++.+.+.+.++..|++..+..+|.++..+++|+++.++++|||+||+
T Consensus        23 ~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~f~~~f~~Gl~tyVl~Wtf  102 (110)
T KOG4455|consen   23 KKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNLFTESFLGGLTTYVLAWTF  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHHHHHHHhchHHHHHHHHHH
Confidence            46899999999999999999999999999999999988888888889988888899888899999999999999999999


Q ss_pred             HhhcccC
Q 038479          127 VYSLAHF  133 (133)
Q Consensus       127 ~Y~lvH~  133 (133)
                      .|++||+
T Consensus       103 ~Y~lv~~  109 (110)
T KOG4455|consen  103 FYGLVHV  109 (110)
T ss_pred             Hhhhhcc
Confidence            9999996

>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes

Probab=89.03  E-value=1.1  Score=35.29  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             HHHHHHhhhhhhccch-----------------------------hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 038479           56 VVALVCGLLWGSIPLV-----------------------------GGIWIVIFLLISSAIIYGYYAMVLKI   97 (133)
Q Consensus        56 i~ali~Gi~aGILgLt-----------------------------G~~Gfl~F~~~~~~~~~~~~~~~~~~   97 (133)
                      .++...|++||.++.-                             -+.|++++.+++.+.+++|+..+.++
T Consensus        25 ~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~   95 (173)
T PF11085_consen   25 EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKF   95 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5788889999987631                             13588889999999999998766554

Their function is not known.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.30  E-value=0.6  Score=34.75  Aligned_cols=14  Identities=21%  Similarity=0.653  Sum_probs=12.5

Q ss_pred             HHHHHHhhhhhhcc
Q 038479           56 VVALVCGLLWGSIP   69 (133)
Q Consensus        56 i~ali~Gi~aGILg   69 (133)
                      +.++++|++|||++
T Consensus        66 i~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHH
Confidence            68899999999987

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00